repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
jszymon/pacal | pacal/depvars/copulas.py | 1 | 34667 | """Set of copulas different types"""
from __future__ import print_function
from pacal.integration import *
from pacal.interpolation import *
from matplotlib.collections import PolyCollection
import pacal.distr
#from pacal import *
from pacal.segments import PiecewiseDistribution, MInfSegment, PInfSegment, Segment, _... | gpl-3.0 |
Newman101/scipy | scipy/stats/morestats.py | 1 | 95422 | # Author: Travis Oliphant, 2002
#
# Further updates and enhancements by many SciPy developers.
#
from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, around, unique, asarray,
... | bsd-3-clause |
jmatta1/MIMiC_MDA | mda.py | 1 | 91141 | #!/usr/bin/python
"""This program performs a multipole decomposition analysis of the data and
options given in the configuration file. First it finds starting points using
the BFGS algorithm from a variety of starting positions given in the config
file. Then it takes those starting points, refines them and finds parame... | gpl-3.0 |
TomAugspurger/pandas | pandas/tests/reductions/test_reductions.py | 1 | 44516 | from datetime import datetime, timedelta
import numpy as np
import pytest
import pandas as pd
from pandas import (
Categorical,
DataFrame,
DatetimeIndex,
Index,
NaT,
Period,
PeriodIndex,
RangeIndex,
Series,
Timedelta,
TimedeltaIndex,
Timestamp,
isna,
timedelta_r... | bsd-3-clause |
daniJb/glyco-analysis | source/Glycogen_analysis_v2_bl274.py | 1 | 81108 | # Glycogen_analysis.py (C) 2015, Heikki Lehvaeslaiho, Corrado Cali, Jumana Baghabra, Daniya Boges
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, o... | gpl-3.0 |
sauloal/cnidaria | scripts/venv/lib/python2.7/site-packages/pandas/tseries/tdi.py | 1 | 31346 | """ implement the TimedeltaIndex """
import operator
import datetime
from datetime import timedelta
import numpy as np
from pandas.core.common import (ABCSeries, _TD_DTYPE, _INT64_DTYPE,
is_timedelta64_dtype, _maybe_box,
_values_from_object, isnull, is_i... | mit |
kgullikson88/Telluric-Fitter | src/TelluricFitter.py | 1 | 65202 | """
Telluric Fitter "TelFit"
=====================================================
This module provides the 'TelluricFitter' class, used
to fit the telluric lines in data.
Usage:
- Initialize fitter: fitter = TelluricFitter()
- Define variables to fit: must provide a dictionary where
the key is the name of t... | mit |
gautam1858/tensorflow | tensorflow/tools/compatibility/tf_upgrade_v2_test.py | 1 | 41905 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
MJuddBooth/pandas | scripts/tests/test_validate_docstrings.py | 1 | 34703 | import io
import random
import string
import textwrap
import pytest
import numpy as np
import pandas as pd
import validate_docstrings
validate_one = validate_docstrings.validate_one
class GoodDocStrings(object):
"""
Collection of good doc strings.
This class contains a lot of docstrings that should pass... | bsd-3-clause |
googleinterns/cabby | cabby/geo/walk.py | 1 | 32147 | # coding=utf-8
# Copyright 2020 Google LLC
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to ... | apache-2.0 |
mariusvniekerk/ibis | ibis/sql/tests/test_compiler.py | 1 | 63094 | # Copyright 2014 Cloudera Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, so... | apache-2.0 |
dimonaks/siman | siman/analysis.py | 1 | 48284 | # -*- coding: utf-8 -*-
#Copyright Aksyonov D.A
from __future__ import division, unicode_literals, absolute_import
import os, copy, shutil, sys
import numpy as np
try:
import scipy
from scipy import interpolate
# from scipy.interpolate import spline
# print (scipy.__version__)
# print (dir(inter... | gpl-2.0 |
ganong123/HARK | gn/old/cons_model.py | 1 | 74777 | # -*- coding: utf-8 -*-
"""
Created on Mon Jun 20 15:55:59 2016
@author: ganong
"""
import os
os.environ["R_HOME"] = "/Library/Frameworks/R.framework/Resources"
os.chdir("/Users/ganong/repo/HARK-comments-and-cleanup/gn")
out_path = "~/dropbox/hampra/out/"
import settings
import sys
sys.path.insert(0,'../')
sys.path.i... | apache-2.0 |
mattip/numpy | numpy/linalg/linalg.py | 1 | 89483 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
majetideepak/arrow | python/pyarrow/tests/test_pandas.py | 1 | 108412 | # -*- coding: utf-8 -*-
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "... | apache-2.0 |
datapythonista/pandas | pandas/tests/reductions/test_reductions.py | 1 | 49340 | from datetime import (
datetime,
timedelta,
)
import numpy as np
import pytest
import pandas as pd
from pandas import (
Categorical,
DataFrame,
DatetimeIndex,
Index,
NaT,
Period,
PeriodIndex,
RangeIndex,
Series,
Timedelta,
TimedeltaIndex,
Timestamp,
date_ran... | bsd-3-clause |
bccp/nbodykit | nbodykit/extern/docrep.py | 1 | 34235 | import types
import six
import inspect
import re
from warnings import warn
def dedents(s):
warn("The dedent function has been depreceated and will be removed soon. "
"Use inspect.cleandoc instead", DeprecationWarning, stacklevel=2)
return inspect.cleandoc(s)
__version__ = '0.2.7'
__author__ = 'Phi... | gpl-3.0 |
puruckertom/ubertool | ubertool/ted/ted_functions.py | 1 | 158720 | from __future__ import division # brings in Python 3.0 mixed type calculation rules
import logging
import numpy as np
from numpy import math
import pandas as pd
import math
class TedFunctions(object):
"""
Function class for TED model.
"""
def __init__(self):
"""Class representing the functio... | unlicense |
hagne/atm-py | atmPy/aerosols/size_distribution/sizedistribution.py | 1 | 146186 | from copy import deepcopy
import numpy as _np
import matplotlib.pylab as _plt
from matplotlib.colors import LogNorm
from matplotlib.ticker import MaxNLocator as _MaxNLocator
from atmPy.tools import plt_tools, math_functions, array_tools
from atmPy.tools import pandas_tools as _panda_tools
from atmPy.general import ti... | mit |
mrkm4ntr/incubator-airflow | tests/providers/google/cloud/hooks/test_bigquery.py | 1 | 73943 | #
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not... | apache-2.0 |
GuessWhoSamFoo/pandas | pandas/tests/frame/test_dtypes.py | 1 | 41479 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import timedelta
import numpy as np
import pytest
from pandas.compat import u
from pandas.core.dtypes.dtypes import CategoricalDtype, DatetimeTZDtype
import pandas as pd
from pandas import (
Categorical, DataFrame, Series, Timedelta, ... | bsd-3-clause |
henry0312/LightGBM | python-package/lightgbm/dask.py | 1 | 40941 | # coding: utf-8
"""Distributed training with LightGBM and dask.distributed.
This module enables you to perform distributed training with LightGBM on
dask.Array and dask.DataFrame collections.
It is based on dask-lightgbm, which was based on dask-xgboost.
"""
import socket
from collections import defaultdict
from copy... | mit |
arokem/scipy | scipy/special/add_newdocs.py | 1 | 236527 | # Docstrings for generated ufuncs
#
# The syntax is designed to look like the function add_newdoc is being
# called from numpy.lib, but in this file add_newdoc puts the
# docstrings in a dictionary. This dictionary is used in
# _generate_pyx.py to generate the docstrings for the ufuncs in
# scipy.special at the C level... | bsd-3-clause |
webmasterraj/FogOrNot | flask/lib/python2.7/site-packages/pandas/tseries/tdi.py | 2 | 31360 | """ implement the TimedeltaIndex """
import operator
import datetime
from datetime import timedelta
import numpy as np
from pandas.core.common import (ABCSeries, _TD_DTYPE, _INT64_DTYPE,
is_timedelta64_dtype, _maybe_box,
_values_from_object, isnull, is_i... | gpl-2.0 |
hposborn/Namaste | namaste/run.py | 1 | 66119 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
:py:mod:`Namaste.py` - Single transit fitting code
-------------------------------------
'''
import numpy as np
import pylab as plt
import scipy.optimize as optimize
from os import sys, path
import datetime
import logging
import pandas as pd
import click
import emcee... | mit |
rseubert/scikit-learn | sklearn/tree/tree.py | 3 | 32977 | """
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | bsd-3-clause |
hchauvet/beampy | beampy/modules/core.py | 1 | 58005 | # -*- coding: utf-8 -*-
"""
Created on Sun Oct 25 20:33:18 2015
@author: hugo
"""
from beampy import document
from beampy.functions import (gcs, create_element_id,
check_function_args, get_command_line,
convert_unit, pre_cache_svg_image,
... | gpl-3.0 |
jmargeta/scikit-learn | sklearn/linear_model/stochastic_gradient.py | 2 | 40489 | # Authors: Peter Prettenhofer <peter.prettenhofer@gmail.com> (main author)
# Mathieu Blondel (partial_fit support)
#
# License: BSD Style.
"""Classification and regression using Stochastic Gradient Descent (SGD)."""
import numpy as np
import scipy.sparse as sp
from abc import ABCMeta, abstractmethod
import w... | bsd-3-clause |
MKLab-ITI/reveal-user-classification | reveal_user_classification/reveal/utility.py | 1 | 31544 | __author__ = 'Georgios Rizos (georgerizos@iti.gr)'
import time
import json
import itertools
import datetime
import numpy as np
import scipy.sparse as spsp
from sklearn.preprocessing import normalize
import networkx as nx
from networkx.algorithms.link_analysis import pagerank_scipy
from collections import OrderedDict, ... | apache-2.0 |
depet/scikit-learn | sklearn/cross_validation.py | 1 | 49981 | """
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
from... | bsd-3-clause |
brightchen/h2o-3 | h2o-py/h2o/h2o.py | 1 | 78121 | import warnings
warnings.simplefilter('always', DeprecationWarning)
import os
import itertools
import functools
import os.path
import re
import urllib
import urllib2
import imp
import tabulate
from connection import H2OConnection
from job import H2OJob
from expr import ExprNode
from frame import H2OFrame, _py_tmp_key, ... | apache-2.0 |
sphinx-gallery/sphinx-gallery | sphinx_gallery/gen_rst.py | 1 | 40601 | # -*- coding: utf-8 -*-
# Author: Óscar Nájera
# License: 3-clause BSD
"""
RST file generator
==================
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'.
"""
from __future__ import division, print_function, absolute_impor... | bsd-3-clause |
ADicksonLab/wepy | src/wepy/analysis/network.py | 1 | 52176 | """Module that allows for imposing a kinetically connected network
structure of weighted ensemble simulation data.
"""
from collections import defaultdict
from copy import deepcopy
import gc
import numpy as np
import networkx as nx
from wepy.analysis.transitions import (
transition_counts,
counts_d_to_matrix... | mit |
Karel-van-de-Plassche/QLKNN-develop | qlknn/NNDB/model.py | 1 | 67000 | import inspect
import os
import sys
import json
import subprocess
import socket
import re
import traceback
import operator
from warnings import warn
from functools import reduce
from itertools import chain
from collections import OrderedDict
import itertools
import copy
import numpy as np
import pandas as pd
from peew... | mit |
AndKe/MAVProxy | MAVProxy/tools/MAVExplorer.py | 1 | 34188 | #!/usr/bin/env python
from __future__ import print_function
'''
log analysis program
Andrew Tridgell December 2014
'''
import copy
import sys
import time
import os
import fnmatch
import threading
import shlex
from math import *
from MAVProxy.modules.lib import multiproc
from MAVProxy.modules.lib import rline
from MA... | gpl-3.0 |
antmd/graph-tool | src/graph_tool/centrality/__init__.py | 2 | 42040 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
#
# graph_tool -- a general graph manipulation python module
#
# Copyright (C) 2006-2015 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by... | gpl-3.0 |
xuwei0455/hedge | bin/ctaBackTesting.py | 1 | 32917 | # -*- coding: utf-8 -*-
"""
本文件中包含的是CTA模块的回测引擎，回测引擎的API和CTA引擎一致，
可以使用和实盘相同的代码进行回测。
"""
from __future__ import division
from collections import OrderedDict
from datetime import datetime, timedelta
from itertools import product
import pymongo
from vnpy.engine.cta.ctaBase import CtaTickData, StopOrder
from vnpy.engine... | mit |
manterd/myPhyloDB | functions/analysis/wgcna_graphs.py | 1 | 53496 | import datetime
from django.http import HttpResponse
import logging
import numpy as np
from natsort import natsorted
import pandas as pd
from pyper import *
from PyPDF2 import PdfFileReader, PdfFileMerger
import json
import sys
import functions
reload(sys)
sys.setdefaultencoding('utf8')
LOG_FILENAME = 'error_log.tx... | gpl-3.0 |
alashkov83/md_utils | multigraph_tk.py | 1 | 31965 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""Created on Tue Oct 18 14:38:07 2016.
@author: lashkov
"""
import os.path
import random
import re
import sys
import tkinter as tk
from math import factorial
from tkinter.filedialog import askopenfilename
from tkinter.filedialog import asksaveasfilename
from tkinter.me... | gpl-3.0 |
adwaitjog/mafia | aerialvision/guiclasses.py | 2 | 120821 | #!/usr/bin/env python
# Copyright (C) 2009 by Aaron Ariel, Wilson W. L. Fung, Tor M. Aamodt, Andrew
# Turner and the University of British Columbia, Vancouver,
# BC V6T 1Z4, All Rights Reserved.
#
# THIS IS A LEGAL DOCUMENT BY DOWNLOADING GPGPU-SIM, YOU ARE AGREEING TO THESE
# TERMS AND CONDITIONS.
#
# THIS SOFTWA... | gpl-3.0 |
agiovann/CalBlitz | calblitz/granule_cells/utils_granule.py | 1 | 44647 | # -*- coding: utf-8 -*-
"""
Created on Tue Feb 16 17:56:14 2016
@author: agiovann
"""
import os
import cv2
import h5py
import numpy as np
import pylab as pl
from glob import glob
# import ca_source_extraction as cse
import calblitz as cb
from scipy import signal
import scipy
import sys
from ipyparallel import Client
f... | gpl-3.0 |
vortex-ape/scikit-learn | sklearn/tests/test_pipeline.py | 5 | 35854 | """
Test the pipeline module.
"""
from distutils.version import LooseVersion
from tempfile import mkdtemp
import shutil
import time
import pytest
import numpy as np
from scipy import sparse
from sklearn.externals.six.moves import zip
from sklearn.utils.testing import assert_raises
from sklearn.utils.testing import as... | bsd-3-clause |
hhbyyh/spark | python/pyspark/sql/tests/test_pandas_udf_scalar.py | 4 | 34264 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
danielvdende/incubator-airflow | airflow/www/views.py | 1 | 111409 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/tseries/tdi.py | 1 | 32271 | """ implement the TimedeltaIndex """
from datetime import timedelta
import numpy as np
from pandas.core.common import (ABCSeries, _TD_DTYPE, _INT64_DTYPE,
_maybe_box,
_values_from_object, isnull,
is_integer, is_float)
from ... | gpl-2.0 |
jimsrc/seatos | shared_lib/shared_funcs_test.py | 1 | 37449 | from numpy import *
from pylab import *
from datetime import datetime, time, timedelta
import numpy as np
import console_colors as ccl
from scipy.io.netcdf import netcdf_file
from ShiftTimes import *
import os
import matplotlib.patches as patches
import matplotlib.transforms as transforms
#from read_NewTable import ts... | mit |
RJT1990/pyflux | pyflux/garch/segarchm.py | 1 | 36692 | import sys
if sys.version_info < (3,):
range = xrange
import numpy as np
import pandas as pd
import scipy.stats as ss
import scipy.special as sp
from .. import families as fam
from .. import output as op
from .. import tests as tst
from .. import tsm as tsm
from .. import gas as gas
from .. import data_check as d... | bsd-3-clause |
Chiroptera/QCThesis | MyML/EAC/eac.py | 3 | 32661 | # -*- coding: utf-8 -*-
"""
Created on 10-04-2015
@author: Diogo Silva
Evidence accumulation clustering. This module aims to include all
features of the Matlab toolbox plus addressing NxK co-association
matrices.
TODO:
- clustering of non-square co-association matrix
- link everything
- add sanity checks on number o... | mit |
jld23/saspy | saspy/sasdata.py | 1 | 47921 | #
# Copyright SAS Institute
#
# Licensed under the Apache License, Version 2.0 (the License);
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing... | apache-2.0 |
DSSG-paratransit/main_repo | Access_Analysis_Project/Scripts/4moDeadheadResultsToCsvParalleled.py | 1 | 961533 | import multiprocessing as mp
import numpy as np
import pandas as pd
import os
def findZeroes(row, numRows):
os.system(['clear', 'cls'][os.name == 'nt'])
print row
print str(float(row.name) / numRows * 100) + '%' + ' done'
busRun = data[(data['ServiceDate'] == row[0]) & (data['Run'] == row[1])]
if ... | agpl-3.0 |
epierson9/multiphenotype_methods | general_autoencoder.py | 1 | 32775 | import numpy as np
from multiphenotype_utils import (get_continuous_features_as_matrix, add_id, remove_id_and_get_mat,
partition_dataframe_into_binary_and_continuous, divide_idxs_into_batches)
import pandas as pd
import tensorflow as tf
from dimreducer import DimReducer
import time
from scipy.stats import pearsonr... | mit |
drammock/mne-python | mne/tests/test_evoked.py | 4 | 32784 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
import os.path as op
import pickle
import numpy as np
fr... | bsd-3-clause |
lnls-fac/apsuite | apsuite/lattice_errors.py | 1 | 37194 |
import numpy as _np
import matplotlib.pyplot as _plt
import scipy.stats as _scystat
import pyaccel as _pyaccel
import lnls as _lnls
ERRORTYPES = ('x','y','roll','excit','k_dip')
def generate_errors(acc, mags=None, girder=None, fam_data=None,
nr_mach=20, cutoff=1, rndtype='gauss', seed=42424242):
"""Gene... | mit |
gengliangwang/spark | python/pyspark/pandas/strings.py | 1 | 71365 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
RJT1990/pyflux | pyflux/arma/arma.py | 1 | 41322 | import sys
if sys.version_info < (3,):
range = xrange
import numpy as np
import pandas as pd
import scipy.stats as ss
import scipy.special as sp
from .. import families as fam
from .. import output as op
from .. import tests as tst
from .. import tsm as tsm
from .. import data_check as dc
from .arma_recursions i... | bsd-3-clause |
lukeiwanski/tensorflow-opencl | tensorflow/contrib/learn/python/learn/estimators/dnn_test.py | 2 | 55713 | # Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
marcocaccin/scikit-learn | sklearn/metrics/pairwise.py | 1 | 45783 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck ... | bsd-3-clause |
flightgong/scikit-learn | sklearn/decomposition/dict_learning.py | 2 | 43124 | """ Dictionary learning
"""
from __future__ import print_function
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
from math import sqrt, floor, ceil
import numpy as np
from scipy import linalg
from numpy.lib.stride_tricks import as_strided
f... | bsd-3-clause |
chrhartm/pg_tools | pg_tools.py | 1 | 31558 | import sqlalchemy
import collections
import os
import sys
import time
import subprocess
import luigi
import luigi.target
from luigi import configuration
import logging
import pandas.io.sql
class PgSQLDatabase(pandas.io.sql.SQLDatabase):
"""
This class is modified from util.py in https://github.com/dssg/drain/... | mit |
antoinecarme/pyaf | pyaf/CodeGen/TS_CodeGen_Objects.py | 1 | 47821 | # Copyright (C) 2016 Antoine Carme <Antoine.Carme@Laposte.net>
# All rights reserved.
# This file is part of the Python Automatic Forecasting (PyAF) library and is made available under
# the terms of the 3 Clause BSD license
import sys
import string
import random
from sqlalchemy.engine import reflection
import sqla... | bsd-3-clause |
Erotemic/plottool | plottool_ibeis/nx_helpers.py | 1 | 65069 | # -*- coding: utf-8 -*-
"""
Helpers for graph plotting
References:
http://www.graphviz.org/content/attrs
http://www.graphviz.org/doc/info/attrs.html
Ignore:
http://www.graphviz.org/pub/graphviz/stable/windows/graphviz-2.38.msi
pip uninstall pydot
pip uninstall pyparsing
pip install -Iv https:/... | apache-2.0 |
SmokinCaterpillar/pypet | pypet/tests/unittests/storage_test.py | 1 | 36547 | __author__ = 'Robert Meyer'
import os
import numpy as np
import pandas as pd
from scipy import sparse as spsp
import tables as pt
from pypet import Trajectory, Parameter, load_trajectory, ArrayParameter, SparseParameter, \
SparseResult, Result, NNGroupNode, ResultGroup, ConfigGroup, DerivedParameterGroup, \
... | bsd-3-clause |
hande-qmc/hande | tools/pyhande/tests/test_dmqmc.py | 1 | 37159 | """Tests for dmqmc.py."""
import unittest
import copy
import pandas as pd
import numpy as np
import pyhande.dmqmc as dmqmc
import tests.create_mock_df as create_mock_df
class TestAnalyseObservables(unittest.TestCase):
"""Test dmqmc.analyse_observables."""
def setUp(self):
# Create mock pandas datafra... | lgpl-2.1 |
AutonomyLab/deep_intent | code/autoencoder_model/scripts/sigmoid_classifier.py | 1 | 35476 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from matplotlib.pyplot import axes
import hickle as hkl
import numpy as np
np.random.seed(2 ** 10)
import tensorflow as tf
from keras import backend as K
K.set_image_dim_ordering('tf')
from keras import regul... | bsd-3-clause |
pydata/xarray | xarray/tests/test_computation.py | 1 | 62865 | import functools
import operator
import pickle
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
import pytest
from numpy.testing import assert_allclose, assert_array_equal
import xarray as xr
from xarray.core.alignment import broadcast
from xarray.core.computation import (
_UFuncS... | apache-2.0 |
maheshakya/scikit-learn | sklearn/svm/classes.py | 2 | 35065 | import numpy as np
from .base import _fit_liblinear, BaseSVC, BaseLibSVM
from ..base import BaseEstimator, RegressorMixin
from ..linear_model.base import LinearClassifierMixin, SparseCoefMixin, \
LinearModel
from ..feature_selection.from_model import _LearntSelectorMixin
from ..utils import check_array, check_X_y
... | bsd-3-clause |
airbnb/caravel | superset/models/core.py | 1 | 45677 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
cjayb/mne-python | mne/preprocessing/ica.py | 1 | 113755 | # -*- coding: utf-8 -*-
#
# Authors: Denis A. Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Juergen Dammers <j.dammers@fz-juelich.de>
#
# License: BSD (3-clause)
from inspect import isfunction
from collections import namedtuple
from copy import deepcopy
from... | bsd-3-clause |
chrisburr/scikit-learn | sklearn/linear_model/coordinate_descent.py | 1 | 76410 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
from abc import ABCMeta, abstractmethod
import n... | bsd-3-clause |
buguen/pylayers | pylayers/util/geomutil.py | 1 | 154830 | # -*- coding:Utf-8 -*-
"""
.. currentmodule:: pylayers.util.geomutil
=================================================
Geometry Module (:mod:`pylayers.util.geomutil`)
================================================
Geomview Class
==============
.. autosummary::
:toctree: generated/
Geomview.__init__
Geomview.s... | lgpl-3.0 |
shoyer/xray | xarray/core/common.py | 1 | 42259 | from collections import OrderedDict
from contextlib import suppress
from textwrap import dedent
from typing import (
Any, Callable, Hashable, Iterable, Iterator, List, Mapping, MutableMapping,
Optional, Tuple, TypeVar, Union)
import numpy as np
import pandas as pd
from . import dtypes, duck_array_ops, formatt... | apache-2.0 |
fhorinek/MotionLog | psychosonda_bt_ng192/utils/measConvertAndPlot.py | 1 | 34436 | #!/usr/bin/python
import sys
import os
import ntpath
import struct
import argparse
import ConfigParser
import Tkinter
import FileDialog
import matplotlib
import matplotlib.image as mplimage
from bdfExport import BDFexport
import Tkinter, tkFileDialog
from pylab import *
csvDirectoryName = ""
path = ""
defaultPatientI... | gpl-2.0 |
idies/pyJHTDB | pyJHTDB/test.py | 1 | 37165 | ########################################################################
#
# Copyright 2014 Johns Hopkins University
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache... | apache-2.0 |
jaeilepp/mne-python | mne/viz/epochs.py | 1 | 69901 | """Functions to plot epochs data."""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.f... | bsd-3-clause |
arokem/scipy | scipy/signal/ltisys.py | 1 | 124380 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Apr 2011: Jeffrey Armstrong <jeff@approximatrix.co... | bsd-3-clause |
ligovirgo/seismon | seismon/utils.py | 1 | 52057 | #!/usr/bin/python
import os, sys, code, glob, optparse, shutil, warnings, matplotlib, pickle, math, copy, pickle, time
import numpy as np
import scipy.signal, scipy.stats, scipy.fftpack
from collections import namedtuple
from datetime import datetime, timedelta
from lxml import etree
import astropy.time
from astropy ... | gpl-3.0 |
rabrahm/ceres | pucheros/pucherospipe.py | 1 | 41255 | import sys
import matplotlib
matplotlib.use("Agg")
from pylab import *
base = '../'
sys.path.append(base+"utils/Correlation")
sys.path.append(base+"utils/OptExtract/")
sys.path.append(base+"utils/GLOBALutils")
baryc_dir= base+'utils/SSEphem/'
sys.path.append(baryc_dir)
ephemeris='DEc403'
import matplotlib.pyplot a... | mit |
toobaz/pandas | pandas/plotting/_matplotlib/converter.py | 1 | 37142 | import datetime as pydt
from datetime import datetime, timedelta
import warnings
from dateutil.relativedelta import relativedelta
import matplotlib.dates as dates
from matplotlib.ticker import AutoLocator, Formatter, Locator
from matplotlib.transforms import nonsingular
import matplotlib.units as units
import numpy as... | bsd-3-clause |
ozak/folium | folium/folium.py | 1 | 42635 | # -*- coding: utf-8 -*-
"""
Folium
-------
Make beautiful, interactive maps with Python and Leaflet.js
"""
from __future__ import absolute_import
from __future__ import print_function
from __future__ import division
import codecs
import functools
import json
from uuid import uuid4
from jinja2 import Environment, P... | mit |
css-lucas/GAT | gat/core/sna/sna.py | 1 | 39605 | import tempfile
import matplotlib.pyplot as plt
import networkx as nx
import numpy as np
import xlrd
from networkx.algorithms import bipartite as bi
from networkx.algorithms import centrality
from itertools import product
from collections import defaultdict
from flask import jsonify
import pandas as pd
import datetime
... | mit |
dsm054/pandas | pandas/tests/io/formats/test_to_html.py | 1 | 49394 | # -*- coding: utf-8 -*-
import re
from textwrap import dedent
from datetime import datetime
from distutils.version import LooseVersion
import pytest
import numpy as np
import pandas as pd
from pandas import compat, DataFrame, MultiIndex, option_context, Index
from pandas.compat import u, lrange, StringIO
from pandas.... | bsd-3-clause |
magne-max/zipline-ja | zipline/testing/fixtures.py | 1 | 47790 | import sqlite3
from unittest import TestCase
from contextlib2 import ExitStack
from logbook import NullHandler, Logger
from six import with_metaclass, iteritems
from toolz import flip
import pandas as pd
import responses
from .core import (
create_daily_bar_data,
create_minute_bar_data,
tmp_dir,
)
from ..... | apache-2.0 |
humdings/zipline | tests/pipeline/test_filter.py | 2 | 34156 | """
Tests for filter terms.
"""
from functools import partial
from itertools import product
from operator import and_
from toolz import compose
from numpy import (
arange,
argsort,
array,
eye,
float64,
full,
inf,
isfinite,
nan,
nanpercentile,
ones,
ones_like,
putmask... | apache-2.0 |
tbarbette/clickwatcher | npf/grapher.py | 1 | 84538 | import io
import math
import re
import natsort
from orderedset._orderedset import OrderedSet
import copy
import traceback
from collections import OrderedDict
from typing import List
import numpy as np
from pygtrie import Trie
from npf.types import dataset
from npf.types.dataset import Run, XYEB, group_val
from npf.va... | gpl-3.0 |
jhseu/tensorflow | tensorflow/tools/compatibility/tf_upgrade_v2_test.py | 1 | 100321 | # Lint as: python2, python3
# Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
... | apache-2.0 |
TissueMAPS/TmLibrary | tmlib/workflow/jterator/api.py | 1 | 34660 | # TmLibrary - TissueMAPS library for distibuted image analysis routines.
# Copyright (C) 2016, 2018 University of Zurich
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version ... | agpl-3.0 |
CGATOxford/CGATPipelines | obsolete/pipeline_annotations.py | 1 | 90231 | """===================
Annotation pipeline
===================
The annotation pipeline imports various third party annotations
or creates them for use in other pipelines.
The purpose of this pipeline is to automate and standardize the
way we retrieve and build genomic annotations but also to allow
sharing of annotati... | mit |
mcopik/Elemental | python/lapack_like/spectral.py | 1 | 57961 | #
# Copyright (c) 2009-2015, Jack Poulson
# All rights reserved.
#
# This file is part of Elemental and is under the BSD 2-Clause License,
# which can be found in the LICENSE file in the root directory, or at
# http://opensource.org/licenses/BSD-2-Clause
#
from ..core import *
from ..blas_like import Copy, Entry... | bsd-3-clause |
clarkfitzg/xray | xray/conventions.py | 1 | 34675 | from datetime import datetime
import re
import traceback
import warnings
import numpy as np
import pandas as pd
from collections import defaultdict
from pandas.tslib import OutOfBoundsDatetime
from .core import indexing, ops, utils
from .core.formatting import format_timestamp, first_n_items
from .core.variable impor... | apache-2.0 |
ritviksahajpal/pygeoutil | pygeoutil/util.py | 1 | 53783 | import math
import os
import errno
import pdb
import datetime
import sys
import calendar
import subprocess
import netCDF4
import rasterio
import xarray as xr
import numpy as np
import pandas as pd
from skimage.measure import block_reduce
from tqdm import tqdm
from . import rgeo
# Ignore divide by 0 errors.
np.seterr... | mit |
MSeifert04/astropy | astropy/stats/funcs.py | 1 | 60158 | # Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
This module contains simple statistical algorithms that are
straightforwardly implemented as a single python function (or family of
functions).
This module should generally not be used directly. Everything in
`__all__` is imported into `astropy.stats... | bsd-3-clause |
vdrhtc/Measurement-automation | lib3/core/drivers/spectrum_m4x.py | 1 | 48676 | """
We are using
Spectrum m4x2212-x4
https://spectrum-instrumentation.com/en/m4x2212-x4
manual:
https://spectrum-instrumentation.com/sites/default/files/download/m4i_m4x_22xx_manual_english.pdf
datasheet:
https://spectrum-instrumentation.com/sites/default/files/download/m4x22_datasheet_english.pdf
"""
# Standard lib... | gpl-3.0 |
ebrahimraeyat/civilTools | applications/section/pre/sections.py | 1 | 76816 | import numpy as np
import matplotlib
matplotlib.use('Qt5Agg')
import matplotlib.pyplot as plt
from pre import pre
# from post import post
# TODO: ensure dimensions are floats
class Geometry:
"""Parent class for a cross-section geometry input.
Provides an interface for the user to specify the geometry defini... | gpl-3.0 |
JamesPHoughton/pysd | pysd/py_backend/external.py | 1 | 34879 | """
These classes are a collection of the needed tools to read external data.
The External type objects created by these classes are initialized before
the Stateful objects by functions.Model.initialize.
"""
import re
import os
import warnings
import pandas as pd # TODO move to openpyxl
import numpy as np
import xarr... | mit |
mdaal/KIDs-DAQ-75uW | Measurement_Managers.py | 1 | 59697 | import Instruments
import Fridge_Interfaces
import os, io, datetime, time
import logging
import numpy as np # developed with version 1.10.4
import scipy as sp #developed with version 0.17.0
from scipy import signal
import tables
import matplotlib as mpl
import matplotlib.pyplot as plt
import contextlib
import KAM
da... | gpl-3.0 |
GuessWhoSamFoo/pandas | pandas/io/formats/style.py | 1 | 46520 | """
Module for applying conditional formatting to
DataFrames and Series.
"""
from collections import defaultdict
from contextlib import contextmanager
import copy
from functools import partial
from itertools import product
from uuid import uuid1
import numpy as np
from pandas.compat import range
from pandas.util._de... | bsd-3-clause |
cython-testbed/pandas | pandas/tests/indexing/test_multiindex.py | 2 | 51189 | from warnings import catch_warnings
import pytest
import numpy as np
import pandas as pd
from pandas import (Panel, Series, MultiIndex, DataFrame,
Timestamp, Index, date_range)
from pandas.util import testing as tm
from pandas.errors import PerformanceWarning, UnsortedIndexError
from pandas.tests.in... | bsd-3-clause |
aeklant/scipy | scipy/signal/signaltools.py | 1 | 145636 | # Author: Travis Oliphant
# 1999 -- 2002
import operator
import math
import sys
import timeit
from scipy.spatial import cKDTree
from . import sigtools, dlti
from ._upfirdn import upfirdn, _output_len, _upfirdn_modes
from scipy import linalg, fft as sp_fft
from scipy.fft._helper import _init_nd_shape_and_axes
import nu... | bsd-3-clause |
petewarden/tensorflow | tensorflow/tools/compatibility/renames_v2.py | 1 | 61218 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
pywr/pywr | tests/test_parameters.py | 1 | 69326 | """
Test for individual Parameter classes
"""
from pyparsing import col
from pywr.core import Model, Timestep, Scenario, ScenarioIndex, Storage, Link, Input, Output, Catchment
from pywr.parameters import (Parameter, ArrayIndexedParameter, ConstantScenarioParameter,
ArrayIndexedScenarioMonthlyFactorsParameter, Mont... | gpl-3.0 |
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