repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
guilgautier/DPPy | dppy/finite_dpps.py | 1 | 44271 | # coding: utf8
""" Implementation of :py:class:`FiniteDPP` object which has 6 main methods:
- :py:meth:`~FiniteDPP.sample_exact`, see also :ref:`sampling DPPs exactly<finite_dpps_exact_sampling>`
- :py:meth:`~FiniteDPP.sample_exact_k_dpp`, see also :ref:`sampling k-DPPs exactly<finite_dpps_exact_sampling>`
- :py:meth:... | mit |
rafiqsaleh/VERCE | verce-hpc-pe/src/pyflex/window_selector.py | 2 | 39107 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Class managing the actual window selection process.
:copyright:
Lion Krischer (krischer@geophysik.uni-muenchen.de), 2014
:license:
GNU General Public License, Version 3
(http://www.gnu.org/copyleft/gpl.html)
"""
from __future__ import (absolute_import, divi... | mit |
deapplegate/wtgpipeline | CRNitschke/special_cases/blocked_blender.2.2_wjb-190.py | 1 | 114266 | #! /usr/bin/env python
from __future__ import division #3/2=1.5 and 3//2=1
#adam-does# blends cosmics and blocks them from being blended into stars
#adam-use # use with CRNitschke cosmics masking pipeline
import sys ; sys.path.append('/u/ki/awright/InstallingSoftware/pythons')
from import_tools import *
import astropy
... | mit |
johnmgregoire/JCAPdatavis | echem_stacked_tern5.py | 1 | 33699 | import matplotlib.cm as cm
import numpy
import pylab
import h5py, operator, copy, os, csv, sys
from echem_plate_fcns import *
from echem_plate_math import *
PyCodePath=os.path.split(os.path.split(os.path.realpath(__file__))[0])[0]
sys.path.append(os.path.join(PyCodePath,'ternaryplot'))
from myternaryutility import Ter... | bsd-3-clause |
jakobworldpeace/scikit-learn | sklearn/linear_model/logistic.py | 1 | 68761 | """
Logistic Regression
"""
# Author: Gael Varoquaux <gael.varoquaux@normalesup.org>
# Fabian Pedregosa <f@bianp.net>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Manoj Kumar <manojkumarsivaraj334@gmail.com>
# Lars Buitinck
# Simon Wu <s8wu@uwaterloo.ca>
# ... | bsd-3-clause |
TuanjieNew/Indel-Finder | indel_finder.py | 1 | 34134 | #!/usr/bin/env python
#fn: indel_finder.py
import os, getopt,sys
import re
import gzip
import numpy as np
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
def usage():
print("\nUsage: python indel_finder.py -r ref.fa(5' to 3') -t target.fa(5' to 3' with PAM) -1 1_S1_L001_R1_001.fastq(or fa... | mit |
agua/StarClusterDev | starcluster/balancers/sge/__init__.py | 1 | 31707 | #!/usr/bin/env python
import os
import time
import datetime
import traceback
import xml.dom.minidom
from starcluster import utils
from starcluster import static
from starcluster import exception
from starcluster.balancers import LoadBalancer
from starcluster.logger import log
SGE_STATS_DIR = os.path.join(static.STAR... | gpl-3.0 |
bluemellophone/ibeis_cnn | ibeis_cnn/models/abstract_models.py | 1 | 56038 | # -*- coding: utf-8 -*-
from __future__ import absolute_import, division, print_function
import functools
import six
import numpy as np
import utool as ut
from collections import namedtuple
from os.path import join, exists, dirname, basename
from six.moves import cPickle as pickle # NOQA
import warnings
import sklear... | apache-2.0 |
OpenDrift/opendrift | opendrift/models/basemodel.py | 1 | 212550 | # This file is part of OpenDrift.
#
# OpenDrift is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 2
#
# OpenDrift is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without ev... | gpl-2.0 |
MarcoDalFarra/semseg | DataGenerators.py | 1 | 48218 | from __future__ import absolute_import
from __future__ import print_function
import numpy as np
import IPython
import os
import threading
import warnings
import scipy.ndimage as ndi
import cv2
import random
try:
from PIL import Image as pil_image
except ImportError:
pil_image = None
from keras import backend... | mit |
JudoWill/glue | glue/core/roi.py | 1 | 34433 | from __future__ import absolute_import, division, print_function
from functools import wraps
import numpy as np
from matplotlib.patches import Polygon, Rectangle, Ellipse, PathPatch
from matplotlib.patches import Path as mplPath
from matplotlib.transforms import IdentityTransform, blended_transform_factory
import cop... | bsd-3-clause |
kklmn/xrt | xrt/backends/raycing/apertures.py | 1 | 37386 | # -*- coding: utf-8 -*-
"""
Apertures
---------
Module :mod:`apertures` defines rectangular and round apertures and a set of
coplanar rectangular apertures. Rectangular apertures may have one or more
defining edges. For example, a simple obstacle, like a beam stop block would
have one edge, a block of front-end slits ... | mit |
dssg/wikienergy | disaggregator/build/pandas/pandas/tseries/tests/test_timedeltas.py | 1 | 55479 | # pylint: disable-msg=E1101,W0612
from __future__ import division
from datetime import datetime, timedelta, time
import nose
from distutils.version import LooseVersion
import numpy as np
import pandas as pd
from pandas import (Index, Series, DataFrame, Timestamp, Timedelta, TimedeltaIndex, isnull, notnull,
... | mit |
yaukwankiu/armor | kmeans/clustering.py | 1 | 41341 | ###################################
# WORK IN PROGRESS
# ADAPTED FROM OLD clustering.py BASED ON THE CLASS weatherPattern.pattern2d
# NOTE: SINCE THIS CODE WAS INITIATED IN 2012, THE (i, j) are reversed
# AS FROM OTHER MODULES OF THE armor PACKAGE: HERE (i,j)=(x,y)
# AND WE USE ... | cc0-1.0 |
Quantipy/quantipy | quantipy/core/builds/excel/excel_painter.py | 1 | 116277 | # -*- coding: utf-8 -*-
'''
Created on 19 Nov 2014
@author: alasdaire
'''
import numpy as np
import pandas as pd
import quantipy as qp
from quantipy.core.cluster import Cluster
from quantipy.core.chain import Chain
from quantipy.core.helpers import functions as helpers
from quantipy.core.tools.dp.io import unicoder
f... | mit |
JeffHeard/terrapyn | geocms/drivers/spatialite.py | 1 | 38538 | # from ga_ows.views import wms, wfs
from django.db.models.loading import get_model
from django.utils.text import slugify
from uuid import uuid4
from zipfile import ZipFile
import json
from django.contrib.gis.geos import Polygon, GEOSGeometry
from django.core.files import File
import numpy
import os
from osgeo import os... | apache-2.0 |
phobson/statsmodels | statsmodels/tsa/statespace/dynamic_factor.py | 1 | 57954 | """
Dynamic factor model
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
from warnings import warn
from statsmodels.compat.collections import OrderedDict
import numpy as np
import pandas as pd
from .kalman_filter import KalmanFilter, FilterResults
from... | bsd-3-clause |
ekostat/ekostat_calculator | core/quality_factors.py | 1 | 33156 | # -*- coding: utf-8 -*-
"""
Created on Wed Jul 12 14:43:35 2017
@author: a001985
"""
import os
import core
import numpy as np
import pandas as pd
from functools import reduce
import re
###############################################################################
class ClassificationResult(dict):
"""
Class ... | mit |
afronski/playground-notes | scalable-machine-learning/solutions/ML_lab3_linear_reg_student.py | 1 | 43738 |
# coding: utf-8
# 
# # **Linear Regression Lab**
# #### This lab covers a common supervised learning pipeline, using a subset of the [Million Song Dataset](http://labrosa.ee.columbia.edu/millionsong/) from the [UCI Machine Learning Repos... | mit |
rs2/pandas | pandas/tests/arrays/test_datetimelike.py | 1 | 39389 | from typing import Type, Union
import numpy as np
import pytest
import pytz
from pandas._libs import OutOfBoundsDatetime
from pandas.compat.numpy import np_version_under1p18
import pandas as pd
import pandas._testing as tm
from pandas.core.arrays import DatetimeArray, PeriodArray, TimedeltaArray
from pandas.core.ind... | bsd-3-clause |
dssg/wikienergy | disaggregator/build/pandas/pandas/io/stata.py | 1 | 72166 | """
Module contains tools for processing Stata files into DataFrames
The StataReader below was originally written by Joe Presbrey as part of PyDTA.
It has been extended and improved by Skipper Seabold from the Statsmodels
project who also developed the StataWriter and was finally added to pandas in
an once again impro... | mit |
geophysics/mtpy | mtpy/gui/occam1d_gui.py | 1 | 55610 | # -*- coding: utf-8 -*-
"""
Occam 1D
-----------------
All encompassing ploting data, model and model response.
JP 2015
"""
#
from PyQt4 import QtCore, QtGui
import mtpy.modeling.occam1d as occam1d
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt... | gpl-3.0 |
GaloMALDONADO/motorg | motorog/dynTasks2.py | 1 | 51861 | import pinocchio as se3
import numpy as np
import paths as lp
import robot_config as rconf
import mocap_config as mconf
from hqp.wrapper import Wrapper
from trajectory_extractor import References
import ucm
import plot_tools
import csv
import indexes
import plotTasks
from hqp.viewer_utils import Viewer
import matplo... | gpl-3.0 |
cleinias/Homeo | src/Simulator/HomeoGeneralGUI.py | 1 | 59437 | '''
Provides a general interface to control a Homeostat simulation including an unlimited number of units.
It can start and stop a simulation from a GUI, as well as save and graph the simulation's data.
Created on May 5, 2013
@author: stefano
'''
from PyQt4.QtCore import *
from PyQt4.QtGui import *
from Core.Homeost... | gpl-3.0 |
jesserobertson/pynoddy | pynoddy/output.py | 1 | 77926 | '''Noddy output file analysis
Created on 24/03/2014
@author: Florian Wellmann, Sam Thiele
'''
import os
import numpy as np
import pynoddy
class NoddyOutput(object):
"""Class definition for Noddy output analysis"""
def __init__(self, output_name):
"""Noddy output analysis
**Argum... | gpl-2.0 |
maheshakya/scikit-learn | sklearn/tree/tree.py | 1 | 34714 | """
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | bsd-3-clause |
mikegraham/dask | dask/array/core.py | 1 | 108393 | from __future__ import absolute_import, division, print_function
from bisect import bisect
from collections import Iterable, MutableMapping
from collections import Iterator
from functools import partial, wraps
import inspect
from itertools import product
from numbers import Number
import operator
from operator import ... | bsd-3-clause |
jim-pansn/graph-tool | src/graph_tool/search/__init__.py | 1 | 58109 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
#
# graph_tool -- a general graph manipulation python module
#
# Copyright (C) 2006-2015 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by... | gpl-3.0 |
dsm054/pandas | pandas/core/arrays/period.py | 1 | 36811 | # -*- coding: utf-8 -*-
from datetime import timedelta
import operator
import numpy as np
from pandas import compat
from pandas.compat.numpy import function as nv
from pandas._libs.tslib import NaT, iNaT
from pandas._libs.tslibs.period import (
Period, IncompatibleFrequency, DIFFERENT_FREQ_INDEX,
get_period_f... | bsd-3-clause |
geoscixyz/em_examples | em_examples/HarmonicVMDCylWidget.py | 1 | 31628 | from __future__ import print_function
from __future__ import absolute_import
from __future__ import unicode_literals
from ipywidgets import *
from SimPEG import Mesh, Maps, EM, Utils
# from pymatsolver import PardisoSolver
import matplotlib.pyplot as plt
import numpy as np
from PIL import Image
from scipy.constants im... | mit |
mguerrap/tydal | tydal/module1_fancy_graphs.py | 1 | 30059 | #module1_fancy_graphs create graphs with moon and text for module 1
#Written by: Amie Adams
#Import relevant packages
import os
import numpy as np
import pandas as pd
from datetime import date
from matplotlib.offsetbox import TextArea, DrawingArea, OffsetImage, AnnotationBbox
import matplotlib.image as IM
import matplo... | mit |
nixingyang/Kaggle-Face-Verification | Quora Question Pairs/solution_shallow_learning.py | 1 | 31293 | from __future__ import absolute_import, division, print_function
import os
import glob
import numpy as np
import pandas as pd
import lightgbm as lgb
from collections import Counter, defaultdict
from difflib import SequenceMatcher
from joblib import Parallel, delayed
from nltk import pos_tag, word_tokenize
f... | mit |
saullocastro/pyNastran | pyNastran/converters/dev/abaqus/abaqus.py | 1 | 34422 | """
Defines the Abaqus class
"""
from __future__ import print_function
import numpy as np
from pyNastran.utils.log import get_logger2
from pyNastran.converters.dev.abaqus.abaqus_cards import Material, Part, SolidSection
def read_abaqus(abaqus_inp_filename, log=None, debug=False):
"""reads an abaqus model"""
mo... | lgpl-3.0 |
openego/dingo | ding0/grid/lv_grid/build_grid.py | 1 | 30545 | """This file is part of DING0, the DIstribution Network GeneratOr.
DING0 is a tool to generate synthetic medium and low voltage power
distribution grids based on open data.
It is developed in the project open_eGo: https://openegoproject.wordpress.com
DING0 lives at github: https://github.com/openego/ding0/
The docume... | agpl-3.0 |
mvictor212/hmmlearn | hmmlearn/mixhmm.py | 1 | 67910 | # Mixtures of Hidden Markov Models
#
# Author: Mason Victors <mason.victors@gmail.com>
"""
The :mod:`hmmlearn.mixhmm` module implements mixtures of
hidden Markov models.
"""
import string
import cPickle
import numpy as np
import multiprocessing as mp
from copy import deepcopy
from sklearn.utils import check_random_... | bsd-3-clause |
evanbiederstedt/RRBSfun | epiphen/total_chrX.py | 2 | 32997 | import glob
import pandas as pd
import numpy as np
pd.set_option('display.max_columns', 50) # print all rows
import os
os.chdir("/gpfs/commons/home/biederstedte-934/evan_projects/correct_phylo_files")
normalB = glob.glob("binary_position_RRBS_normal_B_cell*")
mcell = glob.glob("binary_position_RRBS_NormalBCD19pCD27... | mit |
NixaSoftware/CVis | venv/lib/python2.7/site-packages/pandas/io/sql.py | 1 | 58681 | # -*- coding: utf-8 -*-
"""
Collection of query wrappers / abstractions to both facilitate data
retrieval and to reduce dependency on DB-specific API.
"""
from __future__ import print_function, division
from datetime import datetime, date, time
import warnings
import re
import numpy as np
import pandas._libs.lib as ... | apache-2.0 |
sebp/scikit-survival | tests/test_survival_svm.py | 1 | 32714 | from functools import partial
from os.path import dirname, join
import warnings
import numpy
from numpy.testing import assert_array_almost_equal, assert_array_equal
import pytest
from sklearn.decomposition import KernelPCA
from sklearn.exceptions import ConvergenceWarning
from sklearn.metrics import mean_squared_error... | gpl-3.0 |
leggitta/mne-python | mne/io/base.py | 1 | 90477 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
# Marijn van Vliet <w.m.vanvli... | bsd-3-clause |
Naereen/notebooks | Manual_implementation_of_the_Mersenne_twister_PseudoRandom_Number_Generator__PRNG_.py | 1 | 60434 |
# coding: utf-8
# # Table of Contents
# <p><div class="lev1 toc-item"><a href="#Manual-implementation-of-the-Mersenne-twister-PseudoRandom-Number-Generator-(PRNG)" data-toc-modified-id="Manual-implementation-of-the-Mersenne-twister-PseudoRandom-Number-Generator-(PRNG)-1"><span class="toc-item-num">1 </spa... | mit |
google/meterstick | metrics_test.py | 1 | 57589 | # Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | apache-2.0 |
hoburg/gpkit | gpkit/solution_array.py | 1 | 36007 | """Defines SolutionArray class"""
import re
import difflib
from operator import sub
import warnings as pywarnings
import pickle
import gzip
import pickletools
import numpy as np
from .nomials import NomialArray
from .small_classes import DictOfLists, Strings
from .small_scripts import mag, try_str_without
from .repr_co... | mit |
bdestombe/flopy-1 | flopy/mbase.py | 1 | 47278 | """
mbase module
This module contains the base model class from which
all of the other models inherit from.
"""
from __future__ import print_function
import sys
import os
import subprocess as sp
import shutil
import threading
if sys.version_info > (3, 0):
import queue as Queue
else:
impo... | bsd-3-clause |
NicovincX2/Battleship | naval_battle.py | 1 | 73346 | #! /usr/bin/ython
# -*- coding: utf-8 -*-
"""naval_battle.py: Jeu de bataille navale. """
__version__='1.3.5'
import sys
import platform
import os
import time
import argparse # Add command-line arguments support
import ast # eval()
import math
import itertools
import operator
import string
import functools
# Vérifi... | gpl-3.0 |
mrlb05/Nifty4Gemini | nifty/pipeline/nifsUtils.py | 2 | 49025 | # MIT License
# Copyright (c) 2015, 2017 Marie Lemoine-Busserolle
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy... | mit |
alphaBenj/zipline | tests/test_assets.py | 1 | 57794 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
sauloal/cnidaria | scripts/venv/lib/python2.7/site-packages/pandas/core/categorical.py | 1 | 62243 | # pylint: disable=E1101,W0232
import numpy as np
from warnings import warn
import types
from pandas import compat, lib
from pandas.compat import u
from pandas.core.algorithms import factorize
from pandas.core.base import PandasObject, PandasDelegate
import pandas.core.common as com
from pandas.util.decorators import... | mit |
TissueMAPS/TmLibrary | tmlib/models/utils.py | 1 | 36986 | # TmLibrary - TissueMAPS library for distibuted image analysis routines.
# Copyright (C) 2016 Markus D. Herrmann, University of Zurich and Robin Hafen
# Copyright (C) 2018 University of Zurich
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Publi... | agpl-3.0 |
gdementen/xlwings | xlwings/_xlwindows.py | 1 | 40915 | import os
import sys
# Hack to find pythoncom.dll - needed for some distribution/setups (includes seemingly unused import win32api)
# E.g. if python is started with the full path outside of the python path, then it almost certainly fails
cwd = os.getcwd()
if not hasattr(sys, 'frozen'):
# cx_Freeze etc. will fail h... | bsd-3-clause |
ryandougherty/mwa-capstone | MWA_Tools/build/matplotlib/lib/matplotlib/cbook.py | 1 | 59364 | """
A collection of utility functions and classes. Many (but not all)
from the Python Cookbook -- hence the name cbook
"""
from __future__ import generators
import re, os, errno, sys, StringIO, traceback, locale, threading, types
import time, datetime
import warnings
import numpy as np
import numpy.ma as ma
from weakr... | gpl-2.0 |
microsoft/EconML | econml/iv/dml/_dml.py | 1 | 43123 | # Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.
"""Orthogonal IV for Heterogeneous Treatment Effects.
A Double/Orthogonal machine learning approach to estimation of heterogeneous
treatment effect with an endogenous treatment and an instrument. It
implements the DMLIV and ... | mit |
jseabold/statsmodels | statsmodels/stats/power.py | 4 | 52279 | # -*- coding: utf-8 -*-
#pylint: disable-msg=W0142
"""Statistical power, solving for nobs, ... - trial version
Created on Sat Jan 12 21:48:06 2013
Author: Josef Perktold
Example
roundtrip - root with respect to all variables
calculated, desired
nobs 33.367204205 33.367204205
effect 0.5 0.5
alpha 0.05 0.05... | bsd-3-clause |
jseabold/statsmodels | statsmodels/graphics/regressionplots.py | 5 | 43880 | '''Partial Regression plot and residual plots to find misspecification
Author: Josef Perktold
License: BSD-3
Created: 2011-01-23
update
2011-06-05 : start to convert example to usable functions
2011-10-27 : docstrings
'''
from statsmodels.compat.python import lrange, lzip
from statsmodels.compat.pandas import Appen... | bsd-3-clause |
Patrick-Cole/pygmi | pygmi/pfmod/iodefs.py | 1 | 43296 | # -----------------------------------------------------------------------------
# Name: iodefs.py (part of PyGMI)
#
# Author: Patrick Cole
# E-Mail: pcole@geoscience.org.za
#
# Copyright: (c) 2013 Council for Geoscience
# Licence: GPL-3.0
#
# This file is part of PyGMI
#
# PyGMI is free software:... | gpl-3.0 |
tensorflow/estimator | tensorflow_estimator/python/estimator/canned/linear_testing_utils.py | 1 | 84178 | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
Tobychev/tardis | tardis/gui/widgets.py | 2 | 52048 | import os
if os.environ.get('QT_API', None)=='pyqt':
from PyQt4 import QtGui, QtCore
elif os.environ.get('QT_API', None)=='pyside':
from PySide import QtGui, QtCore
else:
raise ImportError('QT_API was not set! Please exit the IPython console\n'
' and at the bash prompt use : \n\n export QT_API=pysid... | bsd-3-clause |
tejasckulkarni/hydrology | weather/wind_speed_had_mcmc.py | 1 | 38571 | __author__ = 'kiruba'
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import itertools
import pymc as pm
import scipy.stats as stats
from datetime import timedelta
from datetime import datetime
from pymc import TruncatedNormal
from pymc import Normal, Exponential
import matplotlib
# data = np.arr... | gpl-3.0 |
craffel/librosa | librosa/feature/spectral.py | 1 | 39829 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Spectral feature extraction"""
import numpy as np
import scipy
import scipy.signal
from .. import util
from .. import filters
from ..util.exceptions import ParameterError
from ..core.time_frequency import fft_frequencies
from ..core.audio import zero_crossings
from ..... | isc |
alexhege/Orbital-APSYNSIM | APSYNSIM_v1.3/SCRIPT/relicAPSYNSIM.py | 1 | 118724 | #############################################################################
#
# APSYNSIM: A real-time Aperture Synthesis Simulator
#
# Copyright (C) 2014 Ivan Marti-Vidal (Nordic ARC Node, OSO, Sweden)
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GN... | gpl-3.0 |
brianlorenz/COSMOS_IMACS_Redshifts | Emission_Fitting/FitEmission_MosaicByUsig.py | 1 | 41785 | #Fits an emission ine with a Gaussian and returns the amplitude, standard deviation, and continuum line
#Usage: run FitEmission.py 'a6' 4861 to fit the lines at rest wavelengths 6563 (Ha) for the a6 mask.
#Typing run FitEmission.py 'a6' 'HaNII' will fit all three lines around Ha simulaaneously
import nump... | mit |
chaubold/hytra | scripts/plot_probability_distribs.py | 1 | 30965 | # pythonpath modification to make hytra and empryonic available
# for import without requiring it to be installed
import os
import sys
sys.path.insert(0, os.path.abspath('..'))
# standard imports
import os.path as path
import getpass
import glob
import optparse
import socket
import time
import numpy as np
import h5py
... | mit |
zfrenchee/pandas | pandas/tests/reshape/merge/test_merge_asof.py | 1 | 38206 | import os
import pytest
import pytz
import numpy as np
import pandas as pd
from pandas import (merge_asof, read_csv,
to_datetime, Timedelta)
from pandas.core.reshape.merge import MergeError
from pandas.util import testing as tm
from pandas.util.testing import assert_frame_equal
class TestAsOfMerg... | bsd-3-clause |
lucidfrontier45/scikit-learn | sklearn/decomposition/dict_learning.py | 1 | 40383 | """ Dictionary learning
"""
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD
import time
import sys
import itertools
import warnings
from math import sqrt, floor, ceil
import numpy as np
from scipy import linalg
from numpy.lib.stride_tricks import as_strided
from ..base import BaseEstimator... | bsd-3-clause |
daniaki/Enrich2 | enrich2/selection/selection.py | 1 | 33123 | # Copyright 2016-2017 Alan F Rubin
#
# This file is part of Enrich2.
#
# Enrich2 is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
... | gpl-3.0 |
shoyer/xray | xarray/core/computation.py | 1 | 43339 | """
Functions for applying functions that act on arrays to xarray's labeled data.
"""
import functools
import itertools
import operator
from collections import Counter, OrderedDict
from distutils.version import LooseVersion
from typing import (
AbstractSet, Any, Callable, Iterable, List, Mapping, Optional, Sequence... | apache-2.0 |
ARudiuk/mne-python | mne/viz/utils.py | 1 | 40089 | """Utility functions for plotting M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | bsd-3-clause |
timothy-mcroy/mapper | draw_mapper_output.py | 1 | 52373 | # -*- coding: utf-8 -*-
'''
This file is part of the Python Mapper package, an open source tool
for exploration, analysis and visualization of data.
Copyright 2011–2014 by the authors:
Daniel Müllner, http://danifold.net
Aravindakshan Babu, anounceofpractice@hotmail.com
Python Mapper is distributed under the ... | gpl-2.0 |
aoifeboyle/tardis | tardis/io/config_reader.py | 1 | 42178 | # Module to read the rather complex config data
import logging
import os
import pprint
from astropy import constants, units as u
import numpy as np
import pandas as pd
import yaml
import tardis
from tardis.io.model_reader import read_density_file, \
calculate_density_after_time, read_abundances_file
from tardis.... | bsd-3-clause |
jhelie/cluster_lip | cluster_lip.py | 1 | 89320 | ################################################################################################################################################
# IMPORT MODULES
################################################################################################################################################
#import gene... | gpl-2.0 |
hrashk/sympy | sympy/plotting/plot.py | 1 | 62275 | """Plotting module for Sympy.
A plot is represented by the ``Plot`` class that contains a reference to the
backend and a list of the data series to be plotted. The data series are
instances of classes meant to simplify getting points and meshes from sympy
expressions. ``plot_backends`` is a dictionary with all the bac... | bsd-3-clause |
MJuddBooth/pandas | pandas/core/indexes/multi.py | 1 | 113651 | # pylint: disable=E1101,E1103,W0232
from collections import OrderedDict
import datetime
from sys import getsizeof
import warnings
import numpy as np
from pandas._libs import (
Timestamp, algos as libalgos, index as libindex, lib, tslibs)
import pandas.compat as compat
from pandas.compat import lrange, lzip, map, ... | bsd-3-clause |
evgchz/scikit-learn | sklearn/linear_model/ridge.py | 6 | 38630 | """
Ridge regression
"""
# Author: Mathieu Blondel <mathieu@mblondel.org>
# Reuben Fletcher-Costin <reuben.fletchercostin@gmail.com>
# Fabian Pedregosa <fabian@fseoane.net>
# Michael Eickenberg <michael.eickenberg@nsup.org>
# License: BSD 3 clause
from abc import ABCMeta, abstractmethod
impor... | bsd-3-clause |
losonczylab/Zaremba_NatNeurosci_2017 | losonczy_analysis_bundle/lab/figures/place_cell_figures.py | 1 | 100251 | """Figure generating functions to accompany placeCellAnalysis, used heavily by
analysis scripts
All functions should return either a figure or list of figures.
"""
import matplotlib.pyplot as plt
import numpy as np
import datetime
from copy import copy
import pandas as pd
import seaborn.apionly as sns
import itertools... | mit |
irap-omp/deconv3d | lib/run.py | 1 | 42027 | # coding=utf-8
# GENERAL PACKAGES ############################################################
import sys
import math
import numpy as np
import logging
from os.path import splitext
from math import log
from hyperspectral import HyperspectralCube as Cube
from matplotlib import pyplot as plot
logging.basicConfig(level=... | mit |
alicx1/Sushi | sushi.py | 1 | 36000 | #!/usr/bin/env python
import logging
import sys
from itertools import takewhile, izip
import numpy as np
import argparse
import chapters
import os
from time import time
import bisect
from common import SushiError, get_extension, format_time, ensure_static_collection
from demux import Timecodes, Demuxer
from keyframes ... | mit |
cajal/pipeline | python/pipeline/pupil.py | 1 | 82981 | """
This module is for pupil related tables and computation.
Current version is at 1.0.0 as of 10/29/2019
What's changed in this version:
1. Got rid of filter_config table
2. Added a functionality of removing tracking directory and its sub-directories if the job was not done completely
3. Method name changed from DLC_... | lgpl-3.0 |
awhite40/pymks | pymks/tools.py | 1 | 32188 | import matplotlib.colors as colors
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from mpl_toolkits.axes_grid1 import make_axes_locatable
from sklearn.learning_curve import learning_curve
from .stats import _auto_correlations
from .stats import _cross_correlations
import numpy as np
import warn... | mit |
iled/gsimcli | GSIMCLI/tools/grid.py | 1 | 40370 | # -*- coding: utf-8 -*-
"""
Class definitions to support grid and point-set objects, as defined in GSLIB_.
.. _GSLIB: http://www.gslib.com
Created on 12 de Out de 2013
@author: julio
"""
import os
import time
import bottleneck as bn
import numpy as np
import pandas as pd
from tools.utils import skip_lines, filenam... | gpl-3.0 |
gmarkall/numba | numba/tests/test_extending.py | 1 | 55333 | import math
import operator
import sys
import pickle
import multiprocessing
import ctypes
import warnings
from distutils.version import LooseVersion
import re
import numpy as np
from numba import njit, jit, vectorize, guvectorize, objmode
from numba.core import types, errors, typing, compiler, cgutils
from numba.core... | bsd-2-clause |
vidartf/hyperspy | hyperspy/signal.py | 1 | 157155 | # -*- coding: utf-8 -*-
# Copyright 2007-2016 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/image.py | 1 | 49347 | """
The image module supports basic image loading, rescaling and display
operations.
"""
import os
import warnings
import math
import numpy as np
from numpy import ma
from matplotlib import rcParams
import matplotlib.artist as martist
from matplotlib.artist import allow_rasterization
import matplotlib.colors as mco... | gpl-3.0 |
willgrass/pandas | pandas/core/panel.py | 1 | 56830 | """
Contains data structures designed for manipulating panel (3-dimensional) data
"""
# pylint: disable-msg=E1103
# pylint: disable-msg=W0231
# pylint: disable-msg=W0212
# pylint: disable-msg=W0621
import operator
import sys
import numpy as np
from pandas.core.groupby import GroupBy
from pandas.core.index import Ind... | bsd-3-clause |
georgebv/PyEVA | AppCore/PyEVA.py | 1 | 55099 | # Import UI
from MainWindow import Ui_MainWindow
from ParseDialog import Ui_Dialog as Ui_ParseDialog
from PlotSeriesDialog import Ui_Dialog as Ui_PlotSeriesDialog
from BlockMaximaDialog import Ui_Dialog as Ui_BlockMaximaDialog
from POTDialog import Ui_Dialog as Ui_POTDialog
from PlotExtremesDialog import Ui_Dialog as U... | gpl-3.0 |
evanbiederstedt/RRBSfun | trees/chrom_scripts/total_chr15.py | 2 | 32998 | import glob
import pandas as pd
import numpy as np
pd.set_option('display.max_columns', 50) # print all rows
import os
os.chdir("/gpfs/commons/home/biederstedte-934/evan_projects/correct_phylo_files")
normalB = glob.glob("binary_position_RRBS_normal_B_cell*")
mcell = glob.glob("binary_position_RRBS_NormalBCD19pCD27... | mit |
lfairchild/PmagPy | pmagpy/pmag.py | 1 | 477216 | from past.utils import old_div
import codecs
import numpy as np
import string
import sys
from numpy import random
from numpy import linalg
import os
import time
import math
import pandas as pd
from .mapping import map_magic
from pmagpy import contribution_builder as cb
from . import find_pmag_dir
from pmag_env import s... | bsd-3-clause |
simonsfoundation/CaImAn | caiman/source_extraction/cnmf/spatial.py | 1 | 42586 | #!/usr/bin/env python
"""
Created on Wed Aug 05 20:38:27 2015
# -*- coding: utf-8 -*-
@author: agiovann
"""
# noinspection PyCompatibility
from past.builtins import basestring
from past.utils import old_div
from builtins import zip
from builtins import map
from builtins import str
from builtins import range
import ... | gpl-2.0 |
jeffery-do/Vizdoombot | doom/lib/python3.5/site-packages/dask/array/core.py | 1 | 119688 | from __future__ import absolute_import, division, print_function
from bisect import bisect
from collections import Iterable, MutableMapping
from collections import Iterator
from functools import partial, wraps
import inspect
from itertools import product
from numbers import Number
import operator
from operator import ... | mit |
wronk/mne-python | mne/surface.py | 1 | 41238 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis A. Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
import os
from os import path as op
import sys
from struct import pack
from glob import glob
import numpy as... | bsd-3-clause |
gjermv/potato | sccs/gpx/gpxtricks.py | 1 | 33116 | # -*- coding: utf-8 -*-
"""
Created on Thu Nov 19 15:38:35 2015
@author: gjermund.vingerhagen
"""
from lxml import etree as etree
import utmconverter as utm
import algos as algos
import dtmdata as dtm
import pandas as pd
from datetime import datetime as dt
from timeit import default_timer as timer
from da... | gpl-2.0 |
jcmgray/autoray | autoray/lazy/core.py | 1 | 32177 | import operator
import threading
import functools
import itertools
import contextlib
import collections
import numpy as np
from ..autoray import (
get_lib_fn,
infer_backend,
get_dtype_name,
register_function,
astype,
)
_EMPTY_DICT = {}
class LazyArray:
"""A lazy array representing a shaped... | apache-2.0 |
rbharath/deepchem | examples/benchmark.py | 1 | 37611 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 18 15:53:27 2016
@author: Michael Wu
Benchmark test:
Giving classification performances of:
Random forest(rf), MultitaskDNN(tf),
RobustMultitaskDNN(tf_robust),
Logistic regression(logreg), IRV(irv)
Graph convolution(graphconv),
... | mit |
dimroc/tensorflow-mnist-tutorial | lib/python3.6/site-packages/matplotlib/tests/test_axes.py | 3 | 153764 | from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from six.moves import xrange
from itertools import chain
from distutils.version import LooseVersion
import io
from nose.tools import assert_equal, assert_raises, assert_false, assert_true
from nose.... | apache-2.0 |
pydata/xarray | xarray/core/accessor_str.py | 1 | 86337 | # The StringAccessor class defined below is an adaptation of the
# pandas string methods source code (see pd.core.strings)
# For reference, here is a copy of the pandas copyright notice:
# (c) 2011-2012, Lambda Foundry, Inc. and PyData Development Team
# All rights reserved.
# Copyright (c) 2008-2011 AQR Capital Man... | apache-2.0 |
ver228/tierpsy-tracker | tierpsy/features/open_worm_analysis_toolbox/utils.py | 1 | 37115 | # -*- coding: utf-8 -*-
"""
Support functions used in other modules.
Several, but not all, of the functions here are defined so we have functions
that are the equivalent of the same-named functions in Matlab, e.g. gausswin
"""
from __future__ import division
from itertools import groupby
import os
import sys
import ... | mit |
flohorovicic/pynoddy | pynoddy/experiment/topology_analysis.py | 1 | 92483 | # -*- coding: utf-8 -*-
"""
Created on Wed Jul 15 12:14:08 2015
@author: Sam Thiele
"""
import os
import numpy as np
import scipy as sp
import math
import pynoddy
from pynoddy.experiment.monte_carlo import MonteCarlo
from pynoddy.output import NoddyTopology
from pynoddy.output import NoddyOutput
from pynoddy.history ... | gpl-2.0 |
xuewei4d/scikit-learn | sklearn/model_selection/tests/test_search.py | 4 | 80478 | """Test the search module"""
from collections.abc import Iterable, Sized
from io import StringIO
from itertools import chain, product
from functools import partial
import pickle
import sys
from types import GeneratorType
import re
import numpy as np
import scipy.sparse as sp
import pytest
from sklearn.utils._testing... | bsd-3-clause |
nilsgrabbert/spark | python/pyspark/sql/dataframe.py | 4 | 73207 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
MIT-LCP/wfdb-python | wfdb/plot/plot.py | 1 | 30588 | import matplotlib.pyplot as plt
import numpy as np
import os
import pdb
from wfdb.io.record import Record, rdrecord
from wfdb.io._header import float_types
from wfdb.io._signal import downround, upround
from wfdb.io.annotation import Annotation
def plot_items(signal=None, ann_samp=None, ann_sym=None, fs=None,
... | mit |
Acehaidrey/incubator-airflow | airflow/providers/google/cloud/hooks/bigquery.py | 1 | 122955 | #
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not... | apache-2.0 |
cojacoo/echoRD_model | echoRD/hydro_tools.py | 1 | 49640 | #hydro_plot - some python functions for hydrological visualisation
#(cc) jackisch@kit.edu
import numpy as np
import pandas as pd
import scipy as sp
import matplotlib.pyplot as plt
import matplotlib
#TOOLS
# a simple progress bar
import sys, time
try:
from IPython.display import clear_output
have_ipython = True... | gpl-3.0 |
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