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Instruct:
Identify the main category of Biorxiv papers based on the titles
Query:
Reliability and Stability Challenges in ABCD Task fMRI Data | neuroscience |
Instruct:
Identify the main category of Biorxiv papers based on the titles and abstracts
Query:
RACK1 associates with RNA-binding proteins Vigilin and SERBP1 to control dengue virus replication
Dengue virus (DENV), a re-emerging virus transmitted by Aedes mosquitoes, causes severe pathogenesis in humans. No effective ... | microbiology |
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Query:
Fast and memory-efficient mapping of short bisulfite sequencing reads using a two-letter alphabet | bioinformatics |
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Query:
The effect of acute oral galactose administration on the redox system of the rat small intestine
Galactose is a ubiquitous monosaccharide with important yet incompletely understood nutritive and physiological roles. Chronic... | biochemistry |
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Query:
Distinct cDC subsets co-operate in CD40 agonist response while suppressive microenvironments and lack of antigens subvert efficacy | cancer biology |
Instruct:
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Query:
The response of Oligo-Miocene bivalve fauna of the Kutch Basin (western India) to regional changes in tectonics and climate
Tectonic changes has influenced the evolution of the marine community by changing the land and seaw... | paleontology |
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Query:
Homogeneous inhibition is optimal for the phase precession of place cells in the CA1 field | neuroscience |
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Query:
Neuron particles capture network topology and behavior from single units
While networks of neurons, glia and vascular systems enable and support brain functions, to date, mathematical tools to decode network dynamics and st... | neuroscience |
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Query:
Rapid tissue-specific screening of Wolbachia, Cardinium and Rickettsia in Flies (Diptera: Sepsidae; Drosophilidae) | evolutionary biology |
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Query:
Extraversion is associated with lower brain amyloid deposition in cognitively normal older adults.
Emerging evidence suggests that some personality traits may link to the vulnerability to or protection for Alzheimers diseas... | neuroscience |
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Query:
A cryo-ET survey of intracellular compartments within mammalian axons | cell biology |
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Query:
A Hypoxia Sensitive to Hypoxia Resistant Transformation in Long-Lived Germline Mutants
Signals from the germline play a significant role in determining longevity in numerous animal models. In C. elegans, ablation of the ger... | genetics |
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Query:
IL-21 signaling promotes the establishment of KSHV infection in human tonsil lymphocytes by increasing early targeting of plasma cells | microbiology |
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Query:
Gigapixel behavioral and neural activity imaging with a novel multi-camera array microscope
The dynamics of living organisms are organized across many spatial scales. However, current cost-effective imaging systems can meas... | bioengineering |
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Query:
Disrupted social memory ensembles in the ventral hippocampus underlie social amnesia in autism-associated Shank3 mutant mice | neuroscience |
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Query:
A systems biology approach to elucidate the post-translational regulome of coronary artery disease
Coronary Artery Disease is a major killer in India and world at large but the molecular regulators which modulate clinically... | synthetic biology |
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Query:
Granulocyte Colony Stimulating Factor causes cerebellar deficits and anxiety in a mouse model of CSF-1 receptor-related leukoencephalopathy | neuroscience |
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Query:
Rare genera differentiate urban green space soil bacterial communities in three cities across the world
Vegetation complexity is potentially important for urban green space designs aimed at fostering microbial biodiversity ... | ecology |
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Query:
A massively parallel reporter assay reveals focused and broadly encoded RNA localization signals in neurons | genomics |
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Query:
Mechanosensitive Ion Channel Piezo1 Regulates Myocyte Fusion during Skeletal Myogenesis
Mechanical stimuli such as stretch and resistance training are essential to regulate growth and function of skeletal muscle. However, t... | molecular biology |
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Query:
A non-adaptive demographic mechanism for genome expansion in Streptomyces | microbiology |
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Query:
Large herbivore impact on plant biomass along multiple resource gradients in the Serengeti
Herbivores form an important link in the transfer of energy within a food web and are strongly influenced by bottom-up trophic casca... | ecology |
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Query:
Airborne environmental DNA for terrestrial vertebrate community monitoring | molecular biology |
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Query:
The formation of the bacterial RNA polymerase-promoter open complex involves a branched pathway
The expression of most bacterial genes commences with the binding of RNA polymerase (RNAP)-{sigma}70 holoenzyme to the promoter... | biochemistry |
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Query:
Computational and experimental studies of the breathing motion of a protein loop: implications in PfAMA1-PfRON2 late-stage binding event | biochemistry |
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Query:
An additional area of apple domestication with crop-wild gene flow, and also cultivation of the local wild apple, in the Caucasus
Anthropogenic and natural divergence processes remain poorly studied in crop-wild fruit tree ... | evolutionary biology |
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Query:
Glaucoma and Alzheimer: Neurodegenerative disorders show an adrenergic dysbalance | neuroscience |
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Query:
Diverse B-cell specific transcriptional contexts of the BCL2 oncogene in mouse models impacts pre-malignant development
Follicular lymphoma (FL) is the most common indolent form of non-Hodgkin lymphoma arising from malignan... | immunology |
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Query:
Anatomical and Functional Gradients Shape Dynamic Functional Connectivity in the Human Brain | neuroscience |
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Query:
Efficacy of double-stranded RNA for the large-scale control and prevention of sacbrood virus in Apis cerana (Hymenoptera: Apidae) apiaries
Sacbrood virus (SBV) infection in Apis cerana has caused tremendous damage in India,... | microbiology |
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Query:
DeepBacs: Bacterial image analysis using open-source deep learning approaches | microbiology |
Instruct:
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Query:
A Humanized Antibody against LRG1 that Inhibits Angiogenesis and Reduces Retinal Vascular Leakage
Pathological angiogenesis contributes to morbidity in a number of diseases including cancer, diabetic retinopathy and the neo... | pathology |
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Query:
Interaction between BID and VDAC1 is required for mitochondrial demise and cell death in neurons | molecular biology |
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Query:
Direct Reprogramming of Non-limb Fibroblasts toCells with Properties of Limb Progenitors
The early limb bud consists of mesenchymal progenitors (limb progenitors) derived from the lateral plate mesoderm (LPM) that produce m... | developmental biology |
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Query:
Modelling eDNA transport in river networks reveals highly resolved spatio-temporal patterns of freshwater biodiversity | ecology |
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Query:
Obsessive Compulsive Disorder and Response Inhibition: Meta-analysis of the Stop-Signal Task
This systematic review and meta-analysis updates evidence pertaining to deficient response inhibition in obsessive-compulsive diso... | pathology |
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Query:
Human visual gamma for color stimuli: When LGN drive is equalized, red is not special | neuroscience |
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Query:
Xenogeneic Skin Transplantation Promotes Angiogenesis and Tissue Regeneration Through Vitamin D-Activated Trem2+ Macrophages
Skin allo- and xenotransplantation are the standard treatment for major burns when donor sites for... | immunology |
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Query:
The Genetics and Evolution of Eye Color in Domestic Pigeons (Columba livia) | genetics |
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Query:
Taxonomic Monograph of Saxicolella (Podostemaceae), African waterfall plants highly threatened by Hydro-Electric projects, with five new species.
The genus Saxicolella Engl. (Podostemaceae) are African rheophytes, restricte... | plant biology |
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Query:
Life without mismatch repair | genomics |
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Query:
MEK inhibition enhances presentation of targetable MHC-I tumor antigens in mutant melanomas
Combining multiple therapeutic strategies in NRAS/BRAF mutant melanoma - namely MEK/BRAF kinase inhibitors, immune checkpoint inhib... | cancer biology |
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Query:
recount3: summaries and queries for large-scale RNA-seq expression and splicing | genomics |
Instruct:
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Query:
Integration of brief light flashes varying in intensity and duration by the human circadian system
The melanopsin-containing intrinsically photosensitive retinal ganglion cells (ipRGCs) are characterised by a delayed off-ti... | neuroscience |
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Query:
Post-stroke administration of the p75 neurotrophin receptor modulator, LM11A-31, attenuates chronic changes in brain metabolism, increases neurotransmitter levels, and improves recovery | neuroscience |
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Query:
Domestication and lowland adaptation of coastal preceramic maize from Paredones, Peru
Archaeological cobs from Paredones and Huaca Prieta (Peru) are phenotypically indistinguishable from modern maize. This contrasts with th... | plant biology |
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Query:
Identifying Meta-QTLs for Stay-Green in Sorghum | plant biology |
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Query:
Probing the rules of cell coordination in live tissues by interpretable machine learning based on graph neural networks
Robustness in developing and homeostatic tissues is supported by various types of spatiotemporal cell-t... | cell biology |
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Query:
Predictive feedback, early sensory representations and fast responses to predicted stimuli depend on NMDA receptors | neuroscience |
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Query:
Active feature selection discovers minimal gene sets for classifying cell types and disease states with single-cell mRNA-seq data
Sequencing costs currently prohibit the application of single-cell mRNA-seq to many biologica... | bioinformatics |
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Query:
Effect of Geobacter metallireducens nanowire on electron transfer efficiency in MFC | microbiology |
Instruct:
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Query:
Structural insights into a novel family of integral membrane siderophore reductases
Gram-negative bacteria take up the essential ion Fe3+ as ferric-siderophore complexes through their outer membrane using TonB-dependent tra... | biochemistry |
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Query:
The evolution of regulatory elements in the emerging promoter variant strains of HIV-1 | microbiology |
Instruct:
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Query:
Modelling the spatiotemporal spread of beneficial alleles using ancient genomes
Ancient genome sequencing technologies now provide the opportunity to study natural selection in unprecedented detail. Rather than making infer... | evolutionary biology |
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Query:
Plant-associate interactions and diversification across trophic levels | evolutionary biology |
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Query:
WWP1 deficiency protects from cardiac remodeling induced by simulated microgravity
Cardiac muscle is extremely sensitive to changes in loading conditions, the microgravity during space flight can cause cardiac remodeling an... | physiology |
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Query:
Existence of log-phase Escherichia coli persisters and lasting memory of a starvation pulse | microbiology |
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Query:
A molecular brake that modulates spliceosome pausing at detained introns contributes to neurodegeneration
Emerging evidence suggests that intron-detaining transcripts (IDTs) are a nucleus-detained and polyadenylated mRNA po... | cell biology |
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Query:
An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome | genomics |
Instruct:
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Query:
RNA decay defines the therapeutic response to transcriptional perturbation in cancer
Transcriptionally dysregulated cancers are sensitive to the inhibition of RNA Polymerase II (RNAPII) - driven gene expression. The therape... | cancer biology |
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Query:
Volumetric Semantic Instance Segmentation of the Plasma Membrane of HeLa Cells | cell biology |
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Query:
Co-linear chaining with overlaps and gap costs
Co-linear chaining has proven to be a powerful heuristic for finding near-optimal alignments of long DNA sequences (e.g., long reads or a genome assembly) to a reference. It is... | bioinformatics |
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Query:
The Resting-State Causal Human Connectome is Characterized by Hub Connectivity of Executive and Attentional Networks | neuroscience |
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Query:
Vaccination decreases the risk of influenza A virus reassortment with a concomitant increase in subgenomic genetic variation in pigs
Although vaccination is broadly used in North American swine breeding herds, managing swin... | microbiology |
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Query:
Inference of recent admixture using genotype data | genetics |
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Query:
High Gamma and Beta Temporal Interference Stimulation in the Human Motor Cortex Improves Motor Functions
BackgroundTemporal interference (TI) stimulation is a new technique of noninvasive brain stimulation. Envelope-modulat... | neuroscience |
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Query:
Modular development enables rapid design of media for alternative hosts | microbiology |
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Query:
Intergenerational microbial transmission in the little skate (Leucoraja erinacea)
BackgroundMicrobial transmission from parent to offspring is hypothesized to be widespread in vertebrates. However, evidence for this is limi... | microbiology |
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Query:
Hydrogen sulfide blocks HIV rebound by maintaining mitochondrial bioenergetics and redox homeostasis | microbiology |
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Query:
Mutualism-enhancing mutations dominate early adaptation in a microbial community
Species interactions drive species evolution while evolution shapes these interactions. The resulting eco-evolutionary dynamics, their outcome... | evolutionary biology |
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Query:
The gut microbiome is associated with cocaine behavior and predicts addiction vulnerability in adult male rats | neuroscience |
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Query:
Overlapping transcriptional programs promote survival and axonal regeneration of injured retinal ganglion cells
Injured neurons in the adult mammalian central nervous system often die and seldom regenerate axons. To uncover... | neuroscience |
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Query:
Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder | neuroscience |
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Query:
Riboswitch Folds to Holo-Form Like Structure Even in the Absence of Cognate Ligand at High Mg2+ Concentration
Riboswitches are non-coding RNA that regulate gene expression by folding into specific three-dimensional structur... | biophysics |
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Query:
Advancing motion denoising of multiband resting state functional connectivity fMRI data | neuroscience |
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Query:
Differences in durability of PARP inhibition by clinically approved PARP inhibitors: implications for combinations and scheduling
Five PARP inhibitors (PARPi) are approved for cancer treatment, they exploit cancer-specific ... | pharmacology and toxicology |
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Query:
The neural code for 'face cells' is not face specific | neuroscience |
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Query:
The regulatory protein ChuP connects heme and siderophore-mediated iron acquisition systems required for Chromobacterium violaceum virulence
Chromobacterium violaceum is an environmental Gram-negative beta-proteobacterium t... | microbiology |
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Query:
Contrasting resistance and resilience to light variation of the coupled oxic and anoxic componentsof an experimental microbial ecosystem | microbiology |
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Query:
Remdesivir, Zidovudine (AZT) and Nevirapine inhibit Chandipura virus replication through high energy interactions with the RdRp domain of the polymerase protein L
Chandipura Virus (CHPV), a rhabdovirus belonging to mononega... | microbiology |
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Query:
In silico modeling and interactive profiling of BPH resistant R genes with elicitor molecules of rice planthoppers | plant biology |
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Query:
Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation
Carrot (Daucus carota L.) is one of the most cultivated vegetable in the world and of great importance in the human diet. Its storage orga... | genomics |
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Query:
Rbf/E2F1 control growth and endoreplication via steroid-independent Ecdysone Receptor signalling in Drosophila prostate-like secondary cells | cell biology |
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Query:
Canada's human footprint reveals large intact areas juxtaposed against areas under immense anthropogenic pressure
Efforts are underway in Canada to set aside terrestrial lands for conservation, thereby protecting them from ... | ecology |
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Query:
Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH | microbiology |
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Query:
Spatial and temporal expression of PORCN is highly dynamic in the developing mouse cochlea.
The mammalian organ of Corti is a highly specialized sensory organ of the cochlea with a fine-grained pattern that is essential for... | developmental biology |
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Elucidating the acid-base mechanisms underlying otolith overgrowth in fish exposed to ocean acidification | physiology |
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Query:
Adaptive and maladaptive expression plasticity underlying herbicide resistance in an agricultural weed.
Plastic phenotypic responses to environmental change are common, yet we lack a clear understanding of the fitness conse... | evolutionary biology |
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Query:
Ssdp influences Wg expression and embryonic somatic muscle identity in Drosophila melanogaster | developmental biology |
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Query:
Isolation and characterization of SARS-CoV-2 VOC, 20H/501Y.V2, from UAE travelers
Multiple SARS-CoV-2 variants have been emerged and created serious public health in the affected countries. The variant of Concern associated... | microbiology |
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Query:
Functional characterization of the thrombospondin-related paralogous proteins rhoptry discharge factor 1 and 2 unveils phenotypic plasticity in Toxoplasma gondii rhoptry exocytosis | microbiology |
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Query:
The Evolutionary History of Small RNAs in the Solanaceae
The Solanaceae or "nightshade" family is an economically important group that harbors a remarkable amount of diversity. To gain a better understanding of how the uniq... | plant biology |
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Query:
Transgenic Drosophila lines for LexA-dependent gene and growth regulation | genetics |
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Query:
Pleiotropy drives repeatability in the genetic basis of adaptation
Studies of trait-mapping and local adaptation often identify signatures of genetically parallel evolution, where different species evolve similar phenotypes... | genetics |
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Query:
Biparatopic sybody constructs neutralize SARS-CoV-2 variants of concern and mitigate emergence of drug resistance | biochemistry |
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Query:
Prospective cohort study reveals unexpected aetiologies of livestock abortion in northern Tanzania
Livestock abortion is an important cause of productivity losses worldwide and many infectious causes of abortion are zoonoti... | systems biology |
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Query:
Comparative genomics of Acinetobacter baumannii and therapeutic bacteriophages from a patient undergoing phage therapy | microbiology |
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Query:
Maize AFP1 confers antifungal activity by inhibiting chitin deacetylases from a broad range of fungi
Adapted plant pathogenic fungi deacetylate chitin to chitosan to avoid host perception and disarm the chitin-triggered pla... | microbiology |
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Query:
An Autoantigen Profile from Jurkat T-Lymphoblasts Provides a Molecular Guide for Investigating Autoimmune Sequelae of COVID-19 | immunology |
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Query:
Event-driven acquisition for content-enriched microscopy
In fluorescence microscopy, the amount of information that can be collected from the sample is limited, often due to constraints imposed by photobleaching and phototo... | cell biology |
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