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Copy dataset README files from meta/readme locations to dataset-root README.md paths.

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  1. Endoscopy/jhu/imerse/endosrt/endosrt/README.md +209 -0
  2. Endoscopy/ut_austin/arts_lab/colonoscope_lerobot/README.md +120 -0
  3. Surgical/jhu/imerse/nephfat/nephfat/README.md +174 -0
  4. Surgical/jhu/lcsr/arcade/cholecystectomy/README.md +316 -0
  5. Surgical/jhu/lcsr/miracle/needle_pick_up/README.md +209 -0
  6. Surgical/jhu/lcsr/miracle/needle_regrasp/README.md +209 -0
  7. Surgical/jhu/lcsr/miracle/prepare_to_pierce/README.md +209 -0
  8. Surgical/jhu/lcsr/smarts/SurgSync-multitask/P1/README.md +229 -0
  9. Surgical/jhu/lcsr/smarts/SurgSync-multitask/P2/README.md +229 -0
  10. Surgical/jhu/lcsr/smarts/SurgSync-multitask/P3/README.md +229 -0
  11. Surgical/jhu/lcsr/smarts/SurgSync-multitask/P4/README.md +229 -0
  12. Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P1/README.md +229 -0
  13. Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P2/README.md +229 -0
  14. Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P3/README.md +229 -0
  15. Surgical/obuda/frs_dome_1/README.md +214 -0
  16. Surgical/obuda/needlethreading_1/README.md +201 -0
  17. Surgical/obuda/needlethreading_2/README.md +202 -0
  18. Surgical/obuda/pegtransfer_1/README.md +206 -0
  19. Surgical/obuda/pegtransfer_2/README.md +206 -0
  20. Surgical/obuda/pork_1/README.md +204 -0
  21. Surgical/obuda/rollercoaster_1/README.md +199 -0
  22. Surgical/obuda/seaspike_1/README.md +200 -0
  23. Surgical/obuda/seaspike_2/README.md +200 -0
  24. Surgical/obuda/seaspike_3/README.md +200 -0
  25. Surgical/obuda/skinphantom_1/README.md +217 -0
  26. Surgical/semaphor/open_h_semaphor/README.md +175 -0
  27. Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/needle_transfer/README.md +232 -0
  28. Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/peg_transfer/README.md +232 -0
  29. Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/tissue_retraction/README.md +230 -0
  30. Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/simulation/block_transfer_sim_lerobot_1_28/README.md +228 -0
  31. Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/simulation/needle_transfer_sim_lerobot_1_28/README.md +228 -0
  32. Surgical/turin/mitic_lerobot_ex_vivo/README.md +160 -0
  33. Surgical/turin/mitic_lerobot_plastic_pad/README.md +160 -0
  34. Surgical/turin/mitic_lerobot_plastic_pad_3dmed/README.md +160 -0
  35. Surgical/turin/mitic_lerobot_plastic_tube/README.md +160 -0
  36. Surgical/ucsd/surgical_learning_dataset/README.md +227 -0
  37. Surgical/ucsd/surgical_learning_dataset2/README.md +211 -0
  38. Surgical/ucsd/surgical_learning_retraction_dataset3/README.md +215 -0
  39. Surgical/ucsd/surgical_learning_retraction_failurecase/README.md +215 -0
  40. Ultrasound/balgrist/sonogym_open_h_us_guidance_l1/README.md +231 -0
  41. Ultrasound/balgrist/sonogym_open_h_us_guidance_l2/README.md +231 -0
  42. Ultrasound/balgrist/sonogym_open_h_us_guidance_l3/README.md +231 -0
  43. Ultrasound/balgrist/sonogym_open_h_us_guidance_l4/README.md +231 -0
  44. Ultrasound/balgrist/sonogym_open_h_us_guidance_l5/README.md +231 -0
  45. Ultrasound/balgrist/ultrabones_lerobot_dataset_full/README.md +226 -0
  46. Ultrasound/balgrist/ultrabones_lerobot_dataset_full_2/README.md +226 -0
  47. Ultrasound/balgrist/ultrabones_lerobot_dataset_full_2_synthetic_robot_2/README.md +228 -0
  48. Ultrasound/balgrist/ultrabones_lerobot_dataset_full_3/README.md +226 -0
  49. Ultrasound/balgrist/ultrabones_lerobot_dataset_full_3_synthetic_robot_2/README.md +228 -0
  50. Ultrasound/balgrist/ultrabones_lerobot_dataset_full_synthetic_robot/README.md +228 -0
Endoscopy/jhu/imerse/endosrt/endosrt/README.md ADDED
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+ <!--
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+ Open-H Embodiment Dataset README Template (v1.0)
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+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
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+ This file helps others understand the context and details of your contribution.
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+ -->
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+
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+ # [Soft Robotic Guidewire Navigation] - README
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+
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+ ---
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+
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+ ## 📋 At a Glance
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+
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+ *Teleoperated demonstrations of a 5mm-diameter pneumatic soft robotic guidewire navigating to aneurysms in 3D-printed, rigid, planar phantoms.*
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+ ---
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+
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+ ## 📖 Dataset Overview
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+
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+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
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+ *This dataset contains 1907 trajectories of a single student demonstrator driving a soft robot's tip point into aneurysm cavities, in addition to 140 trajectories
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+ executed by an ACT-based imitation learning policy. There are 36 geometries used for teleoperation and 6 for the autonomous policy rollout, each with two
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+ aneurysms. Experiments are conducted on a table-top with simulated fluoroscopy as image feedback. It includes successful trials and recovery attempts.*
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+
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+ | | |
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+ | :--- | :--- |
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+ | **Total Trajectories** | `[2047]` |
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+ | **Total Hours** | `[2.1]` |
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+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[x] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
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+ | **License** | CC BY 4.0 |
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+ | **Version** | `[e.g., 1.0]` |
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+
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+ ---
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+
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+ ## 🎯 Tasks & Domain
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+
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+ ### Domain
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+
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+ *Select the primary domain for this dataset.*
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+
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+ - [x] **Surgical Robotics**
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+ - [ ] **Ultrasound Robotics**
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+ - [ ] **Other Healthcare Robotics** (Please specify: `[]`)
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+
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+ ### Demonstrated Skills
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+
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+ *List the primary skills or procedures demonstrated in this dataset.*
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+ - Advancing along vessel paths
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+ - Selecting branches at vascular bifurcations
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+ - Positioning inside aneurysm
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+
50
+ ---
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+
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+ ## 🔬 Data Collection Details
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+
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+ ### Collection Method
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+
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+ *How was the data collected?*
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+
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+ - [x] **Human Teleoperation**
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+ - [ ] **Programmatic/State-Machine**
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+ - [x] **AI Policy / Autonomous**
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+ - [ ] **Other** (Please specify: `[Your Method]`)
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+
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+ ### Operator Details
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+
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+ | | Description |
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+ | :--- | :--- |
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+ | **Operator Count** | `[1]` |
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+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[x] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
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+ | **Collection Period** | From `[2025-03-01]` to `[2025-04-30]` |
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+
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+ ### Recovery Demonstrations
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+
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+ *Does this dataset include examples of recovering from failure?*
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+
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+ - [x] **Yes**
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+ - [ ] **No**
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+
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+ **If yes, please briefly describe the recovery process:**
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+
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+ *For 602 demonstrations, demonstrations are initialized from a failed robot position, the operator tries to drive it back to the intended path.*
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+
82
+ ---
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+
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+ ## 💡 Diversity Dimensions
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+
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+ *Check all dimensions that were intentionally varied during data collection.*
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+
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+ - [ ] **Camera Position / Angle**
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+ - [ ] **Lighting Conditions**
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+ - [x] **Target Object** (e.g., different phantom models, suture types)
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+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
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+ - [ ] **Robot Embodiment** (if multiple robots were used)
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+ - [ ] **Task Execution** (e.g., different techniques for the same task)
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+ - [ ] **Background / Scene**
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+ - [ ] **Other** (Please specify: `[Your Dimension]`)
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+
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+ *If you checked any of the above please briefly elaborate below.*
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+
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+ We used 42 unique phantom geometries. In each of the different geometries, the robot starting position and aneurysm locations were slightly different.
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+
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+ ---
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+
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+ ## 🛠️ Equipment & Setup
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+
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+ ### Robotic Platform(s)
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+
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+ *List the primary robot(s) used.*
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+
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+ - **Robot 1:** `Custon 3D-printed pneumatic soft robotic guidewire`
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+
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+ ### Sensors & Cameras
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+
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+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
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+
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+ | Type | Model/Details |
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+ | :--- | :--- |
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+ | **Primary Camera** | `[Basler a2A2448-75ucBAS, 612x512 @ 25fps]` |
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+ | **Pressure Sensor** | `[Elveflow MPS-V2-L-4]` |
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+
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+ ---
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+
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+ ## 🎯 Action & State Space Representation
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+
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+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
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+
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+ ### Action Space Representation
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+
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+ **Primary Action Representation:**
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+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
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+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
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+ - [x] **Joint Space** (direct joint angle commands)
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+ - [ ] **Other** (Please specify: `[Your Representation]`)
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+
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+ **Orientation Representation:**
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+ - [ ] **Quaternions** (x, y, z, w)
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+ - [ ] **Euler Angles** (roll, pitch, yaw)
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+ - [ ] **Axis-Angle** (rotation vector)
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+ - [ ] **Rotation Matrix** (3x3 matrix)
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+ - [x] **Other** (Please specify: `[None]`)
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+
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+ **Reference Frame:**
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+ - [ ] **Robot Base Frame**
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+ - [ ] **Tool/End-Effector Frame**
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+ - [ ] **World/Global Frame**
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+ - [ ] **Camera Frame**
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+ - [x] **Other** (Please specify: `[None]`)
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+
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+ **Action Dimensions:**
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+ *List the action space dimensions and their meanings.*
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+
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+ action: [bend_pos, translate_pos, contrast]
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+ - bend_pos: Absolute position of stepper motor lead screw that drives syringe to induce bending (mL)
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+ - translate_pos: Absolute position of stepper motor lead screw position that drives translation of robot's tube (mm)
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+ - contrast: Binary flag (0/1) indicating whether to initiate a contrast injection
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+
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+ ### State Space Representation
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+
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+ **State Information Included:**
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+ - [x] **Joint Positions** (all articulated joints)
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+ - [ ] **Joint Velocities**
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+ - [ ] **End-Effector Pose** (Cartesian position/orientation)
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+ - [ ] **Force/Torque Readings**
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+ - [ ] **Gripper State** (position, force, etc.)
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+ - [x] **Other** (Please specify: `[Pressure reading]`)
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+
166
+ **State Dimensions:**
167
+ *List the state space dimensions and their meanings.*
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+
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+ observation.state: [bend_pos, translate_pos, bend_pressure]
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+ - bend_pos: Absolute position of stepper motor lead screw that drives syringe to induce bending (mL)
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+ - translate_pos: Absolute position of stepper motor lead screw position that drives translation of robot's tube (mm)
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+ - bend_pressure: Differential pressure of the robot's internal pneumatic channel (mbar)
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+
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+ ### 📋 Recommended Additional Representations
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+
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+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
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+
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+ **Recommended Action Fields:**
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+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
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+ ```
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+ [x, y, z, qx, qy, qz, qw, gripper_angle]
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+ ```
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+
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+ **Recommended State Fields:**
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+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
186
+ ```
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+ [joint_1, joint_2, ..., joint_n]
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+ ```
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+
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+
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+ ---
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+
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+ ## ⏱️ Data Synchronization Approach
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+
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+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
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+
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+ *We collect image frames from the Basler camera, pressure readings from the Elveflow, and motor positions from the stepper motors in each iteration of the same software control loop in LabVIEW software. The control loop ran at 25 Hz, and offline checks show skew of ±1 ms across a 5 minute capture. Thus, the camera, pressure readings, and motor positions are guaranteed to be within a 41 ms window. During export to LeRobot, the timestep's timestamp relative to the beginning of the run is written verbatim into the timestamp attribute.
198
+ ---
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+
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+ ## 👥 Attribution & Contact
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+
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+ *Please provide attribution for the dataset creators and a point of contact.*
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+
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+ | | |
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+ | :--- | :--- |
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+ | **Dataset Lead** | `[Noah Barnes]` |
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+ | **Institution** | `[Johns Hopkins University]` |
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+ | **Contact Email** | `[nbarne18@jhu.edu]` |
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+ | **Citation (BibTeX)** | <pre><code>@misc{[endosrt],<br> author = {Noah Barnes},<br> title = {Soft Robotic Guidewire Navigation},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Endoscopy/ut_austin/arts_lab/colonoscope_lerobot/README.md ADDED
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1
+ # Colonoscopy Robot Dataset
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+
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+ 📋 **At a Glance**: Teleoperated demonstrations of a flexible colonoscope robot navigating through silicone colon phantoms.
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+
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+ ## 📖 Dataset Overview
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+
7
+ This dataset contains teleoperated trajectories of the colonoscope robot performing insertion and retraction maneuvers through silicone colon phantoms. Data was collected on an NVIDIA Jetson Orin Nano Super (8GB) via manual teleoperation using an XBox Controller, with NDI Aurora electromagnetic tracking for ground truth tip pose.
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+
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+ | Metric | Value |
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+ |--------|-------|
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+ | Total Trajectories | 1894 |
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+ | Total Frames | 2095587 |
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+ | Total Hours | ~19.4 |
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+ | Data Type | Table-Top Phantom |
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+ | License | CC BY 4.0 |
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+ | Version | 1.0 |
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+
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+ ## 🎯 Tasks & Domain
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+
20
+ **Domain**: Surgical robotics (Flexible Colonoscopy)
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+
22
+ **Demonstrated Skills**:
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+ - Insertion: Navigating the colonoscope through the colon lumen
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+ - Retraction: Withdrawing the colonoscope while maintaining visualization
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+ - Insertion/Retraction while maintaining colon wall visibility (top/bottom/left/right)
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+ - Common failure modes
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+ - Recovering from occlusions, folds etc
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+
29
+
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+ ## 📊 Multiple Phantoms
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+
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+ This dataset includes data from multiple phantom models:
33
+ - **Global Info**: `meta/info.json` contains mappings (ID ↔ Name) for Phantoms and Sets.
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+ - **Episode Context**: `meta/episodes_context.json` links each episode to its specific Phantom and Set ID.
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+
36
+ ## 🔬 Data Collection Details
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+
38
+ | Field | Value |
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+ |-------|-------|
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+ | Collection Method | Human Teleoperation |
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+ | Operator Count | 5 |
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+ | Operator Skill Level | Intermediate (Trained Researcher) |
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+ | Collection Period | From [2025-11-15] to [2026-1-15]
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+ | Recovery Demonstrations | Yes |
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+
46
+ For recovery demonstrations, each episode is initialized from a partially or fully occluded camera position (due to colon folds, closeness to colon walls etc). The operator re-orients the robot such that the lumen is centered again.
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+
48
+ **Diversity Dimensions**:
49
+ - [x] Task Execution
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+ - [x] Spatial Layout (varying start positions in phantom)
51
+ - [x] Phantom Variation (multiple models)
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+ - [x] Lighting Conditions
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+ - [x] Magnetic Tracker Position
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+
55
+ Each demonstration started and ended at random points in the colon. The tracker position was varied by panning left to right (+/- 20 degrees) as well translating in X and Y (+/- 5 cm). Orientation was fixed along the Z (vertical, gravity aligned) axis.
56
+
57
+ ## 🛠️ Equipment & Setup
58
+
59
+ **Robotic Platform**: Cobra Colonoscope (4-motor tendon-driven flexible endoscope)
60
+
61
+ | Sensor Type | Details |
62
+ |-------------|---------|
63
+ | Primary Camera | Endoscopic Camera, 384x400 @ 30fps via ClearClick Video to USB Capture Device|
64
+ | Tracking System | NDI Aurora Electromagnetic Tracker |
65
+ | Controller | Xbox Wireless Controller |
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+
67
+ ## ⏱️ Data Synchronization
68
+
69
+ All sensors are recorded via ROS2 Humble on a single workstation clocked with ROS Time. **Calibration-based time alignment** is applied as a post-processing step using measured sensor lags to ensure all streams represent the same physical state. Specifically, we measure the distinct transport lag of each data stream relative to the camera video stream via sinusoidal fitting. To construct a frame at time $t_{video}$, we sample each sensor stream at a compensated time $t_{sensor}$ to ensure all data corresponds to the same physical instant:
70
+
71
+ This accounts for the variable latency between the video feed, the magnetic tracking system, and the motor drivers.
72
+
73
+ ### A Note on System Dynamics
74
+
75
+ The robot is a flexible, tendon-driven colonoscope. Unlike rigid serial manipulators, force transmission from the motors to the tip is not instantaneous. The system exhibits significant mechanical compliance due to:
76
+ * **Tendon Slack & Elasticity:** Delay in force propagation.
77
+ * **Friction & Tortuosity:** Variable resistance depending on the scope's curvature and interaction with the colon phantom.
78
+ * **Backlash:** Hysteresis when changing motion direction.
79
+
80
+ Although the static calibration mentioned above has been applied to the system, due to the flexible nature of the system, there is a variable delay betweeen the proximal and distal domain. Specifically,
81
+ * `action` (Joystick) and `observation.state` (Motor Encoders) are synchronized.
82
+ * `observation.images` (Video) and `observation.ndi_cartesian` (Tip Position) are synchronized.
83
+ * The variable delay observed between the Motor Encoders and NDI Tip Position depends on the dynamics of the system.
84
+
85
+
86
+ ## 🎯 Action & State Space Representation
87
+
88
+ ### Action Space
89
+
90
+ | Field | Shape | Type | Description |
91
+ |-------|-------|------|-------------|
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+ | `action` | (4,) | float32 | Control Action: [bend_x, bend_y, insertion, home] |
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+
94
+ ### State Space
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+
96
+ | Field | Shape | Type | Description |
97
+ |-------|-------|------|-------------|
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+ | `observation.state` | (3,) | int32 | Motor encoder positions |
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+ | `observation.ndi_cartesian_absolute` | (7,) | float32 | Tip pose: x,y,z (meters) + quaternion |
100
+ | `observation.ndi_cartesian_relative` | (6,) | float32 | Delta motion: dx,dy,dz + euler |
101
+ | `observation.images.endoscope` | (396,383,3) | video | Endoscopic camera view |
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+
103
+
104
+ ## 👥 Attribution & Contact
105
+
106
+ | Field | Value |
107
+ |-------|-------|
108
+ | Dataset Lead | [Siddhartha Kapuria, Farshid Alambeigi] |
109
+ | Department | [Walker Department of Mechanical Engineering] |
110
+ | Institution | [The University of Texas at Austin] |
111
+ | Contact Email | [skapuria@utexas.edu, farshid.alambeigi@austin.utexas.edu] |
112
+
113
+ ```bibtex
114
+ @misc{cobra_colonoscopy_2026,
115
+ author = {[Siddhartha Kapuria, Farshid Alambeigi]},
116
+ title = {Colonoscopy Robot Dataset},
117
+ year = {2026},
118
+ publisher = {Open-H-Embodiment},
119
+ }
120
+ ```
Surgical/jhu/imerse/nephfat/nephfat/README.md ADDED
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1
+
2
+ # NephFat - README
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+
4
+ ---
5
+
6
+ ## 📋 At a Glance
7
+
8
+ NephFat is a vision-kinematics dataset for perinephric fat dissection in robot-assisted partial nephrectomy, capturing >2,000 trajectories on ex-vivo porcine kidneys using the da Vinci Research Kit-Si (dVRK-Si) and the daVinci Si system.
9
+
10
+ ---
11
+
12
+ ## 📖 Dataset Overview
13
+
14
+ This proposal introduces a focused, high-quality dataset capturing perinephric fat dissection performed on the da Vinci Si surgical system controlled via the da Vinci Research Kit-Si (dVRK-Si). The task demands precise tissue manipulation, coordinated bimanual tool use, and continuous spatial reasoning. This hierarchical structure supports research in subtask segmentation, skill learning, and long-horizon surgical planning.
15
+
16
+ | | |
17
+ | :--- | :--- |
18
+ | **Total Trajectories** | >2,000 |
19
+ | **Total Hours** | |
20
+ | **Data Type** | [ ] Clinical <br> [x] Ex-Vivo <br> [ ] Table-Top Phantom <br> [ ] Digital Simulation <br> [ ] Physical Simulation <br> [ ] Other (If checked, update "Other") |
21
+ | **License** | CC BY 4.0 |
22
+ | **Version** | 1.0 (Target Public Release: Mar 2026) |
23
+
24
+ ---
25
+
26
+ ## 🎯 Tasks & Domain
27
+
28
+ ### Domain
29
+
30
+ - [x] **Surgical Robotics**
31
+ - [ ] **Ultrasound Robotics**
32
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
33
+
34
+ ### Demonstrated Skills
35
+
36
+ - Flap Grasp (tissue grasping and retraction)
37
+ - Scissors Placing (cutting tool positioning and alignment)
38
+ - Cut (controlled tissue dissection)
39
+ - Cap Removal (removal of fat overlying the tumor; optional)
40
+
41
+ ---
42
+
43
+ ## 🔬 Data Collection Details
44
+
45
+ ### Collection Method
46
+
47
+ - [x] **Human Teleoperation**
48
+ - [ ] **Programmatic/State-Machine**
49
+ - [ ] **AI Policy / Autonomous**
50
+ - [ ] **Other** (Please specify: `[Your Method]`)
51
+
52
+ ### Operator Details
53
+
54
+ | | Description |
55
+ | :--- | :--- |
56
+ | **Operator Count** | 3 (Doan Xuan Viet Pham, Dr. Jiawei Ge, Ethan Kilmer) |
57
+ | **Operator Skill Level** | [ ] Expert (e.g., Surgeon, Sonographer) <br> [x] Intermediate (e.g., Trained Researcher) <br> [x] Novice (e.g., ML Researcher with minimal experience) <br> [ ] N/A
58
+ | **Collection Period** | From 2025-06-01 to 2025-12-31 |
59
+
60
+ ### Recovery Demonstrations
61
+
62
+ - [x] **Yes**
63
+ - [ ] **No**
64
+
65
+ **If yes, please briefly describe the recovery process:**
66
+
67
+ Recovery data was specifically collected for failed scissors placing; in these instances, the 'out-of-distribution' state—where scissors were misaligned behind or adjacent to the grasped flap rather than correctly positioned for the cut—was deliberately reproduced before recording the corrective recovery trajectory.
68
+
69
+ ---
70
+
71
+ ## 💡 Diversity Dimensions
72
+
73
+ - [ ] **Camera Position / Angle**
74
+ - [ ] **Lighting Conditions**
75
+ - [x] **Target Object** (e.g., different phantom models, suture types)
76
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
77
+ - [ ] **Robot Embodiment** (if multiple robots were used)
78
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
79
+ - [ ] **Background / Scene**
80
+ - [x] **Other** (Please specify: `Cap Removal`)
81
+
82
+ *If you checked any of the above please briefly elaborate below.*
83
+
84
+ **Target Object:** The dataset comprises trajectories from $\ge20$ unique tissue samples. Trials were conducted on ex-vivo porcine kidneys prepared with chemically engineered tumor mimics (agarose and cellulose composites).
85
+
86
+ **Spatial Layout:** The prepared tumor mimics vary in size, shape and location.
87
+
88
+ **Cap Removal:**
89
+ Once adequate exposure is achieved, **cap removal is performed optionally**. Cap removal depends on surgeon preference and if existent after fat dissection. Some surgeons retain the fat cap as a grasping handle during subsequent tumor resection.
90
+
91
+ ---
92
+
93
+ ## 🛠️ Equipment & Setup
94
+
95
+ ### Robotic Platform(s)
96
+
97
+ - **Robot 1:** da Vinci Si system controlled using the da Vinci Research Kit-Si (dVRK-Si)
98
+
99
+ ### Sensors & Cameras
100
+
101
+ | Type | Model/Details |
102
+ | :--- | :--- |
103
+ | **Primary Camera** | Stereo endoscopic RGB camera |
104
+ | **Room/3rd Person Camera** | - |
105
+ | **Force/Torque Sensor** | - |
106
+ | **Medical Imager** | - |
107
+ | **Other** | Wrist-mounted RGB cameras (left and right arms) |
108
+ | **Other** | Robot kinematics and action trajectories |
109
+
110
+ ---
111
+
112
+ ## 🎯 Action & State Space Representation
113
+
114
+ ### Action Space Representation
115
+
116
+ **Primary Action Representation:**
117
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
118
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
119
+ - [ ] **Joint Space** (direct joint angle commands)
120
+ - [ ] **Other** (Please specify: `[Your Representation]`)
121
+
122
+ **Orientation Representation:**
123
+ - [ ] **Quaternions** (x, y, z, w)
124
+ - [ ] **Euler Angles** (roll, pitch, yaw)
125
+ - [ ] **Axis-Angle** (rotation vector)
126
+ - [ ] **Rotation Matrix** (3x3 matrix)
127
+ - [x] **Other** (Please specify: `6D rotation`)
128
+
129
+ **Reference Frame:**
130
+ - [ ] **Robot Base Frame**
131
+ - [ ] **Tool/End-Effector Frame**
132
+ - [ ] **World/Global Frame**
133
+ - [ ] **Camera Frame**
134
+ - [x] **Other** (Please specify: `Hybrid: Position w.r.t Endoscope Camera Tip; Rotation w.r.t End-Effector`)
135
+
136
+ **Action Dimensions:**
137
+ 10-dim action vector for each arm: [dx, dy, dz, r1, r2, r3, r4, r5, r6, jaw]
138
+ - dx, dy, dz: Delta position relative to Endoscope Tip Frame (3 dim)
139
+ - r1-r6: Delta rotation relative to current End-Effector Frame (6D rotation)
140
+ - jaw: Jaw angle (1 dim)
141
+
142
+ ### State Space Representation
143
+
144
+ **State Information Included:**
145
+ - [x] **Joint Positions** (all articulated joints)
146
+ - [ ] **Joint Velocities**
147
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
148
+ - [ ] **Force/Torque Readings**
149
+ - [x] **Gripper State** (position, force, etc.)
150
+ - [x] **Other** (Please specify: `Set Points (_sp), RCM Poses, and Setup Joints (suj)`)
151
+
152
+ **State Dimensions:**
153
+ *Comprehensive CSV state available (psm1, psm2, ecm, suj).
154
+ Key dimensions per arm:*
155
+ - **Joints:** 6 dim (`psm*_js[0-5]`)
156
+ - **Pose:** 7 dim (`position.x/y/z` + `orientation.x/y/z/w`)
157
+ - **Gripper:** 1 dim (`psm*_jaw`)
158
+
159
+ ---
160
+
161
+ ## ⏱️ Data Synchronization Approach
162
+
163
+ All sensor streams are time-synchronized, capturing continuous visual observations alongside corresponding robot actions. Quality assurance steps include verification of temporal alignment across modalities and consistency checks for kinematic and image streams.
164
+
165
+ ---
166
+
167
+ ## 👥 Attribution & Contact
168
+
169
+ | | |
170
+ | :--- | :--- |
171
+ | **Dataset Lead** | Doan Xuan Viet Pham, Dr. Jiawei Ge, Ethan Kilmer |
172
+ | **Institution** | Johns Hopkins University, Technical University of Munich |
173
+ | **Contact Email** | viet.x.pham@tum.de, jge9@jhu.edu, ekilmer1@jhu.edu |
174
+ | **Citation (BibTeX)** | <pre><code>@misc{nephfat_2026,<br> author = {Pham, Doan Xuan Viet and Ge, Jiawei and Kilmer, Ethan and Krieger, Axel},<br> title = {NephFat: A Vision-Kinematics Dataset for Perinephric Fat Dissection in Robot-Assisted Partial Nephrectomy},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br>}</code></pre> |
Surgical/jhu/lcsr/arcade/cholecystectomy/README.md ADDED
@@ -0,0 +1,316 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Cholecystectomy - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of a da Vinci robot performing Cholecystectomy on a pig liver with galblader*
14
+
15
+
16
+ ---
17
+
18
+ ## 📖 Dataset Overview
19
+
20
+ *This dataset contains 750 trajectories of novice surgeons using the dVRK to perform Cholecystectomy. It includes successful actions of grasping and dissecting the gallbladder to provide a robust dataset for training imitation learning policies.*
21
+
22
+ | | |
23
+ | :--- | :--- |
24
+ | **Total Trajectories** | `750` |
25
+ | **Total Hours** | `75` |
26
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
27
+ | **License** | CC BY 4.0 |
28
+ | **Version** | `2.0` |
29
+
30
+ ---
31
+
32
+ ## 🎯 Tasks & Domain
33
+
34
+ ### Domain
35
+
36
+ *Select the primary domain for this dataset.*
37
+
38
+ - [X] **Surgical Robotics**
39
+ - [ ] **Ultrasound Robotics**
40
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
41
+
42
+ ### Demonstrated Skills
43
+
44
+ *List the primary skills or procedures demonstrated in this dataset.*
45
+
46
+ - Grasping
47
+ - Dissection
48
+
49
+ ---
50
+
51
+ ## 🔬 Data Collection Details
52
+
53
+ ### Collection Method
54
+
55
+ *How was the data collected?*
56
+
57
+ - [X] **Human Teleoperation**
58
+ - [ ] **Programmatic/State-Machine**
59
+ - [ ] **AI Policy / Autonomous**
60
+ - [ ] **Other** (Please specify: `[Your Method]`)
61
+
62
+ ### Operator Details
63
+
64
+ | | Description |
65
+ | :--- | :--- |
66
+ | **Operator Count** | `2` |
67
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
68
+ | **Collection Period** | From `[2025-11-3]` to `[2025-12-19]` |
69
+
70
+ ### Recovery Demonstrations
71
+
72
+ *Does this dataset include examples of recovering from failure?*
73
+
74
+ - [ ] **Yes**
75
+ - [X] **No**
76
+
77
+ **If yes, please briefly describe the recovery process:**
78
+
79
+ ---
80
+
81
+ ## 💡 Diversity Dimensions
82
+
83
+ *Check all dimensions that were intentionally varied during data collection.*
84
+
85
+ - [X] **Camera Position / Angle**
86
+ - [ ] **Lighting Conditions**
87
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
88
+ - [ ] **Spatial Layout** (e.g., placing the target suture needle in various locations)
89
+ - [ ] **Robot Embodiment** (if multiple robots were used)
90
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
91
+ - [ ] **Background / Scene**
92
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
93
+
94
+ *If you checked any of the above please briefly elaborate below.*
95
+
96
+ The camera position was varied per tissue to simulate different angles of approach. This also leads to different views of the tissue and the tools, which can be used to train policies that are robust to different camera angles.
97
+
98
+
99
+ ---
100
+
101
+ ## 🛠️ Equipment & Setup
102
+
103
+ ### Robotic Platform(s)
104
+
105
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
106
+
107
+ ### Sensors & Cameras
108
+
109
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
110
+
111
+ | Type | Model/Details |
112
+ | :--- | :--- |
113
+ | **Primary Camera** | `Endoscopic Camera, 1920x1080 @ 30fps` |
114
+ | **Wrist Cameras** | `CMOS Endoscopy Camera, 516k Pixel (720 x 720) 1mmx1mm Square Camera, 120 Degree FOV, 2.5 m Length, 6 Pin Connector` |
115
+
116
+ ---
117
+
118
+ ## 🎯 Action & State Space Representation
119
+
120
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
121
+
122
+ ### Action Space Representation
123
+
124
+ **Primary Action Representation:**
125
+ - [X] **Absolute Cartesian** (position/orientation relative to robot base)
126
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
127
+ - [X] **Joint Space** (direct joint angle commands)
128
+ - [ ] **Other** (Please specify: `[Your Representation]`)
129
+
130
+ **Orientation Representation:**
131
+ - [X] **Quaternions** (x, y, z, w)
132
+ - [ ] **Euler Angles** (roll, pitch, yaw)
133
+ - [ ] **Axis-Angle** (rotation vector)
134
+ - [ ] **Rotation Matrix** (3x3 matrix)
135
+ - [ ] **Other** (Please specify: `[Your Representation]`)
136
+
137
+ **Reference Frame:**
138
+ - [X] **Robot Base Frame**
139
+ - [ ] **Tool/End-Effector Frame**
140
+ - [ ] **World/Global Frame**
141
+ - [ ] **Camera Frame**
142
+ - [ ] **Other** (Please specify: `[Your Frame]`)
143
+
144
+ **Action Dimensions:**
145
+ *List the action space dimensions and their meanings.*
146
+
147
+ ```
148
+ action.cartesian_psm1: [x, y, z, qx, qy, qz, qw, jaw]
149
+ - x, y, z: Absolute position in PSM1 base frame (meters)
150
+ - qx, qy, qz, qw: Absolute orientation as quaternion
151
+ - jaw: Jaw/gripper opening angle (radians)
152
+ ```
153
+
154
+ ```
155
+ action.cartesian_psm2: [x, y, z, qx, qy, qz, qw, jaw]
156
+ - x, y, z: Absolute position in PSM2 base frame (meters)
157
+ - qx, qy, qz, qw: Absolute orientation as quaternion
158
+ - jaw: Jaw/gripper opening angle (radians)
159
+ ```
160
+
161
+ ```
162
+ action.cartesian_ecm: [x, y, z, qx, qy, qz, qw]
163
+ - x, y, z: Absolute position in ECM base frame (meters)
164
+ - qx, qy, qz, qw: Absolute orientation as quaternion (camera has no gripper)
165
+ ```
166
+
167
+ ```
168
+ action.joint_psm1: [j1, j2, j3, j4, j5, j6]
169
+ - j1-j3: Joint positions (radians or meters for prismatic joint)
170
+ - j4-j6: Wrist joint positions (radians)
171
+ ```
172
+
173
+ ```
174
+ action.joint_psm2: [j1, j2, j3, j4, j5, j6]
175
+ - j1-j3: Joint positions (radians or meters for prismatic joint)
176
+ - j4-j6: Wrist joint positions (radians)
177
+ ```
178
+
179
+ ```
180
+ action.joint_ecm: [j1, j2, j3, j4]
181
+ - j1-j4: Camera manipulator joint positions (radians or meters)
182
+ ```
183
+
184
+ ```
185
+ Total Action Space (Dual-Arm + ECM):
186
+ - Cartesian: 23 dimensions (8 PSM1 + 8 PSM2 + 7 ECM)
187
+ - Joint Space: 16 dimensions (6 PSM1 + 6 PSM2 + 4 ECM)
188
+ ```
189
+
190
+ ### State Space Representation
191
+
192
+ **State Information Included:**
193
+ - [X] **Joint Positions** (all articulated joints)
194
+ - [ ] **Joint Velocities**
195
+ - [X] **End-Effector Pose** (Cartesian position/orientation)
196
+ - [ ] **Force/Torque Readings**
197
+ - [X] **Gripper State** (position, force, etc.)
198
+ - [X] **Other** (Please specify: `RCM (Remote Center of Motion) poses for PSM1, PSM2, ECM; SUJ (Setup Joints) poses and joint positions for all arms`)
199
+
200
+ **State Dimensions:**
201
+
202
+ List the state space dimensions and their meanings.
203
+
204
+ observation.state:
205
+
206
+ PSM1 (Patient Side Manipulator 1):
207
+ - psm1_pose: [x, y, z, qx, qy, qz, qw] - End-effector Cartesian pose (meters, quaternion)
208
+ - psm1_sp: [x, y, z, qx, qy, qz, qw] - End-effector setpoint/commanded pose
209
+ - psm1_jaw: Jaw/gripper opening angle (radians)
210
+ - psm1_jaw_sp: Jaw/gripper setpoint angle (radians)
211
+ - psm1_rcm_pose: [x, y, z, qx, qy, qz, qw] - Remote Center of Motion pose
212
+ - psm1_js: [j1, j2, j3, j4, j5, j6] - Joint positions (radians/meters)
213
+ - psm1_set_js: [j1, j2, j3, j4, j5, j6] - Joint setpoints (radians/meters)
214
+
215
+ PSM2 (Patient Side Manipulator 2):
216
+ - psm2_pose: [x, y, z, qx, qy, qz, qw] - End-effector Cartesian pose
217
+ - psm2_sp: [x, y, z, qx, qy, qz, qw] - End-effector setpoint/commanded pose
218
+ - psm2_jaw: Jaw/gripper opening angle (radians)
219
+ - psm2_jaw_sp: Jaw/gripper setpoint angle (radians)
220
+ - psm2_rcm_pose: [x, y, z, qx, qy, qz, qw] - Remote Center of Motion pose
221
+ - psm2_js: [j1, j2, j3, j4, j5, j6] - Joint positions (radians/meters)
222
+ - psm2_set_js: [j1, j2, j3, j4, j5, j6] - Joint setpoints (radians/meters)
223
+
224
+ PSM3 (Patient Side Manipulator 3):
225
+ - psm3_js: [j1, j2, j3, j4, j5, j6] - Joint positions (radians/meters)
226
+ - psm3_set_js: [j1, j2, j3, j4, j5, j6] - Joint setpoints (radians/meters)
227
+
228
+ ECM (Endoscopic Camera Manipulator):
229
+ - ecm_pose: [x, y, z, qx, qy, qz, qw] - Camera end-effector pose
230
+ - ecm_rcm_pose: [x, y, z, qx, qy, qz, qw] - Remote Center of Motion pose
231
+ - ecm_js: [j1, j2, j3, j4] - Joint positions (radians/meters)
232
+ - ecm_set_js: [j1, j2, j3, j4] - Joint setpoints (radians/meters)
233
+
234
+ SUJ (Setup Joints) - Positioning system for each arm:
235
+ - suj1_pose: [x, y, z, qx, qy, qz, qw] - SUJ1 end pose
236
+ - suj1_jp: [j1, j2, j3, j4] - SUJ1 joint positions (radians)
237
+ - suj2_pose: [x, y, z, qx, qy, qz, qw] - SUJ2 end pose
238
+ - suj2_jp: [j1, j2, j3, j4] - SUJ2 joint positions (radians)
239
+ - suj3_pose: [x, y, z, qx, qy, qz, qw] - SUJ3 end pose
240
+ - suj3_jp: [j1, j2, j3, j4] - SUJ3 joint positions (radians)
241
+ - suj_ecm_pose: [x, y, z, qx, qy, qz, qw] - SUJ ECM end pose
242
+ - suj_ecm_jp: [j1, j2, j3, j4] - SUJ ECM joint positions (radians)
243
+
244
+ Total State Dimension: 148 values
245
+
246
+
247
+ ### 📋 Recommended Additional Representations
248
+
249
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
250
+
251
+ **Recommended Action Fields:**
252
+ - **`action.cartesian_absolute_psm1`**: Absolute Cartesian pose for PSM1
253
+ ```
254
+ [x, y, z, qx, qy, qz, qw, jaw_angle]
255
+ ```
256
+
257
+ - **`action.cartesian_absolute_psm2`**: Absolute Cartesian pose for PSM2
258
+ ```
259
+ [x, y, z, qx, qy, qz, qw, jaw_angle]
260
+ ```
261
+
262
+ - **`action.cartesian_absolute_ecm`**: Absolute Cartesian pose for ECM
263
+ ```
264
+ [x, y, z, qx, qy, qz, qw]
265
+ ```
266
+
267
+ **Recommended State Fields:**
268
+ - **`bservation.state.joint_positions_psm1`**: Absolute positions for PSM1 joints
269
+ ```
270
+ [joint_1, joint_2, joint_3, joint_4, joint_5, joint_6]
271
+ ```
272
+
273
+ - **`bservation.state.joint_positions_psm2`**: Absolute positions for PSM2 joints
274
+ ```
275
+ [joint_1, joint_2, joint_3, joint_4, joint_5, joint_6]
276
+ ```
277
+
278
+ - **`bservation.state.joint_positions_ecm`**: Absolute positions for ECM joints
279
+ ```
280
+ [joint_1, joint_2, joint_3, joint_4]
281
+ ```
282
+ ---
283
+
284
+
285
+ Based on the provided scripts, here's the filled-in documentation for your Data Synchronization Approach:
286
+
287
+ ---
288
+
289
+ ## ⏱️ Data Synchronization Approach
290
+
291
+ *We capture robot kinematics data and RGB images from multiple camera views (left, right, and two endoscopic cameras), storing timestamps in nanosecond precision directly within image filenames (format: `frame{timestamp_ns}_{camera}.jpg`) and kinematics CSV files. All sensors record timestamps from the same system clock during data collection.*
292
+
293
+ **Synchronization Pipeline:**
294
+
295
+ 1. **Image-to-Kinematics Sync**: For each image timestamp extracted from filenames, we find the nearest kinematics data point in the sorted timestamp array. We check both the floor and ceiling indices and select the closest match by absolute time difference.
296
+
297
+ 2. **Outlier Filtering**: Frames where the image-to-kinematics time difference exceeds a configurable threshold (default: 30 ms) are marked as outliers and removed from the dataset to ensure temporal alignment quality.
298
+
299
+ 3. **Multi-Camera Synchronization**: Using the left camera as the temporal reference, we perform binary search to find matching frames across all camera views. A frame is retained only if **all cameras** have a corresponding image within the synchronization tolerance window. This strict enforcement ensures complete multi-view temporal alignment.
300
+
301
+ 4. **Validation and Export**: The filtering pipeline preserves only fully synchronized frames where both camera alignment and kinematics matching criteria are satisfied. Secondary camera frames are renamed to match the left camera's timestamp, maintaining 1:1 correspondence across all modalities.
302
+
303
+ 5. **Name and timestamp normalization**: Lastly, we normalize the name of the files to be indexed and the timestamps to be normalized to the start of the episode. This is done by finding the minimum timestamp across all modalities and subtracting it from all timestamps. This ensures that the first frame is always at timestamp 0.
304
+
305
+ ---
306
+
307
+ ---
308
+
309
+ ## 👥 Attribution & Contact
310
+
311
+ | | |
312
+ | :--- | :--- |
313
+ | **Dataset Lead** | `Jacob M. Delgado López` |
314
+ | **Institution** | `Johns Hopkins University` |
315
+ | **Contact Email** | `jdelga16@jh.edu` |
316
+ | **Citation (BibTeX)** | <pre><code>@misc{exvivo_chole_2025,<br> author = {Jacob M. Delgado López, Hao Ding, Lalithkumar Seenivasan, Han Zhang, Antony Goldenberg, Juo-Tung Chen, Xinhao Chen, Idris Sunmola, Mathias Unberath},<br> title = {Ex-Vivo Porcine Cholecystectomy Subtasks for Multimodal VLA Training},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/miracle/needle_pick_up/README.md ADDED
@@ -0,0 +1,209 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # JHU-MIRACLELab/needle-pick-up - README
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ *Teleoperated demonstrations of a da Vinci robot performing needle pickup on a silicone phantom.*
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ *This dataset contains TODO trajectory of a trained researcher using the dVRK to perform suture needle pickup.*
14
+
15
+ | | |
16
+ | :--- | :--- |
17
+ | **Total Trajectories** | `1` |
18
+ | **Total Hours** | `[Number]` |
19
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[V] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
20
+ | **License** | CC BY 4.0 |
21
+ | **Version** | `[1.0]` |
22
+
23
+ ---
24
+
25
+ ## 🎯 Tasks & Domain
26
+
27
+ ### Domain
28
+
29
+ *Select the primary domain for this dataset.*
30
+
31
+ - [x] **Surgical Robotics**
32
+ - [ ] **Ultrasound Robotics**
33
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
34
+
35
+ ### Demonstrated Skills
36
+
37
+ *List the primary skills or procedures demonstrated in this dataset.*
38
+
39
+ - Needle-pickup
40
+
41
+ ---
42
+
43
+ ## 🔬 Data Collection Details
44
+
45
+ ### Collection Method
46
+
47
+ *How was the data collected?*
48
+
49
+ - [x] **Human Teleoperation**
50
+ - [ ] **Programmatic/State-Machine**
51
+ - [ ] **AI Policy / Autonomous**
52
+ - [ ] **Other** (Please specify: `[Your Method]`)
53
+
54
+ ### Operator Details
55
+
56
+ | | Description |
57
+ | :--- | :--- |
58
+ | **Operator Count** | `1` |
59
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[V] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
60
+ | **Collection Period** | From `[2025-12-15]` to `[2025-12-31]` |
61
+
62
+ ### Recovery Demonstrations
63
+
64
+ *Does this dataset include examples of recovering from failure?*
65
+
66
+ - [x] **Yes**
67
+ - [ ] **No**
68
+
69
+ **If yes, please briefly describe the recovery process:**
70
+
71
+ *The operator will keep trying until the needle is successfully picked up.*
72
+
73
+ ---
74
+
75
+ ## 💡 Diversity Dimensions
76
+
77
+ *Check all dimensions that were intentionally varied during data collection.*
78
+
79
+ - [ ] **Camera Position / Angle**
80
+ - [ ] **Lighting Conditions**
81
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
82
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
83
+ - [x] **Robot Embodiment** (if multiple robots were used)
84
+ - [x] **Task Execution** (e.g., different techniques for the same task)
85
+ - [ ] **Background / Scene**
86
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
87
+
88
+ *If you checked any of the above please briefly elaborate below.*
89
+
90
+ We placed the needle and tissue phantom differently for each trajectory, and tried different ways of picking up a needle.
91
+
92
+ The trajectories contain 50% of a large needle driver as PSM2 and 50% of a cadiere forcep as PSM2.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
103
+
104
+ ### Sensors & Cameras
105
+
106
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
107
+
108
+ | Type | Model/Details |
109
+ | :--- | :--- |
110
+ | **Primary Camera** | `[e.g., Endoscopic Camera, 1920x1080 @ 30fps]` |
111
+ | **Room/3rd Person Camera** | `N/A` |
112
+ | **Force/Torque Sensor** | `N/A` |
113
+ | **Medical Imager** | `N/A` |
114
+ | **Other** | `N/A` |
115
+
116
+ ---
117
+
118
+ ## 🎯 Action & State Space Representation
119
+
120
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
121
+
122
+ ### Action Space Representation
123
+
124
+ **Primary Action Representation:**
125
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
126
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
127
+ - [x] **Joint Space** (direct joint angle commands)
128
+ - [ ] **Other** (Please specify: `[Your Representation]`)
129
+
130
+ **Orientation Representation:**
131
+ - [ ] **Quaternions** (x, y, z, w)
132
+ - [ ] **Euler Angles** (roll, pitch, yaw)
133
+ - [ ] **Axis-Angle** (rotation vector)
134
+ - [ ] **Rotation Matrix** (3x3 matrix)
135
+ - [ ] **Other** (Please specify: `[Your Representation]`)
136
+
137
+ **Reference Frame:**
138
+ - [ ] **Robot Base Frame**
139
+ - [ ] **Tool/End-Effector Frame**
140
+ - [ ] **World/Global Frame**
141
+ - [ ] **Camera Frame**
142
+ - [ ] **Other** (Please specify: `[Your Frame]`)
143
+
144
+ **Action Dimensions:**
145
+ *List the action space dimensions and their meanings.*
146
+
147
+ ```
148
+ action: [PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw, PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw]
149
+ - j1-j6: Delta joint angles for the 6 joints of a PSM (radians)
150
+ - jaw: Delta jaw angle (radians)
151
+ ```
152
+
153
+ ### State Space Representation
154
+
155
+ **State Information Included:**
156
+ - [x] **Joint Positions** (all articulated joints)
157
+ - [ ] **Joint Velocities**
158
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
159
+ - [ ] **Force/Torque Readings**
160
+ - [x] **Gripper State** (position, force, etc.)
161
+ - [ ] **Other** (Please specify: `[Your State Info]`)
162
+
163
+ **State Dimensions:**
164
+ *List the state space dimensions and their meanings.*
165
+
166
+ ```
167
+ observation.state: [ECM j1, ECM j2, ECM j3, ECM j4, ECM x, ECM y, ECM z, ECM qx, ECM qy, ECM qz, ECM qw, PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw,
168
+ PSM1 x, PSM1 y, PSM1 z, PSM1 qx, PSM1 qy, PSM1 qz, PSM1 qw,
169
+ PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw,
170
+ PSM2 x, PSM2 y, PSM2 z, PSM2 qx, PSM2 qy, PSM2 qz, PSM2 qw]
171
+ ```
172
+
173
+ ### 📋 Recommended Additional Representations
174
+
175
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
176
+
177
+ **Recommended Action Fields:**
178
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
179
+ ```
180
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
181
+ ```
182
+
183
+ **Recommended State Fields:**
184
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
185
+ ```
186
+ [joint_1, joint_2, ..., joint_n]
187
+ ```
188
+
189
+
190
+ ---
191
+
192
+ ## ⏱️ Data Synchronization Approach
193
+
194
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
195
+
196
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
197
+
198
+ ---
199
+
200
+ ## 👥 Attribution & Contact
201
+
202
+ *Please provide attribution for the dataset creators and a point of contact.*
203
+
204
+ | | |
205
+ | :--- | :--- |
206
+ | **Dataset Lead** | `[Chang Liu, Zih-Yun Chiu]` |
207
+ | **Institution** | `[Johns Hopkins University]` |
208
+ | **Contact Email** | `[cliu250@jh.edu, zchiu@jhu.edu]` |
209
+ | **Citation (BibTeX)** | <pre><code>@misc{[your_dataset_name_2025],<br> author = {[Your Name(s)]},<br> title = {[Your Dataset Title]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/miracle/needle_regrasp/README.md ADDED
@@ -0,0 +1,209 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # JHU-MIRACLELab/needle-regrasp - README
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ *Teleoperated demonstrations of a da Vinci robot regrasping a needle until reaching the optimal configuration.*
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ *This dataset contains TODO trajectory of a trained researcher using the dVRK to perform suture needle regrasp.*
14
+
15
+ | | |
16
+ | :--- | :--- |
17
+ | **Total Trajectories** | `1` |
18
+ | **Total Hours** | `[Number]` |
19
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[V] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
20
+ | **License** | CC BY 4.0 |
21
+ | **Version** | `[1.0]` |
22
+
23
+ ---
24
+
25
+ ## 🎯 Tasks & Domain
26
+
27
+ ### Domain
28
+
29
+ *Select the primary domain for this dataset.*
30
+
31
+ - [x] **Surgical Robotics**
32
+ - [ ] **Ultrasound Robotics**
33
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
34
+
35
+ ### Demonstrated Skills
36
+
37
+ *List the primary skills or procedures demonstrated in this dataset.*
38
+
39
+ - Needle-regrasp
40
+
41
+ ---
42
+
43
+ ## 🔬 Data Collection Details
44
+
45
+ ### Collection Method
46
+
47
+ *How was the data collected?*
48
+
49
+ - [x] **Human Teleoperation**
50
+ - [ ] **Programmatic/State-Machine**
51
+ - [ ] **AI Policy / Autonomous**
52
+ - [ ] **Other** (Please specify: `[Your Method]`)
53
+
54
+ ### Operator Details
55
+
56
+ | | Description |
57
+ | :--- | :--- |
58
+ | **Operator Count** | `1` |
59
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[V] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
60
+ | **Collection Period** | From `[2025-12-15]` to `[2025-12-31]` |
61
+
62
+ ### Recovery Demonstrations
63
+
64
+ *Does this dataset include examples of recovering from failure?*
65
+
66
+ - [x] **Yes**
67
+ - [ ] **No**
68
+
69
+ **If yes, please briefly describe the recovery process:**
70
+
71
+ *The operator will keep trying until the needle is successfully grasped at the optimal configuration.*
72
+
73
+ ---
74
+
75
+ ## 💡 Diversity Dimensions
76
+
77
+ *Check all dimensions that were intentionally varied during data collection.*
78
+
79
+ - [ ] **Camera Position / Angle**
80
+ - [ ] **Lighting Conditions**
81
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
82
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
83
+ - [x] **Robot Embodiment** (if multiple robots were used)
84
+ - [x] **Task Execution** (e.g., different techniques for the same task)
85
+ - [ ] **Background / Scene**
86
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
87
+
88
+ *If you checked any of the above please briefly elaborate below.*
89
+
90
+ The needle is initially in a random configuration.
91
+
92
+ The trajectories contain 50% of a large needle driver as PSM2 and 50% of a cadiere forcep as PSM2.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
103
+
104
+ ### Sensors & Cameras
105
+
106
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
107
+
108
+ | Type | Model/Details |
109
+ | :--- | :--- |
110
+ | **Primary Camera** | `[e.g., Endoscopic Camera, 1920x1080 @ 30fps]` |
111
+ | **Room/3rd Person Camera** | `N/A` |
112
+ | **Force/Torque Sensor** | `N/A` |
113
+ | **Medical Imager** | `N/A` |
114
+ | **Other** | `N/A` |
115
+
116
+ ---
117
+
118
+ ## 🎯 Action & State Space Representation
119
+
120
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
121
+
122
+ ### Action Space Representation
123
+
124
+ **Primary Action Representation:**
125
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
126
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
127
+ - [x] **Joint Space** (direct joint angle commands)
128
+ - [ ] **Other** (Please specify: `[Your Representation]`)
129
+
130
+ **Orientation Representation:**
131
+ - [ ] **Quaternions** (x, y, z, w)
132
+ - [ ] **Euler Angles** (roll, pitch, yaw)
133
+ - [ ] **Axis-Angle** (rotation vector)
134
+ - [ ] **Rotation Matrix** (3x3 matrix)
135
+ - [ ] **Other** (Please specify: `[Your Representation]`)
136
+
137
+ **Reference Frame:**
138
+ - [ ] **Robot Base Frame**
139
+ - [ ] **Tool/End-Effector Frame**
140
+ - [ ] **World/Global Frame**
141
+ - [ ] **Camera Frame**
142
+ - [ ] **Other** (Please specify: `[Your Frame]`)
143
+
144
+ **Action Dimensions:**
145
+ *List the action space dimensions and their meanings.*
146
+
147
+ ```
148
+ action: [PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw, PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw]
149
+ - j1-j6: Delta joint angles for the 6 joints of a PSM (radians)
150
+ - jaw: Delta jaw angle (radians)
151
+ ```
152
+
153
+ ### State Space Representation
154
+
155
+ **State Information Included:**
156
+ - [x] **Joint Positions** (all articulated joints)
157
+ - [ ] **Joint Velocities**
158
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
159
+ - [ ] **Force/Torque Readings**
160
+ - [x] **Gripper State** (position, force, etc.)
161
+ - [ ] **Other** (Please specify: `[Your State Info]`)
162
+
163
+ **State Dimensions:**
164
+ *List the state space dimensions and their meanings.*
165
+
166
+ ```
167
+ observation.state: [ECM j1, ECM j2, ECM j3, ECM j4, ECM x, ECM y, ECM z, ECM qx, ECM qy, ECM qz, ECM qw, PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw,
168
+ PSM1 x, PSM1 y, PSM1 z, PSM1 qx, PSM1 qy, PSM1 qz, PSM1 qw,
169
+ PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw,
170
+ PSM2 x, PSM2 y, PSM2 z, PSM2 qx, PSM2 qy, PSM2 qz, PSM2 qw]
171
+ ```
172
+
173
+ ### 📋 Recommended Additional Representations
174
+
175
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
176
+
177
+ **Recommended Action Fields:**
178
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
179
+ ```
180
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
181
+ ```
182
+
183
+ **Recommended State Fields:**
184
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
185
+ ```
186
+ [joint_1, joint_2, ..., joint_n]
187
+ ```
188
+
189
+
190
+ ---
191
+
192
+ ## ⏱️ Data Synchronization Approach
193
+
194
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
195
+
196
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
197
+
198
+ ---
199
+
200
+ ## 👥 Attribution & Contact
201
+
202
+ *Please provide attribution for the dataset creators and a point of contact.*
203
+
204
+ | | |
205
+ | :--- | :--- |
206
+ | **Dataset Lead** | `[Chang Liu, Zih-Yun Chiu]` |
207
+ | **Institution** | `[Johns Hopkins University]` |
208
+ | **Contact Email** | `[cliu250@jh.edu, zchiu@jhu.edu]` |
209
+ | **Citation (BibTeX)** | <pre><code>@misc{[your_dataset_name_2025],<br> author = {[Your Name(s)]},<br> title = {[Your Dataset Title]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/miracle/prepare_to_pierce/README.md ADDED
@@ -0,0 +1,209 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # JHU-MIRACLELab/prepare-to-pierce - README
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ *Teleoperated demonstrations of a da Vinci robot grasping the tissue to prepare for piercing.*
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ *This dataset contains TODO trajectory of a trained researcher using the dVRK to grasp the tissue and prepare for piercing.*
14
+
15
+ | | |
16
+ | :--- | :--- |
17
+ | **Total Trajectories** | `2` |
18
+ | **Total Hours** | `[Number]` |
19
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[V] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
20
+ | **License** | CC BY 4.0 |
21
+ | **Version** | `[1.0]` |
22
+
23
+ ---
24
+
25
+ ## 🎯 Tasks & Domain
26
+
27
+ ### Domain
28
+
29
+ *Select the primary domain for this dataset.*
30
+
31
+ - [x] **Surgical Robotics**
32
+ - [ ] **Ultrasound Robotics**
33
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
34
+
35
+ ### Demonstrated Skills
36
+
37
+ *List the primary skills or procedures demonstrated in this dataset.*
38
+
39
+ - Tissue-stabilization
40
+
41
+ ---
42
+
43
+ ## 🔬 Data Collection Details
44
+
45
+ ### Collection Method
46
+
47
+ *How was the data collected?*
48
+
49
+ - [x] **Human Teleoperation**
50
+ - [ ] **Programmatic/State-Machine**
51
+ - [ ] **AI Policy / Autonomous**
52
+ - [ ] **Other** (Please specify: `[Your Method]`)
53
+
54
+ ### Operator Details
55
+
56
+ | | Description |
57
+ | :--- | :--- |
58
+ | **Operator Count** | `1` |
59
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[V] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
60
+ | **Collection Period** | From `[2025-12-15]` to `[2025-12-31]` |
61
+
62
+ ### Recovery Demonstrations
63
+
64
+ *Does this dataset include examples of recovering from failure?*
65
+
66
+ - [x] **Yes**
67
+ - [ ] **No**
68
+
69
+ **If yes, please briefly describe the recovery process:**
70
+
71
+ *The operator will keep trying until the tissue is probably stabilized.*
72
+
73
+ ---
74
+
75
+ ## 💡 Diversity Dimensions
76
+
77
+ *Check all dimensions that were intentionally varied during data collection.*
78
+
79
+ - [ ] **Camera Position / Angle**
80
+ - [ ] **Lighting Conditions**
81
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
82
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
83
+ - [x] **Robot Embodiment** (if multiple robots were used)
84
+ - [x] **Task Execution** (e.g., different techniques for the same task)
85
+ - [ ] **Background / Scene**
86
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
87
+
88
+ *If you checked any of the above please briefly elaborate below.*
89
+
90
+ The needle is initially in a random configuration.
91
+
92
+ The trajectories contain 50% of a large needle driver as PSM2 and 50% of a cadiere forcep as PSM2.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
103
+
104
+ ### Sensors & Cameras
105
+
106
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
107
+
108
+ | Type | Model/Details |
109
+ | :--- | :--- |
110
+ | **Primary Camera** | `[e.g., Endoscopic Camera, 1920x1080 @ 30fps]` |
111
+ | **Room/3rd Person Camera** | `N/A` |
112
+ | **Force/Torque Sensor** | `N/A` |
113
+ | **Medical Imager** | `N/A` |
114
+ | **Other** | `N/A` |
115
+
116
+ ---
117
+
118
+ ## 🎯 Action & State Space Representation
119
+
120
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
121
+
122
+ ### Action Space Representation
123
+
124
+ **Primary Action Representation:**
125
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
126
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
127
+ - [x] **Joint Space** (direct joint angle commands)
128
+ - [ ] **Other** (Please specify: `[Your Representation]`)
129
+
130
+ **Orientation Representation:**
131
+ - [ ] **Quaternions** (x, y, z, w)
132
+ - [ ] **Euler Angles** (roll, pitch, yaw)
133
+ - [ ] **Axis-Angle** (rotation vector)
134
+ - [ ] **Rotation Matrix** (3x3 matrix)
135
+ - [ ] **Other** (Please specify: `[Your Representation]`)
136
+
137
+ **Reference Frame:**
138
+ - [ ] **Robot Base Frame**
139
+ - [ ] **Tool/End-Effector Frame**
140
+ - [ ] **World/Global Frame**
141
+ - [ ] **Camera Frame**
142
+ - [ ] **Other** (Please specify: `[Your Frame]`)
143
+
144
+ **Action Dimensions:**
145
+ *List the action space dimensions and their meanings.*
146
+
147
+ ```
148
+ action: [PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw, PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw]
149
+ - j1-j6: Delta joint angles for the 6 joints of a PSM (radians)
150
+ - jaw: Delta jaw angle (radians)
151
+ ```
152
+
153
+ ### State Space Representation
154
+
155
+ **State Information Included:**
156
+ - [x] **Joint Positions** (all articulated joints)
157
+ - [ ] **Joint Velocities**
158
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
159
+ - [ ] **Force/Torque Readings**
160
+ - [x] **Gripper State** (position, force, etc.)
161
+ - [ ] **Other** (Please specify: `[Your State Info]`)
162
+
163
+ **State Dimensions:**
164
+ *List the state space dimensions and their meanings.*
165
+
166
+ ```
167
+ observation.state: [ECM j1, ECM j2, ECM j3, ECM j4, ECM x, ECM y, ECM z, ECM qx, ECM qy, ECM qz, ECM qw, PSM1 j1, PSM1 j2, PSM1 j3, PSM1 j4, PSM1 j5, PSM1 j6, PSM1 jaw,
168
+ PSM1 x, PSM1 y, PSM1 z, PSM1 qx, PSM1 qy, PSM1 qz, PSM1 qw,
169
+ PSM2 j1, PSM2 j2, PSM2 j3, PSM2 j4, PSM2 j5, PSM2 j6, PSM2 jaw,
170
+ PSM2 x, PSM2 y, PSM2 z, PSM2 qx, PSM2 qy, PSM2 qz, PSM2 qw]
171
+ ```
172
+
173
+ ### 📋 Recommended Additional Representations
174
+
175
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
176
+
177
+ **Recommended Action Fields:**
178
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
179
+ ```
180
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
181
+ ```
182
+
183
+ **Recommended State Fields:**
184
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
185
+ ```
186
+ [joint_1, joint_2, ..., joint_n]
187
+ ```
188
+
189
+
190
+ ---
191
+
192
+ ## ⏱️ Data Synchronization Approach
193
+
194
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
195
+
196
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
197
+
198
+ ---
199
+
200
+ ## 👥 Attribution & Contact
201
+
202
+ *Please provide attribution for the dataset creators and a point of contact.*
203
+
204
+ | | |
205
+ | :--- | :--- |
206
+ | **Dataset Lead** | `[Chang Liu, Zih-Yun Chiu]` |
207
+ | **Institution** | `[Johns Hopkins University]` |
208
+ | **Contact Email** | `[cliu250@jh.edu, zchiu@jhu.edu]` |
209
+ | **Citation (BibTeX)** | <pre><code>@misc{[your_dataset_name_2025],<br> author = {[Your Name(s)]},<br> title = {[Your Dataset Title]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-multitask/P1/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-multitask P1
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-multitask/P1/`
6
+ - Source archive mapping: `online_data_part1.zip`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-multitask/P2/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-multitask P2
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-multitask/P2/`
6
+ - Source archive mapping: `online_data_part2.zip`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-multitask/P3/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-multitask P3
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-multitask/P3/`
6
+ - Source archive mapping: `online_data_part3.zip`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-multitask/P4/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-multitask P4
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-multitask/P4/`
6
+ - Source archive mapping: `online_data_part4.zip`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P1/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-stitch-coldcut P1
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P1/`
6
+ - Legacy source mapping: `Surgical/jhu/lscr/smarts/offline_recorder_extracted/offline_data_part1`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P2/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-stitch-coldcut P2
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P2/`
6
+ - Legacy source mapping: `Surgical/jhu/lscr/smarts/offline_recorder_extracted/offline_data_part2`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P3/README.md ADDED
@@ -0,0 +1,229 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SurgSync-stitch-coldcut P3
2
+
3
+ Canonical SMARTS leaf metadata README.
4
+
5
+ - Canonical path: `Surgical/jhu/lcsr/smarts/SurgSync-stitch-coldcut/P3/`
6
+ - Legacy source mapping: `Surgical/jhu/lscr/smarts/offline_recorder_extracted/offline_data_part3`.
7
+ - This leaf is one canonical part of the broader JHU SMARTS dataset.
8
+
9
+ The broader SMARTS dataset includes two sub-datasets: **offline_recorder** and **online_recorder**.
10
+
11
+ ---
12
+
13
+ ## 📋 At a Glance
14
+
15
+ *Provide a one-sentence summary of your dataset.*
16
+
17
+ Teleoperated demonstrations of a da Vinci robot (dVRK-Si) performing multiple canonical tasks on ex-vivo tissue or table-top phantoms; ~50% data collected within the Intuitive abdominal dome model. All data collection uses a modern stereo chip-on-tip endoscope. Both endoscope camera calibration and robot hand-eye calibration will be provided.
18
+
19
+ ---
20
+
21
+ ## File Structure
22
+
23
+ For the dataset, it should
24
+
25
+ ```text
26
+ ./offline_recorder or online_recorder
27
+ ├── calibration/
28
+ │ ├── case-*...
29
+ │ │ ├── camera calibration
30
+ │ │ │ ├── left.yaml
31
+ │ │ │ ├── right.yaml
32
+ │ │ │ └── stereo_calib_params.json
33
+ │ │ └── hand_eye_calibration
34
+ │ │ │ ├── PSM1/2-registration-dVRK.json
35
+ │ │ │ └── PSM1/2-registration-open-cv.json
36
+ ├── data/
37
+ │ └── case-*...
38
+ ├── videos/
39
+ │ └── case-*...
40
+ ├── meta/
41
+ │ ├── episodes.jsonl
42
+ │ ├── episodes_stats.jsonl
43
+ │ ├── tasks.jsonl
44
+ │ ├── info.json
45
+ │ └── README.md
46
+ └── total_time.json
47
+ ```
48
+
49
+ ---
50
+
51
+ ## 📖 Dataset Overview
52
+
53
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
54
+
55
+ This dataset comprises 2500+ teleoperated expert demonstrations of multiple canonical tasks on ex-vivo tissue or table-top phantoms using a surgical robotic system. The tasks include simple interrupted stitch, cold-cut dissection, peg transfer and tissue manipulation. It includes stereo endoscope calibration and robot hand–eye calibration (use dVRK camera registration format), along with high-fidelity, sharp stereo endoscopic video captured via a modern chip-on-tip endoscope. In addition to full task executions, the dataset provides consecutive subtask-level trajectories, enabling analysis of skill composition and procedural structure. Overall, it supports research in imitation learning and skill learning, surgical gesture/subtask recognition, and advanced perception (e.g., tool/tissue interaction understanding and visual tracking) in realistic surgical scenarios
56
+
57
+ | | |
58
+ | :--- |:-------------------------------------------------------------------------------------------------------------------------------------------------|
59
+ | **Total Trajectories** | `1087 ex-vivo (offline) + 1061 ex-vivo (online) + 361 phantom (online)` |
60
+ | **Total Hours** | `2.83 ex-vivo (offline) + 3.31 ex-vivo (online) + 0.35 phantom (online)` |
61
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
62
+ | **License** | CC BY 4.0 |
63
+ | **Version** | `[1.0]` |
64
+
65
+ **Note:** The user study experiments have been conducted under HIRB00000701 at Johns Hopkins University.
66
+
67
+ ---
68
+
69
+ ## 🎯 Tasks & Domain
70
+
71
+ ### Domain
72
+
73
+ *Select the primary domain for this dataset.*
74
+
75
+ - [X] **Surgical Robotics**
76
+ - [ ] **Ultrasound Robotics**
77
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
78
+
79
+ ### Demonstrated Skills
80
+
81
+ *List the primary skills or procedures demonstrated in this dataset.*
82
+
83
+ The primary skills or procedures demonstrated in this dataset include but not limited to:
84
+
85
+ - simple interrupted stitching and its subtasks
86
+ - cold cut dissection and its subtasks
87
+ - peg transfer and its subtasks
88
+ - tissue manipulation and its subtasks
89
+ - ...
90
+
91
+ ---
92
+
93
+ ## 🔬 Data Collection Details
94
+
95
+ ### Collection Method
96
+
97
+ *How was the data collected?*
98
+
99
+ - [X] **Human Teleoperation**
100
+ - [ ] **Programmatic/State-Machine**
101
+ - [ ] **AI Policy / Autonomous**
102
+ - [ ] **Other** (Please specify: `[Your Method]`)
103
+
104
+ ### Operator Details
105
+
106
+ | | Description |
107
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
108
+ | **Operator Count** | `[13]` |
109
+ | **Operator Skill Level** | `[4] Expert (e.g., Surgeon, Sonographer)` <br> `[5] Intermediate (e.g., Trained Researcher)` <br> `[4] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
110
+ | **Collection Period** | From `[2025-08-01]` to `[2026-01-08]` |
111
+
112
+ ### Recovery Demonstrations
113
+
114
+ *Does this dataset include examples of recovering from failure?*
115
+
116
+ - [ ] **Yes**
117
+ - [X] **No**
118
+
119
+ **If yes, please briefly describe the recovery process:**
120
+
121
+ **Note:** For your reference, this dataset includes recovery and failure demonstrations, but they are not labeled.
122
+
123
+ ---
124
+
125
+ ## 💡 Diversity Dimensions
126
+
127
+ *Check all dimensions that were intentionally varied during data collection.*
128
+
129
+ - [X] **Camera Position / Angle**
130
+ - [X] **Lighting Conditions**
131
+ - [X] **Target Object** (e.g., different phantom models, suture types)
132
+ - [X] **Spatial Layout** (e.g., placing the target suture needle in various locations)
133
+ - [ ] **Robot Embodiment** (if multiple robots were used)
134
+ - [X] **Task Execution** (e.g., different techniques for the same task)
135
+ - [X] **Background / Scene**
136
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
137
+
138
+ *If you checked any of the above please briefly elaborate below.*
139
+
140
+ The camera (endoscope) can move with dVRK-Si ECM (endoscopy camera manipulator) as needed. The lighting conditions will be changed due to the camera movements. For the stitch, it has both ex-vivo tissue (chicken breast) and silicon phantom cases. The orientation of the wounds could vary from cases to cases. For cold-cut dissection, the target tissue can be different. The options include chicken drumsticks, thin-slide beef/pork, pork belly. The target suture needle could be in various locations. The background can be ex-vivo tissue or the surgical drapes. The detailed subtask approach can vary from cases to cases. For example, the knot-typing could be double throw or single throw.
141
+
142
+
143
+ ---
144
+
145
+ ## 🛠️ Equipment & Setup
146
+
147
+ ### Robotic Platform(s)
148
+
149
+ *List the primary robot(s) used.*
150
+
151
+ - **Robot 1:** `dVRK-Si (the next generation da Vinci Reseach Kit)`
152
+
153
+
154
+ ### Sensors & Cameras
155
+
156
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
157
+
158
+ | Type | Model/Details |
159
+ | :--- |:------------------------------------------------------------------------------------------------------------------------|
160
+ | **Primary Camera** | `Endoscopic Camera from Cornerstone Robotics Limited, 1920x1080 @ 60fps, recoreded in 10 FPS` |
161
+ | **Room/3rd Person Camera** | `Intel RealSense RGBD camera, only using RGB channel as a mono side-view camera, 1920x1080 @ 30fps, recorded in 10 FPS` |
162
+ | **Force/Torque Sensor** | `N/A` |
163
+ | **Medical Imager** | `N/A` |
164
+ | **Other** | `[Specify]` |
165
+
166
+ **Note** The camera calibration files and hand-eye calibration matrices are just for the primary camera.
167
+
168
+ ---
169
+
170
+ ## 🎯 Action & State Space Representation (will update if needed)
171
+
172
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
173
+
174
+ **Please refer to the subfolder README.md for more details.**
175
+
176
+ ---
177
+
178
+ ## ⏱️ Data Synchronization Approach
179
+
180
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
181
+
182
+ We use a time-synchronized multi-modal data collection framework from an accepted ICRA 2026 paper:
183
+ ```
184
+ @inproceedings{zhou2026surgsync,
185
+ title={SurgSync: Time-Synchronized Multi-modal Data Collection Framework and Dataset for Surgical Robotics},
186
+ author={Zhou, Haoying and ... and Kazanzides, Peter},
187
+ booktitle={IEEE Intl. Conf. on Robotics and Automation (ICRA)},
188
+ year={2026}
189
+ }
190
+ ```
191
+ We have two desktop: one for dVRK running and one for all the other pipelines. They are connected using ROS network and its NTP.
192
+
193
+ We have two modes when data collection, and the performance is highly dependent on the hardware.
194
+
195
+ **Online(-matching) Recorder**: (not uploaded yet)
196
+
197
+ The design enforces strict time synchronization using multi-threading: only samples that fall within a user-defined time tolerance are admitted. This yields slightly uneven inter-sample intervals (irregular dt),
198
+ but it retains the natural continuity of smooth teleoperation segments and avoids label/feature drift. In our study, a time tolerance of 10 ms is selected to ensure both high time
199
+ alignment tightness and consecutive recorder output.
200
+
201
+ As a result, the recorder time latency is 6.36 (+/- 4.72) ms with a median of 5.58ms. The recording frequency is 4.04 (+\- 1.69) Hz. We will assemble everything assume 10 FPS.
202
+
203
+ **Offline(-matching) Recorder**: (already fully uploaded)
204
+
205
+ Our offline-matching approach decouples recording from time alignments to maximize
206
+ the recording system efficiency. Therefore, this recorder produces synchronized datasets in two stages: (i) a lightweight
207
+ recorder logs camera streams to videos (pre-synced) and raw kinematic streams to binary files to disk with minimal processing;
208
+ (ii) an offline post-processing pipeline reconstructs a fixed-rate frame sequence and, for each frame, gathers the five
209
+ closest samples using nearest-timestamp lookup for subsequent interpolation. Compared to the online-matching recorder (which
210
+ pairs visual and kinematic data in real time), this two-stage design avoids tolerance-based dropping of data during capture
211
+ yielding a higher throughput and uniform intervals between synchronized data packets at the cost of requiring more storage
212
+ and substantial time for post-collection time-matching and interpolation.
213
+
214
+ As a result, the recorder time latency is 1.35 (+/- 0.81) ms with a median of 1.33ms. And the recording frequency is a solid 10.00 FPS.
215
+
216
+ **Note:** *Both recorders may have few outliners due to our suboptimal workstation hardware.*
217
+
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- |:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
226
+ | **Dataset Lead** | `[Haoying Zhou (student lead), Peter Kazanzides (faculty PI)]` |
227
+ | **Institution** | `[Johns Hopkins University, Worcester Polytechnic Institute (Haoying Zhou)]` |
228
+ | **Contact Email** | `[hzhou6@wpi.edu, hzhou62@jh.edu, pkaz@jhu.edu]` |
229
+ | **Citation (BibTeX)** | <pre><code>@misc{[SurgSyncExt],<br> author = {[Haoying Zhou, Peter Kazanzides, Chang Liu, Junlin Wu, Yimeng Wu, Hongjun Wu]},<br> title = {[SurgSyncExt: Time-Synchronized Multi-Modal Dataset for Surgical Robotics]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/obuda/frs_dome_1/README.md ADDED
@@ -0,0 +1,214 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations of a da Vinci robot performing knot tying and suturing tasks on the FRS Dome phantom.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of a laparoscopic surgeon using the dVRK to perform knot tying and suturing practice tasks on the FRS Dome (phantom info: https://www.surgicalexcellence.org/frs-dome). It includes successful trials, failures, and recovery attempts as well.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `102` |
24
+ | **Total Hours** | `01:18:23` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Knot tying
43
+ - Suturing (stitching)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+
52
+ - [X] **Human Teleoperation**
53
+ - [ ] **Programmatic/State-Machine**
54
+ - [ ] **AI Policy / Autonomous**
55
+ - [ ] **Other** (Please specify)
56
+
57
+ ### Operator Details
58
+
59
+ | | Description |
60
+ | :--- | :--- |
61
+ | **Operator Count** | `3` |
62
+ | **Operator Skill Level** | `[X] Expert (Laparoscopic surgeon)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
63
+ | **Collection Period** | From `[2026-01-27]` to `[2026-01-28]` |
64
+
65
+ ### Recovery Demonstrations
66
+
67
+
68
+ - [X] **Yes**
69
+ - [ ] **No**
70
+
71
+ **If yes, please briefly describe the recovery process:**
72
+
73
+
74
+ - Knot tying:
75
+ - Re-grasping of the thread
76
+ - Thread stuck on the tool but recovered
77
+
78
+ - Suturing: not distinguished
79
+
80
+
81
+ ### Failure Demonstrations
82
+
83
+
84
+ - [X] **Yes**
85
+ - [ ] **No**
86
+
87
+ **If yes, please briefly describe the recovery process:**
88
+
89
+
90
+ - Knot tying:
91
+ - Thread stuck on tool
92
+
93
+ - Suturing: not distinguished
94
+
95
+
96
+ ---
97
+
98
+ ## 💡 Diversity Dimensions
99
+
100
+
101
+ - [X] **Camera Position / Angle**
102
+ - [X] **Lighting Conditions**
103
+ - [ ] **Target Object**
104
+ - [ ] **Spatial Layout**
105
+ - [ ] **Robot Embodiment**
106
+ - [ ] **Task Execution**
107
+ - [X] **Background / Scene**
108
+ - [X] **Other** (Please specify: `Setup joints`, `Thread length`, `Technique`)
109
+
110
+
111
+
112
+ Details:
113
+
114
+ - Endoscope lighting was changed throughout the trials (all tasks)
115
+ - Natural and ceiling background light changed (all tasks)
116
+ - Camera positon was varied (all tasks)
117
+ - Set up joint configuration was varied (all tasks)
118
+ - Thread length was varied (suturing)
119
+ - Different stitching techniques (suturing)
120
+
121
+
122
+ ---
123
+
124
+ ## 🛠️ Equipment & Setup
125
+
126
+ ### Robotic Platform(s)
127
+
128
+
129
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
130
+
131
+ ### Sensors & Cameras
132
+
133
+
134
+ | Type | Model/Details |
135
+ | :--- | :--- |
136
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
137
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
138
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
139
+
140
+ ---
141
+
142
+ ## 🎯 Action & State Space Representation
143
+
144
+
145
+ ### Action Space Representation
146
+
147
+ **Primary Action Representation:**
148
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
149
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
150
+ - [ ] **Joint Space** (direct joint angle commands)
151
+ - [ ] **Other** (Please specify: `[Your Representation]`)
152
+
153
+ **Orientation Representation:**
154
+ - [x] **Quaternions** (x, y, z, w)
155
+ - [ ] **Euler Angles** (roll, pitch, yaw)
156
+ - [ ] **Axis-Angle** (rotation vector)
157
+ - [ ] **Rotation Matrix** (3x3 matrix)
158
+ - [ ] **Other** (Please specify: `[Your Representation]`)
159
+
160
+ **Reference Frame:**
161
+ - [x] **Robot Base Frame**
162
+ - [ ] **Tool/End-Effector Frame**
163
+ - [ ] **World/Global Frame**
164
+ - [ ] **Camera Frame**
165
+ - [ ] **Other** (Please specify: `[Your Frame]`)
166
+
167
+ **Action Dimensions:**
168
+
169
+ ```
170
+ action: [x, y, z, qx, qy, qz, qw, gripper]
171
+ - x, y, z: Absolute position in robot base frame (meters)
172
+ - qx, qy, qz, qw: Absolute orientation as quaternion
173
+ - gripper: Gripper opening angle (radians)
174
+ ```
175
+
176
+ ### State Space Representation
177
+
178
+ **State Information Included:**
179
+ - [ ] **Joint Positions** (all articulated joints)
180
+ - [ ] **Joint Velocities**
181
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
182
+ - [ ] **Force/Torque Readings**
183
+ - [x] **Gripper State** (position, force, etc.)
184
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
185
+
186
+ **State Dimensions:**
187
+
188
+ ```
189
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
190
+ - x, y, z: Absolute position in robot base frame (meters)
191
+ - qx, qy, qz, qw: Absolute orientation as quaternion
192
+ - gripper: Gripper opening angle (radians)
193
+ ```
194
+
195
+ ### 📋 Additional Representations
196
+
197
+ ---
198
+
199
+ ## ⏱️ Data Synchronization Approach
200
+
201
+
202
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
203
+
204
+ ---
205
+
206
+ ## 👥 Attribution & Contact
207
+
208
+
209
+ | | |
210
+ | :--- | :--- |
211
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Kristóf Móga, Tamás Haidegger]` |
212
+ | **Institution** | `[Obuda University]` |
213
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, kristof.moga@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
214
+ | **Citation (BibTeX)** | |
Surgical/obuda/needlethreading_1/README.md ADDED
@@ -0,0 +1,201 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "needle threading" surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "needle threading" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode is defined as the threading of a string through the loop of an eye bolt.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `196` |
24
+ | **Total Hours** | `00:57:16` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - String threading
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `3` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-01-23]` to `[2026-01-26]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The string misses the ye of the bolt on the 1st attempt
73
+ - String is not grasped on 1st attempt during handover
74
+
75
+
76
+ ### Failure Demonstrations
77
+
78
+
79
+ - [X] **Yes**
80
+ - [ ] **No**
81
+
82
+ **If yes, please briefly describe the failures:**
83
+
84
+ - Tool collision
85
+ - Pushing the board by hitting the bolts with a tool
86
+ - Repeatedly missing the eye of the bolt
87
+
88
+ ---
89
+
90
+ ## 💡 Diversity Dimensions
91
+
92
+
93
+ - [X] **Camera Position / Angle**
94
+ - [X] **Lighting Conditions**
95
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
96
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
97
+ - [ ] **Robot Embodiment** (if multiple robots were used)
98
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
99
+ - [X] **Background / Scene** (different colors in the background)
100
+ - [X] **Other** (Please specify: `[Setup joints]`)
101
+
102
+ *If you checked any of the above please briefly elaborate below.*
103
+
104
+ - Endoscope lighting was changed throughout the trials
105
+ - Camera positon was varied
106
+ - Set up joint configuration was varied
107
+ - The board and the string position at start were varied
108
+
109
+
110
+ ---
111
+
112
+ ## 🛠️ Equipment & Setup
113
+
114
+ ### Robotic Platform(s)
115
+
116
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
117
+
118
+ ### Sensors & Cameras
119
+
120
+
121
+ | Type | Model/Details |
122
+ | :--- | :--- |
123
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
124
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
125
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
126
+
127
+ ---
128
+
129
+ ## 🎯 Action & State Space Representation
130
+
131
+
132
+ ### Action Space Representation
133
+
134
+ **Primary Action Representation:**
135
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
136
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
137
+ - [ ] **Joint Space** (direct joint angle commands)
138
+ - [ ] **Other** (Please specify: `[Your Representation]`)
139
+
140
+ **Orientation Representation:**
141
+ - [x] **Quaternions** (x, y, z, w)
142
+ - [ ] **Euler Angles** (roll, pitch, yaw)
143
+ - [ ] **Axis-Angle** (rotation vector)
144
+ - [ ] **Rotation Matrix** (3x3 matrix)
145
+ - [ ] **Other** (Please specify: `[Your Representation]`)
146
+
147
+ **Reference Frame:**
148
+ - [x] **Robot Base Frame**
149
+ - [ ] **Tool/End-Effector Frame**
150
+ - [ ] **World/Global Frame**
151
+ - [ ] **Camera Frame**
152
+ - [ ] **Other** (Please specify: `[Your Frame]`)
153
+
154
+ **Action Dimensions:**
155
+
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [ ] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [x] **Gripper State** (position, force, etc.)
171
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
172
+
173
+ **State Dimensions:**
174
+
175
+ ```
176
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
177
+ - x, y, z: Absolute position in robot base frame (meters)
178
+ - qx, qy, qz, qw: Absolute orientation as quaternion
179
+ - gripper: Gripper opening angle (radians)
180
+ ```
181
+
182
+ ### 📋 Additional Representations
183
+
184
+ ---
185
+
186
+ ## ⏱️ Data Synchronization Approach
187
+
188
+
189
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
190
+
191
+ ---
192
+
193
+ ## 👥 Attribution & Contact
194
+
195
+
196
+ | | |
197
+ | :--- | :--- |
198
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Tamás Haidegger]` |
199
+ | **Institution** | `[Obuda University]` |
200
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
201
+ | **Citation (BibTeX)** | |
Surgical/obuda/needlethreading_2/README.md ADDED
@@ -0,0 +1,202 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "needle threading" surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "needle threading" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode is defined as the threading of a string through the loop of an eye bolt.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `204` |
24
+ | **Total Hours** | `00:56:47` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - String threading
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `2` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-02-10]` to `[2026-02-11]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The string misses the eye of the bolt on the 1st attempt
73
+ - String is not grasped on 1st attempt during handover
74
+
75
+
76
+ ### Failure Demonstrations
77
+
78
+
79
+ - [X] **Yes**
80
+ - [ ] **No**
81
+
82
+ **If yes, please briefly describe the failures:**
83
+
84
+ - Tool collision
85
+ - Pushing the board by hitting the bolts with a tool
86
+ - Repeatedly missing the eye of the bolt
87
+
88
+ ---
89
+
90
+ ## 💡 Diversity Dimensions
91
+
92
+
93
+ - [X] **Camera Position / Angle**
94
+ - [X] **Lighting Conditions**
95
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
96
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
97
+ - [ ] **Robot Embodiment** (if multiple robots were used)
98
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
99
+ - [X] **Background / Scene** (different colors in the background)
100
+ - [X] **Other** (Please specify: `[Setup joints]`)
101
+
102
+ *If you checked any of the above please briefly elaborate below.*
103
+
104
+ - Endoscope lighting was changed throughout the trials
105
+ - Camera positon was varied
106
+ - Set up joint configuration was varied
107
+ - The board and the string position at start were varied
108
+ - Background was varied
109
+
110
+
111
+ ---
112
+
113
+ ## 🛠️ Equipment & Setup
114
+
115
+ ### Robotic Platform(s)
116
+
117
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
118
+
119
+ ### Sensors & Cameras
120
+
121
+
122
+ | Type | Model/Details |
123
+ | :--- | :--- |
124
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
125
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
126
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
127
+
128
+ ---
129
+
130
+ ## 🎯 Action & State Space Representation
131
+
132
+
133
+ ### Action Space Representation
134
+
135
+ **Primary Action Representation:**
136
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
137
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
138
+ - [ ] **Joint Space** (direct joint angle commands)
139
+ - [ ] **Other** (Please specify: `[Your Representation]`)
140
+
141
+ **Orientation Representation:**
142
+ - [x] **Quaternions** (x, y, z, w)
143
+ - [ ] **Euler Angles** (roll, pitch, yaw)
144
+ - [ ] **Axis-Angle** (rotation vector)
145
+ - [ ] **Rotation Matrix** (3x3 matrix)
146
+ - [ ] **Other** (Please specify: `[Your Representation]`)
147
+
148
+ **Reference Frame:**
149
+ - [x] **Robot Base Frame**
150
+ - [ ] **Tool/End-Effector Frame**
151
+ - [ ] **World/Global Frame**
152
+ - [ ] **Camera Frame**
153
+ - [ ] **Other** (Please specify: `[Your Frame]`)
154
+
155
+ **Action Dimensions:**
156
+
157
+ ```
158
+ action: [x, y, z, qx, qy, qz, qw, gripper]
159
+ - x, y, z: Absolute position in robot base frame (meters)
160
+ - qx, qy, qz, qw: Absolute orientation as quaternion
161
+ - gripper: Gripper opening angle (radians)
162
+ ```
163
+
164
+ ### State Space Representation
165
+
166
+ **State Information Included:**
167
+ - [ ] **Joint Positions** (all articulated joints)
168
+ - [ ] **Joint Velocities**
169
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
170
+ - [ ] **Force/Torque Readings**
171
+ - [x] **Gripper State** (position, force, etc.)
172
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
173
+
174
+ **State Dimensions:**
175
+
176
+ ```
177
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
178
+ - x, y, z: Absolute position in robot base frame (meters)
179
+ - qx, qy, qz, qw: Absolute orientation as quaternion
180
+ - gripper: Gripper opening angle (radians)
181
+ ```
182
+
183
+ ### 📋 Additional Representations
184
+
185
+ ---
186
+
187
+ ## ⏱️ Data Synchronization Approach
188
+
189
+
190
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
191
+
192
+ ---
193
+
194
+ ## 👥 Attribution & Contact
195
+
196
+
197
+ | | |
198
+ | :--- | :--- |
199
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Tamás Haidegger]` |
200
+ | **Institution** | `[Obuda University]` |
201
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
202
+ | **Citation (BibTeX)** | |
Surgical/obuda/pegtransfer_1/README.md ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations of a da Vinci robot performing peg transfer on a 3D printed model with silicone pegs.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform peg transfer. It includes successful trials, failures, and recovery attempts as well. One episode demonstrates the transfer of 1 peg.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `216` |
24
+ | **Total Hours** | `01:14:54` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Peg transfer
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `3` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-01-22]` to `[2026-01-23]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+
73
+ - The peg is not grasped accurately, the operator has to re-grasp the peg.
74
+ - Pegs are placed incorrectly onto the rods, the operator has to reposition.
75
+
76
+
77
+ ### Failure Demonstrations
78
+
79
+
80
+ - [X] **Yes**
81
+ - [ ] **No**
82
+
83
+ **If yes, please briefly describe the recovery process:**
84
+
85
+
86
+ - The peg falls out of the grasp.
87
+ - The tools hit the board and push it extensively.
88
+
89
+
90
+ ---
91
+
92
+ ## 💡 Diversity Dimensions
93
+
94
+
95
+ - [X] **Camera Position / Angle**
96
+ - [X] **Lighting Conditions**
97
+ - [ ] **Target Object**
98
+ - [ ] **Spatial Layout**
99
+ - [ ] **Robot Embodiment**
100
+ - [ ] **Task Execution**
101
+ - [X] **Background / Scene**
102
+ - [X] **Other** (Please specify: `Setup joints`)
103
+
104
+
105
+
106
+ Details:
107
+
108
+ - Endoscope lighting was changed throughout the trials
109
+ - Natural and ceiling background light changed
110
+ - Camera positon was varied
111
+ - Set up joint configuration was varied
112
+
113
+
114
+ ---
115
+
116
+ ## 🛠️ Equipment & Setup
117
+
118
+ ### Robotic Platform(s)
119
+
120
+
121
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
122
+
123
+ ### Sensors & Cameras
124
+
125
+
126
+ | Type | Model/Details |
127
+ | :--- | :--- |
128
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
129
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
130
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
131
+
132
+ ---
133
+
134
+ ## 🎯 Action & State Space Representation
135
+
136
+
137
+ ### Action Space Representation
138
+
139
+ **Primary Action Representation:**
140
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
141
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
142
+ - [ ] **Joint Space** (direct joint angle commands)
143
+ - [ ] **Other** (Please specify: `[Your Representation]`)
144
+
145
+ **Orientation Representation:**
146
+ - [x] **Quaternions** (x, y, z, w)
147
+ - [ ] **Euler Angles** (roll, pitch, yaw)
148
+ - [ ] **Axis-Angle** (rotation vector)
149
+ - [ ] **Rotation Matrix** (3x3 matrix)
150
+ - [ ] **Other** (Please specify: `[Your Representation]`)
151
+
152
+ **Reference Frame:**
153
+ - [x] **Robot Base Frame**
154
+ - [ ] **Tool/End-Effector Frame**
155
+ - [ ] **World/Global Frame**
156
+ - [ ] **Camera Frame**
157
+ - [ ] **Other** (Please specify: `[Your Frame]`)
158
+
159
+ **Action Dimensions:**
160
+
161
+ ```
162
+ action: [x, y, z, qx, qy, qz, qw, gripper]
163
+ - x, y, z: Absolute position in robot base frame (meters)
164
+ - qx, qy, qz, qw: Absolute orientation as quaternion
165
+ - gripper: Gripper opening angle (radians)
166
+ ```
167
+
168
+ ### State Space Representation
169
+
170
+ **State Information Included:**
171
+ - [ ] **Joint Positions** (all articulated joints)
172
+ - [ ] **Joint Velocities**
173
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
174
+ - [ ] **Force/Torque Readings**
175
+ - [x] **Gripper State** (position, force, etc.)
176
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
177
+
178
+ **State Dimensions:**
179
+
180
+ ```
181
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
182
+ - x, y, z: Absolute position in robot base frame (meters)
183
+ - qx, qy, qz, qw: Absolute orientation as quaternion
184
+ - gripper: Gripper opening angle (radians)
185
+ ```
186
+
187
+ ### 📋 Additional Representations
188
+
189
+ ---
190
+
191
+ ## ⏱️ Data Synchronization Approach
192
+
193
+
194
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
195
+
196
+ ---
197
+
198
+ ## 👥 Attribution & Contact
199
+
200
+
201
+ | | |
202
+ | :--- | :--- |
203
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
204
+ | **Institution** | `[Obuda University]` |
205
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
206
+ | **Citation (BibTeX)** | |
Surgical/obuda/pegtransfer_2/README.md ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations of a da Vinci robot performing peg transfer on a 3D printed model with silicone pegs.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform peg transfer. It includes successful trials, failures, and recovery attempts as well. One episode demonstrates the transfer of 1 peg.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `184` |
24
+ | **Total Hours** | `00:43:25` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Peg transfer
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `2` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-01-22]` to `[2026-01-23]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+
73
+ - The peg is not grasped accurately, the operator has to re-grasp the peg.
74
+ - Pegs are placed incorrectly onto the rods, the operator has to reposition.
75
+
76
+
77
+ ### Failure Demonstrations
78
+
79
+
80
+ - [X] **Yes**
81
+ - [ ] **No**
82
+
83
+ **If yes, please briefly describe the recovery process:**
84
+
85
+
86
+ - The peg falls out of the grasp.
87
+ - The tools hit the board and push it extensively.
88
+
89
+
90
+ ---
91
+
92
+ ## 💡 Diversity Dimensions
93
+
94
+
95
+ - [X] **Camera Position / Angle**
96
+ - [X] **Lighting Conditions**
97
+ - [ ] **Target Object**
98
+ - [ ] **Spatial Layout**
99
+ - [ ] **Robot Embodiment**
100
+ - [ ] **Task Execution**
101
+ - [X] **Background / Scene**
102
+ - [X] **Other** (Please specify: `Setup joints`)
103
+
104
+
105
+
106
+ Details:
107
+
108
+ - Endoscope lighting was changed throughout the trials
109
+ - Natural and ceiling background light changed
110
+ - Camera positon was varied
111
+ - Set up joint configuration was varied
112
+
113
+
114
+ ---
115
+
116
+ ## 🛠️ Equipment & Setup
117
+
118
+ ### Robotic Platform(s)
119
+
120
+
121
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
122
+
123
+ ### Sensors & Cameras
124
+
125
+
126
+ | Type | Model/Details |
127
+ | :--- | :--- |
128
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
129
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
130
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
131
+
132
+ ---
133
+
134
+ ## 🎯 Action & State Space Representation
135
+
136
+
137
+ ### Action Space Representation
138
+
139
+ **Primary Action Representation:**
140
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
141
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
142
+ - [ ] **Joint Space** (direct joint angle commands)
143
+ - [ ] **Other** (Please specify: `[Your Representation]`)
144
+
145
+ **Orientation Representation:**
146
+ - [x] **Quaternions** (x, y, z, w)
147
+ - [ ] **Euler Angles** (roll, pitch, yaw)
148
+ - [ ] **Axis-Angle** (rotation vector)
149
+ - [ ] **Rotation Matrix** (3x3 matrix)
150
+ - [ ] **Other** (Please specify: `[Your Representation]`)
151
+
152
+ **Reference Frame:**
153
+ - [x] **Robot Base Frame**
154
+ - [ ] **Tool/End-Effector Frame**
155
+ - [ ] **World/Global Frame**
156
+ - [ ] **Camera Frame**
157
+ - [ ] **Other** (Please specify: `[Your Frame]`)
158
+
159
+ **Action Dimensions:**
160
+
161
+ ```
162
+ action: [x, y, z, qx, qy, qz, qw, gripper]
163
+ - x, y, z: Absolute position in robot base frame (meters)
164
+ - qx, qy, qz, qw: Absolute orientation as quaternion
165
+ - gripper: Gripper opening angle (radians)
166
+ ```
167
+
168
+ ### State Space Representation
169
+
170
+ **State Information Included:**
171
+ - [ ] **Joint Positions** (all articulated joints)
172
+ - [ ] **Joint Velocities**
173
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
174
+ - [ ] **Force/Torque Readings**
175
+ - [x] **Gripper State** (position, force, etc.)
176
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
177
+
178
+ **State Dimensions:**
179
+
180
+ ```
181
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
182
+ - x, y, z: Absolute position in robot base frame (meters)
183
+ - qx, qy, qz, qw: Absolute orientation as quaternion
184
+ - gripper: Gripper opening angle (radians)
185
+ ```
186
+
187
+ ### 📋 Additional Representations
188
+
189
+ ---
190
+
191
+ ## ⏱️ Data Synchronization Approach
192
+
193
+
194
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
195
+
196
+ ---
197
+
198
+ ## 👥 Attribution & Contact
199
+
200
+
201
+ | | |
202
+ | :--- | :--- |
203
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
204
+ | **Institution** | `[Obuda University]` |
205
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
206
+ | **Citation (BibTeX)** | |
Surgical/obuda/pork_1/README.md ADDED
@@ -0,0 +1,204 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations of cutting small tissue samples from a fresh pork shoulder using the da Vinci robot.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novice operators using the dVRK to excise small tissue samples from fresh porcine shoulder. It includes successful trials, failures, and recovery attempts. One episode consists of tissue grasping, complete excision, and lifting of the resected sample.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `318` |
24
+ | **Total Hours** | `01:31:56` |
25
+ | **Data Type** | `[ ] Clinical` `[X] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Tissue grasping
43
+ - Tissue excision
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+
52
+ - [X] **Human Teleoperation**
53
+ - [ ] **Programmatic/State-Machine**
54
+ - [ ] **AI Policy / Autonomous**
55
+ - [ ] **Other** (Please specify)
56
+
57
+ ### Operator Details
58
+
59
+ | | Description |
60
+ | :--- | :--- |
61
+ | **Operator Count** | `3` |
62
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
63
+ | **Collection Period** | From `[2026-02-11]` to `[2026-02-13]` |
64
+
65
+ ### Recovery Demonstrations
66
+
67
+
68
+ - [X] **Yes**
69
+ - [ ] **No**
70
+
71
+ **If yes, please briefly describe the recovery process:**
72
+
73
+
74
+ - The tissue has to be re-grasped during the episode
75
+
76
+
77
+ ### Failure Demonstrations
78
+
79
+
80
+ - [X] **Yes**
81
+ - [ ] **No**
82
+
83
+ **If yes, please briefly describe the recovery process:**
84
+
85
+
86
+ - The tissue tears at an unintended location away from the intended cutting line.
87
+
88
+ ---
89
+
90
+ ## 💡 Diversity Dimensions
91
+
92
+
93
+ - [X] **Camera Position / Angle**
94
+ - [X] **Lighting Conditions**
95
+ - [ ] **Target Object**
96
+ - [ ] **Spatial Layout**
97
+ - [ ] **Robot Embodiment**
98
+ - [ ] **Task Execution**
99
+ - [ ] **Background / Scene**
100
+ - [X] **Other** (Please specify: `Setup joints`)
101
+
102
+
103
+
104
+ Details:
105
+
106
+ - Endoscope lighting was changed throughout the trials
107
+ - Natural and ceiling background light changed
108
+ - Camera positon was varied
109
+ - Set up joint configuration was varied
110
+
111
+
112
+ ---
113
+
114
+ ## 🛠️ Equipment & Setup
115
+
116
+ ### Robotic Platform(s)
117
+
118
+
119
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
120
+
121
+ ### Sensors & Cameras
122
+
123
+
124
+ | Type | Model/Details |
125
+ | :--- | :--- |
126
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
127
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
128
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
129
+
130
+ ---
131
+
132
+ ## 🎯 Action & State Space Representation
133
+
134
+
135
+ ### Action Space Representation
136
+
137
+ **Primary Action Representation:**
138
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
139
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
140
+ - [ ] **Joint Space** (direct joint angle commands)
141
+ - [ ] **Other** (Please specify: `[Your Representation]`)
142
+
143
+ **Orientation Representation:**
144
+ - [x] **Quaternions** (x, y, z, w)
145
+ - [ ] **Euler Angles** (roll, pitch, yaw)
146
+ - [ ] **Axis-Angle** (rotation vector)
147
+ - [ ] **Rotation Matrix** (3x3 matrix)
148
+ - [ ] **Other** (Please specify: `[Your Representation]`)
149
+
150
+ **Reference Frame:**
151
+ - [x] **Robot Base Frame**
152
+ - [ ] **Tool/End-Effector Frame**
153
+ - [ ] **World/Global Frame**
154
+ - [ ] **Camera Frame**
155
+ - [ ] **Other** (Please specify: `[Your Frame]`)
156
+
157
+ **Action Dimensions:**
158
+
159
+ ```
160
+ action: [x, y, z, qx, qy, qz, qw, gripper]
161
+ - x, y, z: Absolute position in robot base frame (meters)
162
+ - qx, qy, qz, qw: Absolute orientation as quaternion
163
+ - gripper: Gripper opening angle (radians)
164
+ ```
165
+
166
+ ### State Space Representation
167
+
168
+ **State Information Included:**
169
+ - [ ] **Joint Positions** (all articulated joints)
170
+ - [ ] **Joint Velocities**
171
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
172
+ - [ ] **Force/Torque Readings**
173
+ - [x] **Gripper State** (position, force, etc.)
174
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
175
+
176
+ **State Dimensions:**
177
+
178
+ ```
179
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
180
+ - x, y, z: Absolute position in robot base frame (meters)
181
+ - qx, qy, qz, qw: Absolute orientation as quaternion
182
+ - gripper: Gripper opening angle (radians)
183
+ ```
184
+
185
+ ### 📋 Additional Representations
186
+
187
+ ---
188
+
189
+ ## ⏱️ Data Synchronization Approach
190
+
191
+
192
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
193
+
194
+ ---
195
+
196
+ ## 👥 Attribution & Contact
197
+
198
+
199
+ | | |
200
+ | :--- | :--- |
201
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Tamás Haidegger]` |
202
+ | **Institution** | `[Obuda University]` |
203
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
204
+ | **Citation (BibTeX)** | |
Surgical/obuda/rollercoaster_1/README.md ADDED
@@ -0,0 +1,199 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "rollercoaster" (or "hot wire") surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "rollercoaster" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode lasts from grasping the ring until releasing it at the other end of the wire.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `95` |
24
+ | **Total Hours** | `01:12:22` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Spatial navigation
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `3` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-01-28]` to `[2026-01-29]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The ring needs to be re-grasped or re-aligned
73
+
74
+
75
+ ### Failure Demonstrations
76
+
77
+
78
+ - [X] **Yes**
79
+ - [ ] **No**
80
+
81
+ **If yes, please briefly describe the failures:**
82
+
83
+ - Tool collision
84
+ - Extensively moving the board
85
+
86
+
87
+ ---
88
+
89
+ ## 💡 Diversity Dimensions
90
+
91
+
92
+ - [X] **Camera Position / Angle**
93
+ - [X] **Lighting Conditions**
94
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
95
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
96
+ - [ ] **Robot Embodiment** (if multiple robots were used)
97
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
98
+ - [X] **Background / Scene** (different colors in the background)
99
+ - [X] **Other** (Please specify: `[Setup joints]`)
100
+
101
+ *If you checked any of the above please briefly elaborate below.*
102
+
103
+ - Endoscope lighting was changed throughout the trials
104
+ - Camera positon was varied
105
+ - Set up joint configuration was varied
106
+ - The board's position and orientation were varied
107
+
108
+ ---
109
+
110
+ ## 🛠️ Equipment & Setup
111
+
112
+ ### Robotic Platform(s)
113
+
114
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
115
+
116
+ ### Sensors & Cameras
117
+
118
+
119
+ | Type | Model/Details |
120
+ | :--- | :--- |
121
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
122
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
123
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
124
+
125
+ ---
126
+
127
+ ## 🎯 Action & State Space Representation
128
+
129
+
130
+ ### Action Space Representation
131
+
132
+ **Primary Action Representation:**
133
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
134
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
135
+ - [ ] **Joint Space** (direct joint angle commands)
136
+ - [ ] **Other** (Please specify: `[Your Representation]`)
137
+
138
+ **Orientation Representation:**
139
+ - [x] **Quaternions** (x, y, z, w)
140
+ - [ ] **Euler Angles** (roll, pitch, yaw)
141
+ - [ ] **Axis-Angle** (rotation vector)
142
+ - [ ] **Rotation Matrix** (3x3 matrix)
143
+ - [ ] **Other** (Please specify: `[Your Representation]`)
144
+
145
+ **Reference Frame:**
146
+ - [x] **Robot Base Frame**
147
+ - [ ] **Tool/End-Effector Frame**
148
+ - [ ] **World/Global Frame**
149
+ - [ ] **Camera Frame**
150
+ - [ ] **Other** (Please specify: `[Your Frame]`)
151
+
152
+ **Action Dimensions:**
153
+
154
+ ```
155
+ action: [x, y, z, qx, qy, qz, qw, gripper]
156
+ - x, y, z: Absolute position in robot base frame (meters)
157
+ - qx, qy, qz, qw: Absolute orientation as quaternion
158
+ - gripper: Gripper opening angle (radians)
159
+ ```
160
+
161
+ ### State Space Representation
162
+
163
+ **State Information Included:**
164
+ - [ ] **Joint Positions** (all articulated joints)
165
+ - [ ] **Joint Velocities**
166
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
167
+ - [ ] **Force/Torque Readings**
168
+ - [x] **Gripper State** (position, force, etc.)
169
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
170
+
171
+ **State Dimensions:**
172
+
173
+ ```
174
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
175
+ - x, y, z: Absolute position in robot base frame (meters)
176
+ - qx, qy, qz, qw: Absolute orientation as quaternion
177
+ - gripper: Gripper opening angle (radians)
178
+ ```
179
+
180
+ ### 📋 Additional Representations
181
+
182
+ ---
183
+
184
+ ## ⏱️ Data Synchronization Approach
185
+
186
+
187
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
188
+
189
+ ---
190
+
191
+ ## 👥 Attribution & Contact
192
+
193
+
194
+ | | |
195
+ | :--- | :--- |
196
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
197
+ | **Institution** | `[Obuda University]` |
198
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
199
+ | **Citation (BibTeX)** | |
Surgical/obuda/seaspike_1/README.md ADDED
@@ -0,0 +1,200 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "seaspike" surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "seaspike" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode lasts from picking up a ring until placing it on a spike.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `207` |
24
+ | **Total Hours** | `00:49:36` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Ring transfer
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `2` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-01-28]` to `[2026-01-29]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The ring has to be re-grasped at pickup
73
+ - The ring misses the peak of the spike for the first try, but is not dropped down
74
+
75
+
76
+ ### Failure Demonstrations
77
+
78
+
79
+ - [X] **Yes**
80
+ - [ ] **No**
81
+
82
+ **If yes, please briefly describe the failures:**
83
+
84
+ - The ring is misplaced, dropped down
85
+
86
+ ---
87
+
88
+ ## 💡 Diversity Dimensions
89
+
90
+
91
+ - [X] **Camera Position / Angle**
92
+ - [X] **Lighting Conditions**
93
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
94
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
95
+ - [ ] **Robot Embodiment** (if multiple robots were used)
96
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
97
+ - [X] **Background / Scene** (different colors in the background)
98
+ - [X] **Other** (Please specify: `[Setup joints]`)
99
+
100
+ *If you checked any of the above please briefly elaborate below.*
101
+
102
+ - Endoscope lighting was changed throughout the trials
103
+ - Camera positon was varied
104
+ - Set up joint configuration was varied
105
+ - Background changes
106
+ - The board's orientation (i.e., the position of the spikes) was varied
107
+
108
+
109
+ ---
110
+
111
+ ## 🛠️ Equipment & Setup
112
+
113
+ ### Robotic Platform(s)
114
+
115
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
116
+
117
+ ### Sensors & Cameras
118
+
119
+
120
+ | Type | Model/Details |
121
+ | :--- | :--- |
122
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
123
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
124
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
125
+
126
+ ---
127
+
128
+ ## 🎯 Action & State Space Representation
129
+
130
+
131
+ ### Action Space Representation
132
+
133
+ **Primary Action Representation:**
134
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
135
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
136
+ - [ ] **Joint Space** (direct joint angle commands)
137
+ - [ ] **Other** (Please specify: `[Your Representation]`)
138
+
139
+ **Orientation Representation:**
140
+ - [x] **Quaternions** (x, y, z, w)
141
+ - [ ] **Euler Angles** (roll, pitch, yaw)
142
+ - [ ] **Axis-Angle** (rotation vector)
143
+ - [ ] **Rotation Matrix** (3x3 matrix)
144
+ - [ ] **Other** (Please specify: `[Your Representation]`)
145
+
146
+ **Reference Frame:**
147
+ - [x] **Robot Base Frame**
148
+ - [ ] **Tool/End-Effector Frame**
149
+ - [ ] **World/Global Frame**
150
+ - [ ] **Camera Frame**
151
+ - [ ] **Other** (Please specify: `[Your Frame]`)
152
+
153
+ **Action Dimensions:**
154
+
155
+ ```
156
+ action: [x, y, z, qx, qy, qz, qw, gripper]
157
+ - x, y, z: Absolute position in robot base frame (meters)
158
+ - qx, qy, qz, qw: Absolute orientation as quaternion
159
+ - gripper: Gripper opening angle (radians)
160
+ ```
161
+
162
+ ### State Space Representation
163
+
164
+ **State Information Included:**
165
+ - [ ] **Joint Positions** (all articulated joints)
166
+ - [ ] **Joint Velocities**
167
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
168
+ - [ ] **Force/Torque Readings**
169
+ - [x] **Gripper State** (position, force, etc.)
170
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
171
+
172
+ **State Dimensions:**
173
+
174
+ ```
175
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
176
+ - x, y, z: Absolute position in robot base frame (meters)
177
+ - qx, qy, qz, qw: Absolute orientation as quaternion
178
+ - gripper: Gripper opening angle (radians)
179
+ ```
180
+
181
+ ### 📋 Additional Representations
182
+
183
+ ---
184
+
185
+ ## ⏱️ Data Synchronization Approach
186
+
187
+
188
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
189
+
190
+ ---
191
+
192
+ ## 👥 Attribution & Contact
193
+
194
+
195
+ | | |
196
+ | :--- | :--- |
197
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
198
+ | **Institution** | `[Obuda University]` |
199
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
200
+ | **Citation (BibTeX)** | |
Surgical/obuda/seaspike_2/README.md ADDED
@@ -0,0 +1,200 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "seaspike" surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "seaspike" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode lasts from picking up a ring until placing it on a spike.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `153` |
24
+ | **Total Hours** | `00:37:35` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Ring transfer
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `2` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-02-04]` to `[2026-02-06]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The ring has to be re-grasped at pickup
73
+ - The ring misses the peak of the spike for the first try, but is not dropped down
74
+
75
+
76
+ ### Failure Demonstrations
77
+
78
+
79
+ - [X] **Yes**
80
+ - [ ] **No**
81
+
82
+ **If yes, please briefly describe the failures:**
83
+
84
+ - The ring is misplaced, dropped down
85
+
86
+ ---
87
+
88
+ ## 💡 Diversity Dimensions
89
+
90
+
91
+ - [X] **Camera Position / Angle**
92
+ - [X] **Lighting Conditions**
93
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
94
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
95
+ - [ ] **Robot Embodiment** (if multiple robots were used)
96
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
97
+ - [X] **Background / Scene** (different colors in the background)
98
+ - [X] **Other** (Please specify: `[Setup joints]`)
99
+
100
+ *If you checked any of the above please briefly elaborate below.*
101
+
102
+ - Endoscope lighting was changed throughout the trials
103
+ - Camera positon was varied
104
+ - Set up joint configuration was varied
105
+ - Background changes
106
+ - The board's orientation (i.e., the position of the spikes) was varied
107
+
108
+
109
+ ---
110
+
111
+ ## 🛠️ Equipment & Setup
112
+
113
+ ### Robotic Platform(s)
114
+
115
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
116
+
117
+ ### Sensors & Cameras
118
+
119
+
120
+ | Type | Model/Details |
121
+ | :--- | :--- |
122
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
123
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
124
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
125
+
126
+ ---
127
+
128
+ ## 🎯 Action & State Space Representation
129
+
130
+
131
+ ### Action Space Representation
132
+
133
+ **Primary Action Representation:**
134
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
135
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
136
+ - [ ] **Joint Space** (direct joint angle commands)
137
+ - [ ] **Other** (Please specify: `[Your Representation]`)
138
+
139
+ **Orientation Representation:**
140
+ - [x] **Quaternions** (x, y, z, w)
141
+ - [ ] **Euler Angles** (roll, pitch, yaw)
142
+ - [ ] **Axis-Angle** (rotation vector)
143
+ - [ ] **Rotation Matrix** (3x3 matrix)
144
+ - [ ] **Other** (Please specify: `[Your Representation]`)
145
+
146
+ **Reference Frame:**
147
+ - [x] **Robot Base Frame**
148
+ - [ ] **Tool/End-Effector Frame**
149
+ - [ ] **World/Global Frame**
150
+ - [ ] **Camera Frame**
151
+ - [ ] **Other** (Please specify: `[Your Frame]`)
152
+
153
+ **Action Dimensions:**
154
+
155
+ ```
156
+ action: [x, y, z, qx, qy, qz, qw, gripper]
157
+ - x, y, z: Absolute position in robot base frame (meters)
158
+ - qx, qy, qz, qw: Absolute orientation as quaternion
159
+ - gripper: Gripper opening angle (radians)
160
+ ```
161
+
162
+ ### State Space Representation
163
+
164
+ **State Information Included:**
165
+ - [ ] **Joint Positions** (all articulated joints)
166
+ - [ ] **Joint Velocities**
167
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
168
+ - [ ] **Force/Torque Readings**
169
+ - [x] **Gripper State** (position, force, etc.)
170
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
171
+
172
+ **State Dimensions:**
173
+
174
+ ```
175
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
176
+ - x, y, z: Absolute position in robot base frame (meters)
177
+ - qx, qy, qz, qw: Absolute orientation as quaternion
178
+ - gripper: Gripper opening angle (radians)
179
+ ```
180
+
181
+ ### 📋 Additional Representations
182
+
183
+ ---
184
+
185
+ ## ⏱️ Data Synchronization Approach
186
+
187
+
188
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
189
+
190
+ ---
191
+
192
+ ## 👥 Attribution & Contact
193
+
194
+
195
+ | | |
196
+ | :--- | :--- |
197
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
198
+ | **Institution** | `[Obuda University]` |
199
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
200
+ | **Citation (BibTeX)** | |
Surgical/obuda/seaspike_3/README.md ADDED
@@ -0,0 +1,200 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations with a da Vinci robot performing the "seaspike" surgical practice task.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains trajectories of novices using the dVRK to perform the "seaspike" surgical practice task. It includes successful trials, failures, and recovery attempts as well. One episode lasts from picking up a ring until placing it on a spike.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `219` |
24
+ | **Total Hours** | `00:57:12` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Ring transfer
43
+
44
+ ---
45
+
46
+ ## 🔬 Data Collection Details
47
+
48
+ ### Collection Method
49
+
50
+
51
+ - [X] **Human Teleoperation**
52
+ - [ ] **Programmatic/State-Machine**
53
+ - [ ] **AI Policy / Autonomous**
54
+ - [ ] **Other** (Please specify)
55
+
56
+ ### Operator Details
57
+
58
+ | | Description |
59
+ | :--- | :--- |
60
+ | **Operator Count** | `2` |
61
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[X] Intermediate (e.g., Trained Researcher)` <br> `[X] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
62
+ | **Collection Period** | From `[2026-02-06]` to `[2026-02-09]` |
63
+
64
+ ### Recovery Demonstrations
65
+
66
+
67
+ - [X] **Yes**
68
+ - [ ] **No**
69
+
70
+ **If yes, please briefly describe the recovery process:**
71
+
72
+ - The ring has to be re-grasped at pickup
73
+ - The ring misses the peak of the spike for the first try, but is not dropped down
74
+
75
+
76
+ ### Failure Demonstrations
77
+
78
+
79
+ - [X] **Yes**
80
+ - [ ] **No**
81
+
82
+ **If yes, please briefly describe the failures:**
83
+
84
+ - The ring is misplaced, dropped down
85
+
86
+ ---
87
+
88
+ ## 💡 Diversity Dimensions
89
+
90
+
91
+ - [X] **Camera Position / Angle**
92
+ - [X] **Lighting Conditions**
93
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
94
+ - [X] **Spatial Layout** (Varying starting positions and board placement )
95
+ - [ ] **Robot Embodiment** (if multiple robots were used)
96
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
97
+ - [X] **Background / Scene** (different colors in the background)
98
+ - [X] **Other** (Please specify: `[Setup joints]`)
99
+
100
+ *If you checked any of the above please briefly elaborate below.*
101
+
102
+ - Endoscope lighting was changed throughout the trials
103
+ - Camera positon was varied
104
+ - Set up joint configuration was varied
105
+ - Background changes
106
+ - The board's orientation (i.e., the position of the spikes) was varied
107
+
108
+
109
+ ---
110
+
111
+ ## 🛠️ Equipment & Setup
112
+
113
+ ### Robotic Platform(s)
114
+
115
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
116
+
117
+ ### Sensors & Cameras
118
+
119
+
120
+ | Type | Model/Details |
121
+ | :--- | :--- |
122
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
123
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
124
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
125
+
126
+ ---
127
+
128
+ ## 🎯 Action & State Space Representation
129
+
130
+
131
+ ### Action Space Representation
132
+
133
+ **Primary Action Representation:**
134
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
135
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
136
+ - [ ] **Joint Space** (direct joint angle commands)
137
+ - [ ] **Other** (Please specify: `[Your Representation]`)
138
+
139
+ **Orientation Representation:**
140
+ - [x] **Quaternions** (x, y, z, w)
141
+ - [ ] **Euler Angles** (roll, pitch, yaw)
142
+ - [ ] **Axis-Angle** (rotation vector)
143
+ - [ ] **Rotation Matrix** (3x3 matrix)
144
+ - [ ] **Other** (Please specify: `[Your Representation]`)
145
+
146
+ **Reference Frame:**
147
+ - [x] **Robot Base Frame**
148
+ - [ ] **Tool/End-Effector Frame**
149
+ - [ ] **World/Global Frame**
150
+ - [ ] **Camera Frame**
151
+ - [ ] **Other** (Please specify: `[Your Frame]`)
152
+
153
+ **Action Dimensions:**
154
+
155
+ ```
156
+ action: [x, y, z, qx, qy, qz, qw, gripper]
157
+ - x, y, z: Absolute position in robot base frame (meters)
158
+ - qx, qy, qz, qw: Absolute orientation as quaternion
159
+ - gripper: Gripper opening angle (radians)
160
+ ```
161
+
162
+ ### State Space Representation
163
+
164
+ **State Information Included:**
165
+ - [ ] **Joint Positions** (all articulated joints)
166
+ - [ ] **Joint Velocities**
167
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
168
+ - [ ] **Force/Torque Readings**
169
+ - [x] **Gripper State** (position, force, etc.)
170
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
171
+
172
+ **State Dimensions:**
173
+
174
+ ```
175
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
176
+ - x, y, z: Absolute position in robot base frame (meters)
177
+ - qx, qy, qz, qw: Absolute orientation as quaternion
178
+ - gripper: Gripper opening angle (radians)
179
+ ```
180
+
181
+ ### 📋 Additional Representations
182
+
183
+ ---
184
+
185
+ ## ⏱️ Data Synchronization Approach
186
+
187
+
188
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
189
+
190
+ ---
191
+
192
+ ## 👥 Attribution & Contact
193
+
194
+
195
+ | | |
196
+ | :--- | :--- |
197
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, Lóránt Domokos, Tamás Haidegger]` |
198
+ | **Institution** | `[Obuda University]` |
199
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, lorant.domokos@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
200
+ | **Citation (BibTeX)** | |
Surgical/obuda/skinphantom_1/README.md ADDED
@@ -0,0 +1,217 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ Teleoperated demonstrations of a da Vinci robot performing interrupted suturing on a skin phantom, including needle driving and knot tying.
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ This dataset contains teleoperated trajectories of an expert operator (da Vinci certified surgeon) performing wound closure on a skin phantom using the da Vinci Robot. The 4 subtasks capture the execution of a single interrupted stitch, including needle insertion (subtask 0), complete suture pull-through (subtask 1), and knot tying consisting of one surgeon’s knot (subtask 2) followed by two securing throws (subtask 3). The dataset includes successful trials, failure cases, and recovery attempts too.
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `106` |
24
+ | **Total Hours** | `00:23:19` |
25
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[X] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+
36
+ - [X] **Surgical Robotics**
37
+ - [ ] **Ultrasound Robotics**
38
+ - [ ] **Other Healthcare Robotics**
39
+
40
+ ### Demonstrated Skills
41
+
42
+ - Needle driving
43
+ - Tissue approximation
44
+ - Knot tying
45
+
46
+ ---
47
+
48
+ ## 🔬 Data Collection Details
49
+
50
+ ### Collection Method
51
+
52
+
53
+ - [X] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `1` |
63
+ | **Operator Skill Level** | `[X] Expert (da Vinci certified surgeon)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | `[2026-02-11]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+
69
+ - [X] **Yes**
70
+ - [ ] **No**
71
+
72
+ **If yes, please briefly describe the recovery process:**
73
+
74
+ - Needle Insertion:
75
+ - Loss of needle grip (needle dropped)
76
+ - Needle fails to pass through the tissue on the first attempt
77
+
78
+ - Suture Pulling:
79
+ - Misgrasping the suture
80
+
81
+ - Single and Double Knot:
82
+ - Misgrasping the suture
83
+ - Suture became caught on the tool, but was successfully freed
84
+ - Dropping the suture
85
+
86
+ ### Failure Demonstrations
87
+
88
+ - [X] **Yes**
89
+ - [ ] **No**
90
+
91
+ **If yes, please briefly describe the failure process:**
92
+
93
+ - Needle Insertion: not distinguished
94
+
95
+ - Suture Pulling: not distinguished
96
+
97
+ - Single and Double Knot:
98
+ - Knot was tied directly onto the suture
99
+
100
+
101
+ ---
102
+
103
+ ## 💡 Diversity Dimensions
104
+
105
+
106
+ - [X] **Camera Position / Angle**
107
+ - [X] **Lighting Conditions**
108
+ - [ ] **Target Object**
109
+ - [ ] **Spatial Layout**
110
+ - [ ] **Robot Embodiment**
111
+ - [ ] **Task Execution**
112
+ - [ ] **Background / Scene**
113
+ - [X] **Other** (Please specify: `Thread length`)
114
+
115
+
116
+
117
+ Details:
118
+
119
+ - Endoscope lighting was changed throughout the trials
120
+ - Natural and ceiling background light changed
121
+ - Camera positon was varied
122
+ - Thread length varied
123
+
124
+
125
+ ---
126
+
127
+ ## 🛠️ Equipment & Setup
128
+
129
+ ### Robotic Platform(s)
130
+
131
+
132
+ - **Robot 1:** da Vinci Classic (with da Vinci Research Kit)
133
+
134
+ ### Sensors & Cameras
135
+
136
+
137
+ | Type | Model/Details |
138
+ | :--- | :--- |
139
+ | **Primary Camera** | `Stereo Endoscopic Camera, 720x576 @ 30fps` |
140
+ | **Wrist Camera** | `Endoscopic Camera (x2), 640x480 @ 30fps` |
141
+ | **Realsense Camera** | `Realsense RGB + D Camera, 1280x720 @ 30fps` |
142
+
143
+ ---
144
+
145
+ ## 🎯 Action & State Space Representation
146
+
147
+
148
+ ### Action Space Representation
149
+
150
+ **Primary Action Representation:**
151
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
152
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
153
+ - [ ] **Joint Space** (direct joint angle commands)
154
+ - [ ] **Other** (Please specify: `[Your Representation]`)
155
+
156
+ **Orientation Representation:**
157
+ - [x] **Quaternions** (x, y, z, w)
158
+ - [ ] **Euler Angles** (roll, pitch, yaw)
159
+ - [ ] **Axis-Angle** (rotation vector)
160
+ - [ ] **Rotation Matrix** (3x3 matrix)
161
+ - [ ] **Other** (Please specify: `[Your Representation]`)
162
+
163
+ **Reference Frame:**
164
+ - [x] **Robot Base Frame**
165
+ - [ ] **Tool/End-Effector Frame**
166
+ - [ ] **World/Global Frame**
167
+ - [ ] **Camera Frame**
168
+ - [ ] **Other** (Please specify: `[Your Frame]`)
169
+
170
+ **Action Dimensions:**
171
+
172
+ ```
173
+ action: [x, y, z, qx, qy, qz, qw, gripper]
174
+ - x, y, z: Absolute position in robot base frame (meters)
175
+ - qx, qy, qz, qw: Absolute orientation as quaternion
176
+ - gripper: Gripper opening angle (radians)
177
+ ```
178
+
179
+ ### State Space Representation
180
+
181
+ **State Information Included:**
182
+ - [ ] **Joint Positions** (all articulated joints)
183
+ - [ ] **Joint Velocities**
184
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
185
+ - [ ] **Force/Torque Readings**
186
+ - [x] **Gripper State** (position, force, etc.)
187
+ - [x] **Other** (Please specify: `[Set Up Joints Configuration], [Camera Pose]`)
188
+
189
+ **State Dimensions:**
190
+
191
+ ```
192
+ observation.state: [x, y, z, qx, qy, qz, qw, gripper]
193
+ - x, y, z: Absolute position in robot base frame (meters)
194
+ - qx, qy, qz, qw: Absolute orientation as quaternion
195
+ - gripper: Gripper opening angle (radians)
196
+ ```
197
+
198
+ ### 📋 Additional Representations
199
+
200
+ ---
201
+
202
+ ## ⏱️ Data Synchronization Approach
203
+
204
+
205
+ *Each modality (DeckLink cameras, USB cameras, and robotic kinematics) was recorded time-stamped on the same PC. A post-processing synchronization script segmented trials using explicit start/end markers and used the kinematic time series as the reference timeline. For each kinematic timestamp, the temporally nearest image frame from each camera stream was selected. The original stereoendoscope of the system is capable of only ~20FPS, thus the <50ms delay can not always be ensured.*
206
+
207
+ ---
208
+
209
+ ## 👥 Attribution & Contact
210
+
211
+
212
+ | | |
213
+ | :--- | :--- |
214
+ | **Dataset Lead** | `[Kristóf Takács, Eszter Lukács, László Piros, Tamás Haidegger]` |
215
+ | **Institution** | `[Obuda University]` |
216
+ | **Contact Email** | `[krsitof.takacs@irob.uni-obuda.hu, eszter.lukacs@irob.uni-obuda.hu, haidegger@irob.uni-obuda.hu]` |
217
+ | **Citation (BibTeX)** | |
Surgical/semaphor/open_h_semaphor/README.md ADDED
@@ -0,0 +1,175 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # [Dataset Name] - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Our dataset is dataset with tracked neural surgery tools doing suturing on ex-vivo pork belly*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 500 trajectories of expert surgeons using neural surgery tool to perform surgical suturing tasks. It includes successful trials to provide a robust dataset for training imitation learning policies*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `534` |
24
+ | **Total Hours** | `0.5 hours` |
25
+ | **Data Type** | `[ ] Clinical` `[ X ] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [X] **Surgical Robotics**
38
+ - [ ] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Needle-passing
44
+ - Needle-Grasping
45
+ - Needle-handover
46
+ - Suture-tying
47
+
48
+ ---
49
+
50
+ ## 🔬 Data Collection Details
51
+
52
+ ### Collection Method
53
+
54
+ *How was the data collected?*
55
+
56
+ - [ ] **Human Teleoperation**
57
+ - [ ] **Programmatic/State-Machine**
58
+ - [ ] **AI Policy / Autonomous**
59
+ - [X] **Other** (Please specify: `Direct Human Operation`)
60
+
61
+ ### Operator Details
62
+
63
+ | | Description |
64
+ | :--- | :--- |
65
+ | **Operator Count** | `[1]` |
66
+ | **Operator Skill Level** | `[X] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
67
+ | **Collection Period** | From `[2025-01-10]` to `[2025-01-28]` |
68
+
69
+ ### Recovery Demonstrations
70
+
71
+ *Does this dataset include examples of recovering from failure?*
72
+
73
+ - [ ] **Yes**
74
+ - [X] **No**
75
+
76
+ **If yes, please briefly describe the recovery process:**
77
+
78
+ ---
79
+
80
+ ## 💡 Diversity Dimensions
81
+
82
+ *Check all dimensions that were intentionally varied during data collection.*
83
+
84
+ - [ ] **Camera Position / Angle**
85
+ - [ ] **Lighting Conditions**
86
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
87
+ - [ ] **Spatial Layout** (e.g., placing the target suture needle in various locations)
88
+ - [ ] **Robot Embodiment** (if multiple robots were used)
89
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
90
+ - [ ] **Background / Scene**
91
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
92
+
93
+ *If you checked any of the above please briefly elaborate below.*
94
+
95
+ ---
96
+
97
+ ## 🛠️ Equipment & Setup
98
+
99
+ ### Robotic Platform(s)
100
+
101
+ *Manual Neural Surgery Tool*
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[Zed X camera, 1920x1080 @ 30fps]` |
110
+ | **Side Camera (left)** | `[Zed X camera, 1920x1080 @ 30fps]` |
111
+ | **Side Camera (right)** | `[Zed X camera, 1920x1080 @ 30fps]` |
112
+
113
+ ---
114
+
115
+ ## 🎯 Action & State Space Representation
116
+
117
+ ### Action Space Representation
118
+
119
+ **Primary Action Representation:**
120
+ - [X] **Absolute Cartesian** (position/orientation relative to robot base)
121
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
122
+ - [ ] **Joint Space** (direct joint angle commands)
123
+ - [ ] **Other** (Please specify: `[Your Representation]`)
124
+
125
+ **Orientation Representation:**
126
+ - [ ] **Quaternions** (x, y, z, w)
127
+ - [X] **Euler Angles** (roll, pitch, yaw)
128
+ - [ ] **Axis-Angle** (rotation vector)
129
+ - [ ] **Rotation Matrix** (3x3 matrix)
130
+ - [ ] **Other** (Please specify: `[Your Representation]`)
131
+
132
+ **Reference Frame:**
133
+ - [ ] **Robot Base Frame**
134
+ - [ ] **Tool/End-Effector Frame**
135
+ - [ ] **World/Global Frame**
136
+ - [X] **Camera Frame**
137
+ - [ ] **Other** (Please specify: `[Your Frame]`)
138
+
139
+ **Action Dimensions:**
140
+ *Action is represented as the pose of (x_0,y_0,z_0,roll_0,pitch_0,yall_0,valid_0,x_1,y_1,z_1,roll_1,pitch_1,yall_1,valid_1) with subscripts as tool id. valid means whether this pose for the tool is valid in this frame*
141
+
142
+
143
+ ### State Space Representation
144
+
145
+ **State Information Included:**
146
+ - [ ] **Joint Positions** (all articulated joints)
147
+ - [ ] **Joint Velocities**
148
+ - [X] **End-Effector Pose** (Cartesian position/orientation)
149
+ - [ ] **Force/Torque Readings**
150
+ - [ ] **Gripper State** (position, force, etc.)
151
+ - [ ] **Other** (Please specify: `[Your State Info]`)
152
+
153
+ **State Dimensions:**
154
+
155
+ *State is represented as the pose of (x_0,y_0,z_0,roll_0,pitch_0,yall_0,valid_0,x_1,y_1,z_1,roll_1,pitch_1,yall_1,valid_1) with subscripts as tool id. valid means whether this pose for the tool is valid in this frame.*
156
+
157
+
158
+ ---
159
+
160
+ ## ⏱️ Data Synchronization Approach
161
+
162
+ *We have the timestamp from all cameras, we set the main camera as anchor, for each frame in the main camera, each side cameras choose the frame with closest timestamp as the symchromnized frame.*
163
+
164
+ ---
165
+
166
+ ## 👥 Attribution & Contact
167
+
168
+ *Please provide attribution for the dataset creators and a point of contact.*
169
+
170
+ | | |
171
+ | :--- | :--- |
172
+ | **Dataset Lead** | `[Hao Ding]` |
173
+ | **Institution** | `[Semaphor Surgical]` |
174
+ | **Contact Email** | `[hao@semaphorsurgical.com]` |
175
+ | **Citation (BibTeX)** | <pre><code>@misc{[SemaphorSuture],<br> author = {[Hao Ding, Chenhao Yu, Chenhao Yu, Zoe Soulé, Jose Porras, Axel Krieger, Mathias Unberath]},<br> title = {[Semaphor Suturing Dataset]},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/needle_transfer/README.md ADDED
@@ -0,0 +1,232 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Needle Transfer - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of the da Vinci Si robot performing needle transfer with a suturing needle.*
14
+
15
+ <!--
16
+ **Example:** *Teleoperated demonstrations of a da Vinci robot performing needle passing on a silicone phantom.*
17
+ -->
18
+
19
+ ---
20
+
21
+ ## 📖 Dataset Description
22
+
23
+ <!--
24
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
25
+
26
+ **Example:** *This dataset contains 2,500 trajectories of expert surgeons using the dVRK to perform surgical suturing tasks. It includes successful trials, failures, and recovery attempts to provide a robust dataset for training imitation learning policies.*
27
+ -->
28
+ The dataset comprises 700 dVRK trajectories of needle transfer performed on a table top phantom, including successful trials, failures, and recovery attempts. It provides synchronized cartesian, joint and video data for training and evaluating robot learning policies. NOTE: The initial few episodes are a little zoomed out but the positioning of the camera is much closer after 100 episodes.
29
+
30
+
31
+ | | |
32
+ | :--- | :--- |
33
+ | **Total Trajectories** | `700` |
34
+ | **Total Hours** | `2.9` |
35
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[x] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
36
+ | **License** | CC BY 4.0 |
37
+ | **Version** | `[e.g., 1.0]` |
38
+
39
+ ---
40
+
41
+ ## 🎯 Tasks & Domain
42
+
43
+ ### Domain
44
+
45
+ *Select the primary domain for this dataset.*
46
+
47
+ - [x] **Surgical Robotics**
48
+ - [ ] **Ultrasound Robotics**
49
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
50
+
51
+ ### Demonstrated Skills
52
+
53
+ *List the primary skills or procedures demonstrated in this dataset.*
54
+ - Needle Pickup
55
+ - Needle Passing
56
+ - Needle Collection
57
+
58
+ <!--
59
+ ***Example:***
60
+ - Needle-passing
61
+ - Suture-tying
62
+ - ...
63
+ -->
64
+ ---
65
+
66
+ ## 🔬 Collection Procedure
67
+
68
+ ### Collection Method
69
+
70
+ *How was the data collected?*
71
+
72
+ - [x] **Human Teleoperation**
73
+ - [ ] **Programmatic/State-Machine**
74
+ - [ ] **AI Policy / Autonomous**
75
+ - [ ] **Other** (Please specify: `[Your Method]`)
76
+
77
+ ### Operator Details
78
+
79
+ | | Description |
80
+ | :--- | :--- |
81
+ | **Operator Count** | `1` |
82
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[x] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
83
+ | **Collection Period** | From `[2025-10-01]` to `[2025-01-15]` |
84
+
85
+ ### Recovery Demonstrations
86
+
87
+ *Does this dataset include examples of recovering from failure?*
88
+
89
+ - [x] **Yes**
90
+ - [ ] **No**
91
+
92
+ **If yes, please briefly describe the recovery process:**
93
+ The dataset includes 25 recovery demonstrations and 75 failure demonstrations. In the failure cases, the robotic arm fails to achieve a grasp or drops while passing. In the recovery cases, the arm grasps the object with an incorrect orientation for passing, after which the operator re-orients the grasp before completing the pass.
94
+
95
+ <!--
96
+ *Example: For 250 demonstrations, demonstrations are initialized from a failed needle grasp position, the operator re-orients the robotic grippers and attempts to grasp the needle again from a different angle.*
97
+ -->
98
+ ---
99
+
100
+ ## 💡 Diversity Dimensions
101
+
102
+ *Check all dimensions that were intentionally varied during data collection.*
103
+
104
+ - [x] **Camera Position / Angle**
105
+ - [x] **Lighting Conditions**
106
+ - [x] **Target Object** (e.g., different phantom models, suture types)
107
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
108
+ - [ ] **Robot Embodiment** (if multiple robots were used)
109
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
110
+ - [ ] **Background / Scene**
111
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
112
+
113
+ *If you checked any of the above please briefly elaborate below.*
114
+ The camera configuration was adjusted every 50–100 demonstrations by varying the setup height by ±2 cm. In addition, the needle type and phantom base were changed periodically. Lighting conditions were varied between 60% and 100%. Each demonstration also features a slightly different needle pickup location.
115
+ <!--
116
+
117
+ **Example:** We adjusted the room camera perspective every 100 demonstrations. The camera angle was varied by panning up and down by +/- 10 degrees, as well as manually adjusting the height of the camera mount by +/- 2 cm. Additionally, we varied the needle used by swapping out various curvatures, including 1/4, 3/8, 1/2, and 5/8.
118
+ -->
119
+ ---
120
+
121
+ ## 🛠️ Equipment & Setup
122
+
123
+ ### Robotic Platform(s)
124
+
125
+ *List the primary robot(s) used.*
126
+
127
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
128
+
129
+ ### Sensors & Cameras
130
+
131
+ *List the sensors and cameras used. Specify model names where possible.
132
+
133
+ | Type | Model/Details |
134
+ | :--- | :--- |
135
+ | **Primary Camera** | `Endoscopic Camera, 1920x1080 @ 30fps with both left and right video feed` |
136
+ | **Joint/Position Encoders** | |
137
+
138
+ ---
139
+
140
+ ## 🎯 Action & State Space Representation
141
+
142
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
143
+
144
+ ### Action Space Representation
145
+
146
+ **Primary Action Representation:**
147
+ - [x] **Absolute Cartesian** (position/orientation relative to camera frame (ECM))
148
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
149
+ - [ ] **Joint Space** (direct joint angle commands)
150
+ - [ ] **Other** (Please specify: `[Your Representation]`)
151
+
152
+ **Orientation Representation:**
153
+ - [ ] **Quaternions** (x, y, z, w)
154
+ - [x] **Euler Angles** (roll, pitch, yaw)
155
+ - [ ] **Axis-Angle** (rotation vector)
156
+ - [ ] **Rotation Matrix** (3x3 matrix)
157
+ - [ ] **Other** (Please specify: `[Your Representation]`)
158
+
159
+ **Reference Frame:**
160
+ - [ ] **Robot Base Frame**
161
+ - [ ] **Tool/End-Effector Frame**
162
+ - [ ] **World/Global Frame**
163
+ - [x] **Camera Frame**
164
+ - [ ] **Other** (Please specify: `[Your Frame]`)
165
+
166
+ **Action Dimensions:**
167
+ *List the action space dimensions and their meanings.*
168
+ ```
169
+ action: [PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
170
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
171
+ - PSM{i}_jaw: Jaw angle in radians
172
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: Absolute position in camera frame (ECM frame)
173
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: Absolute Orientation as Euler Angles
174
+ ```
175
+ <!--
176
+ **Example:**
177
+ ```
178
+ action: [x, y, z, qx, qy, qz, qw, gripper]
179
+ - x, y, z: Absolute position in robot base frame (meters)
180
+ - qx, qy, qz, qw: Absolute orientation as quaternion
181
+ - gripper: Gripper opening angle (radians)
182
+ ```
183
+ -->
184
+ ### State Space Representation
185
+
186
+ **State Information Included:**
187
+ - [x] **Joint Positions** (all articulated joints)
188
+ - [ ] **Joint Velocities**
189
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
190
+ - [ ] **Force/Torque Readings**
191
+ - [x] **Gripper State** (position, force, etc.)
192
+ - [ ] **Other** (Please specify: `[Your State Info]`)
193
+
194
+ **State Dimensions:**
195
+ *List the state space dimensions and their meanings.*
196
+
197
+ **Example:**
198
+ ```
199
+ observation.state: [PSM{i}_joint_1, PSM{i}_joint_2, PSM{i}_joint_3, PSM{i}_joint_4, PSM{i}_joint_5, PSM{i}_joint_6, PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
200
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
201
+ - PSM{i}_joint_1 to PSM{i}_joint_6: Absolute joint positions for the 7-DOF arm (radians)
202
+ - PSM{i}_jaw: Jaw angle of the gripper (radians)
203
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: End-effector absolute position in camera (ECM) frame (meters)
204
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: End-effector absolute orientation as Euler angles (radians)
205
+
206
+ ```
207
+
208
+ ---
209
+
210
+ ## ⏱️ Data Synchronization Approach
211
+
212
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
213
+
214
+ We use the ApproximateTimeSynchronizer [[Link]](https://wiki.ros.org/message_filters/ApproximateTime) from the ROS message_filters package to synchronize all data streams. The queue_size parameter controls the number of incoming messages buffered for each topic, while the slop parameter specifies the maximum allowable time difference between messages for them to be considered synchronized. This approach aligns messages based on their timestamps within a defined tolerance rather than requiring exact matches.
215
+
216
+ Data is recorded at 30 Hz, with the camera feed acting as the bottleneck. During data collection, we monitor the inter-frame time difference and ensure it remains close to 33 ms, resulting in approximately 450 frames per 15-second episode. In rare cases, message delays lead to significantly fewer frames (fewer than 435); such episodes are discarded and re-recorded.
217
+
218
+ <!--
219
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
220
+ -->
221
+ ---
222
+
223
+ ## 👥 Attribution & Contact
224
+
225
+ *Please provide attribution for the dataset creators and a point of contact.*
226
+
227
+ | | |
228
+ | :--- | :--- |
229
+ | **Dataset Creators** | `Alaa Eldin Abdelaal`, `Chetan Reddy Narayanaswamy`, `Jiaqi Shao`, `Howard Ji`, `Allison Okamura` |
230
+ | **Institution** | `Stanford University` |
231
+ | **Contact Email** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com`, `chetanrn@stanford.edu`, `jiaqis7@stanford.edu`, `howardji@stanford.edu`, `aokamura@stanford.edu` |
232
+ | **Point of Contact** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com` |
Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/peg_transfer/README.md ADDED
@@ -0,0 +1,232 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Peg Transfer - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of the da Vinci Si robot performing peg transfer on a transfer board*
14
+
15
+ <!--
16
+ **Example:** *Teleoperated demonstrations of a da Vinci robot performing needle passing on a silicone phantom.*
17
+ -->
18
+
19
+ ---
20
+
21
+ ## 📖 Dataset Description
22
+
23
+ <!--
24
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
25
+
26
+ **Example:** *This dataset contains 2,500 trajectories of expert surgeons using the dVRK to perform surgical suturing tasks. It includes successful trials, failures, and recovery attempts to provide a robust dataset for training imitation learning policies.*
27
+ -->
28
+ The dataset comprises around 600 dVRK trajectories of the peg transfer task including successful trials, failures, and recovery attempts. It provides synchronized cartesian, joint and video data for training and evaluating robot learning policies.
29
+
30
+
31
+ | | |
32
+ | :--- | :--- |
33
+ | **Total Trajectories** | `598` |
34
+ | **Total Hours** | `2.5` |
35
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[x] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
36
+ | **License** | CC BY 4.0 |
37
+ | **Version** | `[e.g., 1.0]` |
38
+
39
+ ---
40
+
41
+ ## 🎯 Tasks & Domain
42
+
43
+ ### Domain
44
+
45
+ *Select the primary domain for this dataset.*
46
+
47
+ - [x] **Surgical Robotics**
48
+ - [ ] **Ultrasound Robotics**
49
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
50
+
51
+ ### Demonstrated Skills
52
+
53
+ *List the primary skills or procedures demonstrated in this dataset.*
54
+ - Peg Pickup
55
+ - Peg Passing
56
+ - Peg Placing
57
+
58
+ <!--
59
+ ***Example:***
60
+ - Needle-passing
61
+ - Suture-tying
62
+ - ...
63
+ -->
64
+ ---
65
+
66
+ ## 🔬 Collection Procedure
67
+
68
+ ### Collection Method
69
+
70
+ *How was the data collected?*
71
+
72
+ - [x] **Human Teleoperation**
73
+ - [ ] **Programmatic/State-Machine**
74
+ - [ ] **AI Policy / Autonomous**
75
+ - [ ] **Other** (Please specify: `[Your Method]`)
76
+
77
+ ### Operator Details
78
+
79
+ | | Description |
80
+ | :--- | :--- |
81
+ | **Operator Count** | `2` |
82
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[x] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
83
+ | **Collection Period** | From `[2025-10-01]` to `[2025-01-15]` |
84
+
85
+ ### Recovery Demonstrations
86
+
87
+ *Does this dataset include examples of recovering from failure?*
88
+
89
+ - [x] **Yes**
90
+ - [ ] **No**
91
+
92
+ **If yes, please briefly describe the recovery process:**
93
+ The dataset includes 50 recovery demonstrations and 50 failure demonstrations. In the failure cases, the robotic arm fails to achieve a grasp or drops while passing. In the recovery cases, the arm fails to pick the peg correctly but picks it up when attempted again. Another type of recovery occurs when the peg is being placed, fails and its orientation is adjusted to keep it upright.
94
+
95
+ <!--
96
+ *Example: For 250 demonstrations, demonstrations are initialized from a failed needle grasp position, the operator re-orients the robotic grippers and attempts to grasp the needle again from a different angle.*
97
+ -->
98
+ ---
99
+
100
+ ## 💡 Diversity Dimensions
101
+
102
+ *Check all dimensions that were intentionally varied during data collection.*
103
+
104
+ - [x] **Camera Position / Angle**
105
+ - [x] **Lighting Conditions**
106
+ - [x] **Target Object** (e.g., different phantom models, suture types)
107
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
108
+ - [ ] **Robot Embodiment** (if multiple robots were used)
109
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
110
+ - [ ] **Background / Scene**
111
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
112
+
113
+ *If you checked any of the above please briefly elaborate below.*
114
+ The camera configuration was adjusted every 50–100 demonstrations by varying the setup height by ±2 cm. In addition, the needle type and phantom base were changed periodically. Lighting conditions were varied between 60% and 100%. Each demonstration also features a slightly different needle pickup location.
115
+ <!--
116
+
117
+ **Example:** We adjusted the room camera perspective every 100 demonstrations. The camera angle was varied by panning up and down by +/- 10 degrees, as well as manually adjusting the height of the camera mount by +/- 2 cm. Additionally, we varied the needle used by swapping out various curvatures, including 1/4, 3/8, 1/2, and 5/8.
118
+ -->
119
+ ---
120
+
121
+ ## 🛠️ Equipment & Setup
122
+
123
+ ### Robotic Platform(s)
124
+
125
+ *List the primary robot(s) used.*
126
+
127
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
128
+
129
+ ### Sensors & Cameras
130
+
131
+ *List the sensors and cameras used. Specify model names where possible.
132
+
133
+ | Type | Model/Details |
134
+ | :--- | :--- |
135
+ | **Primary Camera** | `Endoscopic Camera, 1920x1080 @ 30fps with both left and right video feed` |
136
+ | **Joint/Position Encoders** | |
137
+
138
+ ---
139
+
140
+ ## 🎯 Action & State Space Representation
141
+
142
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
143
+
144
+ ### Action Space Representation
145
+
146
+ **Primary Action Representation:**
147
+ - [x] **Absolute Cartesian** (position/orientation relative to camera frame (ECM))
148
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
149
+ - [ ] **Joint Space** (direct joint angle commands)
150
+ - [ ] **Other** (Please specify: `[Your Representation]`)
151
+
152
+ **Orientation Representation:**
153
+ - [ ] **Quaternions** (x, y, z, w)
154
+ - [x] **Euler Angles** (roll, pitch, yaw)
155
+ - [ ] **Axis-Angle** (rotation vector)
156
+ - [ ] **Rotation Matrix** (3x3 matrix)
157
+ - [ ] **Other** (Please specify: `[Your Representation]`)
158
+
159
+ **Reference Frame:**
160
+ - [ ] **Robot Base Frame**
161
+ - [ ] **Tool/End-Effector Frame**
162
+ - [ ] **World/Global Frame**
163
+ - [x] **Camera Frame**
164
+ - [ ] **Other** (Please specify: `[Your Frame]`)
165
+
166
+ **Action Dimensions:**
167
+ *List the action space dimensions and their meanings.*
168
+ ```
169
+ action: [PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
170
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
171
+ - PSM{i}_jaw: Jaw angle in radians
172
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: Absolute position in camera frame (ECM frame)
173
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: Absolute Orientation as Euler Angles
174
+ ```
175
+ <!--
176
+ **Example:**
177
+ ```
178
+ action: [x, y, z, qx, qy, qz, qw, gripper]
179
+ - x, y, z: Absolute position in robot base frame (meters)
180
+ - qx, qy, qz, qw: Absolute orientation as quaternion
181
+ - gripper: Gripper opening angle (radians)
182
+ ```
183
+ -->
184
+ ### State Space Representation
185
+
186
+ **State Information Included:**
187
+ - [x] **Joint Positions** (all articulated joints)
188
+ - [ ] **Joint Velocities**
189
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
190
+ - [ ] **Force/Torque Readings**
191
+ - [x] **Gripper State** (position, force, etc.)
192
+ - [ ] **Other** (Please specify: `[Your State Info]`)
193
+
194
+ **State Dimensions:**
195
+ *List the state space dimensions and their meanings.*
196
+
197
+ **Example:**
198
+ ```
199
+ observation.state: [PSM{i}_joint_1, PSM{i}_joint_2, PSM{i}_joint_3, PSM{i}_joint_4, PSM{i}_joint_5, PSM{i}_joint_6, PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
200
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
201
+ - PSM{i}_joint_1 to PSM{i}_joint_6: Absolute joint positions for the 7-DOF arm (radians)
202
+ - PSM{i}_jaw: Jaw angle of the gripper (radians)
203
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: End-effector absolute position in camera (ECM) frame (meters)
204
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: End-effector absolute orientation as Euler angles (radians)
205
+
206
+ ```
207
+
208
+ ---
209
+
210
+ ## ⏱️ Data Synchronization Approach
211
+
212
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
213
+
214
+ We use the ApproximateTimeSynchronizer [[Link]](https://wiki.ros.org/message_filters/ApproximateTime) from the ROS message_filters package to synchronize all data streams. The queue_size parameter controls the number of incoming messages buffered for each topic, while the slop parameter specifies the maximum allowable time difference between messages for them to be considered synchronized. This approach aligns messages based on their timestamps within a defined tolerance rather than requiring exact matches.
215
+
216
+ Data is recorded at 30 Hz, with the camera feed acting as the bottleneck. During data collection, we monitor the inter-frame time difference and ensure it remains close to 33 ms, resulting in approximately 450 frames per 15-second episode. In rare cases, message delays lead to significantly fewer frames (fewer than 435); such episodes are discarded and re-recorded.
217
+
218
+ <!--
219
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
220
+ -->
221
+ ---
222
+
223
+ ## 👥 Attribution & Contact
224
+
225
+ *Please provide attribution for the dataset creators and a point of contact.*
226
+
227
+ | | |
228
+ | :--- | :--- |
229
+ | **Dataset Creators** | `Alaa Eldin Abdelaal`, `Chetan Reddy Narayanaswamy`, `Jiaqi Shao`, `Howard Ji`, `Allison Okamura` |
230
+ | **Institution** | `Stanford University` |
231
+ | **Contact Email** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com`, `chetanrn@stanford.edu`, `jiaqis7@stanford.edu`, `howardji@stanford.edu`, `aokamura@stanford.edu` |
232
+ | **Point of Contact** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com` |
Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/real_robot_dvrk/tissue_retraction/README.md ADDED
@@ -0,0 +1,230 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Tissue Retraction - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of the da Vinci Si robot performing tissue retraction of 2-3 layers (of silicone phantom)*
14
+
15
+ <!--
16
+ **Example:** *Teleoperated demonstrations of a da Vinci robot performing needle passing on a silicone phantom.*
17
+ -->
18
+
19
+ ---
20
+
21
+ ## 📖 Dataset Description
22
+
23
+ <!--
24
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
25
+
26
+ **Example:** *This dataset contains 2,500 trajectories of expert surgeons using the dVRK to perform surgical suturing tasks. It includes successful trials, failures, and recovery attempts to provide a robust dataset for training imitation learning policies.*
27
+ -->
28
+ The dataset comprises 700 dVRK trajectories of tissue retraction performed on a table top phantom, including successful trials, failures, and recovery attempts. It provides synchronized cartesian, joint and video data for training and evaluating robot learning policies.
29
+
30
+
31
+ | | |
32
+ | :--- | :--- |
33
+ | **Total Trajectories** | `698` |
34
+ | **Total Hours** | `2.9` |
35
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[x] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
36
+ | **License** | CC BY 4.0 |
37
+ | **Version** | `[e.g., 1.0]` |
38
+
39
+ ---
40
+
41
+ ## 🎯 Tasks & Domain
42
+
43
+ ### Domain
44
+
45
+ *Select the primary domain for this dataset.*
46
+
47
+ - [x] **Surgical Robotics**
48
+ - [ ] **Ultrasound Robotics**
49
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
50
+
51
+ ### Demonstrated Skills
52
+
53
+ *List the primary skills or procedures demonstrated in this dataset.*
54
+ - Choosing Right Point to Start Retracting
55
+ - Second Arm Assisting
56
+ - Retracting Multiple Layers
57
+
58
+ <!--
59
+ ***Example:***
60
+ - Needle-passing
61
+ - Suture-tying
62
+ - ...
63
+ -->
64
+ ---
65
+
66
+ ## 🔬 Collection Procedure
67
+
68
+ ### Collection Method
69
+
70
+ *How was the data collected?*
71
+
72
+ - [x] **Human Teleoperation**
73
+ - [ ] **Programmatic/State-Machine**
74
+ - [ ] **AI Policy / Autonomous**
75
+ - [ ] **Other** (Please specify: `[Your Method]`)
76
+
77
+ ### Operator Details
78
+
79
+ | | Description |
80
+ | :--- | :--- |
81
+ | **Operator Count** | `1` |
82
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[x] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
83
+ | **Collection Period** | From `[2025-10-01]` to `[2025-01-15]` |
84
+
85
+ ### Recovery Demonstrations
86
+
87
+ *Does this dataset include examples of recovering from failure?*
88
+
89
+ - [ ] **Yes**
90
+ - [x] **No**
91
+
92
+ <!--
93
+ *Example: For 250 demonstrations, demonstrations are initialized from a failed needle grasp position, the operator re-orients the robotic grippers and attempts to grasp the needle again from a different angle.*
94
+ -->
95
+ ---
96
+
97
+ ## 💡 Diversity Dimensions
98
+
99
+ *Check all dimensions that were intentionally varied during data collection.*
100
+
101
+ - [x] **Camera Position / Angle**
102
+ - [x] **Lighting Conditions**
103
+ - [x] **Target Object** (e.g., different phantom models, suture types)
104
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
105
+ - [ ] **Robot Embodiment** (if multiple robots were used)
106
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
107
+ - [ ] **Background / Scene**
108
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
109
+
110
+ *If you checked any of the above please briefly elaborate below.*
111
+ The camera configuration was adjusted every 50–100 demonstrations by varying the setup height by ±2 cm. In addition, the needle type and phantom base were changed periodically. Lighting conditions were varied between 60% and 100%. Some demonstrations had 2 layers and some had 3 layers.
112
+ <!--
113
+
114
+ **Example:** We adjusted the room camera perspective every 100 demonstrations. The camera angle was varied by panning up and down by +/- 10 degrees, as well as manually adjusting the height of the camera mount by +/- 2 cm. Additionally, we varied the needle used by swapping out various curvatures, including 1/4, 3/8, 1/2, and 5/8.
115
+ -->
116
+ ---
117
+
118
+ ## 🛠️ Equipment & Setup
119
+
120
+ ### Robotic Platform(s)
121
+
122
+ *List the primary robot(s) used.*
123
+
124
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
125
+
126
+ ### Sensors & Cameras
127
+
128
+ *List the sensors and cameras used. Specify model names where possible.
129
+
130
+ | Type | Model/Details |
131
+ | :--- | :--- |
132
+ | **Primary Camera** | `Endoscopic Camera, 1920x1080 @ 30fps with both left and right video feed` |
133
+ | **Joint/Position Encoders** | |
134
+
135
+ ---
136
+
137
+ ## 🎯 Action & State Space Representation
138
+
139
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
140
+
141
+ ### Action Space Representation
142
+
143
+ **Primary Action Representation:**
144
+ - [x] **Absolute Cartesian** (position/orientation relative to camera frame (ECM))
145
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
146
+ - [ ] **Joint Space** (direct joint angle commands)
147
+ - [ ] **Other** (Please specify: `[Your Representation]`)
148
+
149
+ **Orientation Representation:**
150
+ - [ ] **Quaternions** (x, y, z, w)
151
+ - [x] **Euler Angles** (roll, pitch, yaw)
152
+ - [ ] **Axis-Angle** (rotation vector)
153
+ - [ ] **Rotation Matrix** (3x3 matrix)
154
+ - [ ] **Other** (Please specify: `[Your Representation]`)
155
+
156
+ **Reference Frame:**
157
+ - [ ] **Robot Base Frame**
158
+ - [ ] **Tool/End-Effector Frame**
159
+ - [ ] **World/Global Frame**
160
+ - [x] **Camera Frame**
161
+ - [ ] **Other** (Please specify: `[Your Frame]`)
162
+
163
+ **Action Dimensions:**
164
+ *List the action space dimensions and their meanings.*
165
+ ```
166
+ action: [PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
167
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
168
+ - PSM{i}_jaw: Jaw angle in radians
169
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: Absolute position in camera frame (ECM frame)
170
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: Absolute Orientation as Euler Angles
171
+ ```
172
+ <!--
173
+ **Example:**
174
+ ```
175
+ action: [x, y, z, qx, qy, qz, qw, gripper]
176
+ - x, y, z: Absolute position in robot base frame (meters)
177
+ - qx, qy, qz, qw: Absolute orientation as quaternion
178
+ - gripper: Gripper opening angle (radians)
179
+ ```
180
+ -->
181
+ ### State Space Representation
182
+
183
+ **State Information Included:**
184
+ - [x] **Joint Positions** (all articulated joints)
185
+ - [ ] **Joint Velocities**
186
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
187
+ - [ ] **Force/Torque Readings**
188
+ - [x] **Gripper State** (position, force, etc.)
189
+ - [ ] **Other** (Please specify: `[Your State Info]`)
190
+
191
+ **State Dimensions:**
192
+ *List the state space dimensions and their meanings.*
193
+
194
+ **Example:**
195
+ ```
196
+ observation.state: [PSM{i}_joint_1, PSM{i}_joint_2, PSM{i}_joint_3, PSM{i}_joint_4, PSM{i}_joint_5, PSM{i}_joint_6, PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
197
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
198
+ - PSM{i}_joint_1 to PSM{i}_joint_6: Absolute joint positions for the 7-DOF arm (radians)
199
+ - PSM{i}_jaw: Jaw angle of the gripper (radians)
200
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: End-effector absolute position in camera (ECM) frame (meters)
201
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: End-effector absolute orientation as Euler angles (radians)
202
+
203
+ ```
204
+
205
+ ---
206
+
207
+ ## ⏱️ Data Synchronization Approach
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ We use the ApproximateTimeSynchronizer [[Link]](https://wiki.ros.org/message_filters/ApproximateTime) from the ROS message_filters package to synchronize all data streams. The queue_size parameter controls the number of incoming messages buffered for each topic, while the slop parameter specifies the maximum allowable time difference between messages for them to be considered synchronized. This approach aligns messages based on their timestamps within a defined tolerance rather than requiring exact matches.
212
+
213
+ Data is recorded at 30 Hz, with the camera feed acting as the bottleneck. During data collection, we monitor the inter-frame time difference and ensure it remains close to 33 ms, resulting in approximately 450 frames per 15-second episode. In rare cases, message delays lead to significantly fewer frames (fewer than 435); such episodes are discarded and re-recorded.
214
+
215
+ <!--
216
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
217
+ -->
218
+ ---
219
+
220
+ ## 👥 Attribution & Contact
221
+
222
+ *Please provide attribution for the dataset creators and a point of contact.*
223
+
224
+ | | |
225
+ | :--- | :--- |
226
+ | **Dataset Creators** | `Alaa Eldin Abdelaal`, `Chetan Reddy Narayanaswamy`, `Jiaqi Shao`, `Howard Ji`, `Allison Okamura` |
227
+ | **Institution** | `Stanford University` |
228
+ | **Contact Email** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com`, `chetanrn@stanford.edu`, `jiaqis7@stanford.edu`, `howardji@stanford.edu`, `aokamura@stanford.edu` |
229
+ | **Point of Contact** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com` |
230
+
Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/simulation/block_transfer_sim_lerobot_1_28/README.md ADDED
@@ -0,0 +1,228 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Block Transfer (Simulation) - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of the da Vinci robot in orbitsurgical library in Isaac Sim performing block transfer*
14
+
15
+ <!--
16
+ **Example:** *Teleoperated demonstrations of a da Vinci robot performing needle passing on a silicone phantom.*
17
+ -->
18
+
19
+ ---
20
+
21
+ ## 📖 Dataset Description
22
+
23
+ <!--
24
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
25
+
26
+ **Example:** *This dataset contains 2,500 trajectories of expert surgeons using the dVRK to perform surgical suturing tasks. It includes successful trials, failures, and recovery attempts to provide a robust dataset for training imitation learning policies.*
27
+ -->
28
+ The dataset comprises around 500 dVRK trajectories of the block transfer task including successful trials and some failure cases. It provides synchronized cartesian, joint and video data for training and evaluating robot learning policies. The asset used is from orbitsurgical library.
29
+
30
+
31
+ | | |
32
+ | :--- | :--- |
33
+ | **Total Trajectories** | `500` |
34
+ | **Total Hours** | `2.5` |
35
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[ ] Table-Top Phantom` `[X] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
36
+ | **License** | CC BY 4.0 |
37
+ | **Version** | `[e.g., 1.0]` |
38
+
39
+ ---
40
+
41
+ ## 🎯 Tasks & Domain
42
+
43
+ ### Domain
44
+
45
+ *Select the primary domain for this dataset.*
46
+
47
+ - [x] **Surgical Robotics**
48
+ - [ ] **Ultrasound Robotics**
49
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
50
+
51
+ ### Demonstrated Skills
52
+
53
+ *List the primary skills or procedures demonstrated in this dataset.*
54
+ - Needle Pickup
55
+ - Needle Passing
56
+
57
+ <!--
58
+ ***Example:***
59
+ - Needle-passing
60
+ - Suture-tying
61
+ - ...
62
+ -->
63
+ ---
64
+
65
+ ## 🔬 Collection Procedure
66
+
67
+ ### Collection Method
68
+
69
+ *How was the data collected?*
70
+
71
+ - [x] **Human Teleoperation**
72
+ - [ ] **Programmatic/State-Machine**
73
+ - [ ] **AI Policy / Autonomous**
74
+ - [ ] **Other** (Please specify: `[Your Method]`)
75
+
76
+ ### Operator Details
77
+
78
+ | | Description |
79
+ | :--- | :--- |
80
+ | **Operator Count** | `1` |
81
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[x] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
82
+ | **Collection Period** | From `[2025-10-01]` to `[2026-01-15]` |
83
+
84
+ ### Recovery Demonstrations
85
+
86
+ *Does this dataset include examples of recovering from failure?*
87
+
88
+ - [ ] **Yes**
89
+ - [X] **No**
90
+
91
+ **If yes, please briefly describe the recovery process:**
92
+
93
+ <!--
94
+ *Example: For 250 demonstrations, demonstrations are initialized from a failed needle grasp position, the operator re-orients the robotic grippers and attempts to grasp the needle again from a different angle.*
95
+ -->
96
+ ---
97
+
98
+ ## 💡 Diversity Dimensions
99
+
100
+ *Check all dimensions that were intentionally varied during data collection.*
101
+
102
+ - [ ] **Camera Position / Angle**
103
+ - [ ] **Lighting Conditions**
104
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
105
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
106
+ - [ ] **Robot Embodiment** (if multiple robots were used)
107
+ - [x] **Task Execution** (e.g., different techniques for the same task)
108
+ - [ ] **Background / Scene**
109
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
110
+
111
+ *If you checked any of the above please briefly elaborate below.*
112
+ Each demonstration has a slightly different needle pickup location and pass location, also with the different pick up and pass style.
113
+ <!--
114
+
115
+ **Example:** We adjusted the room camera perspective every 100 demonstrations. The camera angle was varied by panning up and down by +/- 10 degrees, as well as manually adjusting the height of the camera mount by +/- 2 cm. Additionally, we varied the needle used by swapping out various curvatures, including 1/4, 3/8, 1/2, and 5/8.
116
+ -->
117
+ ---
118
+
119
+ ## 🛠️ Equipment & Setup
120
+
121
+ ### Robotic Platform(s)
122
+
123
+ *List the primary robot(s) used.*
124
+
125
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
126
+
127
+ ### Sensors & Cameras
128
+
129
+ *List the sensors and cameras used. Specify model names where possible.
130
+
131
+ | Type | Model/Details |
132
+ | :--- | :--- |
133
+ | **Primary Camera** | `Camera in Isaac Sim, 640x480 @ 20fps with both left and right video feed` |
134
+ | **Joint/Position Encoders** | |
135
+
136
+ ---
137
+
138
+ ## 🎯 Action & State Space Representation
139
+
140
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
141
+
142
+ ### Action Space Representation
143
+
144
+ **Primary Action Representation:**
145
+ - [x] **Absolute Cartesian** (position/orientation relative to camera frame (ECM))
146
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
147
+ - [ ] **Joint Space** (direct joint angle commands)
148
+ - [ ] **Other** (Please specify: `[Your Representation]`)
149
+
150
+ **Orientation Representation:**
151
+ - [ ] **Quaternions** (x, y, z, w)
152
+ - [x] **Euler Angles** (roll, pitch, yaw)
153
+ - [ ] **Axis-Angle** (rotation vector)
154
+ - [ ] **Rotation Matrix** (3x3 matrix)
155
+ - [ ] **Other** (Please specify: `[Your Representation]`)
156
+
157
+ **Reference Frame:**
158
+ - [x] **Robot Base Frame**
159
+ - [ ] **Tool/End-Effector Frame**
160
+ - [ ] **World/Global Frame**
161
+ - [ ] **Camera Frame**
162
+ - [ ] **Other** (Please specify: `[Your Frame]`)
163
+
164
+ **Action Dimensions:**
165
+ *List the action space dimensions and their meanings.*
166
+ ```
167
+ action: [PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
168
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
169
+ - PSM{i}_jaw: Jaw angle in radians
170
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: Absolute position in camera frame (ECM frame)
171
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: Absolute Orientation as Euler Angles
172
+ ```
173
+ <!--
174
+ **Example:**
175
+ ```
176
+ action: [x, y, z, qx, qy, qz, qw, gripper]
177
+ - x, y, z: Absolute position in robot base frame (meters)
178
+ - qx, qy, qz, qw: Absolute orientation as quaternion
179
+ - gripper: Gripper opening angle (radians)
180
+ ```
181
+ -->
182
+ ### State Space Representation
183
+
184
+ **State Information Included:**
185
+ - [x] **Joint Positions** (all articulated joints)
186
+ - [ ] **Joint Velocities**
187
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
188
+ - [ ] **Force/Torque Readings**
189
+ - [x] **Gripper State** (position, force, etc.)
190
+ - [ ] **Other** (Please specify: `[Your State Info]`)
191
+
192
+ **State Dimensions:**
193
+ *List the state space dimensions and their meanings.*
194
+
195
+ ```
196
+ observation.state: [PSM{i}_joint_1, PSM{i}_joint_2, PSM{i}_joint_3, PSM{i}_joint_4, PSM{i}_joint_5, PSM{i}_joint_6, PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
197
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
198
+ - PSM{i}_joint_1 to PSM{i}_joint_6: Absolute joint positions for the 7-DOF arm (radians)
199
+ - PSM{i}_jaw: Jaw angle of the gripper (radians)
200
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: End-effector absolute position in robot frame (meters)
201
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: End-effector absolute orientation as Euler angles (radians)
202
+
203
+ ```
204
+
205
+ ---
206
+
207
+ ## ⏱️ Data Synchronization Approach
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ Our capture loop captures robot state, timestamp, and both camera frames in one tuple per frame and enqueues it. The ring buffer guarantees FIFO delivery so that logger thread dequeues the same tuple, writes the paired images, and records the synchronized data in exactly one row.
212
+ Data is recorded around 20 Hz, with the camera feed acting as the bottleneck. resulting in approximately 460 frames per 25-second episode.
213
+
214
+ <!--
215
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
216
+ -->
217
+ ---
218
+
219
+ ## 👥 Attribution & Contact
220
+
221
+ *Please provide attribution for the dataset creators and a point of contact.*
222
+
223
+ | | |
224
+ | :--- | :--- |
225
+ | **Dataset Creators** | `Alaa Eldin Abdelaal`, `Chetan Reddy Narayanaswamy`, `Jiaqi Shao`, `Howard Ji`, `Allison Okamura` |
226
+ | **Institution** | `Stanford University` |
227
+ | **Contact Email** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com`, `chetanrn@stanford.edu`, `jiaqis7@stanford.edu`, `howardji@stanford.edu`, `aokamura@stanford.edu` |
228
+ | **Point of Contact** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com` |
Surgical/stanford/collaborative_haptics_and_robotics_in_medicine_lab/simulation/needle_transfer_sim_lerobot_1_28/README.md ADDED
@@ -0,0 +1,228 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Needle Transfer (Simulation)- README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Teleoperated demonstrations of the da Vinci robot in orbitsurgical library in Isaac Sim performing needle transfer*
14
+
15
+ <!--
16
+ **Example:** *Teleoperated demonstrations of a da Vinci robot performing needle passing on a silicone phantom.*
17
+ -->
18
+
19
+ ---
20
+
21
+ ## 📖 Dataset Description
22
+
23
+ <!--
24
+ *Briefly describe the purpose and content of this dataset. What key skills or scenarios does it demonstrate?*
25
+
26
+ **Example:** *This dataset contains 2,500 trajectories of expert surgeons using the dVRK to perform surgical suturing tasks. It includes successful trials, failures, and recovery attempts to provide a robust dataset for training imitation learning policies.*
27
+ -->
28
+ The dataset comprises around 500 dVRK trajectories of the needle transfer task including successful trials and some failure cases. It provides synchronized cartesian, joint and video data for training and evaluating robot learning policies. The asset used is from orbitsurgical library.
29
+
30
+
31
+ | | |
32
+ | :--- | :--- |
33
+ | **Total Trajectories** | `500` |
34
+ | **Total Hours** | `2.5` |
35
+ | **Data Type** | `[ ] Clinical` `[ ] Ex-Vivo` `[ ] Table-Top Phantom` `[X] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
36
+ | **License** | CC BY 4.0 |
37
+ | **Version** | `[e.g., 1.0]` |
38
+
39
+ ---
40
+
41
+ ## 🎯 Tasks & Domain
42
+
43
+ ### Domain
44
+
45
+ *Select the primary domain for this dataset.*
46
+
47
+ - [x] **Surgical Robotics**
48
+ - [ ] **Ultrasound Robotics**
49
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
50
+
51
+ ### Demonstrated Skills
52
+
53
+ *List the primary skills or procedures demonstrated in this dataset.*
54
+ - Needle Pickup
55
+ - Needle Passing
56
+
57
+ <!--
58
+ ***Example:***
59
+ - Needle-passing
60
+ - Suture-tying
61
+ - ...
62
+ -->
63
+ ---
64
+
65
+ ## 🔬 Collection Procedure
66
+
67
+ ### Collection Method
68
+
69
+ *How was the data collected?*
70
+
71
+ - [x] **Human Teleoperation**
72
+ - [ ] **Programmatic/State-Machine**
73
+ - [ ] **AI Policy / Autonomous**
74
+ - [ ] **Other** (Please specify: `[Your Method]`)
75
+
76
+ ### Operator Details
77
+
78
+ | | Description |
79
+ | :--- | :--- |
80
+ | **Operator Count** | `1` |
81
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[x] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
82
+ | **Collection Period** | From `[2025-10-01]` to `[2026-01-15]` |
83
+
84
+ ### Recovery Demonstrations
85
+
86
+ *Does this dataset include examples of recovering from failure?*
87
+
88
+ - [ ] **Yes**
89
+ - [X] **No**
90
+
91
+ **If yes, please briefly describe the recovery process:**
92
+
93
+ <!--
94
+ *Example: For 250 demonstrations, demonstrations are initialized from a failed needle grasp position, the operator re-orients the robotic grippers and attempts to grasp the needle again from a different angle.*
95
+ -->
96
+ ---
97
+
98
+ ## 💡 Diversity Dimensions
99
+
100
+ *Check all dimensions that were intentionally varied during data collection.*
101
+
102
+ - [ ] **Camera Position / Angle**
103
+ - [ ] **Lighting Conditions**
104
+ - [ ] **Target Object** (e.g., different phantom models, suture types)
105
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
106
+ - [ ] **Robot Embodiment** (if multiple robots were used)
107
+ - [x] **Task Execution** (e.g., different techniques for the same task)
108
+ - [ ] **Background / Scene**
109
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
110
+
111
+ *If you checked any of the above please briefly elaborate below.*
112
+ Each demonstration has a slightly different needle pickup location and pass location, also with the different pick up and pass style.
113
+ <!--
114
+
115
+ **Example:** We adjusted the room camera perspective every 100 demonstrations. The camera angle was varied by panning up and down by +/- 10 degrees, as well as manually adjusting the height of the camera mount by +/- 2 cm. Additionally, we varied the needle used by swapping out various curvatures, including 1/4, 3/8, 1/2, and 5/8.
116
+ -->
117
+ ---
118
+
119
+ ## 🛠️ Equipment & Setup
120
+
121
+ ### Robotic Platform(s)
122
+
123
+ *List the primary robot(s) used.*
124
+
125
+ - **Robot 1:** `dVRK (da Vinci Research Kit)`
126
+
127
+ ### Sensors & Cameras
128
+
129
+ *List the sensors and cameras used. Specify model names where possible.
130
+
131
+ | Type | Model/Details |
132
+ | :--- | :--- |
133
+ | **Primary Camera** | `Camera in Isaac Sim, 640x480 @ 20fps with both left and right video feed` |
134
+ | **Joint/Position Encoders** | |
135
+
136
+ ---
137
+
138
+ ## 🎯 Action & State Space Representation
139
+
140
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
141
+
142
+ ### Action Space Representation
143
+
144
+ **Primary Action Representation:**
145
+ - [x] **Absolute Cartesian** (position/orientation relative to camera frame (ECM))
146
+ - [ ] **Relative Cartesian** (delta position/orientation from current pose)
147
+ - [ ] **Joint Space** (direct joint angle commands)
148
+ - [ ] **Other** (Please specify: `[Your Representation]`)
149
+
150
+ **Orientation Representation:**
151
+ - [ ] **Quaternions** (x, y, z, w)
152
+ - [x] **Euler Angles** (roll, pitch, yaw)
153
+ - [ ] **Axis-Angle** (rotation vector)
154
+ - [ ] **Rotation Matrix** (3x3 matrix)
155
+ - [ ] **Other** (Please specify: `[Your Representation]`)
156
+
157
+ **Reference Frame:**
158
+ - [x] **Robot Base Frame**
159
+ - [ ] **Tool/End-Effector Frame**
160
+ - [ ] **World/Global Frame**
161
+ - [ ] **Camera Frame**
162
+ - [ ] **Other** (Please specify: `[Your Frame]`)
163
+
164
+ **Action Dimensions:**
165
+ *List the action space dimensions and their meanings.*
166
+ ```
167
+ action: [PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
168
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
169
+ - PSM{i}_jaw: Jaw angle in radians
170
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: Absolute position in camera frame (ECM frame)
171
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: Absolute Orientation as Euler Angles
172
+ ```
173
+ <!--
174
+ **Example:**
175
+ ```
176
+ action: [x, y, z, qx, qy, qz, qw, gripper]
177
+ - x, y, z: Absolute position in robot base frame (meters)
178
+ - qx, qy, qz, qw: Absolute orientation as quaternion
179
+ - gripper: Gripper opening angle (radians)
180
+ ```
181
+ -->
182
+ ### State Space Representation
183
+
184
+ **State Information Included:**
185
+ - [x] **Joint Positions** (all articulated joints)
186
+ - [ ] **Joint Velocities**
187
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
188
+ - [ ] **Force/Torque Readings**
189
+ - [x] **Gripper State** (position, force, etc.)
190
+ - [ ] **Other** (Please specify: `[Your State Info]`)
191
+
192
+ **State Dimensions:**
193
+ *List the state space dimensions and their meanings.*
194
+
195
+ ```
196
+ observation.state: [PSM{i}_joint_1, PSM{i}_joint_2, PSM{i}_joint_3, PSM{i}_joint_4, PSM{i}_joint_5, PSM{i}_joint_6, PSM{i}_jaw, PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z, PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw]
197
+ - PSM{i} represents the arm (Could be PSM1 or PSM2)
198
+ - PSM{i}_joint_1 to PSM{i}_joint_6: Absolute joint positions for the 7-DOF arm (radians)
199
+ - PSM{i}_jaw: Jaw angle of the gripper (radians)
200
+ - PSM{i}_ee_x, PSM{i}_ee_y, PSM{i}_ee_z: End-effector absolute position in robot frame (meters)
201
+ - PSM{i}_ee_roll, PSM{i}_ee_pitch, PSM{i}_ee_yaw: End-effector absolute orientation as Euler angles (radians)
202
+
203
+ ```
204
+
205
+ ---
206
+
207
+ ## ⏱️ Data Synchronization Approach
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ Our capture loop captures robot state, timestamp, and both camera frames in one tuple per frame and enqueues it. The ring buffer guarantees FIFO delivery so that logger thread dequeues the same tuple, writes the paired images, and records the synchronized data in exactly one row.
212
+ Data is recorded around 20 Hz, with the camera feed acting as the bottleneck. resulting in approximately 460 frames per 25-second episode.
213
+
214
+ <!--
215
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
216
+ -->
217
+ ---
218
+
219
+ ## 👥 Attribution & Contact
220
+
221
+ *Please provide attribution for the dataset creators and a point of contact.*
222
+
223
+ | | |
224
+ | :--- | :--- |
225
+ | **Dataset Creators** | `Alaa Eldin Abdelaal`, `Chetan Reddy Narayanaswamy`, `Jiaqi Shao`, `Howard Ji`, `Allison Okamura` |
226
+ | **Institution** | `Stanford University` |
227
+ | **Contact Email** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com`, `chetanrn@stanford.edu`, `jiaqis7@stanford.edu`, `howardji@stanford.edu`, `aokamura@stanford.edu` |
228
+ | **Point of Contact** | `abdelaal@stanford.edu OR alaaaldinmagdy@gmail.com` |
Surgical/turin/mitic_lerobot_ex_vivo/README.md ADDED
@@ -0,0 +1,160 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # DVRK Suturing Subtasks Dataset - README
2
+
3
+ ---
4
+
5
+ ## At a Glance
6
+
7
+ Teleoperated demonstrations of a dVRK robot performing suturing subtasksk, like tissue lifting, needle insertion, needle extraction, knot tying on ex vivo porcine colon and stomach.
8
+
9
+ ---
10
+
11
+ ## Dataset Overview
12
+
13
+ | | |
14
+ | :--- | :--- |
15
+ | **Total Trajectories** | 800 |
16
+ | **Total Hours** | [TO be filled] |
17
+ | **Data Type** | Ex-Vivo |
18
+ | **License** | CC BY 4.0 |
19
+ | **Version** | 1.0 |
20
+
21
+ ---
22
+
23
+ ## Tasks & Domain
24
+
25
+ ### Domain
26
+
27
+ - [x] **Surgical Robotics**
28
+ - [ ] **Ultrasound Robotics**
29
+ - [ ] **Other Healthcare Robotics**
30
+
31
+ ### Demonstrated Skills
32
+
33
+ - Bimanual manipulation
34
+ - Pick and place
35
+ - Needle handling
36
+ - Knot tying
37
+ - Soft and ex-vivo tissue manipulation
38
+
39
+ ---
40
+
41
+ ## Data Collection Details
42
+
43
+ ### Collection Method
44
+
45
+ - [x] **Human Teleoperation**
46
+ - [ ] **Programmatic/State-Machine**
47
+ - [ ] **AI Policy / Autonomous**
48
+ - [ ] **Other**
49
+
50
+ ### Operator Details
51
+
52
+ | | Description |
53
+ | :--- | :--- |
54
+ | **Operator Count** | 5 operators |
55
+ | **Operator Skill Level** | Expert (Surgeons) and Novice (ML researchers with minimal surgical experience) |
56
+ | **Collection Period** | [To be filled] |
57
+
58
+ ### Recovery Demonstrations
59
+
60
+ - [x] **Yes**
61
+ - [] **No**
62
+
63
+ For each task, recovery demonstrations and errors are recorded.
64
+
65
+ ---
66
+
67
+ ## Diversity Dimensions
68
+
69
+ - [x] **Target Object** (different wounds for suturing and different anatomical specimens)
70
+ - [] **Spatial Layout**
71
+ - [x] **Camera Position / Angle** (different position and orientations)
72
+ - [x] **Lighting Conditions**
73
+ - [ ] **Robot Embodiment**
74
+ - [x] **Task Execution** (different operators performed the tasks differently)
75
+ - [x] **Background / Scene** (different background conditions)
76
+
77
+ We have recorded tasks both on porcine colon and stomach. Camera position and lighting condition were changed after every 20 episodes circa. We recruited 3 expert surgeons and 2 ML researchers that performed the tasks according to their expertise and own techniques. The background conditions change between colon and stomach episodes.
78
+
79
+ ---
80
+
81
+ ## Equipment & Setup
82
+
83
+ ### Robotic Platform(s)
84
+
85
+ - **Robot 1:** dVRK (da Vinci Research Kit)
86
+
87
+ ### Sensors & Cameras
88
+
89
+ | Type | Model/Details |
90
+ | :--- | :--- |
91
+ | **Primary Camera** | Stereo Endoscope (left), 1920x1080 @ 30 fps |
92
+ | **Secondary Camera** | Stereo Endoscope (right), 1920x1080 @ 30 fps |
93
+
94
+ ---
95
+
96
+ ## Action & State Space Representation
97
+
98
+ ### Action Space Representation
99
+
100
+ **Primary Action Representation:**
101
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
102
+
103
+ **Orientation Representation:**
104
+ - [x] **Quaternions** (x, y, z, w)
105
+
106
+ **Action Dimensions:**
107
+ ```
108
+ action: [psm1_x, psm1_y, psm1_z, psm1_qx, psm1_qy, psm1_qz, psm1_qw,
109
+ psm2_x, psm2_y, psm2_z, psm2_qx, psm2_qy, psm2_qz, psm2_qw]
110
+ - psm1_x, psm1_y, psm1_z: PSM1 absolute cartesian positions
111
+ - psm1_qx, psm1_qy, psm1_qz, psm1_qw: PSM1 absolute cartesian orientations
112
+ - psm2_x, psm2_y, psm2_z: PSM2 absolute cartesian positions
113
+ - psm2_qx, psm2_qy, psm2_qz, psm2_qw: PSM2 absolute cartesian orientations
114
+ ```
115
+
116
+ ### State Space Representation
117
+
118
+ **State Information Included:**
119
+ - [x] **Joint Positions** (all articulated joints)
120
+
121
+ **State Dimensions:**
122
+ ```
123
+ observation.state: [psm1_j1, psm1_j2, psm1_j3, psm1_j4, psm1_j5, psm1_j6,
124
+ psm2_j1, psm2_j2, psm2_j3, psm2_j4, psm2_j5, psm2_j6]
125
+ - psm1_j1-j6: PSM1 6-DOF joint positions (radians)
126
+ - psm2_j1-j6: PSM2 6-DOF joint positions (radians)
127
+ ```
128
+
129
+ ---
130
+
131
+ ## Data Synchronization Approach
132
+
133
+ All data are acquired using rosbag and all ROS messages are stamped with their header.stamp fields.
134
+ Data is synchronized offline post collection. The right camera serves as the reference timestamp source. For each frame acquired, only the (time) closest data is saved from robot kinematics, with a tolerance of 0.1 secs.
135
+
136
+ **Synchronization Method:**
137
+ - Reference stream: `/decklink/right/image_raw/compressed` (right stereo camera)
138
+ - Tolerance: 0.1 seconds
139
+ - Framework: ROS (Robot Operating System)
140
+
141
+ Messages from the following topics are synchronized:
142
+ - `/decklink/left/image_raw/compressed` - Left camera images
143
+ - `/decklink/right/image_raw/compressed` - Right camera images
144
+ - `/PSM1/measured_js` - PSM1 joint states
145
+ - `/PSM1/measured_cp` - PSM1 absolute cartesian position
146
+ - `/PSM2/measured_js` - PSM2 joint states
147
+ - `/PSM2/measured_cp` - PSM2 absolute cartesian position
148
+
149
+ ---
150
+
151
+ ## Attribution & Contact
152
+
153
+ | | |
154
+ | :--- | :--- |
155
+ | **Dataset Lead** | Matteo Pescio, Francesco Marzola, Luigi Muratore, Federica Barontini, Giovanni Distefano, Federico Lavagno, Giulio Dagnino, Alberto Arezzo |
156
+ | **Institution** | MITIC Lab - Università degli Studi di Torino |
157
+ | **Contact Email** | matteo.pescio@unito.it, francesco.marzola@unito.it, luigi.muratore@studenti.polito.it, federica.barontini@unito.it, giovanni.distefano@unito.it, federico.lavagno@unito.it, giulio.dagnino@unito.it, alberto.arezzo@unito.it |
158
+ | **Citation (BibTeX)** | <pre>@misc{dvrk_suturing_subtasks_2025,<br> author = {Pescio, Matteo and Marzola, Francesco and Muratore, Luigi and Barontini, Federica and Distefano, Giovanni and Lavagno, Federico and Dagnino, Giulio and Arezzo, Alberto},<br> title = {DVRK Suturing Subtasks Dataset},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br>}</pre> |
159
+
160
+ ---
Surgical/turin/mitic_lerobot_plastic_pad/README.md ADDED
@@ -0,0 +1,160 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # DVRK Suturing Subtasks Dataset - README
2
+
3
+ ---
4
+
5
+ ## At a Glance
6
+
7
+ Teleoperated demonstrations of a dVRK robot performing suturing subtasksk, like tissue lifting, needle insertion, needle extraction, knot tying on plastic phantom.
8
+
9
+ ---
10
+
11
+ ## Dataset Overview
12
+
13
+ | | |
14
+ | :--- | :--- |
15
+ | **Total Trajectories** | 550 |
16
+ | **Total Hours** | [TO be filled] |
17
+ | **Data Type** | Ex-Vivo |
18
+ | **License** | CC BY 4.0 |
19
+ | **Version** | 1.0 |
20
+
21
+ ---
22
+
23
+ ## Tasks & Domain
24
+
25
+ ### Domain
26
+
27
+ - [x] **Surgical Robotics**
28
+ - [ ] **Ultrasound Robotics**
29
+ - [ ] **Other Healthcare Robotics**
30
+
31
+ ### Demonstrated Skills
32
+
33
+ - Bimanual manipulation
34
+ - Pick and place
35
+ - Needle handling
36
+ - Knot tying
37
+ - Soft tissue manipulation
38
+
39
+ ---
40
+
41
+ ## Data Collection Details
42
+
43
+ ### Collection Method
44
+
45
+ - [x] **Human Teleoperation**
46
+ - [ ] **Programmatic/State-Machine**
47
+ - [ ] **AI Policy / Autonomous**
48
+ - [ ] **Other**
49
+
50
+ ### Operator Details
51
+
52
+ | | Description |
53
+ | :--- | :--- |
54
+ | **Operator Count** | 5 operators |
55
+ | **Operator Skill Level** | Expert (Surgeons) and Novice (ML researchers with minimal surgical experience) |
56
+ | **Collection Period** | [To be filled] |
57
+
58
+ ### Recovery Demonstrations
59
+
60
+ - [x] **Yes**
61
+ - [] **No**
62
+
63
+ For each task, recovery demonstrations and errors are recorded.
64
+
65
+ ---
66
+
67
+ ## Diversity Dimensions
68
+
69
+ - [x] **Target Object** (different wounds for suturing and different anatomical specimens)
70
+ - [] **Spatial Layout**
71
+ - [x] **Camera Position / Angle** (different position and orientations)
72
+ - [x] **Lighting Conditions**
73
+ - [ ] **Robot Embodiment**
74
+ - [x] **Task Execution** (different operators performed the tasks differently)
75
+ - [x] **Background / Scene** (different background conditions)
76
+
77
+ We have recorded tasks on a plastic phantom. Camera position and lighting condition were changed after every 20 episodes circa. We recruited 3 expert surgeons and 2 ML researchers that performed the tasks according to their expertise and own techniques. The background conditions change between colon and stomach episodes.
78
+
79
+ ---
80
+
81
+ ## Equipment & Setup
82
+
83
+ ### Robotic Platform(s)
84
+
85
+ - **Robot 1:** dVRK (da Vinci Research Kit)
86
+
87
+ ### Sensors & Cameras
88
+
89
+ | Type | Model/Details |
90
+ | :--- | :--- |
91
+ | **Primary Camera** | Stereo Endoscope (left), 1920x1080 @ 30 fps |
92
+ | **Secondary Camera** | Stereo Endoscope (right), 1920x1080 @ 30 fps |
93
+
94
+ ---
95
+
96
+ ## Action & State Space Representation
97
+
98
+ ### Action Space Representation
99
+
100
+ **Primary Action Representation:**
101
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
102
+
103
+ **Orientation Representation:**
104
+ - [x] **Quaternions** (x, y, z, w)
105
+
106
+ **Action Dimensions:**
107
+ ```
108
+ action: [psm1_x, psm1_y, psm1_z, psm1_qx, psm1_qy, psm1_qz, psm1_qw,
109
+ psm2_x, psm2_y, psm2_z, psm2_qx, psm2_qy, psm2_qz, psm2_qw]
110
+ - psm1_x, psm1_y, psm1_z: PSM1 absolute cartesian positions
111
+ - psm1_qx, psm1_qy, psm1_qz, psm1_qw: PSM1 absolute cartesian orientations
112
+ - psm2_x, psm2_y, psm2_z: PSM2 absolute cartesian positions
113
+ - psm2_qx, psm2_qy, psm2_qz, psm2_qw: PSM2 absolute cartesian orientations
114
+ ```
115
+
116
+ ### State Space Representation
117
+
118
+ **State Information Included:**
119
+ - [x] **Joint Positions** (all articulated joints)
120
+
121
+ **State Dimensions:**
122
+ ```
123
+ observation.state: [psm1_j1, psm1_j2, psm1_j3, psm1_j4, psm1_j5, psm1_j6,
124
+ psm2_j1, psm2_j2, psm2_j3, psm2_j4, psm2_j5, psm2_j6]
125
+ - psm1_j1-j6: PSM1 6-DOF joint positions (radians)
126
+ - psm2_j1-j6: PSM2 6-DOF joint positions (radians)
127
+ ```
128
+
129
+ ---
130
+
131
+ ## Data Synchronization Approach
132
+
133
+ All data are acquired using rosbag and all ROS messages are stamped with their header.stamp fields.
134
+ Data is synchronized offline post collection. The right camera serves as the reference timestamp source. For each frame acquired, only the (time) closest data is saved from robot kinematics, with a tolerance of 0.1 secs.
135
+
136
+ **Synchronization Method:**
137
+ - Reference stream: `/decklink/right/image_raw/compressed` (right stereo camera)
138
+ - Tolerance: 0.1 seconds
139
+ - Framework: ROS (Robot Operating System)
140
+
141
+ Messages from the following topics are synchronized:
142
+ - `/decklink/left/image_raw/compressed` - Left camera images
143
+ - `/decklink/right/image_raw/compressed` - Right camera images
144
+ - `/PSM1/measured_js` - PSM1 joint states
145
+ - `/PSM1/measured_cp` - PSM1 absolute cartesian position
146
+ - `/PSM2/measured_js` - PSM2 joint states
147
+ - `/PSM2/measured_cp` - PSM2 absolute cartesian position
148
+
149
+ ---
150
+
151
+ ## Attribution & Contact
152
+
153
+ | | |
154
+ | :--- | :--- |
155
+ | **Dataset Lead** | Matteo Pescio, Francesco Marzola, Luigi Muratore, Federica Barontini, Giovanni Distefano, Federico Lavagno, Giulio Dagnino, Alberto Arezzo |
156
+ | **Institution** | MITIC Lab - Università degli Studi di Torino |
157
+ | **Contact Email** | matteo.pescio@unito.it, francesco.marzola@unito.it, luigi.muratore@studenti.polito.it, federica.barontini@unito.it, giovanni.distefano@unito.it, federico.lavagno@unito.it, giulio.dagnino@unito.it, alberto.arezzo@unito.it |
158
+ | **Citation (BibTeX)** | <pre>@misc{dvrk_suturing_subtasks_2025,<br> author = {Pescio, Matteo and Marzola, Francesco and Muratore, Luigi and Barontini, Federica and Distefano, Giovanni and Lavagno, Federico and Dagnino, Giulio and Arezzo, Alberto},<br> title = {DVRK Suturing Subtasks Dataset},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br>}</pre> |
159
+
160
+ ---
Surgical/turin/mitic_lerobot_plastic_pad_3dmed/README.md ADDED
@@ -0,0 +1,160 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # DVRK Suturing Subtasks Dataset - README
2
+
3
+ ---
4
+
5
+ ## At a Glance
6
+
7
+ Teleoperated demonstrations of a dVRK robot performing suturing subtasksk, like tissue lifting, needle insertion, needle extraction, knot tying on plastic phantom.
8
+
9
+ ---
10
+
11
+ ## Dataset Overview
12
+
13
+ | | |
14
+ | :--- | :--- |
15
+ | **Total Trajectories** | 370 |
16
+ | **Total Hours** | [TO be filled] |
17
+ | **Data Type** | Ex-Vivo |
18
+ | **License** | CC BY 4.0 |
19
+ | **Version** | 1.0 |
20
+
21
+ ---
22
+
23
+ ## Tasks & Domain
24
+
25
+ ### Domain
26
+
27
+ - [x] **Surgical Robotics**
28
+ - [ ] **Ultrasound Robotics**
29
+ - [ ] **Other Healthcare Robotics**
30
+
31
+ ### Demonstrated Skills
32
+
33
+ - Bimanual manipulation
34
+ - Pick and place
35
+ - Needle handling
36
+ - Knot tying
37
+ - Soft tissue manipulation
38
+
39
+ ---
40
+
41
+ ## Data Collection Details
42
+
43
+ ### Collection Method
44
+
45
+ - [x] **Human Teleoperation**
46
+ - [ ] **Programmatic/State-Machine**
47
+ - [ ] **AI Policy / Autonomous**
48
+ - [ ] **Other**
49
+
50
+ ### Operator Details
51
+
52
+ | | Description |
53
+ | :--- | :--- |
54
+ | **Operator Count** | 5 operators |
55
+ | **Operator Skill Level** | Expert (Surgeons) and Novice (ML researchers with minimal surgical experience) |
56
+ | **Collection Period** | [To be filled] |
57
+
58
+ ### Recovery Demonstrations
59
+
60
+ - [x] **Yes**
61
+ - [] **No**
62
+
63
+ For each task, recovery demonstrations and errors are recorded.
64
+
65
+ ---
66
+
67
+ ## Diversity Dimensions
68
+
69
+ - [x] **Target Object** (different wounds for suturing and different anatomical specimens)
70
+ - [] **Spatial Layout**
71
+ - [x] **Camera Position / Angle** (different position and orientations)
72
+ - [x] **Lighting Conditions**
73
+ - [ ] **Robot Embodiment**
74
+ - [x] **Task Execution** (different operators performed the tasks differently)
75
+ - [x] **Background / Scene** (different background conditions)
76
+
77
+ We have recorded tasks on a plastic phantom. Camera position and lighting condition were changed after every 20 episodes circa. We recruited 3 expert surgeons and 2 ML researchers that performed the tasks according to their expertise and own techniques. The background conditions change between colon and stomach episodes.
78
+
79
+ ---
80
+
81
+ ## Equipment & Setup
82
+
83
+ ### Robotic Platform(s)
84
+
85
+ - **Robot 1:** dVRK (da Vinci Research Kit)
86
+
87
+ ### Sensors & Cameras
88
+
89
+ | Type | Model/Details |
90
+ | :--- | :--- |
91
+ | **Primary Camera** | Stereo Endoscope (left), 1920x1080 @ 30 fps |
92
+ | **Secondary Camera** | Stereo Endoscope (right), 1920x1080 @ 30 fps |
93
+
94
+ ---
95
+
96
+ ## Action & State Space Representation
97
+
98
+ ### Action Space Representation
99
+
100
+ **Primary Action Representation:**
101
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
102
+
103
+ **Orientation Representation:**
104
+ - [x] **Quaternions** (x, y, z, w)
105
+
106
+ **Action Dimensions:**
107
+ ```
108
+ action: [psm1_x, psm1_y, psm1_z, psm1_qx, psm1_qy, psm1_qz, psm1_qw,
109
+ psm2_x, psm2_y, psm2_z, psm2_qx, psm2_qy, psm2_qz, psm2_qw]
110
+ - psm1_x, psm1_y, psm1_z: PSM1 absolute cartesian positions
111
+ - psm1_qx, psm1_qy, psm1_qz, psm1_qw: PSM1 absolute cartesian orientations
112
+ - psm2_x, psm2_y, psm2_z: PSM2 absolute cartesian positions
113
+ - psm2_qx, psm2_qy, psm2_qz, psm2_qw: PSM2 absolute cartesian orientations
114
+ ```
115
+
116
+ ### State Space Representation
117
+
118
+ **State Information Included:**
119
+ - [x] **Joint Positions** (all articulated joints)
120
+
121
+ **State Dimensions:**
122
+ ```
123
+ observation.state: [psm1_j1, psm1_j2, psm1_j3, psm1_j4, psm1_j5, psm1_j6,
124
+ psm2_j1, psm2_j2, psm2_j3, psm2_j4, psm2_j5, psm2_j6]
125
+ - psm1_j1-j6: PSM1 6-DOF joint positions (radians)
126
+ - psm2_j1-j6: PSM2 6-DOF joint positions (radians)
127
+ ```
128
+
129
+ ---
130
+
131
+ ## Data Synchronization Approach
132
+
133
+ All data are acquired using rosbag and all ROS messages are stamped with their header.stamp fields.
134
+ Data is synchronized offline post collection. The right camera serves as the reference timestamp source. For each frame acquired, only the (time) closest data is saved from robot kinematics, with a tolerance of 0.1 secs.
135
+
136
+ **Synchronization Method:**
137
+ - Reference stream: `/decklink/right/image_raw/compressed` (right stereo camera)
138
+ - Tolerance: 0.1 seconds
139
+ - Framework: ROS (Robot Operating System)
140
+
141
+ Messages from the following topics are synchronized:
142
+ - `/decklink/left/image_raw/compressed` - Left camera images
143
+ - `/decklink/right/image_raw/compressed` - Right camera images
144
+ - `/PSM1/measured_js` - PSM1 joint states
145
+ - `/PSM1/measured_cp` - PSM1 absolute cartesian position
146
+ - `/PSM2/measured_js` - PSM2 joint states
147
+ - `/PSM2/measured_cp` - PSM2 absolute cartesian position
148
+
149
+ ---
150
+
151
+ ## Attribution & Contact
152
+
153
+ | | |
154
+ | :--- | :--- |
155
+ | **Dataset Lead** | Matteo Pescio, Francesco Marzola, Luigi Muratore, Federica Barontini, Giovanni Distefano, Federico Lavagno, Giulio Dagnino, Alberto Arezzo |
156
+ | **Institution** | MITIC Lab - Università degli Studi di Torino |
157
+ | **Contact Email** | matteo.pescio@unito.it, francesco.marzola@unito.it, luigi.muratore@studenti.polito.it, federica.barontini@unito.it, giovanni.distefano@unito.it, federico.lavagno@unito.it, giulio.dagnino@unito.it, alberto.arezzo@unito.it |
158
+ | **Citation (BibTeX)** | <pre>@misc{dvrk_suturing_subtasks_2025,<br> author = {Pescio, Matteo and Marzola, Francesco and Muratore, Luigi and Barontini, Federica and Distefano, Giovanni and Lavagno, Federico and Dagnino, Giulio and Arezzo, Alberto},<br> title = {DVRK Suturing Subtasks Dataset},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br>}</pre> |
159
+
160
+ ---
Surgical/turin/mitic_lerobot_plastic_tube/README.md ADDED
@@ -0,0 +1,160 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # DVRK Suturing Subtasks Dataset - README
2
+
3
+ ---
4
+
5
+ ## At a Glance
6
+
7
+ Teleoperated demonstrations of a dVRK robot performing suturing subtasksk, like tissue lifting, needle insertion, needle extraction, knot tying on plastic phantom.
8
+
9
+ ---
10
+
11
+ ## Dataset Overview
12
+
13
+ | | |
14
+ | :--- | :--- |
15
+ | **Total Trajectories** | 480 |
16
+ | **Total Hours** | [TO be filled] |
17
+ | **Data Type** | Ex-Vivo |
18
+ | **License** | CC BY 4.0 |
19
+ | **Version** | 1.0 |
20
+
21
+ ---
22
+
23
+ ## Tasks & Domain
24
+
25
+ ### Domain
26
+
27
+ - [x] **Surgical Robotics**
28
+ - [ ] **Ultrasound Robotics**
29
+ - [ ] **Other Healthcare Robotics**
30
+
31
+ ### Demonstrated Skills
32
+
33
+ - Bimanual manipulation
34
+ - Pick and place
35
+ - Needle handling
36
+ - Knot tying
37
+ - Soft tissue manipulation
38
+
39
+ ---
40
+
41
+ ## Data Collection Details
42
+
43
+ ### Collection Method
44
+
45
+ - [x] **Human Teleoperation**
46
+ - [ ] **Programmatic/State-Machine**
47
+ - [ ] **AI Policy / Autonomous**
48
+ - [ ] **Other**
49
+
50
+ ### Operator Details
51
+
52
+ | | Description |
53
+ | :--- | :--- |
54
+ | **Operator Count** | 5 operators |
55
+ | **Operator Skill Level** | Expert (Surgeons) and Novice (ML researchers with minimal surgical experience) |
56
+ | **Collection Period** | [To be filled] |
57
+
58
+ ### Recovery Demonstrations
59
+
60
+ - [x] **Yes**
61
+ - [] **No**
62
+
63
+ For each task, recovery demonstrations and errors are recorded.
64
+
65
+ ---
66
+
67
+ ## Diversity Dimensions
68
+
69
+ - [x] **Target Object** (different wounds for suturing and different anatomical specimens)
70
+ - [] **Spatial Layout**
71
+ - [x] **Camera Position / Angle** (different position and orientations)
72
+ - [x] **Lighting Conditions**
73
+ - [ ] **Robot Embodiment**
74
+ - [x] **Task Execution** (different operators performed the tasks differently)
75
+ - [x] **Background / Scene** (different background conditions)
76
+
77
+ We have recorded tasks on a plastic phantom. Camera position and lighting condition were changed after every 20 episodes circa. We recruited 3 expert surgeons and 2 ML researchers that performed the tasks according to their expertise and own techniques. The background conditions change between colon and stomach episodes.
78
+
79
+ ---
80
+
81
+ ## Equipment & Setup
82
+
83
+ ### Robotic Platform(s)
84
+
85
+ - **Robot 1:** dVRK (da Vinci Research Kit)
86
+
87
+ ### Sensors & Cameras
88
+
89
+ | Type | Model/Details |
90
+ | :--- | :--- |
91
+ | **Primary Camera** | Stereo Endoscope (left), 1920x1080 @ 30 fps |
92
+ | **Secondary Camera** | Stereo Endoscope (right), 1920x1080 @ 30 fps |
93
+
94
+ ---
95
+
96
+ ## Action & State Space Representation
97
+
98
+ ### Action Space Representation
99
+
100
+ **Primary Action Representation:**
101
+ - [x] **Absolute Cartesian** (position/orientation relative to robot base)
102
+
103
+ **Orientation Representation:**
104
+ - [x] **Quaternions** (x, y, z, w)
105
+
106
+ **Action Dimensions:**
107
+ ```
108
+ action: [psm1_x, psm1_y, psm1_z, psm1_qx, psm1_qy, psm1_qz, psm1_qw,
109
+ psm2_x, psm2_y, psm2_z, psm2_qx, psm2_qy, psm2_qz, psm2_qw]
110
+ - psm1_x, psm1_y, psm1_z: PSM1 absolute cartesian positions
111
+ - psm1_qx, psm1_qy, psm1_qz, psm1_qw: PSM1 absolute cartesian orientations
112
+ - psm2_x, psm2_y, psm2_z: PSM2 absolute cartesian positions
113
+ - psm2_qx, psm2_qy, psm2_qz, psm2_qw: PSM2 absolute cartesian orientations
114
+ ```
115
+
116
+ ### State Space Representation
117
+
118
+ **State Information Included:**
119
+ - [x] **Joint Positions** (all articulated joints)
120
+
121
+ **State Dimensions:**
122
+ ```
123
+ observation.state: [psm1_j1, psm1_j2, psm1_j3, psm1_j4, psm1_j5, psm1_j6,
124
+ psm2_j1, psm2_j2, psm2_j3, psm2_j4, psm2_j5, psm2_j6]
125
+ - psm1_j1-j6: PSM1 6-DOF joint positions (radians)
126
+ - psm2_j1-j6: PSM2 6-DOF joint positions (radians)
127
+ ```
128
+
129
+ ---
130
+
131
+ ## Data Synchronization Approach
132
+
133
+ All data are acquired using rosbag and all ROS messages are stamped with their header.stamp fields.
134
+ Data is synchronized offline post collection. The right camera serves as the reference timestamp source. For each frame acquired, only the (time) closest data is saved from robot kinematics, with a tolerance of 0.1 secs.
135
+
136
+ **Synchronization Method:**
137
+ - Reference stream: `/decklink/right/image_raw/compressed` (right stereo camera)
138
+ - Tolerance: 0.1 seconds
139
+ - Framework: ROS (Robot Operating System)
140
+
141
+ Messages from the following topics are synchronized:
142
+ - `/decklink/left/image_raw/compressed` - Left camera images
143
+ - `/decklink/right/image_raw/compressed` - Right camera images
144
+ - `/PSM1/measured_js` - PSM1 joint states
145
+ - `/PSM1/measured_cp` - PSM1 absolute cartesian position
146
+ - `/PSM2/measured_js` - PSM2 joint states
147
+ - `/PSM2/measured_cp` - PSM2 absolute cartesian position
148
+
149
+ ---
150
+
151
+ ## Attribution & Contact
152
+
153
+ | | |
154
+ | :--- | :--- |
155
+ | **Dataset Lead** | Matteo Pescio, Francesco Marzola, Luigi Muratore, Federica Barontini, Giovanni Distefano, Federico Lavagno, Giulio Dagnino, Alberto Arezzo |
156
+ | **Institution** | MITIC Lab - Università degli Studi di Torino |
157
+ | **Contact Email** | matteo.pescio@unito.it, francesco.marzola@unito.it, luigi.muratore@studenti.polito.it, federica.barontini@unito.it, giovanni.distefano@unito.it, federico.lavagno@unito.it, giulio.dagnino@unito.it, alberto.arezzo@unito.it |
158
+ | **Citation (BibTeX)** | <pre>@misc{dvrk_suturing_subtasks_2025,<br> author = {Pescio, Matteo and Marzola, Francesco and Muratore, Luigi and Barontini, Federica and Distefano, Giovanni and Lavagno, Federico and Dagnino, Giulio and Arezzo, Alberto},<br> title = {DVRK Suturing Subtasks Dataset},<br> year = {2025},<br> publisher = {Open-H-Embodiment},<br>}</pre> |
159
+
160
+ ---
Surgical/ucsd/surgical_learning_dataset/README.md ADDED
@@ -0,0 +1,227 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Retraction and Dissection Dataset
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ Teleoperated demonstrations of surgical retraction and tissue dissection tasks collected for learning-based robotic manipulation.
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ This dataset contains expert teleoperated demonstrations of **retraction** and **dissection**, two fundamental subtasks in surgical manipulation workflows.
14
+ The dataset is designed to support **imitation learning**, **policy learning**, and **multi-skill robotic manipulation** in contact-rich and constrained environments.
15
+
16
+ Demonstrations include both successful executions and recovery behaviors from suboptimal states, enabling robust policy learning under realistic failure conditions.
17
+
18
+ | | |
19
+ | :--- | :--- |
20
+ | **Total Trajectories** | 1200 |
21
+ | **Total Hours** | 18.5 |
22
+ | **Data Type** | [ ] Clinical [ ] Ex-Vivo [x] Table-Top Phantom [ ] Digital Simulation [ ] Physical Simulation |
23
+ | **License** | CC BY 4.0 |
24
+ | **Version** | 1.0 |
25
+
26
+ ---
27
+
28
+ ## 🎯 Tasks & Domain
29
+
30
+ ### Domain
31
+
32
+ - [x] Surgical Robotics
33
+ - [ ] Ultrasound Robotics
34
+ - [ ] Other Healthcare Robotics
35
+
36
+ ### Demonstrated Skills
37
+
38
+ This dataset focuses on two complementary surgical manipulation skills:
39
+
40
+ - **Retraction**
41
+ - Grasping deformable tissue or surrogate material
42
+ - Maintaining stable and continuous tension
43
+ - Adjusting pulling direction to expose the target region
44
+
45
+ - **Dissection**
46
+ - Tool alignment and approach
47
+ - Controlled cutting along tissue boundaries
48
+ - Coordinated motion between retraction and cutting tools
49
+
50
+ ---
51
+
52
+ ## 🔬 Data Collection Details
53
+
54
+ ### Collection Method
55
+
56
+ - [x] Human Teleoperation
57
+ - [ ] Programmatic / State-Machine
58
+ - [ ] AI Policy / Autonomous
59
+
60
+ ### Operator Details
61
+
62
+ | | Description |
63
+ | :--- | :--- |
64
+ | **Operator Count** | 2 |
65
+ | **Operator Skill Level** | Intermediate (Trained Researcher) |
66
+ | **Collection Period** | 2024-06-01 to 2024-08-30 |
67
+
68
+ ### Recovery Demonstrations
69
+
70
+ - [x] Yes
71
+ - [ ] No
72
+
73
+ **Description:**
74
+ Recovery demonstrations include failed grasps, insufficient tissue tension, and misaligned cutting trajectories.
75
+ Operators re-orient tools, re-establish stable contact, and resume task execution from intermediate states.
76
+
77
+ ---
78
+
79
+ ## 💡 Diversity Dimensions
80
+
81
+ - [x] Camera Position / Angle
82
+ - [ ] Lighting Conditions
83
+ - [x] Target Object
84
+ - [x] Spatial Layout
85
+ - [ ] Robot Embodiment
86
+ - [x] Task Execution
87
+ - [ ] Background / Scene
88
+
89
+ **Elaboration:**
90
+ Target tissue phantoms are placed at varying positions and orientations.
91
+ Operators employ different retraction directions and dissection strategies to encourage behavioral diversity.
92
+
93
+ ---
94
+
95
+ ## 🛠️ Equipment & Setup
96
+
97
+ ### Robotic Platform
98
+
99
+ - da Vinci Research Kit (dVRK)
100
+
101
+ ### Sensors & Cameras
102
+
103
+ | Type | Model / Details |
104
+ | :--- | :--- |
105
+ | Primary Camera | Endoscopic camera, 1920×1080 @ 30fps |
106
+ | Room Camera | Fixed external RGB camera |
107
+ | Force/Torque Sensor | Not available |
108
+ | Other Sensors | Robot joint encoders |
109
+
110
+ ---
111
+
112
+ ## 🎯 Action & State Space Representation
113
+
114
+ ### Action Space Representation
115
+
116
+ **Primary Action Representation:**
117
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
118
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
119
+ - [ ] **Joint Space** (direct joint angle commands)
120
+ - [ ] **Other**
121
+
122
+ **Orientation Representation:**
123
+ - [x] **Quaternions** (x, y, z, w)
124
+ - [ ] **Euler Angles**
125
+ - [ ] **Axis-Angle**
126
+ - [ ] **Rotation Matrix**
127
+ - [ ] **Other**
128
+
129
+ **Reference Frame:**
130
+ - [ ] **Robot Base Frame**
131
+ - [ ] **Tool/End-Effector Frame**
132
+ - [ ] **World/Global Frame**
133
+ - [ ] **Camera Frame**
134
+ - [x] **Other** (Delta end-effector pose commands; reference frame not explicitly specified)
135
+
136
+ **Action Dimensions:**
137
+ ```
138
+ action: [
139
+ dPSM_RETRACTION_x,
140
+ dPSM_RETRACTION_y,
141
+ dPSM_RETRACTION_z,
142
+ dPSM_RETRACTION_qw,
143
+ dPSM_RETRACTION_qx,
144
+ dPSM_RETRACTION_qy,
145
+ dPSM_RETRACTION_qz,
146
+ dPSM_RETRACTION_gripper,
147
+ dPSM_CUTTER_x,
148
+ dPSM_CUTTER_y,
149
+ dPSM_CUTTER_z,
150
+ dPSM_CUTTER_qw,
151
+ dPSM_CUTTER_qx,
152
+ dPSM_CUTTER_qy,
153
+ dPSM_CUTTER_qz,
154
+ dPSM_CUTTER_gripper
155
+ ]
156
+ ```
157
+
158
+ - 16-D float32 action vector per timestep
159
+ - Relative end-effector pose updates for two PSMs
160
+ - Quaternion-based orientation deltas
161
+ - Gripper control commands
162
+
163
+ ---
164
+
165
+ ### State Space Representation
166
+
167
+ **State Information Included:**
168
+ - [x] **Joint Positions**
169
+ - [x] **Joint Velocities**
170
+ - [x] **End-Effector Pose**
171
+ - [ ] **Force/Torque Readings**
172
+ - [x] **Gripper State**
173
+ - [x] **Other** (joint efforts, dissection target points)
174
+
175
+ **State Dimensions:**
176
+ ```
177
+ observation.state: [
178
+ psm_retraction_joint_positions (6),
179
+ psm_retraction_joint_velocities (6),
180
+ psm_retraction_joint_efforts (6),
181
+ psm_retraction_gripper_state (2),
182
+ psm_cutter_joint_positions (6),
183
+ psm_cutter_joint_velocities (6),
184
+ psm_cutter_joint_efforts (6),
185
+ psm_cutter_gripper_state (2),
186
+ retraction_end_effector_pose (7),
187
+ cutter_end_effector_pose (7),
188
+ dissection_target_points (8)
189
+ ]
190
+ ```
191
+
192
+ - 62-D float32 state vector
193
+ - Full kinematic + effort feedback for both PSMs
194
+ - End-effector poses as position + quaternion
195
+ - Four 2D dissection target points
196
+
197
+ ## ⏱️ Data Synchronization Approach
198
+
199
+ All robot state signals, action commands, and stereo endoscopic video streams are synchronized using a shared system clock during data collection.
200
+ Each frame is timestamped at capture time and aligned at a fixed rate of **30 FPS**.
201
+
202
+ Specifically:
203
+ - Robot joint states, end-effector poses, gripper states, and action commands are recorded at the control loop frequency.
204
+ - Stereo endoscopic videos (`observation.images.left` and `observation.images.right`) are captured at 30 FPS and timestamped using the same clock.
205
+ - During dataset export, all modalities are aligned by timestamp to form per-frame observations stored in parquet files.
206
+
207
+ This ensures consistent temporal correspondence between visual observations, robot kinematics, and control actions across the entire dataset.
208
+
209
+ ---
210
+
211
+ ## 👥 Attribution & Contact
212
+
213
+ | | |
214
+ | :--- | :--- |
215
+ | **Dataset Lead** | Changwei Chen, Yinuo Yang, Xiao Liang, Michael Yip |
216
+ | **Institution** | Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA 92093, USA |
217
+ | **Contact Email** | {chc165, yiy124 ,x5liang, yip}@ucsd.edu |
218
+ | **Citation (BibTeX)** | @misc{ucsd_openh_phantom_2026, author = {Chen, Changwei and Yang, Yinuo and Liang, Xiao and Yip, Michael}, title = {UC San Diego Phantom Surgical Robotics Dataset (Open-H Embodiment)}, year = {2026}, publisher = {Open-H Embodiment}, note = {Dataset will be released via Open-H Embodiment; link/DOI forthcoming. Contact: chc165@ucsd.edu}
219
+ } |## 👥 Attribution & Contact
220
+
221
+ | | |
222
+ | :--- | :--- |
223
+ | **Dataset Lead** | Changwei Chen, Yinuo Yang, Xiao Liang, Michael Yip |
224
+ | **Institution** | Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA 92093, USA |
225
+ | **Contact Email** | {chc165, yiy124 ,x5liang, yip}@ucsd.edu |
226
+ | **Citation (BibTeX)** | @misc{ucsd_openh_phantom_2026, author = {Chen, Changwei and Yang, Yinuo and Liang, Xiao and Yip, Michael}, title = {UC San Diego Phantom Surgical Robotics Dataset (Open-H Embodiment)}, year = {2026}, publisher = {Open-H Embodiment}, note = {Dataset will be released via Open-H Embodiment; link/DOI forthcoming. Contact: chc165@ucsd.edu}
227
+ } |
Surgical/ucsd/surgical_learning_dataset2/README.md ADDED
@@ -0,0 +1,211 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Retraction Dataset
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ Teleoperated demonstrations of surgical retraction tasks collected for learning-based robotic manipulation on the da Vinci Research Kit (dVRK).
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ This dataset contains expert teleoperated demonstrations of **retraction**, a fundamental subtask in surgical manipulation workflows.
14
+ The dataset is designed to support **imitation learning**, **policy learning**, and **robot state–conditioned control** in contact-rich and constrained environments.
15
+
16
+ Demonstrations focus on stable tissue grasping and tension adjustment behaviors.
17
+
18
+ | | |
19
+ | :--- | :--- |
20
+ | **Total Trajectories** | 200 |
21
+ | **Total Hours** | ~0.24 |
22
+ | **Data Type** | [ ] Clinical [ ] Ex-Vivo [x] Table-Top Phantom [ ] Digital Simulation [ ] Physical Simulation |
23
+ | **Robot Platform** | da Vinci Research Kit (dVRK) |
24
+ | **FPS** | 30 |
25
+ | **License** | CC BY 4.0 |
26
+ | **Version** | 1.0 |
27
+
28
+ ---
29
+
30
+ ## 🎯 Tasks & Domain
31
+
32
+ ### Domain
33
+
34
+ - [x] Surgical Robotics
35
+ - [ ] Ultrasound Robotics
36
+ - [ ] Other Healthcare Robotics
37
+
38
+ ### Demonstrated Skills
39
+
40
+ This dataset focuses on a single surgical manipulation skill:
41
+
42
+ - **Retraction**
43
+ - Grasping deformable tissue or surrogate material
44
+ - Maintaining stable and continuous tension
45
+ - Adjusting pulling direction to expose target regions
46
+
47
+ Task semantics are provided via `instruction.text` for each episode.
48
+
49
+ ---
50
+
51
+ ## 🔬 Data Collection Details
52
+
53
+ ### Collection Method
54
+
55
+ - [x] Human Teleoperation
56
+ - [ ] Programmatic / State-Machine
57
+ - [ ] AI Policy / Autonomous
58
+
59
+ ### Operator Details
60
+
61
+ | | Description |
62
+ | :--- | :--- |
63
+ | **Operator Count** | 2 |
64
+ | **Operator Skill Level** | Intermediate (Trained Researcher) |
65
+ | **Collection Period** | 2024-06-01 to 2024-08-30 |
66
+
67
+ ### Recovery Demonstrations
68
+
69
+ - [ ] Yes
70
+ - [x] No
71
+
72
+ ---
73
+
74
+ ## 💡 Diversity Dimensions
75
+
76
+ - [ ] Camera Position / Angle
77
+ - [ ] Lighting Conditions
78
+ - [x] Target Object
79
+ - [x] Spatial Layout
80
+ - [ ] Robot Embodiment
81
+ - [x] Task Execution
82
+ - [ ] Background / Scene
83
+
84
+ **Elaboration:**
85
+ Target tissue phantoms are placed at varying positions and orientations.
86
+ Operators employ different retraction directions to encourage behavioral diversity.
87
+
88
+ ---
89
+
90
+ ## 🛠️ Equipment & Setup
91
+
92
+ ### Robotic Platform
93
+
94
+ - **da Vinci Research Kit (dVRK)**
95
+ - Dual PSM configuration:
96
+ - Bipolar Forceps (Retraction)
97
+ - Potts Scissors (present but not actively used for cutting in this dataset)
98
+
99
+ ### Sensors & Cameras
100
+
101
+ | Type | Model / Details |
102
+ | :--- | :--- |
103
+ | Primary Camera | Stereo endoscopic cameras, 480×640 @ 30fps |
104
+ | Room Camera | Not used |
105
+ | Force/Torque Sensor | Not available |
106
+ | Other Sensors | Robot joint encoders |
107
+
108
+ ---
109
+
110
+ ## 🎯 Action & State Space Representation
111
+
112
+ ### Action Space Representation
113
+
114
+ **Primary Action Representation:**
115
+ - [ ] Absolute Cartesian
116
+ - [x] Relative Cartesian (delta end-effector pose)
117
+ - [ ] Joint Space
118
+ - [ ] Other
119
+
120
+ **Orientation Representation:**
121
+ - [x] Quaternions (qw, qx, qy, qz)
122
+ - [ ] **Euler Angles**
123
+ - [ ] **Axis-Angle**
124
+ - [ ] **Rotation Matrix**
125
+ - [ ] **Other**
126
+
127
+ **Reference Frame:**
128
+ - [ ] **Robot Base Frame**
129
+ - [ ] **Tool/End-Effector Frame**
130
+ - [ ] **World/Global Frame**
131
+ - [ ] **Camera Frame**
132
+ - [x] Other (delta end-effector pose commands; reference frame not explicitly specified)
133
+
134
+ **Action Dimensions:**
135
+ ```
136
+ action: [
137
+ dPSM_RETRACTION_x,
138
+ dPSM_RETRACTION_y,
139
+ dPSM_RETRACTION_z,
140
+ dPSM_RETRACTION_qw,
141
+ dPSM_RETRACTION_qx,
142
+ dPSM_RETRACTION_qy,
143
+ dPSM_RETRACTION_qz,
144
+ dPSM_RETRACTION_gripper,
145
+ dPSM_CUTTER_x,
146
+ dPSM_CUTTER_y,
147
+ dPSM_CUTTER_z,
148
+ dPSM_CUTTER_qw,
149
+ dPSM_CUTTER_qx,
150
+ dPSM_CUTTER_qy,
151
+ dPSM_CUTTER_qz,
152
+ dPSM_CUTTER_gripper
153
+ ]
154
+ ```
155
+
156
+ - 16-D float32 action vector per timestep
157
+ - Relative end-effector pose updates for two PSMs
158
+ - Quaternion-based orientation deltas
159
+ - Gripper control commands
160
+
161
+ ---
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] Joint Positions
167
+ - [x] End-Effector Pose
168
+ - [x] Gripper State
169
+ - [ ] Joint Velocities
170
+ - [ ] Joint Efforts
171
+ - [ ] Force/Torque Readings
172
+
173
+ **State Dimensions (28D):**
174
+ ```
175
+ observation.state: [
176
+ psm_retraction_joint_positions (6),
177
+ psm_retraction_gripper_pos (1),
178
+ psm_cutter_joint_positions (6),
179
+ psm_cutter_gripper_pos (1),
180
+ retraction_end_effector_pose (7),
181
+ cutter_end_effector_pose (7)
182
+ ]
183
+ ```
184
+
185
+ - `observation.state` is a 28-D float32 vector
186
+ - Contains joint positions, gripper states, and EE poses
187
+ - No velocities or effort terms are included
188
+
189
+ ---
190
+
191
+ ## ⏱️ Data Synchronization Approach
192
+
193
+ All robot state signals, action commands, and stereo endoscopic video streams are synchronized using a shared system clock during data collection.
194
+
195
+ - Robot states and actions are recorded at the control frequency.
196
+ - Stereo endoscopic videos are captured at **30 FPS**.
197
+ - During dataset export, all modalities are aligned by timestamp and stored per frame in parquet format.
198
+
199
+ This ensures consistent temporal correspondence between visual observations and robot kinematics across the dataset.
200
+
201
+ ---
202
+
203
+ ## 👥 Attribution & Contact
204
+
205
+ | | |
206
+ | :--- | :--- |
207
+ | **Dataset Lead** | Changwei Chen, Yinuo Yang, Xiao Liang, Michael Yip |
208
+ | **Institution** | Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA 92093, USA |
209
+ | **Contact Email** | {chc165, yiy124 ,x5liang, yip}@ucsd.edu |
210
+ | **Citation (BibTeX)** | @misc{ucsd_openh_phantom_2026, author = {Chen, Changwei and Yang, Yinuo and Liang, Xiao and Yip, Michael}, title = {UC San Diego Phantom Surgical Robotics Dataset (Open-H Embodiment)}, year = {2026}, publisher = {Open-H Embodiment}, note = {Dataset will be released via Open-H Embodiment; link/DOI forthcoming. Contact: chc165@ucsd.edu}
211
+ } |
Surgical/ucsd/surgical_learning_retraction_dataset3/README.md ADDED
@@ -0,0 +1,215 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Retraction and Dissection Dataset
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ Teleoperated demonstrations of surgical retraction tasks collected for learning-based robotic manipulation on the da Vinci Research Kit (dVRK).
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ This dataset contains expert teleoperated demonstrations of **retraction**, a fundamental subtask in surgical manipulation workflows.
14
+ The dataset is designed to support **imitation learning**, **policy learning**, and **robot state–conditioned control** in contact-rich and constrained environments.
15
+
16
+ Demonstrations focus on stable tissue grasping and tension adjustment behaviors.
17
+
18
+ | | |
19
+ | :--- | :--- |
20
+ | **Total Trajectories** | 598 |
21
+ | **Total Hours** | ~1.70 |
22
+ | **Data Type** | [ ] Clinical [ ] Ex-Vivo [x] Table-Top Phantom [ ] Digital Simulation [ ] Physical Simulation |
23
+ | **Robot Platform** | da Vinci Research Kit (dVRK) |
24
+ | **FPS** | 30 |
25
+ | **License** | CC BY 4.0 |
26
+ | **Version** | 1.0 |
27
+
28
+ ---
29
+
30
+ ## 🎯 Tasks & Domain
31
+
32
+ ### Domain
33
+
34
+ - [x] Surgical Robotics
35
+ - [ ] Ultrasound Robotics
36
+ - [ ] Other Healthcare Robotics
37
+
38
+ ### Demonstrated Skills
39
+
40
+ This dataset focuses on a single surgical manipulation skill:
41
+
42
+ - **Retraction**
43
+ - Grasping deformable tissue or surrogate material
44
+ - Maintaining stable and continuous tension
45
+ - Adjusting pulling direction to expose target regions
46
+
47
+ Task semantics are provided via `instruction.text` for each episode.
48
+
49
+ ---
50
+
51
+ ## 🔬 Data Collection Details
52
+
53
+ ### Collection Method
54
+
55
+ - [x] Human Teleoperation
56
+ - [ ] Programmatic / State-Machine
57
+ - [ ] AI Policy / Autonomous
58
+
59
+ ### Operator Details
60
+
61
+ | | Description |
62
+ | :--- | :--- |
63
+ | **Operator Count** | 2 |
64
+ | **Operator Skill Level** | Intermediate (Trained Researcher) |
65
+ | **Collection Period** | 2024-06-01 to 2024-08-30 |
66
+
67
+ ### Recovery Demonstrations
68
+
69
+ - [ ] Yes
70
+ - [x] No
71
+
72
+ ---
73
+
74
+ ## 💡 Diversity Dimensions
75
+
76
+ - [ ] Camera Position / Angle
77
+ - [ ] Lighting Conditions
78
+ - [x] Target Object
79
+ - [x] Spatial Layout
80
+ - [ ] Robot Embodiment
81
+ - [x] Task Execution
82
+ - [ ] Background / Scene
83
+
84
+ **Elaboration:**
85
+ Target tissue phantoms are placed at varying positions and orientations.
86
+ Operators employ different retraction directions to encourage behavioral diversity.
87
+
88
+ ---
89
+
90
+ ## 🛠️ Equipment & Setup
91
+
92
+ ### Robotic Platform
93
+
94
+ - **da Vinci Research Kit (dVRK)**
95
+ - Dual PSM configuration:
96
+ - Bipolar Forceps (Retraction)
97
+ - Potts Scissors (present but not actively used for cutting in this dataset)
98
+
99
+ ### Sensors & Cameras
100
+
101
+ | Type | Model / Details |
102
+ | :--- | :--- |
103
+ | Primary Camera | Stereo endoscopic cameras, 480×640 @ 30fps |
104
+ | Room Camera | Not used |
105
+ | Force/Torque Sensor | Not available |
106
+ | Other Sensors | Robot joint encoders |
107
+
108
+ ---
109
+
110
+ ## 🎯 Action & State Space Representation
111
+
112
+ ### Action Space Representation
113
+
114
+ **Primary Action Representation:**
115
+ - [ ] Absolute Cartesian
116
+ - [x] Relative Cartesian (delta end-effector pose)
117
+ - [ ] Joint Space
118
+ - [ ] Other
119
+
120
+ **Orientation Representation:**
121
+ - [x] Quaternions (qw, qx, qy, qz)
122
+ - [ ] **Euler Angles**
123
+ - [ ] **Axis-Angle**
124
+ - [ ] **Rotation Matrix**
125
+ - [ ] **Other**
126
+
127
+ **Reference Frame:**
128
+ - [ ] **Robot Base Frame**
129
+ - [ ] **Tool/End-Effector Frame**
130
+ - [ ] **World/Global Frame**
131
+ - [ ] **Camera Frame**
132
+ - [x] Other (delta end-effector pose commands; reference frame not explicitly specified)
133
+
134
+ **Action Dimensions (16D):**
135
+ ```
136
+ action: [
137
+ dPSM_RETRACTION_x,
138
+ dPSM_RETRACTION_y,
139
+ dPSM_RETRACTION_z,
140
+ dPSM_RETRACTION_qw,
141
+ dPSM_RETRACTION_qx,
142
+ dPSM_RETRACTION_qy,
143
+ dPSM_RETRACTION_qz,
144
+ dPSM_RETRACTION_gripper,
145
+ dPSM_CUTTER_x,
146
+ dPSM_CUTTER_y,
147
+ dPSM_CUTTER_z,
148
+ dPSM_CUTTER_qw,
149
+ dPSM_CUTTER_qx,
150
+ dPSM_CUTTER_qy,
151
+ dPSM_CUTTER_qz,
152
+ dPSM_CUTTER_gripper
153
+ ]
154
+ ```
155
+
156
+ - 16-D float32 action vector per timestep
157
+ - Relative end-effector pose updates for two PSMs
158
+ - Quaternion-based orientation deltas
159
+ - Gripper control commands
160
+
161
+ ---
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] Joint Positions
167
+ - [x] Joint Velocities
168
+ - [x] Joint Efforts
169
+ - [x] End-Effector Pose
170
+ - [x] Gripper State
171
+ - [ ] Force/Torque Readings
172
+
173
+ **State Dimensions (54D):**
174
+ ```
175
+ observation.state: [
176
+ psm_retraction_joint_positions (6),
177
+ psm_retraction_joint_velocities (6),
178
+ psm_retraction_joint_efforts (6),
179
+ psm_retraction_gripper_state (2),
180
+ psm_cutter_joint_positions (6),
181
+ psm_cutter_joint_velocities (6),
182
+ psm_cutter_joint_efforts (6),
183
+ psm_cutter_gripper_state (2),
184
+ retraction_end_effector_pose (7),
185
+ cutter_end_effector_pose (7)
186
+ ]
187
+ ```
188
+
189
+ - `observation.state` is a 54-D float32 vector
190
+ - Includes joint positions, velocities, efforts, gripper states, and EE poses
191
+ - No external force/torque sensors are used
192
+
193
+ ---
194
+
195
+ ## ⏱️ Data Synchronization Approach
196
+
197
+ All robot state signals, action commands, and stereo endoscopic video streams are synchronized using a shared system clock during data collection.
198
+
199
+ - Robot states and actions are recorded at the control frequency.
200
+ - Stereo endoscopic videos are captured at **30 FPS**.
201
+ - During dataset export, all modalities are aligned by timestamp and stored per frame in parquet format.
202
+
203
+ This ensures consistent temporal correspondence between visual observations and robot kinematics across the dataset.
204
+
205
+ ---
206
+
207
+ ## 👥 Attribution & Contact
208
+
209
+ | | |
210
+ | :--- | :--- |
211
+ | **Dataset Lead** | Changwei Chen, Yinuo Yang, Xiao Liang, Michael Yip |
212
+ | **Institution** | Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA 92093, USA |
213
+ | **Contact Email** | {chc165, yiy124 ,x5liang, yip}@ucsd.edu |
214
+ | **Citation (BibTeX)** | @misc{ucsd_openh_phantom_2026, author = {Chen, Changwei and Yang, Yinuo and Liang, Xiao and Yip, Michael}, title = {UC San Diego Phantom Surgical Robotics Dataset (Open-H Embodiment)}, year = {2026}, publisher = {Open-H Embodiment}, note = {Dataset will be released via Open-H Embodiment; link/DOI forthcoming. Contact: chc165@ucsd.edu}
215
+ } |
Surgical/ucsd/surgical_learning_retraction_failurecase/README.md ADDED
@@ -0,0 +1,215 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Retraction Failure-Case Dataset
2
+
3
+ ---
4
+
5
+ ## 📋 At a Glance
6
+
7
+ Teleoperated **failure-case** demonstrations of surgical retraction collected for learning-based robotic manipulation on the da Vinci Research Kit (dVRK).
8
+
9
+ ---
10
+
11
+ ## 📖 Dataset Overview
12
+
13
+ This dataset contains expert teleoperated demonstrations of **retraction failure cases**, capturing unsuccessful or suboptimal executions during surgical manipulation workflows.
14
+ The dataset is designed to support research in **robust imitation learning**, **failure recovery**, **error-aware policy learning**, and **robot state–conditioned control** in contact-rich and constrained environments.
15
+
16
+ Demonstrations include loss of stable grasp, insufficient tissue tension, slippage, and misaligned pulling directions, without successful task completion.
17
+
18
+ | | |
19
+ | :--- | :--- |
20
+ | **Total Trajectories** | 299 |
21
+ | **Total Hours** | ~0.62 |
22
+ | **Data Type** | [ ] Clinical [ ] Ex-Vivo [x] Table-Top Phantom [ ] Digital Simulation [ ] Physical Simulation |
23
+ | **Robot Platform** | da Vinci Research Kit (dVRK) |
24
+ | **FPS** | 30 |
25
+ | **License** | CC BY 4.0 |
26
+ | **Version** | 1.0 |
27
+
28
+ ---
29
+
30
+ ## 🎯 Tasks & Domain
31
+
32
+ ### Domain
33
+
34
+ - [x] Surgical Robotics
35
+ - [ ] Ultrasound Robotics
36
+ - [ ] Other Healthcare Robotics
37
+
38
+ ### Demonstrated Skills
39
+
40
+ This dataset focuses on **failure cases of a single surgical manipulation skill**:
41
+
42
+ - **Retraction (Failure Cases)**
43
+ - Unstable or failed tissue grasp
44
+ - Insufficient or inconsistent tension application
45
+ - Slippage during pulling
46
+ - Misaligned pulling direction leading to task failure
47
+
48
+ Task semantics are provided via `instruction.text` for each episode and indicate failure or unsuccessful execution.
49
+
50
+ ---
51
+
52
+ ## 🔬 Data Collection Details
53
+
54
+ ### Collection Method
55
+
56
+ - [x] Human Teleoperation
57
+ - [ ] Programmatic / State-Machine
58
+ - [ ] AI Policy / Autonomous
59
+
60
+ ### Operator Details
61
+
62
+ | | Description |
63
+ | :--- | :--- |
64
+ | **Operator Count** | 2 |
65
+ | **Operator Skill Level** | Intermediate (Trained Researcher) |
66
+ | **Collection Period** | 2024-06-01 to 2024-08-30 |
67
+
68
+ ### Recovery Demonstrations
69
+
70
+ - [ ] Yes
71
+ - [x] No
72
+
73
+ *Note: Episodes terminate upon task failure and do not include corrective recovery behaviors.*
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ - [ ] Camera Position / Angle
80
+ - [ ] Lighting Conditions
81
+ - [x] Target Object
82
+ - [x] Spatial Layout
83
+ - [ ] Robot Embodiment
84
+ - [x] Failure Mode
85
+ - [ ] Background / Scene
86
+
87
+ **Elaboration:**
88
+ Failures arise from diverse initial conditions, tissue placements, and operator-induced perturbations, resulting in varied failure modes across episodes.
89
+
90
+ ---
91
+
92
+ ## 🛠️ Equipment & Setup
93
+
94
+ ### Robotic Platform
95
+
96
+ - **da Vinci Research Kit (dVRK)**
97
+ - Dual PSM configuration:
98
+ - Bipolar Forceps (Retraction)
99
+ - Potts Scissors (present but not actively used)
100
+
101
+ ### Sensors & Cameras
102
+
103
+ | Type | Model / Details |
104
+ | :--- | :--- |
105
+ | Primary Camera | Stereo endoscopic cameras, 480×640 @ 30fps |
106
+ | Room Camera | Not used |
107
+ | Force/Torque Sensor | Not available |
108
+ | Other Sensors | Robot joint encoders |
109
+
110
+ ---
111
+
112
+ ## 🎯 Action & State Space Representation
113
+
114
+ ### Action Space Representation
115
+
116
+ **Primary Action Representation:**
117
+ - [ ] Absolute Cartesian
118
+ - [x] Relative Cartesian (delta end-effector pose)
119
+ - [ ] Joint Space
120
+ - [ ] Other
121
+
122
+ **Orientation Representation:**
123
+ - [x] Quaternions (qw, qx, qy, qz)
124
+ - [ ] **Euler Angles**
125
+ - [ ] **Axis-Angle**
126
+ - [ ] **Rotation Matrix**
127
+ - [ ] **Other**
128
+
129
+ **Reference Frame:**
130
+ - [ ] **Robot Base Frame**
131
+ - [ ] **Tool/End-Effector Frame**
132
+ - [ ] **World/Global Frame**
133
+ - [ ] **Camera Frame**
134
+ - [x] Other (delta end-effector pose commands; reference frame not explicitly specified)
135
+
136
+ **Action Dimensions (16D):**
137
+ ```
138
+ action: [
139
+ dPSM_RETRACTION_x,
140
+ dPSM_RETRACTION_y,
141
+ dPSM_RETRACTION_z,
142
+ dPSM_RETRACTION_qw,
143
+ dPSM_RETRACTION_qx,
144
+ dPSM_RETRACTION_qy,
145
+ dPSM_RETRACTION_qz,
146
+ dPSM_RETRACTION_gripper,
147
+ dPSM_CUTTER_x,
148
+ dPSM_CUTTER_y,
149
+ dPSM_CUTTER_z,
150
+ dPSM_CUTTER_qw,
151
+ dPSM_CUTTER_qx,
152
+ dPSM_CUTTER_qy,
153
+ dPSM_CUTTER_qz,
154
+ dPSM_CUTTER_gripper
155
+ ]
156
+ ```
157
+
158
+ - Relative end-effector pose updates per timestep
159
+ - Quaternion-based orientation deltas
160
+ - Gripper control commands
161
+
162
+ ---
163
+
164
+ ### State Space Representation
165
+
166
+ **State Information Included:**
167
+ - [x] Joint Positions
168
+ - [x] Joint Velocities
169
+ - [x] Joint Efforts
170
+ - [x] End-Effector Pose
171
+ - [x] Gripper State
172
+ - [ ] Force/Torque Readings
173
+
174
+ **State Dimensions (54D):**
175
+ ```
176
+ observation.state: [
177
+ psm_retraction_joint_positions (6),
178
+ psm_retraction_joint_velocities (6),
179
+ psm_retraction_joint_efforts (6),
180
+ psm_retraction_gripper_state (2),
181
+ psm_cutter_joint_positions (6),
182
+ psm_cutter_joint_velocities (6),
183
+ psm_cutter_joint_efforts (6),
184
+ psm_cutter_gripper_state (2),
185
+ retraction_end_effector_pose (7),
186
+ cutter_end_effector_pose (7)
187
+ ]
188
+ ```
189
+
190
+ - `observation.state` is a 54-D float32 vector
191
+ - Includes joint positions, velocities, efforts, gripper states, and EE poses
192
+
193
+ ---
194
+
195
+ ## ⏱️ Data Synchronization Approach
196
+
197
+ All robot state signals, action commands, and stereo endoscopic video streams are synchronized using a shared system clock during data collection.
198
+
199
+ - Robot states and actions are recorded at the control frequency.
200
+ - Stereo endoscopic videos are captured at **30 FPS**.
201
+ - During dataset export, all modalities are aligned by timestamp and stored per frame in parquet format.
202
+
203
+ This ensures consistent temporal correspondence between visual observations and robot kinematics across failure-case episodes.
204
+
205
+ ---
206
+
207
+ ## 👥 Attribution & Contact
208
+
209
+ | | |
210
+ | :--- | :--- |
211
+ | **Dataset Lead** | Changwei Chen, Yinuo Yang, Xiao Liang, Michael Yip |
212
+ | **Institution** | Department of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA 92093, USA |
213
+ | **Contact Email** | {chc165, yiy124 ,x5liang, yip}@ucsd.edu |
214
+ | **Citation (BibTeX)** | @misc{ucsd_openh_phantom_2026, author = {Chen, Changwei and Yang, Yinuo and Liang, Xiao and Yip, Michael}, title = {UC San Diego Phantom Surgical Robotics Dataset (Open-H Embodiment)}, year = {2026}, publisher = {Open-H Embodiment}, note = {Dataset will be released via Open-H Embodiment; link/DOI forthcoming. Contact: chc165@ucsd.edu}
215
+ } |
Ultrasound/balgrist/sonogym_open_h_us_guidance_l1/README.md ADDED
@@ -0,0 +1,231 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # SonoGym Probe Manipulation Lerobot Dataset_1 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Synthetic ultrasound probe manipulation to see L1 vertebra.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 1024 trajectories of expert policies to move the probe to be above the target vertebra.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[1024]` |
24
+ | **Total Hours** | `[]` |
25
+ | **Data Type** | `[ ] Clinical` `[] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Navigate ultrasound prove to find a specific anatomy
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [x] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify: `[]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[x] N/A` |
64
+ | **Collection Period** | From `[2025-03]` to `[2026-01]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from various different initial positions. We scan multiple bone structures including vertebra L1-L5.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ *Kuka med14*
103
+
104
+
105
+ ### Sensors & Cameras
106
+
107
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
108
+
109
+ | Type | Model/Details |
110
+ | :--- | :--- |
111
+ | **Primary Camera** | `[None]` |
112
+ | **Room/3rd Person Camera** | `[None]` |
113
+ | **Force/Torque Sensor** | `[None]` |
114
+ | **Medical Imager** | `[e.g., Synthetic ultrasound by GAN, B-Mode]` |
115
+ | **Other** | `[Specify]` |
116
+
117
+ ---
118
+
119
+ ## 🎯 Action & State Space Representation
120
+
121
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
122
+
123
+ ### Action Space Representation
124
+
125
+ **Primary Action Representation:**
126
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
127
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
128
+ - [ ] **Joint Space** (direct joint angle commands)
129
+ - [ ] **Other** (Please specify: `[Your Representation]`)
130
+
131
+ **Orientation Representation:**
132
+ - [x] **Quaternions** (x, y, z, w)
133
+ - [ ] **Euler Angles** (roll, pitch, yaw)
134
+ - [ ] **Axis-Angle** (rotation vector)
135
+ - [ ] **Rotation Matrix** (3x3 matrix)
136
+ - [ ] **Other** (Please specify: `None`)
137
+
138
+ **Reference Frame:**
139
+ - [ ] **Robot Base Frame**
140
+ - [x] **Tool/End-Effector Frame**
141
+ - [ ] **World/Global Frame**
142
+ - [ ] **Camera Frame**
143
+ - [ ] **Other** (Please specify: `[Your Frame]`)
144
+
145
+ **Action Dimensions:**
146
+ *List the action space dimensions and their meanings.*
147
+ ```
148
+ action: [x, y, z, qw, qx, qy, qz]
149
+ - x, y, z: relative position in ultrasound image frame (meters) to next pose.
150
+ - qw, qx, qy, qz: quaternion rotation to the next frame
151
+ - Note that this 3D motion is along the surface of the training patient model. This may not align with the testing case.
152
+ ```
153
+
154
+
155
+ **Example:**
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [ ] **Gripper State** (position, force, etc.)
171
+ - [ ] **Other** (Please specify: `[Your State Info]`)
172
+
173
+ **State Dimensions:**
174
+ *List the state space dimensions and their meanings.*
175
+
176
+ ```
177
+ observation.state.ee_state: [x, y, z, qw, qx, qy, qz]
178
+ - x, y, z: Absolute position in base frame (meters)
179
+ - qw, qx, qy, qz: quaternion in base frame
180
+ observation.state.joint_state: [j1, j2, j3, j4, j5, j6, j7]
181
+ - Absolute joint positions for 7-DOF arm (radians)
182
+ ```
183
+
184
+
185
+ **Example:**
186
+ ```
187
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
188
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
189
+ - gripper_pos: Current gripper opening (meters)
190
+ ```
191
+
192
+ ### 📋 Recommended Additional Representations
193
+
194
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
195
+
196
+ **Recommended Action Fields:**
197
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
198
+ ```
199
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
200
+ ```
201
+
202
+ **Recommended State Fields:**
203
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
204
+ ```
205
+ [joint_1, joint_2, ..., joint_n]
206
+ ```
207
+
208
+
209
+ ---
210
+
211
+ ## ⏱️ Data Synchronization Approach
212
+
213
+
214
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
215
+
216
+ *The synchronization is ensured automatically through simulation*.
217
+
218
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
219
+
220
+ ---
221
+
222
+ ## 👥 Attribution & Contact
223
+
224
+ *Please provide attribution for the dataset creators and a point of contact.*
225
+
226
+ | | |
227
+ | :--- | :--- |
228
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
229
+ | **Institution** | `[Balgrist University Hospital]` |
230
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
231
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/sonogym_open_h_us_guidance_l2/README.md ADDED
@@ -0,0 +1,231 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # SonoGym Probe Manipulation Lerobot Dataset_2 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Synthetic ultrasound probe manipulation to see L2 vertebra.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 1024 trajectories of expert policies to move the probe to be above the target vertebra.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[1024]` |
24
+ | **Total Hours** | `[]` |
25
+ | **Data Type** | `[ ] Clinical` `[] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Navigate ultrasound prove to find a specific anatomy
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [x] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify: `[]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[x] N/A` |
64
+ | **Collection Period** | From `[2025-03]` to `[2026-01]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from various different initial positions. We scan multiple bone structures including vertebra L1-L5.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ *Kuka med14*
103
+
104
+
105
+ ### Sensors & Cameras
106
+
107
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
108
+
109
+ | Type | Model/Details |
110
+ | :--- | :--- |
111
+ | **Primary Camera** | `[None]` |
112
+ | **Room/3rd Person Camera** | `[None]` |
113
+ | **Force/Torque Sensor** | `[None]` |
114
+ | **Medical Imager** | `[e.g., Synthetic ultrasound by GAN, B-Mode]` |
115
+ | **Other** | `[Specify]` |
116
+
117
+ ---
118
+
119
+ ## 🎯 Action & State Space Representation
120
+
121
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
122
+
123
+ ### Action Space Representation
124
+
125
+ **Primary Action Representation:**
126
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
127
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
128
+ - [ ] **Joint Space** (direct joint angle commands)
129
+ - [ ] **Other** (Please specify: `[Your Representation]`)
130
+
131
+ **Orientation Representation:**
132
+ - [x] **Quaternions** (x, y, z, w)
133
+ - [ ] **Euler Angles** (roll, pitch, yaw)
134
+ - [ ] **Axis-Angle** (rotation vector)
135
+ - [ ] **Rotation Matrix** (3x3 matrix)
136
+ - [ ] **Other** (Please specify: `None`)
137
+
138
+ **Reference Frame:**
139
+ - [ ] **Robot Base Frame**
140
+ - [x] **Tool/End-Effector Frame**
141
+ - [ ] **World/Global Frame**
142
+ - [ ] **Camera Frame**
143
+ - [ ] **Other** (Please specify: `[Your Frame]`)
144
+
145
+ **Action Dimensions:**
146
+ *List the action space dimensions and their meanings.*
147
+ ```
148
+ action: [x, y, z, qw, qx, qy, qz]
149
+ - x, y, z: relative position in ultrasound image frame (meters) to next pose.
150
+ - qw, qx, qy, qz: quaternion rotation to the next frame
151
+ - Note that this 3D motion is along the surface of the training patient model. This may not align with the testing case.
152
+ ```
153
+
154
+
155
+ **Example:**
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [ ] **Gripper State** (position, force, etc.)
171
+ - [ ] **Other** (Please specify: `[Your State Info]`)
172
+
173
+ **State Dimensions:**
174
+ *List the state space dimensions and their meanings.*
175
+
176
+ ```
177
+ observation.state.ee_state: [x, y, z, qw, qx, qy, qz]
178
+ - x, y, z: Absolute position in base frame (meters)
179
+ - qw, qx, qy, qz: quaternion in base frame
180
+ observation.state.joint_state: [j1, j2, j3, j4, j5, j6, j7]
181
+ - Absolute joint positions for 7-DOF arm (radians)
182
+ ```
183
+
184
+
185
+ **Example:**
186
+ ```
187
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
188
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
189
+ - gripper_pos: Current gripper opening (meters)
190
+ ```
191
+
192
+ ### 📋 Recommended Additional Representations
193
+
194
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
195
+
196
+ **Recommended Action Fields:**
197
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
198
+ ```
199
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
200
+ ```
201
+
202
+ **Recommended State Fields:**
203
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
204
+ ```
205
+ [joint_1, joint_2, ..., joint_n]
206
+ ```
207
+
208
+
209
+ ---
210
+
211
+ ## ⏱️ Data Synchronization Approach
212
+
213
+
214
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
215
+
216
+ *The synchronization is ensured automatically through simulation*.
217
+
218
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
219
+
220
+ ---
221
+
222
+ ## 👥 Attribution & Contact
223
+
224
+ *Please provide attribution for the dataset creators and a point of contact.*
225
+
226
+ | | |
227
+ | :--- | :--- |
228
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
229
+ | **Institution** | `[Balgrist University Hospital]` |
230
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
231
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/sonogym_open_h_us_guidance_l3/README.md ADDED
@@ -0,0 +1,231 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # SonoGym Probe Manipulation Lerobot Dataset_3 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Synthetic ultrasound probe manipulation to see L3 vertebra.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 1024 trajectories of expert policies to move the probe to be above the target vertebra.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[1024]` |
24
+ | **Total Hours** | `[]` |
25
+ | **Data Type** | `[ ] Clinical` `[] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Navigate ultrasound prove to find a specific anatomy
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [x] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify: `[]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[x] N/A` |
64
+ | **Collection Period** | From `[2025-03]` to `[2026-01]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from various different initial positions. We scan multiple bone structures including vertebra L1-L5.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ *Kuka med14*
103
+
104
+
105
+ ### Sensors & Cameras
106
+
107
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
108
+
109
+ | Type | Model/Details |
110
+ | :--- | :--- |
111
+ | **Primary Camera** | `[None]` |
112
+ | **Room/3rd Person Camera** | `[None]` |
113
+ | **Force/Torque Sensor** | `[None]` |
114
+ | **Medical Imager** | `[e.g., Synthetic ultrasound by GAN, B-Mode]` |
115
+ | **Other** | `[Specify]` |
116
+
117
+ ---
118
+
119
+ ## 🎯 Action & State Space Representation
120
+
121
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
122
+
123
+ ### Action Space Representation
124
+
125
+ **Primary Action Representation:**
126
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
127
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
128
+ - [ ] **Joint Space** (direct joint angle commands)
129
+ - [ ] **Other** (Please specify: `[Your Representation]`)
130
+
131
+ **Orientation Representation:**
132
+ - [x] **Quaternions** (x, y, z, w)
133
+ - [ ] **Euler Angles** (roll, pitch, yaw)
134
+ - [ ] **Axis-Angle** (rotation vector)
135
+ - [ ] **Rotation Matrix** (3x3 matrix)
136
+ - [ ] **Other** (Please specify: `None`)
137
+
138
+ **Reference Frame:**
139
+ - [ ] **Robot Base Frame**
140
+ - [x] **Tool/End-Effector Frame**
141
+ - [ ] **World/Global Frame**
142
+ - [ ] **Camera Frame**
143
+ - [ ] **Other** (Please specify: `[Your Frame]`)
144
+
145
+ **Action Dimensions:**
146
+ *List the action space dimensions and their meanings.*
147
+ ```
148
+ action: [x, y, z, qw, qx, qy, qz]
149
+ - x, y, z: relative position in ultrasound image frame (meters) to next pose.
150
+ - qw, qx, qy, qz: quaternion rotation to the next frame
151
+ - Note that this 3D motion is along the surface of the training patient model. This may not align with the testing case.
152
+ ```
153
+
154
+
155
+ **Example:**
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [ ] **Gripper State** (position, force, etc.)
171
+ - [ ] **Other** (Please specify: `[Your State Info]`)
172
+
173
+ **State Dimensions:**
174
+ *List the state space dimensions and their meanings.*
175
+
176
+ ```
177
+ observation.state.ee_state: [x, y, z, qw, qx, qy, qz]
178
+ - x, y, z: Absolute position in base frame (meters)
179
+ - qw, qx, qy, qz: quaternion in base frame
180
+ observation.state.joint_state: [j1, j2, j3, j4, j5, j6, j7]
181
+ - Absolute joint positions for 7-DOF arm (radians)
182
+ ```
183
+
184
+
185
+ **Example:**
186
+ ```
187
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
188
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
189
+ - gripper_pos: Current gripper opening (meters)
190
+ ```
191
+
192
+ ### 📋 Recommended Additional Representations
193
+
194
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
195
+
196
+ **Recommended Action Fields:**
197
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
198
+ ```
199
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
200
+ ```
201
+
202
+ **Recommended State Fields:**
203
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
204
+ ```
205
+ [joint_1, joint_2, ..., joint_n]
206
+ ```
207
+
208
+
209
+ ---
210
+
211
+ ## ⏱️ Data Synchronization Approach
212
+
213
+
214
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
215
+
216
+ *The synchronization is ensured automatically through simulation*.
217
+
218
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
219
+
220
+ ---
221
+
222
+ ## 👥 Attribution & Contact
223
+
224
+ *Please provide attribution for the dataset creators and a point of contact.*
225
+
226
+ | | |
227
+ | :--- | :--- |
228
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
229
+ | **Institution** | `[Balgrist University Hospital]` |
230
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
231
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/sonogym_open_h_us_guidance_l4/README.md ADDED
@@ -0,0 +1,231 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # SonoGym Probe Manipulation Lerobot Dataset_4 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Synthetic ultrasound probe manipulation to see L4 vertebra.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 1024 trajectories of expert policies to move the probe to be above the target vertebra.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[1024]` |
24
+ | **Total Hours** | `[]` |
25
+ | **Data Type** | `[ ] Clinical` `[] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Navigate ultrasound prove to find a specific anatomy
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [x] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify: `[]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[x] N/A` |
64
+ | **Collection Period** | From `[2025-03]` to `[2026-01]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from various different initial positions. We scan multiple bone structures including vertebra L1-L5.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ *Kuka med14*
103
+
104
+
105
+ ### Sensors & Cameras
106
+
107
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
108
+
109
+ | Type | Model/Details |
110
+ | :--- | :--- |
111
+ | **Primary Camera** | `[None]` |
112
+ | **Room/3rd Person Camera** | `[None]` |
113
+ | **Force/Torque Sensor** | `[None]` |
114
+ | **Medical Imager** | `[e.g., Synthetic ultrasound by GAN, B-Mode]` |
115
+ | **Other** | `[Specify]` |
116
+
117
+ ---
118
+
119
+ ## 🎯 Action & State Space Representation
120
+
121
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
122
+
123
+ ### Action Space Representation
124
+
125
+ **Primary Action Representation:**
126
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
127
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
128
+ - [ ] **Joint Space** (direct joint angle commands)
129
+ - [ ] **Other** (Please specify: `[Your Representation]`)
130
+
131
+ **Orientation Representation:**
132
+ - [x] **Quaternions** (x, y, z, w)
133
+ - [ ] **Euler Angles** (roll, pitch, yaw)
134
+ - [ ] **Axis-Angle** (rotation vector)
135
+ - [ ] **Rotation Matrix** (3x3 matrix)
136
+ - [ ] **Other** (Please specify: `None`)
137
+
138
+ **Reference Frame:**
139
+ - [ ] **Robot Base Frame**
140
+ - [x] **Tool/End-Effector Frame**
141
+ - [ ] **World/Global Frame**
142
+ - [ ] **Camera Frame**
143
+ - [ ] **Other** (Please specify: `[Your Frame]`)
144
+
145
+ **Action Dimensions:**
146
+ *List the action space dimensions and their meanings.*
147
+ ```
148
+ action: [x, y, z, qw, qx, qy, qz]
149
+ - x, y, z: relative position in ultrasound image frame (meters) to next pose.
150
+ - qw, qx, qy, qz: quaternion rotation to the next frame
151
+ - Note that this 3D motion is along the surface of the training patient model. This may not align with the testing case.
152
+ ```
153
+
154
+
155
+ **Example:**
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [ ] **Gripper State** (position, force, etc.)
171
+ - [ ] **Other** (Please specify: `[Your State Info]`)
172
+
173
+ **State Dimensions:**
174
+ *List the state space dimensions and their meanings.*
175
+
176
+ ```
177
+ observation.state.ee_state: [x, y, z, qw, qx, qy, qz]
178
+ - x, y, z: Absolute position in base frame (meters)
179
+ - qw, qx, qy, qz: quaternion in base frame
180
+ observation.state.joint_state: [j1, j2, j3, j4, j5, j6, j7]
181
+ - Absolute joint positions for 7-DOF arm (radians)
182
+ ```
183
+
184
+
185
+ **Example:**
186
+ ```
187
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
188
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
189
+ - gripper_pos: Current gripper opening (meters)
190
+ ```
191
+
192
+ ### 📋 Recommended Additional Representations
193
+
194
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
195
+
196
+ **Recommended Action Fields:**
197
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
198
+ ```
199
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
200
+ ```
201
+
202
+ **Recommended State Fields:**
203
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
204
+ ```
205
+ [joint_1, joint_2, ..., joint_n]
206
+ ```
207
+
208
+
209
+ ---
210
+
211
+ ## ⏱️ Data Synchronization Approach
212
+
213
+
214
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
215
+
216
+ *The synchronization is ensured automatically through simulation*.
217
+
218
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
219
+
220
+ ---
221
+
222
+ ## 👥 Attribution & Contact
223
+
224
+ *Please provide attribution for the dataset creators and a point of contact.*
225
+
226
+ | | |
227
+ | :--- | :--- |
228
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
229
+ | **Institution** | `[Balgrist University Hospital]` |
230
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
231
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/sonogym_open_h_us_guidance_l5/README.md ADDED
@@ -0,0 +1,231 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # SonoGym Probe Manipulation Lerobot Dataset_5 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Synthetic ultrasound probe manipulation to see L5 vertebra.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 1024 trajectories of expert policies to move the probe to be above the target vertebra.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[1024]` |
24
+ | **Total Hours** | `[]` |
25
+ | **Data Type** | `[ ] Clinical` `[] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Navigate ultrasound prove to find a specific anatomy
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [x] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [ ] **Other** (Please specify: `[]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[ ] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[x] N/A` |
64
+ | **Collection Period** | From `[2025-03]` to `[2026-01]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [ ] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from various different initial positions. We scan multiple bone structures including vertebra L1-L5.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+ *Kuka med14*
103
+
104
+
105
+ ### Sensors & Cameras
106
+
107
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
108
+
109
+ | Type | Model/Details |
110
+ | :--- | :--- |
111
+ | **Primary Camera** | `[None]` |
112
+ | **Room/3rd Person Camera** | `[None]` |
113
+ | **Force/Torque Sensor** | `[None]` |
114
+ | **Medical Imager** | `[e.g., Synthetic ultrasound by GAN, B-Mode]` |
115
+ | **Other** | `[Specify]` |
116
+
117
+ ---
118
+
119
+ ## 🎯 Action & State Space Representation
120
+
121
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
122
+
123
+ ### Action Space Representation
124
+
125
+ **Primary Action Representation:**
126
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
127
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
128
+ - [ ] **Joint Space** (direct joint angle commands)
129
+ - [ ] **Other** (Please specify: `[Your Representation]`)
130
+
131
+ **Orientation Representation:**
132
+ - [x] **Quaternions** (x, y, z, w)
133
+ - [ ] **Euler Angles** (roll, pitch, yaw)
134
+ - [ ] **Axis-Angle** (rotation vector)
135
+ - [ ] **Rotation Matrix** (3x3 matrix)
136
+ - [ ] **Other** (Please specify: `None`)
137
+
138
+ **Reference Frame:**
139
+ - [ ] **Robot Base Frame**
140
+ - [x] **Tool/End-Effector Frame**
141
+ - [ ] **World/Global Frame**
142
+ - [ ] **Camera Frame**
143
+ - [ ] **Other** (Please specify: `[Your Frame]`)
144
+
145
+ **Action Dimensions:**
146
+ *List the action space dimensions and their meanings.*
147
+ ```
148
+ action: [x, y, z, qw, qx, qy, qz]
149
+ - x, y, z: relative position in ultrasound image frame (meters) to next pose.
150
+ - qw, qx, qy, qz: quaternion rotation to the next frame
151
+ - Note that this 3D motion is along the surface of the training patient model. This may not align with the testing case.
152
+ ```
153
+
154
+
155
+ **Example:**
156
+ ```
157
+ action: [x, y, z, qx, qy, qz, qw, gripper]
158
+ - x, y, z: Absolute position in robot base frame (meters)
159
+ - qx, qy, qz, qw: Absolute orientation as quaternion
160
+ - gripper: Gripper opening angle (radians)
161
+ ```
162
+
163
+ ### State Space Representation
164
+
165
+ **State Information Included:**
166
+ - [x] **Joint Positions** (all articulated joints)
167
+ - [ ] **Joint Velocities**
168
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
169
+ - [ ] **Force/Torque Readings**
170
+ - [ ] **Gripper State** (position, force, etc.)
171
+ - [ ] **Other** (Please specify: `[Your State Info]`)
172
+
173
+ **State Dimensions:**
174
+ *List the state space dimensions and their meanings.*
175
+
176
+ ```
177
+ observation.state.ee_state: [x, y, z, qw, qx, qy, qz]
178
+ - x, y, z: Absolute position in base frame (meters)
179
+ - qw, qx, qy, qz: quaternion in base frame
180
+ observation.state.joint_state: [j1, j2, j3, j4, j5, j6, j7]
181
+ - Absolute joint positions for 7-DOF arm (radians)
182
+ ```
183
+
184
+
185
+ **Example:**
186
+ ```
187
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
188
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
189
+ - gripper_pos: Current gripper opening (meters)
190
+ ```
191
+
192
+ ### 📋 Recommended Additional Representations
193
+
194
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
195
+
196
+ **Recommended Action Fields:**
197
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
198
+ ```
199
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
200
+ ```
201
+
202
+ **Recommended State Fields:**
203
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
204
+ ```
205
+ [joint_1, joint_2, ..., joint_n]
206
+ ```
207
+
208
+
209
+ ---
210
+
211
+ ## ⏱️ Data Synchronization Approach
212
+
213
+
214
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
215
+
216
+ *The synchronization is ensured automatically through simulation*.
217
+
218
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
219
+
220
+ ---
221
+
222
+ ## 👥 Attribution & Contact
223
+
224
+ *Please provide attribution for the dataset creators and a point of contact.*
225
+
226
+ | | |
227
+ | :--- | :--- |
228
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
229
+ | **Institution** | `[Balgrist University Hospital]` |
230
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
231
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full/README.md ADDED
@@ -0,0 +1,226 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Ultrabones100k Cadaveric Ultrasound Lerobot Dataset_1 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Freehand tracked ultrasound scan from an expert surgeon (first part ), with 14 cadavers and 5-12 different scans for each of them. Both Tibia and Fibula are scanned for different cadavers.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 60 trajectories of expert surgeons using the ultrasound probe to scan bones. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[60]` |
24
+ | **Total Hours** | `[1.2]` |
25
+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [ ] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [x] **Other** (Please specify: `extrinsic xyz euler angle`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, euler_x, euler_y, euler_z]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - euler_x, euler_y, euler_z: extrinsic xyz euler angle in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [ ] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state: [x, y, z, euler_x, euler_y, euler_z]
175
+ - x, y, z: Absolute position in world frame (meters)
176
+ - euler_x, euler_y, euler_z: extrinsic xyz euler angle XYZ euler angle in world frame
177
+ ```
178
+
179
+
180
+ **Example:**
181
+ ```
182
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
183
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
184
+ - gripper_pos: Current gripper opening (meters)
185
+ ```
186
+
187
+ ### 📋 Recommended Additional Representations
188
+
189
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
190
+
191
+ **Recommended Action Fields:**
192
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
193
+ ```
194
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
195
+ ```
196
+
197
+ **Recommended State Fields:**
198
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
199
+ ```
200
+ [joint_1, joint_2, ..., joint_n]
201
+ ```
202
+
203
+
204
+ ---
205
+
206
+ ## ⏱️ Data Synchronization Approach
207
+
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
212
+
213
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
214
+
215
+ ---
216
+
217
+ ## 👥 Attribution & Contact
218
+
219
+ *Please provide attribution for the dataset creators and a point of contact.*
220
+
221
+ | | |
222
+ | :--- | :--- |
223
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
224
+ | **Institution** | `[Balgrist University Hospital]` |
225
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
226
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full_2/README.md ADDED
@@ -0,0 +1,226 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Ultrabones100k Cadaveric Ultrasound Lerobot Dataset_2 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Freehand tracked ultrasound scan from an expert surgeon (second part), with 14 cadavers and 5-12 different scans for each of them. Both Tibia and Fibula are scanned for different cadavers.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 12 trajectories of expert surgeons using the ultrasound probe to scan bones, with different ultrasound image shape to the first one. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[12]` |
24
+ | **Total Hours** | `[0.24]` |
25
+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [ ] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [x] **Other** (Please specify: `extrinsic XYZ euler angle`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, euler_x, euler_y, euler_z]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - euler_x, euler_y, euler_z: extrinsic XYZ euler angle in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [ ] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state: [x, y, z, euler_x, euler_y, euler_z]
175
+ - x, y, z: Absolute position in world frame (meters)
176
+ - euler_x, euler_y, euler_z: extrinsic XYZ euler angle in world frame
177
+ ```
178
+
179
+
180
+ **Example:**
181
+ ```
182
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
183
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
184
+ - gripper_pos: Current gripper opening (meters)
185
+ ```
186
+
187
+ ### 📋 Recommended Additional Representations
188
+
189
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
190
+
191
+ **Recommended Action Fields:**
192
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
193
+ ```
194
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
195
+ ```
196
+
197
+ **Recommended State Fields:**
198
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
199
+ ```
200
+ [joint_1, joint_2, ..., joint_n]
201
+ ```
202
+
203
+
204
+ ---
205
+
206
+ ## ⏱️ Data Synchronization Approach
207
+
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
212
+
213
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
214
+
215
+ ---
216
+
217
+ ## 👥 Attribution & Contact
218
+
219
+ *Please provide attribution for the dataset creators and a point of contact.*
220
+
221
+ | | |
222
+ | :--- | :--- |
223
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
224
+ | **Institution** | `[Balgrist University Hospital]` |
225
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
226
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full_2_synthetic_robot_2/README.md ADDED
@@ -0,0 +1,228 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Ultrabones100k Cadaveric Ultrasound Dataset with synthetic robot state_2- README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Freehand tracked ultrasound scan from an expert surgeon, augmented with synthetic robot state with randomized base positions and ee to us extrinsics.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 12 trajectories of expert surgeons using the ultrasound probe to scan bones, with different ultrasound image shape to the second one. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[12]` |
24
+ | **Total Hours** | `[0.24]` |
25
+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *Kuka med14*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [x] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [ ] **Other** (Please specify: `None`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, qw, qx, qy, qz]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - qw, qx, qy, qz: quaternion in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [x] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state.us_pose: [x, y, z, qw, qx, qy, qz]
175
+ - x, y, z: Absolute position in robot base frame (meters)
176
+ - qw, qx, qy, qz: quaternion in robot base frame
177
+ observation.state.joint_pos: [j1, j2, ..., j7]
178
+ - j1-j7: joint positions
179
+ ```
180
+
181
+
182
+ **Example:**
183
+ ```
184
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
185
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
186
+ - gripper_pos: Current gripper opening (meters)
187
+ ```
188
+
189
+ ### 📋 Recommended Additional Representations
190
+
191
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
192
+
193
+ **Recommended Action Fields:**
194
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
195
+ ```
196
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
197
+ ```
198
+
199
+ **Recommended State Fields:**
200
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
201
+ ```
202
+ [joint_1, joint_2, ..., joint_n]
203
+ ```
204
+
205
+
206
+ ---
207
+
208
+ ## ⏱️ Data Synchronization Approach
209
+
210
+
211
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
212
+
213
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
214
+
215
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
216
+
217
+ ---
218
+
219
+ ## 👥 Attribution & Contact
220
+
221
+ *Please provide attribution for the dataset creators and a point of contact.*
222
+
223
+ | | |
224
+ | :--- | :--- |
225
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
226
+ | **Institution** | `[Balgrist University Hospital]` |
227
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
228
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full_3/README.md ADDED
@@ -0,0 +1,226 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Ultrabones100k Cadaveric Ultrasound Lerobot Dataset_3 - README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Freehand tracked ultrasound scan from an expert surgeon (third part), with 14 cadavers and 5-12 different scans for each of them. Both Tibia and Fibula are scanned for different cadavers.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 18 trajectories of expert surgeons using the ultrasound probe to scan bones, with different ultrasound image shape to the second one. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[18]` |
24
+ | **Total Hours** | `[0.36]` |
25
+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[ ] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *List the primary robot(s) used.*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [ ] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [x] **Other** (Please specify: `extrinsic XYZ euler angle`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, euler_x, euler_y, euler_z]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - euler_x, euler_y, euler_z: extrinsic XYZ euler angle in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [ ] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state: [x, y, z, euler_x, euler_y, euler_z]
175
+ - x, y, z: Absolute position in world frame (meters)
176
+ - euler_x, euler_y, euler_z: extrinsic XYZ euler angle in world frame
177
+ ```
178
+
179
+
180
+ **Example:**
181
+ ```
182
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
183
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
184
+ - gripper_pos: Current gripper opening (meters)
185
+ ```
186
+
187
+ ### 📋 Recommended Additional Representations
188
+
189
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
190
+
191
+ **Recommended Action Fields:**
192
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
193
+ ```
194
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
195
+ ```
196
+
197
+ **Recommended State Fields:**
198
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
199
+ ```
200
+ [joint_1, joint_2, ..., joint_n]
201
+ ```
202
+
203
+
204
+ ---
205
+
206
+ ## ⏱️ Data Synchronization Approach
207
+
208
+
209
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
210
+
211
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
212
+
213
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
214
+
215
+ ---
216
+
217
+ ## 👥 Attribution & Contact
218
+
219
+ *Please provide attribution for the dataset creators and a point of contact.*
220
+
221
+ | | |
222
+ | :--- | :--- |
223
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
224
+ | **Institution** | `[Balgrist University Hospital]` |
225
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
226
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full_3_synthetic_robot_2/README.md ADDED
@@ -0,0 +1,228 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <!--
2
+ Open-H Embodiment Dataset README Template (v1.0)
3
+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
4
+ This file helps others understand the context and details of your contribution.
5
+ -->
6
+
7
+ # Ultrabones100k Cadaveric Ultrasound Dataset with synthetic robot state_3- README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
12
+
13
+ *Freehand tracked ultrasound scan from an expert surgeon, augmented with synthetic robot state with randomized base positions and ee to us extrinsics.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
18
+
19
+ *This dataset contains 18 trajectories of expert surgeons using the ultrasound probe to scan bones, with different ultrasound image shape to the second one. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
20
+
21
+ | | |
22
+ | :--- | :--- |
23
+ | **Total Trajectories** | `[18]` |
24
+ | **Total Hours** | `[0.36]` |
25
+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
26
+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
32
+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
54
+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
56
+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
63
+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
69
+
70
+ - [ ] **Yes**
71
+ - [x] **No**
72
+
73
+ **If yes, please briefly describe the recovery process:**
74
+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
78
+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
81
+ - [x] **Camera Position / Angle**
82
+ - [ ] **Lighting Conditions**
83
+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
85
+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *Kuka med14*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [x] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [ ] **Other** (Please specify: `None`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, qw, qx, qy, qz]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - qw, qx, qy, qz: quaternion in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [x] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state.us_pose: [x, y, z, qw, qx, qy, qz]
175
+ - x, y, z: Absolute position in robot base frame (meters)
176
+ - qw, qx, qy, qz: quaternion in robot base frame
177
+ observation.state.joint_pos: [j1, j2, ..., j7]
178
+ - j1-j7: joint positions
179
+ ```
180
+
181
+
182
+ **Example:**
183
+ ```
184
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
185
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
186
+ - gripper_pos: Current gripper opening (meters)
187
+ ```
188
+
189
+ ### 📋 Recommended Additional Representations
190
+
191
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
192
+
193
+ **Recommended Action Fields:**
194
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
195
+ ```
196
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
197
+ ```
198
+
199
+ **Recommended State Fields:**
200
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
201
+ ```
202
+ [joint_1, joint_2, ..., joint_n]
203
+ ```
204
+
205
+
206
+ ---
207
+
208
+ ## ⏱️ Data Synchronization Approach
209
+
210
+
211
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
212
+
213
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
214
+
215
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
216
+
217
+ ---
218
+
219
+ ## 👥 Attribution & Contact
220
+
221
+ *Please provide attribution for the dataset creators and a point of contact.*
222
+
223
+ | | |
224
+ | :--- | :--- |
225
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
226
+ | **Institution** | `[Balgrist University Hospital]` |
227
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
228
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |
Ultrasound/balgrist/ultrabones_lerobot_dataset_full_synthetic_robot/README.md ADDED
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1
+ <!--
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+ Open-H Embodiment Dataset README Template (v1.0)
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+ Please fill out this template and include it in the ./metadata directory of your LeRobot dataset.
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+ This file helps others understand the context and details of your contribution.
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+ -->
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+
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+ # Ultrabones100k Cadaveric Ultrasound Dataset with synthetic robot state- README
8
+
9
+ ---
10
+
11
+ ## 📋 At a Glance
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+
13
+ *Freehand tracked ultrasound scan from an expert surgeon, augmented with synthetic robot state with randomized base positions and ee to us extrinsics.*
14
+
15
+ ---
16
+
17
+ ## 📖 Dataset Overview
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+
19
+ *This dataset contains 60 trajectories of expert surgeons using the ultrasound probe to scan bones, with different ultrasound image shape to the second one. The state is the current pose. Observation is the ultrasound image. The action is extracted as the delta cartesion pose to 1 second later.*
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+
21
+ | | |
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+ | :--- | :--- |
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+ | **Total Trajectories** | `[60]` |
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+ | **Total Hours** | `[1.2]` |
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+ | **Data Type** | `[ ] Clinical` `[x] Ex-Vivo` `[ ] Table-Top Phantom` `[x] Digital Simulation` `[ ] Physical Simulation` `[ ] Other (If checked, update "Other")` |
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+ | **License** | CC BY 4.0 |
27
+ | **Version** | `[e.g., 1.0]` |
28
+
29
+ ---
30
+
31
+ ## 🎯 Tasks & Domain
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+
33
+ ### Domain
34
+
35
+ *Select the primary domain for this dataset.*
36
+
37
+ - [ ] **Surgical Robotics**
38
+ - [x] **Ultrasound Robotics**
39
+ - [ ] **Other Healthcare Robotics** (Please specify: `[Your Domain]`)
40
+
41
+ ### Demonstrated Skills
42
+
43
+ - Ultrasound scanning for orthopedics / reconstruction (fibula and tibia)
44
+
45
+ ---
46
+
47
+ ## 🔬 Data Collection Details
48
+
49
+ ### Collection Method
50
+
51
+ *How was the data collected?*
52
+
53
+ - [ ] **Human Teleoperation**
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+ - [ ] **Programmatic/State-Machine**
55
+ - [ ] **AI Policy / Autonomous**
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+ - [x] **Other** (Please specify: `[Expert freehand]`)
57
+
58
+ ### Operator Details
59
+
60
+ | | Description |
61
+ | :--- | :--- |
62
+ | **Operator Count** | `[1]` |
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+ | **Operator Skill Level** | `[x] Expert (e.g., Surgeon, Sonographer)` <br> `[ ] Intermediate (e.g., Trained Researcher)` <br> `[ ] Novice (e.g., ML Researcher with minimal experience)` <br> `[ ] N/A` |
64
+ | **Collection Period** | From `[2024-01]` to `[2024-06]` |
65
+
66
+ ### Recovery Demonstrations
67
+
68
+ *Does this dataset include examples of recovering from failure?*
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+
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+ - [ ] **Yes**
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+ - [x] **No**
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+
73
+ **If yes, please briefly describe the recovery process:**
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+
75
+ ---
76
+
77
+ ## 💡 Diversity Dimensions
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+
79
+ *Check all dimensions that were intentionally varied during data collection.*
80
+
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+ - [x] **Camera Position / Angle**
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+ - [ ] **Lighting Conditions**
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+ - [x] **Target Object** (e.g., different phantom models, suture types)
84
+ - [x] **Spatial Layout** (e.g., placing the target suture needle in various locations)
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+ - [ ] **Robot Embodiment** (if multiple robots were used)
86
+ - [x] **Task Execution** (e.g., different techniques for the same task)
87
+ - [ ] **Background / Scene**
88
+ - [ ] **Other** (Please specify: `[Your Dimension]`)
89
+
90
+ *If you checked any of the above please briefly elaborate below.*
91
+
92
+ We start the ultrasound scan from different initial positions. We scan multiple bone structures including fibla and tibia. We scan 14 different cadavers with 5-12 various recordings for each of them.
93
+
94
+ ---
95
+
96
+ ## 🛠️ Equipment & Setup
97
+
98
+ ### Robotic Platform(s)
99
+
100
+ *Kuka med14*
101
+
102
+
103
+ ### Sensors & Cameras
104
+
105
+ *List the sensors and cameras used. Specify model names where possible. (Add and remove rows as needed)*
106
+
107
+ | Type | Model/Details |
108
+ | :--- | :--- |
109
+ | **Primary Camera** | `[None]` |
110
+ | **Room/3rd Person Camera** | `[None]` |
111
+ | **Force/Torque Sensor** | `[None]` |
112
+ | **Medical Imager** | `[e.g., SuperSonic Imagine SL18-5 Ultrasound, B-Mode]` |
113
+ | **Other** | `[Specify]` |
114
+
115
+ ---
116
+
117
+ ## 🎯 Action & State Space Representation
118
+
119
+ *Describe how actions and robot states are represented in your dataset. This is crucial for understanding data compatibility and enabling effective policy learning.*
120
+
121
+ ### Action Space Representation
122
+
123
+ **Primary Action Representation:**
124
+ - [ ] **Absolute Cartesian** (position/orientation relative to robot base)
125
+ - [x] **Relative Cartesian** (delta position/orientation from current pose)
126
+ - [ ] **Joint Space** (direct joint angle commands)
127
+ - [ ] **Other** (Please specify: `[Your Representation]`)
128
+
129
+ **Orientation Representation:**
130
+ - [x] **Quaternions** (x, y, z, w)
131
+ - [ ] **Euler Angles** (roll, pitch, yaw)
132
+ - [ ] **Axis-Angle** (rotation vector)
133
+ - [ ] **Rotation Matrix** (3x3 matrix)
134
+ - [ ] **Other** (Please specify: `None`)
135
+
136
+ **Reference Frame:**
137
+ - [ ] **Robot Base Frame**
138
+ - [x] **Tool/End-Effector Frame**
139
+ - [ ] **World/Global Frame**
140
+ - [ ] **Camera Frame**
141
+ - [ ] **Other** (Please specify: `[Your Frame]`)
142
+
143
+ **Action Dimensions:**
144
+ *List the action space dimensions and their meanings.*
145
+ ```
146
+ action: [x, y, z, qw, qx, qy, qz]
147
+ - x, y, z: relative position in ultrasound image frame (meters) to 1 sec later
148
+ - qw, qx, qy, qz: quaternion in image frame to 1 sec later
149
+ ```
150
+
151
+
152
+ **Example:**
153
+ ```
154
+ action: [x, y, z, qx, qy, qz, qw, gripper]
155
+ - x, y, z: Absolute position in robot base frame (meters)
156
+ - qx, qy, qz, qw: Absolute orientation as quaternion
157
+ - gripper: Gripper opening angle (radians)
158
+ ```
159
+
160
+ ### State Space Representation
161
+
162
+ **State Information Included:**
163
+ - [x] **Joint Positions** (all articulated joints)
164
+ - [ ] **Joint Velocities**
165
+ - [x] **End-Effector Pose** (Cartesian position/orientation)
166
+ - [ ] **Force/Torque Readings**
167
+ - [ ] **Gripper State** (position, force, etc.)
168
+ - [ ] **Other** (Please specify: `[Your State Info]`)
169
+
170
+ **State Dimensions:**
171
+ *List the state space dimensions and their meanings.*
172
+
173
+ ```
174
+ observation.state.us_pose: [x, y, z, qw, qx, qy, qz]
175
+ - x, y, z: Absolute position in robot base frame (meters)
176
+ - qw, qx, qy, qz: quaternion in robot base frame
177
+ observation.state.joint_pos: [j1, j2, ..., j7]
178
+ - j1-j7: joint positions
179
+ ```
180
+
181
+
182
+ **Example:**
183
+ ```
184
+ observation.state: [j1, j2, j3, j4, j5, j6, j7, gripper_pos]
185
+ - j1-j7: Absolute joint positions for 7-DOF arm (radians)
186
+ - gripper_pos: Current gripper opening (meters)
187
+ ```
188
+
189
+ ### 📋 Recommended Additional Representations
190
+
191
+ *Even if not your primary action/state representation, we strongly encourage including these standardized formats for maximum compatibility:*
192
+
193
+ **Recommended Action Fields:**
194
+ - **`action.cartesian_absolute`**: Absolute Cartesian pose with absolute quaternions
195
+ ```
196
+ [x, y, z, qx, qy, qz, qw, gripper_angle]
197
+ ```
198
+
199
+ **Recommended State Fields:**
200
+ - **`observation.state.joint_positions`**: Absolute positions for all articulated joints
201
+ ```
202
+ [joint_1, joint_2, ..., joint_n]
203
+ ```
204
+
205
+
206
+ ---
207
+
208
+ ## ⏱️ Data Synchronization Approach
209
+
210
+
211
+ *Describe how you achieved proper data synchronization across different sensors, cameras, and robotic systems during data collection. This is crucial for ensuring temporal alignment of all modalities in your dataset.*
212
+
213
+ *The synchronization is part of of calibration procedure, which is detailed in [Ultrabones100k](https://arxiv.org/abs/2502.03783)*.
214
+
215
+ **Example:** *We collect joint kinematics from our Franka Research 3 and RGB-D frames from Intel RealSense D435 cameras, all running in ROS 2 Galactic on the same workstation clocked with ROS Time. Both drivers stamp their outgoing messages’ header.stamp fields with the shared system clock, and we record /joint_states, /camera/*/image_raw, and /camera/*/camera_info in a single rosbag2 session. During export to LeRobot, each data point’s ROS header.stamp is written verbatim into the timestamp attribute. Offline checks show inter-sensor skew stays below ±2 ms across a 2-minute capture.*
216
+
217
+ ---
218
+
219
+ ## 👥 Attribution & Contact
220
+
221
+ *Please provide attribution for the dataset creators and a point of contact.*
222
+
223
+ | | |
224
+ | :--- | :--- |
225
+ | **Dataset Lead** | `[Yunke Ao, Luohong Wu]` |
226
+ | **Institution** | `[Balgrist University Hospital]` |
227
+ | **Contact Email** | `[yunke.ao@balgrist.ch, luohong.wu@balgrist.ch, ...]` |
228
+ | **Citation (BibTeX)** | <pre><code>@misc{[Ultrabones100k_lerobot_2026],<br> author = {[Yunke Ao, Luohong Wu, Philipp Fuernstahl]},<br> title = {[Ultrabones100k Lerobot Dataset]},<br> year = {2026},<br> publisher = {Open-H-Embodiment},<br> note = {https://hrpp.research.virginia.edu/teams/irb-sbs/researcher-guide-irb-sbs/identifiers}<br>}</code></pre> |