1. CellProfiler-Training (12 training modules)
Educational content with problem statements and guided solutions:
- ExampleColocalization: Colocalization training
- ExampleCometAssay: Comet assay training
- ExampleImagingFlowCytometryObjectsInGrid: Flow cytometry training
- ExamplePercentPositive: Percentage analysis training
- ExampleTrackObjects: Object tracking training
- ExampleWoundHealing: Wound healing training
- Tutorial3DFISH: 3D FISH analysis
- Tutorial3DMonolayer: 3D monolayer analysis
- Tutorial3DNoiseNuclei: 3D nuclei with noise
- TutorialBeginnerSegmentation: Basic segmentation
- TutorialTranslocation: Protein translocation analysis
- TutorialUnmix: Color deconvolution
5. CellProfiler-Testing (14 test challenges)
Testing scenarios for algorithm development and validation:
- Various morphological analysis challenges
- Segmentation challenges for different cell types
- Colocalization testing
- Speckle counting validation
- Multi-nuclei segmentation tests