repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
pmeier82/BOTMpy | botmpy/nodes/spike_sorting.py | 1 | 55265 | # -*- coding: utf-8 -*-
#_____________________________________________________________________________
#
# Copyright (c) 2012 Berlin Institute of Technology
# All rights reserved.
#
# Developed by: Philipp Meier <pmeier82@gmail.com>
# Neural Information Processing Group (NI)
# School for Ele... | mit |
mehdidc/scikit-learn | sklearn/ensemble/forest.py | 1 | 59215 | """Forest of trees-based ensemble methods
Those methods include random forests and extremely randomized trees.
The module structure is the following:
- The ``BaseForest`` base class implements a common ``fit`` method for all
the estimators in the module. The ``fit`` method of the base ``Forest``
class calls the ... | bsd-3-clause |
robwarm/gpaw-symm | gpaw/test/parallel/ut_hsops.py | 1 | 31121 |
import gc
import sys
import time
import numpy as np
try:
# Matplotlib is not a dependency
import matplotlib as mpl
mpl.use('Agg') # force the antigrain backend
except (ImportError, RuntimeError):
mpl = None
from ase.units import Bohr
from gpaw.mpi import world, distribute_cpus
from gpaw.utilities.to... | gpl-3.0 |
meteoswiss-mdr/precipattractor | pyscripts/growthdecay/nowcast.py | 1 | 34351 | #!/usr/bin/env python
from __future__ import division
from __future__ import print_function
import os
import sys
import matplotlib as mpl
mpl.use('Agg')
import numpy as np
import matplotlib.pyplot as plt
from datetime import datetime, timedelta
from scipy import fftpack
from scipy.linalg impo... | gpl-3.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/bar/marker/_colorbar.py | 1 | 73319 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "bar.marker"
_path_str = "bar.marker.colorbar"
_valid_props = {
"bgcolor",
... | mit |
ryfeus/lambda-packs | Tensorflow_Pandas_Numpy/source3.6/pandas/core/indexes/datetimelike.py | 1 | 38281 | # -*- coding: utf-8 -*-
"""
Base and utility classes for tseries type pandas objects.
"""
import warnings
import operator
from datetime import datetime, timedelta
from pandas import compat
from pandas.compat.numpy import function as nv
from pandas.core.tools.timedeltas import to_timedelta
import numpy as np
from pan... | mit |
ericpre/hyperspy | hyperspy/_signals/signal1d.py | 1 | 61641 | # -*- coding: utf-8 -*-
# Copyright 2007-2021 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
Dih5/duat | duat/plot.py | 1 | 43200 | # -*- coding: UTF-8 -*-
"""Plot OSIRIS-generated data."""
from __future__ import print_function
from __future__ import division
from glob import glob
import os
import re
from math import floor
import h5py
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import ticker
import matplotlib.colors as col... | mit |
bgruening/docker-jupyter-notebook | jupyter_notebook_config.py | 1 | 49284 | import os
CORS_ORIGIN = ''
CORS_ORIGIN_HOSTNAME = ''
if os.environ['CORS_ORIGIN'] != 'none':
CORS_ORIGIN = os.environ.get('CORS_ORIGIN', '')
CORS_ORIGIN_HOSTNAME = CORS_ORIGIN.split('://')[1]
headers = {
'X-Frame-Options': 'ALLOWALL',
'Content-Security-Policy': """
default-src 'self' ... | mit |
dssg/wikienergy | disaggregator/build/pandas/pandas/tseries/tests/test_timeseries.py | 1 | 165485 | # pylint: disable-msg=E1101,W0612
import calendar
from datetime import datetime, time, timedelta
import sys
import operator
import nose
import numpy as np
randn = np.random.randn
from pandas import (Index, Series, TimeSeries, DataFrame,
isnull, date_range, Timestamp, Period, DatetimeIndex,
... | mit |
mikemoorester/ESM | nadirSiteModel.py | 1 | 42504 | #!/usr/bin/env python
from __future__ import division, print_function, absolute_import
#import matplotlib
#matplotlib.use('Agg')
import numpy as np
#import re
import calendar
import os #, sys
import datetime as dt
#import pickle
import multiprocessing
import antenna as ant
import residuals as res
import gpsTime as ... | mit |
owlabs/incubator-airflow | airflow/contrib/hooks/bigquery_hook.py | 1 | 97702 | # -*- coding: utf-8 -*- # pylint: disable=too-many-lines
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the A... | apache-2.0 |
dereneaton/ipyrad | ipyrad/analysis/window_extracter.py | 1 | 32164 | #!/usr/bin/env python
"""
Extract, filter and format a locus from a scaffold, start, and end
tuple. Intended for extracting concatenated sequence windows.
"""
# py2/3 compat
from __future__ import print_function
# standard lib
import os
import h5py
import itertools
import numpy as np
import pandas as pd
from copy i... | gpl-3.0 |
PySCeS/PyscesToolbox | psctb/analyse/_ratechar.py | 1 | 41608 | from __future__ import division, print_function
from __future__ import absolute_import
from __future__ import unicode_literals
from os import path
from colorsys import hsv_to_rgb, rgb_to_hsv
from collections import OrderedDict
from random import shuffle
import numpy
from pysces.PyscesModelMap import ModelMap
from pys... | bsd-3-clause |
apdavison/elephant | elephant/cell_assembly_detection.py | 1 | 48564 | """
CAD [1] is a method aimed to capture structures of higher-order correlation in
massively parallel spike trains. In particular, it is able to extract
patterns of spikes with arbitrary configuration of time lags (time interval
between spikes in a pattern), and at multiple time scales,
e.g. from synchronous patterns t... | bsd-3-clause |
reflectometry/osrefl | osrefl/viewers/plot_slicer.py | 1 | 35474 | # Copyright (C) 2008 University of Maryland
# All rights reserved.
# See LICENSE.txt for details.
# Author: Christopher Metting
#Starting Date:8/23/2010
from numpy import size, shape, array, log, zeros, ones, argwhere, asarray, ma
from numpy import isneginf,log10,inf,nonzero
from numpy import amin, amax, sum, ceil,a... | bsd-3-clause |
mbayon/TFG-MachineLearning | venv/lib/python3.6/site-packages/pandas/tests/indexes/test_range.py | 3 | 33238 | # -*- coding: utf-8 -*-
import pytest
from datetime import datetime
from itertools import combinations
import operator
from pandas.compat import range, u, PY3
import numpy as np
from pandas import (notnull, Series, Index, Float64Index,
Int64Index, RangeIndex)
import pandas.util.testing as tm
... | mit |
csvelasq/TepUnderScenarios | tepmodel/TepScenariosModels.py | 1 | 37980 | from tepmodel import OptModels as opt
from tepmodel import OpfModels as opf
import pyomo.environ as pyo
import powersys.PowerSystemPlanning as pwsp
import Utils
import plotly
from plotly.graph_objs import Scatter, Layout
import pandas as pd
import xlsxwriter
import collections
import logging
import time
from datetime i... | mit |
miaecle/deepchem | deepchem/metrics/__init__.py | 1 | 31505 | """Evaluation metrics."""
import numpy as np
import warnings
import sklearn.metrics
import logging
from sklearn.metrics import matthews_corrcoef
from sklearn.metrics import recall_score
from sklearn.metrics import cohen_kappa_score
from sklearn.metrics import r2_score
from sklearn.metrics import mean_squared_error
fro... | mit |
muthu1993/InteliEQ | audioSegmentation.py | 1 | 46767 | import numpy
import sklearn.cluster
import time
import scipy
import os
import audioFeatureExtraction as aF
import audioTrainTest as aT
import audioBasicIO
import matplotlib.pyplot as plt
from scipy.spatial import distance
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import sklearn.discriminant_analysis
im... | apache-2.0 |
interrogator/corpkit | corpkit/conll.py | 1 | 52013 | """
corpkit: process CONLL formatted data
"""
def parse_conll(f,
first_time=False,
just_meta=False,
usecols=None):
"""
Make a pandas.DataFrame with metadata from a CONLL-U file
Args:
f (str): Filepath
first_time (bool, optional): If True,... | mit |
MJuddBooth/pandas | pandas/tests/generic/test_generic.py | 1 | 32817 | # -*- coding: utf-8 -*-
# pylint: disable-msg=E1101,W0612
from copy import copy, deepcopy
from warnings import catch_warnings, simplefilter
import numpy as np
import pytest
from pandas.compat import PY3, range, zip
from pandas.core.dtypes.common import is_scalar
import pandas as pd
from pandas import DataFrame, Mu... | bsd-3-clause |
aburgasser/splat | splat/core.py | 1 | 321399 | # -*- coding: utf-8 -*-
from __future__ import print_function
# imports - internal
import copy
import bz2
import glob
import gzip
import os
import shutil
import sys
import warnings
# imports - external
import matplotlib
#try: matplotlib.use('agg')
#except: pass
import matplotlib.pyplot as plt
import numpy
import pand... | mit |
broadinstitute/cms | old/Operations/MiscUtil.py | 1 | 106244 | """Miscellaneous general-purpose utilities, that are not specific to our particular datasets.
For general utilities related to our datasets, see Operations.Ilya_Operations.DataUtil.py .
"""
from __future__ import with_statement, division
import platform
assert platform.python_version_tuple() >= ( 2, 6 )
import sys, ... | bsd-2-clause |
SasView/sasmodels | sasmodels/sasview_model.py | 1 | 36967 | """
Sasview model constructor.
Given a module defining an OpenCL kernel such as sasmodels.models.cylinder,
create a sasview model class to run that kernel as follows::
from sasmodels.sasview_model import load_custom_model
CylinderModel = load_custom_model('sasmodels/models/cylinder.py')
"""
from __future__ im... | bsd-3-clause |
m4sth0/sauventory | sauventory/spatialinventory.py | 1 | 33062 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# Copyright (c) 2016
# Author(s):
# Thomas Leppelt <thomas.leppelt@dwd.de>
# This file is part of sauventory.
# Spatial Autocorrelated Uncertainty of Inventories
# sauventory is free software: you can redistribute it and/or modify
# it under the terms of the GNU Gener... | gpl-3.0 |
timothydmorton/exosyspop | exosyspop/populations.py | 1 | 60291 | from __future__ import print_function, division
import numpy as np
import pandas as pd
import os, os.path, shutil
import logging
# This disables expensive garbage collection calls
# within pandas. Took forever to figure this out.
pd.set_option('mode.chained_assignment', None)
import matplotlib.pyplot as plt
from s... | mit |
CompPhysics/ComputationalPhysics2 | doc/LectureNotes/_build/jupyter_execute/vmcdmc.py | 1 | 124254 | # Variational Monte Carlo methods
## Quantum Monte Carlo Motivation
We start with the variational principle.
Given a hamiltonian $H$ and a trial wave function $\Psi_T$, the variational principle states that the expectation value of $\langle H \rangle$, defined through
$$
E[H]= \langle H \rangle =
\frac{\int d\bol... | cc0-1.0 |
joellevine/dwv_parushev_corp_map02 | example_Parushev01_2dim_p/rectangle_driver007inprocess.py | 1 | 115626 | ## Copyright (C) 2012 Joel H. Levine
##
## Permission is hereby granted, free of charge, to any person obtaining
## a copy of this software and associated documentation files (the "Software"),
## to deal in the Software without restriction,including without limitation
## the rights to use, copy, modify, merge, publish,... | mit |
oknuutti/visnav-py | visnav/algo/tools.py | 1 | 49191 | import math
import time
import numpy as np
import numba as nb
import quaternion # adds to numpy # noqa # pylint: disable=unused-import
import sys
import scipy
from astropy.coordinates import SkyCoord
from scipy.interpolate import RectBivariateSpline
from scipy.interpolate import NearestNDInterpolator
# from scipy.s... | mit |
maartenbreddels/vaex | packages/vaex-ui/vaex/ui/layers.py | 1 | 133057 | import collections
import operator
import vaex.vaexfast
import threading
import matplotlib
import numpy as np
import scipy.ndimage
import matplotlib.colors
import traceback
import vaex
import vaex.delayed
import vaex.ui.storage
import vaex.ui.undo
import vaex.ui.colormaps
import vaex.grids
from vaex.ui.icons import ic... | mit |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_New_Server_0629_2015.py | 1 | 47437 | # change the momentum to 0.
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
CompPhysics/MachineLearning | doc/src/LectureNotes/_build/jupyter_execute/chapter2.py | 1 | 60720 | # Elements of Probability Theory and Statistical Data Analysis
* add math about MVN and define MLE and other quantities
* rewrite about covariance matrix
* add KL theorem
## Domains and probabilities
Consider the following simple example, namely the tossing of two dice, resulting in the following possible values... | cc0-1.0 |
rstoneback/pysat | pysat/_orbits.py | 2 | 37455 | from __future__ import print_function
from __future__ import absolute_import
import functools
import numpy as np
import pandas as pds
from pysat import Series
class Orbits(object):
"""Determines orbits on the fly and provides orbital data in .data.
Determines the locations of orbit breaks in the loaded dat... | bsd-3-clause |
nbeaver/numpy | numpy/core/tests/test_multiarray.py | 1 | 238490 | from __future__ import division, absolute_import, print_function
import collections
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import ctypes
import os
if sys.version_info[0] >= 3:
import builtins
else:
import __builtin__ as builtins
from decimal import D... | bsd-3-clause |
lcpt/xc | python_modules/rough_calculations/ng_retaining_wall.py | 1 | 32976 | # -*- coding: utf-8 -*-
from __future__ import division
'''Routines for cantilever retaining walls design.'''
__author__= "Luis C. Pérez Tato (LCPT)"
__copyright__= "Copyright 2016, LCPT"
__license__= "GPL"
__version__= "3.0"
__email__= "l.pereztato@gmail.com"
import sys
from postprocess.reports import common_format... | gpl-3.0 |
university-gender-evolution/py-university-gender-dynamics-pkg | pyugend/Models.py | 1 | 31092 | """
Base Model Module
-----------------
This is the base class for all model modules. This class does not contain an particular model but it does include all of the functions to run a model, capture model statistics, and visualize model data.
"""
__author__ = 'krishnab'
__version__ = '0.1.0'
import numpy as np
impo... | mit |
nielsbuwen/ilastik | ilastik/applets/pixelClassification/pixelClassificationGui.py | 3 | 36553 | ###############################################################################
# ilastik: interactive learning and segmentation toolkit
#
# Copyright (C) 2011-2014, the ilastik developers
# <team@ilastik.org>
#
# This program is free software; you can redistribute it and/or
# mod... | gpl-3.0 |
dksr/REMIND | python/base/vis/generate_cartoon_events/sp_rels_gui.py | 1 | 112676 | """ sp_rels_gui
Based on pySketch from wx demos.
Known Bugs:
* Scrolling the window causes the drawing panel to be mucked up until you
refresh it. I've got no idea why.
* I suspect that the reference counting for some wxPoint objects is
getting mucked up; when the user quits... | mit |
dbtsai/spark | python/pyspark/ml/clustering.py | 1 | 61333 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/io/pytables.py | 1 | 154962 | """
High level interface to PyTables for reading and writing pandas data structures
to disk
"""
# pylint: disable-msg=E1101,W0613,W0603
from datetime import datetime, date
import time
import re
import copy
import itertools
import warnings
import os
import numpy as np
from pandas import (Series, TimeSeries, DataFrame,... | mit |
to266/hyperspy | hyperspy/_signals/eds.py | 1 | 43663 | # -*- coding: utf-8 -*-
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
rodluger/everest | everest/detrender.py | 1 | 68576 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
:py:mod:`detrender.py` - De-trending models
-------------------------------------------
This module contains the generic models used to de-trend light curves for
the various supported missions. Most of the functionality is implemented in
:py:class:`Detrender`, and spec... | mit |
haidawyl/MLinAction | 支持向量机SVM/svmMLiA.py | 1 | 36234 | #!/usr/bin/python
# -*- coding:utf-8 -*-
import math
import random
import numpy as np
from time import time
import matplotlib as mpl
import matplotlib.pyplot as plt
def loadDataSet(filename):
'''
读文件生成数据矩阵和类标签矩阵
:param filename: 文件路径
:return: 数据矩阵和类标签矩阵
'''
dataMat = [] # 数据矩阵
labelMat = ... | apache-2.0 |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/tools/tests/test_merge.py | 1 | 99055 | # pylint: disable=E1103
import nose
from datetime import datetime
from numpy.random import randn
from numpy import nan
import numpy as np
import random
import pandas as pd
from pandas.compat import range, lrange, lzip, zip, StringIO
from pandas import compat
from pandas.tseries.index import DatetimeIndex
from pandas... | mit |
shoyer/numpy | numpy/core/tests/test_multiarray.py | 1 | 306152 | from __future__ import division, absolute_import, print_function
try:
# Accessing collections abstract classes from collections
# has been deprecated since Python 3.3
import collections.abc as collections_abc
except ImportError:
import collections as collections_abc
import tempfile
import sys
import sh... | bsd-3-clause |
wesm/ibis | ibis/impala/tests/test_ddl.py | 1 | 37275 | # Copyright 2014 Cloudera Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, so... | apache-2.0 |
rustychris/stompy | stompy/xr_transect.py | 1 | 44596 | """
Methods for representing and manipulating transects
in xarray datasets.
Transects being a dataset with the form
x(s), y(s), z(s,k) or z(k)
u(s,k), v(s,k), etc.
where x(s),y(s) describes a polyline.
names are somewhat standardized, but can generally be provided
U: vector valued velocity in geographic coordinate ... | mit |
natl/fractaldna | simpledna/dnachain.py | 1 | 48270 | """
Class description of a DNA chain built of base pairs
"""
from __future__ import division, unicode_literals, print_function
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D # NOQA
from copy import deepcopy
from scipy.interpolate import interp1d
try:
from mayavi import... | gpl-3.0 |
rozzac90/nba | nba/endpoints/team.py | 1 | 129387 | import requests
import pandas as pd
from nba import enums
from nba.utils import clean_locals
from nba.endpoints.baseendpoint import BaseEndpoint
class Team(BaseEndpoint):
def team_details(self, team_id, idx_data):
params = clean_locals(locals())
endpoint = "teamdetails"
r = self.request(e... | mit |
axbaretto/beam | sdks/python/apache_beam/dataframe/frames.py | 1 | 126538 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
tedunderwood/fiction | variation/main_experiment.py | 1 | 114761 | #!/usr/bin/env python3
# main_experiment.py
# USAGE syntax:
# python3 main_experiment.py *command*
# Where *command* is one of the following codes.
# I have tried to start with functions that are
# relatively important to the argument of the article.
# sf_periods
# Runs sf_periods(), which simply assesses the ease... | mit |
amirkdv/biseqt | experiments/multiple_sequence.py | 1 | 30709 | #!/usr/bin/env python
import numpy as np
import sys
import logging
from itertools import product
import matplotlib
from matplotlib import pyplot as plt
from matplotlib import gridspec
from mpl_toolkits.mplot3d import Axes3D
from Bio import AlignIO
from time import time
from biseqt.sequence import Alphabet
from biseqt.... | bsd-3-clause |
duane-edgington/stoqs | stoqs/utils/STOQSQManager.py | 1 | 136384 | __author__ = 'Mike McCann'
__copyright__ = '2012'
__license__ = 'GPL v3'
__contact__ = 'mccann at mbari.org'
__doc__ = '''
STOQS Query manager for building ajax responses to selections made for QueryUI
@undocumented: __doc__ parser
@status: production
@license: GPL
'''
from collections import defaultdict, Ma... | gpl-3.0 |
aeklant/scipy | scipy/integrate/quadrature.py | 2 | 31375 | import functools
import numpy as np
import math
import types
import warnings
# trapz is a public function for scipy.integrate,
# even though it's actually a NumPy function.
from numpy import trapz
from scipy.special import roots_legendre
from scipy.special import gammaln
__all__ = ['fixed_quad', 'quadrature', 'romber... | bsd-3-clause |
drgmk/sdf | sdf/plotting.py | 1 | 49624 | import io
from datetime import datetime
from os import path,remove
import pickle
import requests
import ast
import numpy as np
import matplotlib.pyplot as plt
import mysql.connector
import astropy.units as u
import jinja2
import bokeh.resources
from bokeh.plotting import figure,ColumnDataSource
from bokeh.models.widg... | mit |
actility/ong | drivers/iec61131/beremiz.addons/IDEFrame.py | 1 | 125229 |
import os, sys
import cPickle
from types import TupleType
import wx, wx.grid
import wx.aui
try:
import matplotlib
matplotlib.use('WX')
USE_MPL = True
except:
USE_MPL = False
from editors.EditorPanel import EditorPanel
from editors.SFCViewer import SFC_Viewer
from editors.LDViewer import LD_Viewer
fr... | gpl-2.0 |
joshfuchs/ZZCeti_fitting | intspec.py | 1 | 52140 | # -*- coding: utf-8 -*-
"""
Created on Sun Jan 18 20:16:17 2015
@author: joshfuchs, based on some initial work by BH Dunlap
This program is run from fitspec.py. It interpolates and convolves the models, fits them with pseudogaussians, and normalizes. It compared the model lines to the observed line profiles and calcu... | mit |
s-t-e-a-l-t-h/Eclipsing-binaries-library | objects/Geometry.py | 1 | 116086 | #!/usr/bin/python
""" Geometry trieda
-------------------
Obsahuje "geometricke" funkcie
Inicializacne parametre:
------------------------
Staticka trieda, ziadne inicializacne parametre
Metody a strucny popis (blizsi popis funkcnosti v komentaroch k jednotlivym riadkom kodu v funkciach):
-----------------------... | gpl-3.0 |
voytekresearch/misshapen | shape.py | 1 | 32116 | """
This library contains metrics to quantify the shape of a waveform
1. threshold_amplitude - only look at a metric while oscillatory amplitude is above a set percentile threshold
2. rdratio - Ratio of rise time and decay time
3. pt_duration - Peak and trough durations and their ratio
3. symPT - symmetry between peak ... | mit |
pdebuyl/numpy | numpy/core/tests/test_multiarray.py | 1 | 315131 | import collections.abc
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import functools
import ctypes
import os
import gc
import weakref
import pytest
from contextlib import contextmanager
from numpy.compat import pickle
import pathlib
import builtins
from decimal i... | bsd-3-clause |
bigdig/vnpy | vnpy/app/cta_strategy/backtesting.py | 1 | 41210 | from collections import defaultdict
from datetime import date, datetime, timedelta
from typing import Callable
from itertools import product
from functools import lru_cache
from time import time
import multiprocessing
import random
import traceback
import numpy as np
from pandas import DataFrame
import plotly.graph_ob... | mit |
jtwhite79/pyemu | pyemu/pst/pst_utils.py | 1 | 64723 | """Various PEST(++) control file peripheral operations"""
from __future__ import print_function, division
import os
import warnings
import multiprocessing as mp
import re
import numpy as np
import pandas as pd
pd.options.display.max_colwidth = 100
import pyemu
from ..pyemu_warnings import PyemuWarning
# formatters
#... | bsd-3-clause |
keflavich/plfit | plfit/plfit.py | 1 | 41344 | # -*- coding: latin-1 -*-
#
# intended to implement a power-law fitting routine as specified in.....
# http://www.santafe.edu/~aaronc/powerlaws/
#
# The MLE for the power-law alpha is very easy to derive given knowledge
# of the lowest value at which a power law holds, but that point is
# difficult to derive and must b... | mit |
hschovanec-usgs/magpy | magpy/gui/magpy_gui.py | 1 | 186304 | #!/usr/bin/env python
from __future__ import print_function
import wx
from matplotlib.backends.backend_wxagg import FigureCanvasWxAgg as FigureCanvas
from matplotlib.backends.backend_wx import NavigationToolbar2Wx
from matplotlib.figure import Figure
try: # Necessary for wx2.8.11.0
from wx.lib.pubsub import setu... | gpl-3.0 |
nborggren/zipline | tests/pipeline/test_blaze.py | 1 | 38186 | """
Tests for the blaze interface to the pipeline api.
"""
from __future__ import division
from collections import OrderedDict
from datetime import timedelta, time
from unittest import TestCase
import warnings
import blaze as bz
from datashape import dshape, var, Record
from nose_parameterized import parameterized
im... | apache-2.0 |
amloewi/css-blockmodels | blockmodels.py | 1 | 34364 |
import os
import sys
import csv
import copy
import math
import collections
import pdb
import numpy as np
rand = np.random.random
import networkx as nx
import pygraphviz as gv
import colour
# This is for the kmeans stuff -- which I kinda think
# should be in HERE. Also, I don't WANT to have
# em import bm and bm imp... | mit |
louispotok/pandas | pandas/tests/frame/test_reshape.py | 1 | 36625 | # -*- coding: utf-8 -*-
from __future__ import print_function
from warnings import catch_warnings
from datetime import datetime
import itertools
import pytest
from numpy.random import randn
from numpy import nan
import numpy as np
from pandas.compat import u
from pandas import (DataFrame, Index, Series, MultiIndex... | bsd-3-clause |
humdings/zipline | tests/test_assets.py | 2 | 57136 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
aricooperman/Jzipline | zipline/testing/core.py | 2 | 39840 | from abc import ABCMeta, abstractmethod, abstractproperty
from contextlib import contextmanager
from functools import wraps
import gzip
from inspect import getargspec
from itertools import (
combinations,
count,
product,
)
import operator
import os
from os.path import abspath, dirname, join, realpath
import... | apache-2.0 |
xuewei4d/scikit-learn | sklearn/cross_decomposition/_pls.py | 3 | 36015 | """
The :mod:`sklearn.pls` module implements Partial Least Squares (PLS).
"""
# Author: Edouard Duchesnay <edouard.duchesnay@cea.fr>
# License: BSD 3 clause
import warnings
from abc import ABCMeta, abstractmethod
import numpy as np
from scipy.linalg import pinv2, svd
from ..base import BaseEstimator, RegressorMixin... | bsd-3-clause |
pizzathief/scipy | scipy/stats/stats.py | 1 | 280834 | # Copyright 2002 Gary Strangman. All rights reserved
# Copyright 2002-2016 The SciPy Developers
#
# The original code from Gary Strangman was heavily adapted for
# use in SciPy by Travis Oliphant. The original code came with the
# following disclaimer:
#
# This software is provided "as-is". There are no expressed or... | bsd-3-clause |
TomAugspurger/pandas | pandas/tests/groupby/transform/test_transform.py | 1 | 38364 | """ test with the .transform """
from io import StringIO
import numpy as np
import pytest
from pandas._libs import groupby
from pandas.core.dtypes.common import ensure_platform_int, is_timedelta64_dtype
import pandas as pd
from pandas import (
Categorical,
DataFrame,
MultiIndex,
Series,
Timestam... | bsd-3-clause |
Leguark/GeMpy | build/lib/pygeomod/build/lib/pygeomod/geogrid.py | 1 | 49092 | '''Module with classes and methods to analyse and process exported geomodel grids
Created on 21/03/2014
@author: Florian Wellmann (some parts originally developed by Erik Schaeffer)
'''
import numpy as np
#import pynoddy
import subprocess
import os.path
import platform
try:
import matplotlib.pyplot as plt
except... | mit |
michalsenkyr/spark | python/pyspark/sql/tests.py | 1 | 286952 | # -*- encoding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the ... | apache-2.0 |
YihaoLu/pyfolio | pyfolio/plotting.py | 1 | 41802 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
albertfxwang/grizli | grizli/stack.py | 1 | 52521 | """
Utilities for fitting stacked (drizzled) spectra
"""
from collections import OrderedDict
from imp import reload
import astropy.io.fits as pyfits
import astropy.units as u
import numpy as np
from . import utils
from .utils import GRISM_COLORS, GRISM_MAJOR, GRISM_LIMITS, DEFAULT_LINE_LIST
from .fitting import Gro... | mit |
brainiak/brainiak | brainiak/reconstruct/iem.py | 1 | 45193 | # Copyright 2018 David Huberdeau & Peter Kok
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or... | apache-2.0 |
google/makani | analysis/force_balance_loop/power_calcs/kite_path.py | 1 | 33928 | # Copyright 2020 Makani Technologies LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | apache-2.0 |
ehsanfar/ofspy_v2 | bin/ofs-exp-pp.py | 1 | 41701 | """
Copyright 2015 Paul T. Grogan, Massachusetts Institute of Technology
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicabl... | apache-2.0 |
rohit21122012/DCASE2013 | runs/2013/dnngddelta/dnn6.py | 1 | 33219 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# DCASE 2016::Acoustic Scene Classification / Baseline System
#import sys
#sys.path.insert(0, '../')
from src.ui import *
from src.general import *
from src.files import *
from src.features import *
from src.dataset import *
from src.evaluation import *
import numpy
im... | mit |
rgommers/statsmodels | statsmodels/tsa/arima_model.py | 1 | 70072 | # Note: The information criteria add 1 to the number of parameters
# whenever the model has an AR or MA term since, in principle,
# the variance could be treated as a free parameter and restricted
# This code does not allow this, but it adds consistency with other
# packages such as gretl and X1... | bsd-3-clause |
plotly/python-api | packages/python/plotly/plotly/graph_objs/layout/ternary/_caxis.py | 1 | 66366 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Caxis(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout.ternary"
_path_str = "layout.ternary.caxis"
_valid_props = {
"color",
... | mit |
tapomayukh/projects_in_python | classification/Classification_with_HMM/Single_Contact_Classification/Variable_Stiffness_Variable_Velocity/HMM/with 2s/hmm_crossvalidation_force_motion_20_states_scaled_wrt_all_data.py | 1 | 41623 | # Hidden Markov Model Implementation
import pylab as pyl
import numpy as np
import matplotlib.pyplot as pp
#from enthought.mayavi import mlab
import scipy as scp
import scipy.ndimage as ni
import roslib; roslib.load_manifest('sandbox_tapo_darpa_m3')
import rospy
#import hrl_lib.mayavi2_util as mu
import hrl_lib.viz ... | mit |
cbertinato/pandas | pandas/tests/io/test_sql.py | 1 | 98718 | """SQL io tests
The SQL tests are broken down in different classes:
- `PandasSQLTest`: base class with common methods for all test classes
- Tests for the public API (only tests with sqlite3)
- `_TestSQLApi` base class
- `TestSQLApi`: test the public API with sqlalchemy engine
- `TestSQLiteFallbackApi`: t... | bsd-3-clause |
equialgo/scikit-learn | sklearn/cross_validation.py | 1 | 72107 |
"""
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
fro... | bsd-3-clause |
Gjacquenot/PyRayTracer | raytracer/raytracer.py | 1 | 36942 | # -*- coding: utf-8 -*-
"""
Preliminary code for ray tracing with Python and VTK
Thanks to
https://pyscience.wordpress.com/2014/10/05/from-ray-casting-to-ray-tracing-with-python-and-vtk/
In order to proceed, you will have to exit the renderwindow, it is waiting for your input.
@author: Adamos Kyriokou, Jaap Verhegge... | mit |
lucapinello/CRISPResso | CRISPResso/CRISPRessoCORE.py | 1 | 127566 | #!/usr/bin/env python
# -*- coding: utf8 -*-
'''
CRISPResso - Luca Pinello 2015
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing data
https://github.com/lucapinello/CRISPResso
'''
__version__ = "1.0.13"
import sys
import errno
import os
import subprocess as sb
import ar... | agpl-3.0 |
TomAugspurger/pandas | pandas/tests/io/formats/test_style.py | 1 | 64277 | import copy
import re
import textwrap
import numpy as np
import pytest
import pandas.util._test_decorators as td
import pandas as pd
from pandas import DataFrame
import pandas._testing as tm
jinja2 = pytest.importorskip("jinja2")
from pandas.io.formats.style import Styler, _get_level_lengths # noqa # isort:skip
... | bsd-3-clause |
KarrLab/obj_model | obj_model/io.py | 1 | 96862 | """ Reading/writing schema objects to/from files
* Comma separated values (.csv)
* Excel (.xlsx)
* JavaScript Object Notation (.json)
* Tab separated values (.tsv)
* Yet Another Markup Language (.yaml, .yml)
:Author: Jonathan Karr <karr@mssm.edu>
:Author: Arthur Goldberg <Arthur.Goldberg@mssm.edu>
:Date: 2016-11-23
:... | mit |
shoyer/numpy | numpy/lib/polynomial.py | 1 | 40727 | """
Functions to operate on polynomials.
"""
from __future__ import division, absolute_import, print_function
__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
'polyfit', 'RankWarning']
import functools
import re
import warnings
i... | bsd-3-clause |
jaeilepp/mne-python | mne/report.py | 1 | 68089 | """Generate self-contained HTML reports from MNE objects."""
# Authors: Alex Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Mainak Jas <mainak@neuro.hut.fi>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
import os
import os.path as op
import fnmatch
import re
import codecs
i... | bsd-3-clause |
rabernat/xray | xarray/tests/test_dataarray.py | 1 | 131057 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import numpy as np
import pandas as pd
import pickle
import pytest
from copy import deepcopy
from textwrap import dedent
from distutils.version import LooseVersion
import xarray as xr
from xarray import (align... | apache-2.0 |
jbonaiuto/perceptual-choice-hysteresis | src/python/perceptchoice/experiment/analysis.py | 1 | 52031 | from datetime import datetime
import os
from matplotlib.mlab import normpdf
from matplotlib.patches import Rectangle
import numpy as np
import pandas as pd
import statsmodels.api as sm
from scipy.stats import wilcoxon, norm, mannwhitneyu
from sklearn.linear_model import LinearRegression
import matplotlib.pyplot as plt
... | gpl-3.0 |
zhuangjun1981/retinotopic_mapping | retinotopic_mapping/tools/ImageAnalysis.py | 1 | 49726 | __author__ = 'junz'
import matplotlib.pyplot as plt
import numpy as np
from scipy import interpolate
import scipy.ndimage as ni
import skimage.morphology as sm
import FileTools as ft
import PlottingTools as pt
try:
import cv2
except ImportError as e:
print e
def resample(t1, y1, interval, kind='linear', isP... | gpl-3.0 |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/layout/scene/_zaxis.py | 1 | 98648 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class ZAxis(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout.scene"
_path_str = "layout.scene.zaxis"
_valid_props = {
"autorange",
... | mit |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/tseries/tdi.py | 1 | 32550 | """ implement the TimedeltaIndex """
from datetime import timedelta
import numpy as np
from pandas.core.common import (ABCSeries, _TD_DTYPE, _INT64_DTYPE,
_maybe_box,
_values_from_object, isnull,
is_integer, is_float)
from ... | mit |
bjornsturmberg/NumBAT | backend/integration.py | 1 | 38595 | # mode_calcs.py is a subroutine of NumBAT that contains methods to
# calculate the EM and Acoustic modes of a structure.
# Copyright (C) 2017 Bjorn Sturmberg, Kokou Dossou,
# NumBAT is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | gpl-3.0 |
NICTA/revrand | revrand/basis_functions.py | 1 | 60389 | """
Various basis function objects specialised for parameter learning.
To make a new basis object, see the documentation of the Basis class.
"""
from __future__ import division
import sys
import inspect
from itertools import repeat
from functools import reduce
import numpy as np
from six import wraps
from decorato... | apache-2.0 |
asreimer/pyAMISR | visuamisr/analyze.py | 1 | 43215 | # -*- coding: utf-8 -*-
# Copyright (C) 2013 Ashton S. Reimer
# Full license can be found in LICENSE.txt
"""
.. module:: analyze
:synopsis: Used for basic visualization of ISR data. accepts data in
hdf5 format only. This module read data from the hdf5 in
tp a dictionary with the followin... | gpl-3.0 |
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