repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
Erotemic/ibeis | ibeis/templates/notebook_cells.py | 1 | 33630 | # -*- coding: utf-8 -*-
"""
ComamndLine:
python -m ibeis --tf autogen_ipynb --ipynb --db PZ_MTEST --ipynb
"""
from __future__ import absolute_import, division, print_function, unicode_literals
import utool as ut
COMMENT_SPACE = ut.codeblock(
r'''
### Comment space below:
''')
IGNOREAFTER = (ut.codebl... | apache-2.0 |
erramuzpe/NeuroVault | neurovault/apps/statmaps/views.py | 2 | 56878 | import csv
import functools
import gzip
import json
import nibabel as nib
import nidmresults
import numpy as np
import os
import re
import shutil
import tarfile
import tempfile
import traceback
import urllib
import zipfile
import zipstream
from collections import OrderedDict
from django.contrib import messages
from dja... | mit |
sylvchev/mdla | mdla/mdla.py | 1 | 53375 | """ Multivariate dictionary learning"""
# Author: Sylvain Chevallier
# License: GPL v3
import itertools
import sys
from time import time
import numpy as np
# Pour array3d
import scipy.sparse as sp
from joblib import Parallel, cpu_count, delayed
from numpy import floor
from sklearn.base import BaseEstimator, Transfor... | gpl-3.0 |
huzq/scikit-learn | sklearn/ensemble/_hist_gradient_boosting/gradient_boosting.py | 1 | 58621 | """Fast Gradient Boosting decision trees for classification and regression."""
# Author: Nicolas Hug
from abc import ABC, abstractmethod
from functools import partial
import numpy as np
from timeit import default_timer as time
from ...base import (BaseEstimator, RegressorMixin, ClassifierMixin,
i... | bsd-3-clause |
basnijholt/holoviews | holoviews/plotting/bokeh/element.py | 1 | 93489 | from __future__ import absolute_import, division, unicode_literals
import warnings
from types import FunctionType
import param
import numpy as np
import bokeh
import bokeh.plotting
from bokeh.core.properties import value
from bokeh.document.events import ModelChangedEvent
from bokeh.models import Renderer, Title, Le... | bsd-3-clause |
brianlorenz/COSMOS_IMACS_Redshifts | Redshift_Measurement/CrossCor.py | 1 | 65757 | import numpy as np
import glob
import sys
import getopt
import os
from astropy.io import fits
from scipy.interpolate import interp1d, splrep, splev, sproot
from scipy.optimize import fsolve
import matplotlib.pyplot as plt
from matplotlib.widgets import Button, SpanSelector, CheckButtons
from matplotlib import... | mit |
renatolm/endometriose | vassilis_meet.py | 1 | 46302 | from __future__ import division
import numpy as np
import skfuzzy as fuzz
import matplotlib.pyplot as plt
import scipy.integrate as integrate
def vassilis_defuzz(dism,disp,dor,cans):
dismenorreia = dism
dispareunia = disp
dorNasCostasPernas = dor
cansaco = cans
def nivel_leve_decresc(h):
return 5-(5*h)
def n... | gpl-3.0 |
marrabld/planarradpy | gui/gui_mainLayout.py | 1 | 42270 | #!/usr/bin/env python
import PyQt4
from PyQt4 import QtGui
import subprocess
from time import sleep
from timeit import Timer
from gui_About import *
import PyQt4.QtCore
import sys
import os
import multiprocessing
import re
import webbrowser
from PyQt4.QtGui import QContextMenuEvent, QMessageBox, QApplication, QWidget,... | gpl-2.0 |
kevin-coder/tensorflow-fork | tensorflow/tools/compatibility/renames_v2.py | 1 | 57016 | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
cython-testbed/pandas | pandas/core/sparse/array.py | 1 | 49305 | """
SparseArray data structure
"""
from __future__ import division
# pylint: disable=E1101,E1103,W0231
import operator
import numbers
import numpy as np
import warnings
import pandas as pd
from pandas.core.base import PandasObject
from pandas import compat
from pandas.errors import PerformanceWarning
from pandas.com... | bsd-3-clause |
quantopian/alphalens | alphalens/utils.py | 1 | 42081 | #
# Copyright 2018 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
OmnesRes/prepub | mysite/views.py | 1 | 120335 | from django.http import Http404, HttpResponse
from django.template.loader import get_template
from django.template import Context
from django.shortcuts import render
from django.shortcuts import redirect
from django.shortcuts import render_to_response
from django.template import RequestContext
from django.contrib.synd... | mit |
pratapvardhan/pandas | pandas/io/pytables.py | 1 | 165758 | """
High level interface to PyTables for reading and writing pandas data structures
to disk
"""
# pylint: disable-msg=E1101,W0613,W0603
from datetime import datetime, date
import time
import re
import copy
import itertools
import warnings
import os
from pandas.core.dtypes.common import (
is_list_like,
is_cate... | bsd-3-clause |
lukaselmer/ethz-data-mining | 2-svm/code/mapper.py | 1 | 31068 | #!/usr/bin/env python2.7
import sys
import math
import numpy as np
import scipy
from sklearn import linear_model
from sklearn.svm import LinearSVC
from sklearn.kernel_approximation import SkewedChi2Sampler, RBFSampler, AdditiveChi2Sampler, Nystroem
#from sklearn.multiclass import OneVsRestClassifier
#from sklearn.svm... | mit |
TAMU-CLASS/barnfire | src/indicators.py | 1 | 63477 | #! /usr/bin/env python
'''
Andrew Till
Fall 2014
PhD Research
Driver for creating the generalized energy mesh using clustering of observations based on similarity indicators. The indicators should be correlated with the flux: particles with energies that have similar indicators should have similar fluxes for all (r,O... | mit |
AutonomyLab/deep_intent | code/autoencoder_model/scripts/thesis_scripts/classifier_allsports.py | 1 | 49347 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import hickle as hkl
import numpy as np
np.random.seed(2 ** 10)
from keras import backend as K
K.set_image_dim_ordering('tf')
import tensorflow as tf
import time
from keras import regularizers
from keras.laye... | bsd-3-clause |
cjayb/mne-python | mne/label.py | 2 | 95345 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from collections import defaultdict
from colorsys import hsv_to_rgb, rgb_to_hsv
import os
import os.path as op
import copy ... | bsd-3-clause |
jor-/scipy | scipy/stats/_continuous_distns.py | 1 | 221290 | # -*- coding: utf-8 -*-
#
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from __future__ import division, print_function, absolute_import
import warnings
import numpy as np
from scipy._lib.doccer import (extend_notes_in_docstring,
... | bsd-3-clause |
laurentperrinet/Khoei_2017_PLoSCB | scripts/MotionParticlesFLE.py | 1 | 96890 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
from __future__ import division, print_function, absolute_import
__author__ = "Laurent Perrinet INT - CNRS"
__licence__ = 'BSD licence'
DEBUG = True
DEBUG = False
"""
MotionParticlesFLE.py
Script file for MotionParticles
See http://invibe.net/LaurentPerrinet/Publications... | mit |
amolkahat/pandas | pandas/core/reshape/merge.py | 1 | 61419 | """
SQL-style merge routines
"""
import copy
import warnings
import string
import numpy as np
from pandas.compat import range, lzip, zip, map, filter
import pandas.compat as compat
from pandas import (Categorical, DataFrame,
Index, MultiIndex, Timedelta, Series)
from pandas.core.arrays.categorica... | bsd-3-clause |
pinellolab/haystack_bio | haystack/find_motifs.py | 1 | 38942 | # python modules
import multiprocessing as mp
from functools import partial
import uuid
import subprocess as sb
import os
import sys
import random
import argparse
import ntpath
import shutil
from collections import defaultdict
import codecs
try:
import cPickle as cp
except:
import pickle as cp
# commmon funct... | agpl-3.0 |
BryanCutler/spark | python/pyspark/pandas/frame.py | 1 | 428289 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
dannyjacobs/PRISim | main/MWA_interferometer_array_delay_spectrum_simulations_vs_data_diagnostics.py | 1 | 73858 | import numpy as NP
from astropy.io import fits
from astropy.io import ascii
import scipy.constants as FCNST
from scipy import interpolate
import matplotlib.pyplot as PLT
import matplotlib.colors as PLTC
import matplotlib.cm as CMAP
import matplotlib.animation as MOV
from matplotlib import ticker
from scipy.interpolate... | mit |
popgengui/negui | agestrucne/asnviz/LineRegress.py | 1 | 35999 | from __future__ import division
from __future__ import print_function
#created by Brian Trethewey
#
#neGrapher is primary interface for graphing data
#neStats is primary interface for creating statistics output file for a dataset
from future import standard_library
standard_library.install_aliases()
from builtins imp... | agpl-3.0 |
Haunter17/MIR_SU17 | exp3/exp3b/exp3b.py | 1 | 57208 | import numpy as np
import tensorflow as tf
import h5py
import time
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import sys
# Functions for initializing neural nets parameters
def init_weight_variable(shape, nameIn):
initial = tf.truncated_normal(shape, stddev=0.1, dtype=tf.float32)
retu... | mit |
kjordahl/xray | xray/conventions.py | 1 | 35346 | from datetime import datetime
import re
import traceback
import warnings
import numpy as np
import pandas as pd
from collections import defaultdict
from pandas.tslib import OutOfBoundsDatetime
from .core import indexing, ops, utils
from .core.formatting import format_timestamp, first_n_items
from .core.variable impor... | apache-2.0 |
jiajunshen/partsNet | pnet/oriented_gaussian_parts_layer.py | 1 | 30760 | from __future__ import division, print_function, absolute_import
import numpy as np
import itertools as itr
import amitgroup as ag
from pnet.layer import Layer
import pnet
import pnet.matrix
from scipy import linalg
from sklearn.utils.extmath import logsumexp, pinvh
def _log_multivariate_normal_density_diag(X, means... | bsd-3-clause |
pmacosta/putil | putil/plot/panel.py | 1 | 46972 | # panel.py
# Copyright (c) 2013-2016 Pablo Acosta-Serafini
# See LICENSE for details
# pylint: disable=C0111,C0302,R0912,R0913,R0914,R0915,W0105,W0212
# PyPI imports
import numpy
import matplotlib.pyplot as plt
# Putil imports
import putil.exh
import putil.pcontracts
from .series import Series
from .functions import _... | mit |
MotokiShiga/stem-nmf | old/python_ver0.1/libnmf_jit.py | 1 | 39210 | """ NMF (Nonnegative Matrix Factorization) for Spectrum Imaging Data Analysis
"""
# Author: Motoki Shiga <shiga_m@gifu-u.ac.jp>
# License: MIT
#
# Reference
# [1] Motoki Shiga, Kazuyoshi Tatsumi, Shunsuke Muto, Koji Tsuda,
# Yuta Yamamoto, Toshiyuki Mori, Takayoshi Tanji,
# "Sparse Modeling of EELS and EDX ... | mit |
louispotok/pandas | pandas/core/reshape/reshape.py | 1 | 35421 | # pylint: disable=E1101,E1103
# pylint: disable=W0703,W0622,W0613,W0201
from pandas.compat import range, text_type, zip
from pandas import compat
from functools import partial
import itertools
import numpy as np
from pandas.core.dtypes.common import (
_ensure_platform_int,
is_list_like, is_bool_dtype,
nee... | bsd-3-clause |
gfyoung/pandas | pandas/core/indexes/datetimes.py | 1 | 40667 | from __future__ import annotations
from datetime import date, datetime, time, timedelta, tzinfo
import operator
from typing import TYPE_CHECKING, Optional, Tuple
import warnings
import numpy as np
from pandas._libs import NaT, Period, Timestamp, index as libindex, lib
from pandas._libs.tslibs import (
Resolution... | bsd-3-clause |
MTgeophysics/mtpy | legacy/modeling/modem_model.py | 1 | 86611 | #!/usr/bin/env python
"""
Description:
Define the Model class.
This module is refactored from modem.py which had over 5000 lines too big to manage and edit
Author: fei.zhang@ga.gov.au
Date: 2017-06-05
"""
from __future__ import print_function
import os
import matplotlib.pyplot as plt
import numpy as np
... | gpl-3.0 |
GoogleCloudPlatform/training-data-analyst | courses/machine_learning/deepdive2/production_ml/labs/samples/contrib/e2e-outlier-drift-explainer/seldon/seldon_e2e_adult.kale.nfs.py | 2 | 49695 | import kfp.dsl as dsl
import json
import kfp.components as comp
from collections import OrderedDict
from kubernetes import client as k8s_client
def setup(MINIO_ACCESS_KEY: str, MINIO_HOST: str, MINIO_MODEL_BUCKET: str, MINIO_SECRET_KEY: str):
pipeline_parameters_block = '''
MINIO_ACCESS_KEY = "{}"
MINIO_H... | apache-2.0 |
Hiteshsaai/BikeShare_DataAnalysis | Bike_Share_Analysis.py | 1 | 39685 |
# coding: utf-8
# # 2016 US Bike Share Activity Snapshot
#
# ## Table of Contents
# - [Introduction](#intro)
# - [Posing Questions](#pose_questions)
# - [Data Collection and Wrangling](#wrangling)
# - [Condensing the Trip Data](#condensing)
# - [Exploratory Data Analysis](#eda)
# - [Statistics](#statistics)
# ... | mit |
alanmcruickshank/superset-dev | superset/models/core.py | 1 | 33495 | """A collection of ORM sqlalchemy models for Superset"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from copy import copy, deepcopy
from datetime import date, datetime
import functools
import json
import logging
i... | apache-2.0 |
xguse/scikit-bio | skbio/sequence/tests/test_sequence.py | 2 | 106092 | # ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | bsd-3-clause |
demisto/content | Packs/Base/Scripts/DBotTrainClustering/DBotTrainClustering.py | 1 | 43461 | import demistomock as demisto
from CommonServerPython import *
from CommonServerUserPython import *
import pandas as pd
import numpy as np
import collections
import dill as pickle
import builtins
from sklearn.pipeline import Pipeline
from sklearn.compose import ColumnTransformer
from sklearn import cluster
from sklear... | mit |
pratapvardhan/pandas | pandas/core/groupby/groupby.py | 1 | 173320 | import types
from functools import wraps, partial
import numpy as np
import datetime
import collections
import warnings
import copy
from textwrap import dedent
from contextlib import contextmanager
from pandas.compat import (
zip, range, lzip,
callable, map
)
from pandas import compat
from pandas.compat.numpy... | bsd-3-clause |
StuntsPT/Structure_threader | structure_threader/plotter/structplot.py | 1 | 38720 | #!/usr/bin/python3
# Copyright 2015-2020 Francisco Pina Martins <f.pinamartins@gmail.com>
# and Diogo N. Silva <o.diogo.silva@gmail.com>
# This file is part of structure_threader.
# structure_threader is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as publ... | gpl-3.0 |
FrederichCheng/incubator-superset | superset/connectors/druid/models.py | 1 | 42178 | # pylint: disable=invalid-unary-operand-type
from collections import OrderedDict
import json
import logging
from copy import deepcopy
from datetime import datetime, timedelta
from six import string_types
import requests
import sqlalchemy as sa
from sqlalchemy import (
Column, Integer, String, ForeignKey, Text, Bo... | apache-2.0 |
rsepassi/tensor2tensor | tensor2tensor/data_generators/text_encoder.py | 1 | 31307 | # coding=utf-8
# Copyright 2018 The Tensor2Tensor Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable... | apache-2.0 |
hawkrobe/couzin_replication | analysis/experiment3/helpers/process_utils.py | 1 | 42269 |
import pandas as pd
import numpy as np
import sys
sys.path.append("../")
sys.path.append("./helpers/")
import stats
import environment as env
import smart_particle as inference
slow_dist = 17/8.0
fast_dist = 57/8.0
lookback = 4
stay_lookback = 8*3
spin_lookback = 8
copy_threshold = lookback
move_threshold = lookb... | mit |
KaliLab/optimizer | optimizer/fitnessFunctions.py | 1 | 52265 | from math import fsum, sqrt
from copy import copy
from pyelectro import analysis
from traceHandler import sizeError
import efel
import numpy as np
import scipy
import inspyred
from inspyred import ec
from inspyred.ec import emo
from inspyred.ec import variators
from inspyred.ec import observers
import modelHandler
impo... | lgpl-2.1 |
firelab/rxcadre | rxcadre/rxcadre.py | 1 | 60581 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
###############################################################################
#
# $Id$
# Project: RX Cadre Data Visualization
# Purpose: RX Cadre Data Visualization interface.
# Author: Kyle Shannon <kyle at pobox dot com>
# Kegan Rabil <krabil@yourdata... | unlicense |
Eric89GXL/numpy | numpy/lib/polynomial.py | 4 | 38469 | """
Functions to operate on polynomials.
"""
from __future__ import division, absolute_import, print_function
__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
'polyfit', 'RankWarning']
import re
import warnings
import numpy.core.... | bsd-3-clause |
dspelaez/tools | tools/vmpy.py | 1 | 52858 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
# vim:fenc=utf-8
# vim:fdm=marker
#
# =============================================================
# Copyright © 2017 Daniel Santiago <dpelaez@cicese.edu.mx>
# Distributed under terms of the GNU/GPL license.
# ============================================================... | gpl-3.0 |
johny-c/pylmnn | pylmnn/lmnn.py | 1 | 50724 | # coding: utf-8
"""
Large Margin Nearest Neighbor Classification
"""
# Author: John Chiotellis <johnyc.code@gmail.com>
# License: BSD 3 clause
from __future__ import print_function
from warnings import warn
import sys
import time
import numpy as np
from scipy.optimize import minimize
from scipy.sparse import csr_mat... | bsd-3-clause |
rdemolgen/snippets | PM1_plots/PM1_plotter.py | 1 | 33836 | from api import *
import re, sys, subprocess, json, os, getpass
import numpy as np
import pandas as pd
from collections import defaultdict
#the purpose of this class is to model and collect the data required of a plot and then write to a file for retention and subsequent plotting
hgmd_username = input("\nEnter HGMD P... | gpl-3.0 |
KayneWest/DeepSpeech | DeepSpeech.py | 1 | 39848 | import numpy
import theano
import sys
import math
from theano import tensor as T
from theano import shared
from theano.tensor.shared_randomstreams import RandomStreams
from collections import OrderedDict
def build_shared_zeros(shape, name):
""" Builds a theano shared variable filled with a zeros numpy array """
... | mit |
IntelLabs/hpat | sdc/datatypes/hpat_pandas_dataframe_pass.py | 1 | 64652 | # *****************************************************************************
# Copyright (c) 2020, Intel Corporation All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# Redistributions of sou... | bsd-2-clause |
phoebe-project/phoebe2 | phoebe/atmospheres/passbands.py | 1 | 187222 | #from phoebe.c import h, c, k_B
#from phoebe import u
from phoebe import __version__ as phoebe_version
from phoebe import conf, mpi
from phoebe.utils import _bytes
# NOTE: we'll import directly from astropy here to avoid
# circular imports BUT any changes to these units/constants
# inside phoebe will be ignored within... | gpl-3.0 |
tudarmstadt-lt/taxi | jnt/isas/taxo.py | 1 | 34858 | from re import split
from collections import defaultdict
import codecs
from time import time
import numpy as np
from pandas import read_csv, Series, merge, concat
from traceback import format_exc
from numpy import mean
import operator
import re
from traceback import format_exc
from .isas import ISAs
from .predictors i... | apache-2.0 |
jeremiedecock/pyai | ailib/optimize/minimizers/cutting_plane.py | 1 | 40577 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Copyright (c) 2014,2015,2016,2017 Jeremie DECOCK (http://www.jdhp.org)
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, ... | mit |
shoyer/xray | xarray/coding/cftime_offsets.py | 1 | 36161 | """Time offset classes for use with cftime.datetime objects"""
# The offset classes and mechanisms for generating time ranges defined in
# this module were copied/adapted from those defined in pandas. See in
# particular the objects and methods defined in pandas.tseries.offsets
# and pandas.core.indexes.datetimes.
# ... | apache-2.0 |
cycleuser/GeoPython | geopytool/CustomClass.py | 1 | 60227 | version = '0.8.19.2.1'
date = '2019-2-1'
dpi = 128
#coding:utf-8
from geopytool.ImportDependence import *
#from geopytool.TableViewer import TableViewer
class GrowingTextEdit(QtWidgets.QTextEdit):
def __init__(self, *args, **kwargs):
super(GrowingTextEdit, self).__init__(*args, **kwargs)
sel... | gpl-3.0 |
ptitjano/bokeh | bokeh/charts/data_source.py | 1 | 34236 | """The classes and functionality used to transform data inputs to consistent types."""
# -----------------------------------------------------------------------------
# Copyright (c) 2012 - 2014, Continuum Analytics, Inc. All rights reserved.
#
# Powered by the Bokeh Development Team.
#
# The full license is in the fil... | bsd-3-clause |
snfactory/extract-star | extract_star/main.py | 1 | 86928 | # -*- coding: utf-8 -*-
"""
3D PSF-based point-source extractor. The PSF is a constrained
Gaussian+Moffat with elliptical distortion.
Todo:
* one could use Aitchison (or 'additive log-ratio') transform to
enforce the normalization constraint on alphas (see
http://thread.gmane.org/gmane.comp.python.scientific.use... | mit |
hstau/covar-cryo | covariance/ManifoldEM_GUI.py | 1 | 452414 | from __future__ import print_function
import sys, os, os.path, time, errno, psutil
import csv
from subprocess import call
import multiprocessing
import optparse
time_init = time.strftime("%Y%m%d_%H%M%S")
pyDir = os.path.dirname(os.path.abspath(__file__)) #python file location
inputDir = os.path.join(pyDir, 'data_inpu... | gpl-2.0 |
parklab/NGSCheckMate | ncm_fastq.py | 1 | 36530 | import os
import sys
import math
import subprocess, time
import argparse
from argparse import RawTextHelpFormatter
global fastq1
global fastq2
global sub_rate
global desire_depth
global reference_length
global pattern_length
global maxthread
global nodeptherror
global PE
global bed_file
global outdir
global outfilenam... | mit |
renesugar/arrow | python/pyarrow/parquet.py | 1 | 55252 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
cjayb/mne-python | mne/tests/test_evoked.py | 1 | 30113 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
import os.path as op
import pickle
import numpy as np
fr... | bsd-3-clause |
freerangehen/LSTMmusic | LSTMmusicMB.py | 1 | 114261 | ############## music generation with 3 layer LSTM ######################
#
# Distributed under the MIT license by Henry Ip
########################################################################
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
import matplotlib.cm as cm
import math
imp... | mit |
winklerand/pandas | pandas/core/indexes/base.py | 1 | 147570 | import datetime
import warnings
import operator
import numpy as np
from pandas._libs import (lib, index as libindex, tslib as libts,
algos as libalgos, join as libjoin,
Timestamp, Timedelta, )
from pandas._libs.lib import is_datetime_array
from pandas._libs.tslibs im... | bsd-3-clause |
ioam/holoviews | holoviews/core/data/__init__.py | 1 | 36064 | from __future__ import absolute_import
try:
import itertools.izip as zip
except ImportError:
pass
import numpy as np
import param
from .. import util
from ..dimension import redim, Dimension, process_dimensions
from ..element import Element
from ..ndmapping import OrderedDict
from ..spaces import HoloMap, Dy... | bsd-3-clause |
OSSHealth/ghdata | workers/insight_worker/insight_worker.py | 1 | 35224 | #SPDX-License-Identifier: MIT
from multiprocessing import Process, Queue
from urllib.parse import urlparse
import requests, sys
import pandas as pd
import sqlalchemy as s
from sqlalchemy.ext.automap import automap_base
from sqlalchemy import MetaData, and_
import statistics, logging, os, json, time
import numpy as np
i... | mit |
LinkItONEDevGroup/LASS | LASS-Simulator/test/test_pygrib.py | 1 | 58613 | from mpl_toolkits.basemap import Basemap # import Basemap matplotlib toolkit
import numpy as np
import matplotlib.pyplot as plt
import pygrib # import pygrib interface to grib_api
def grb_to_grid(grb_obj):
"""Takes a single grb object containing multiple
levels. Assumes same time, pressure levels. Compiles to... | mit |
jshoyer/plantcv | tests/tests.py | 1 | 83038 | #!/usr/bin/env python
import pytest
import os
import shutil
import numpy as np
import cv2
import plantcv as pcv
import plantcv.learn
# Import matplotlib and use a null Template to block plotting to screen
# This will let us test debug = "plot"
import matplotlib
matplotlib.use('Template')
TEST_DATA = os.path.join(os.p... | mit |
miguel1velazquez/FJbackSPIN | PluginBackSPIN/src/bsScripts/backSPIN.py | 1 | 37329 | #!/usr/bin/pythonw
# Copyright (c) 2015, Amit Zeisel, Gioele La Manno and Sten Linnarsson
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# * Redistributions of source code must retain the abov... | apache-2.0 |
WillieMaddox/scipy | scipy/stats/morestats.py | 1 | 92739 | # Author: Travis Oliphant, 2002
#
# Further updates and enhancements by many SciPy developers.
#
from __future__ import division, print_function, absolute_import
import math
import warnings
from collections import namedtuple
import numpy as np
from numpy import (isscalar, r_, log, around, unique, asarray,
... | bsd-3-clause |
SpaceKatt/CSPLN | apps/scaffolding/mac/web2py/web2py.app/Contents/Resources/lib/python2.7/matplotlib/transforms.py | 2 | 77154 | """
matplotlib includes a framework for arbitrary geometric
transformations that is used determine the final position of all
elements drawn on the canvas.
Transforms are composed into trees of :class:`TransformNode` objects
whose actual value depends on their children. When the contents of
children change, their pare... | gpl-3.0 |
mikofski/pvlib-python | pvlib/spa.py | 3 | 48591 | """
Calculate the solar position using the NREL SPA algorithm either using
numpy arrays or compiling the code to machine language with numba.
"""
# Contributors:
# Created by Tony Lorenzo (@alorenzo175), Univ. of Arizona, 2015
import os
import threading
import warnings
import numpy as np
# this block is a way to u... | bsd-3-clause |
gameduell/dask | dask/dataframe/core.py | 1 | 137543 | from __future__ import absolute_import, division, print_function
from collections import Iterator
from distutils.version import LooseVersion
import operator
from operator import getitem, setitem
from pprint import pformat
import uuid
import warnings
from toolz import merge, partial, first, unique, partition_all
impor... | bsd-3-clause |
themiurgo/folium | folium/folium.py | 1 | 31048 | # -*- coding: utf-8 -*-
"""
Folium
-------
Make beautiful, interactive maps with Python and Leaflet.js
"""
from __future__ import absolute_import
import warnings
import json
from folium.six import text_type, binary_type
from .map import Map as _Map
from .map import Icon, Marker, Popup, FitBounds
from .features imp... | mit |
shoyer/numpy | numpy/lib/npyio.py | 1 | 86348 | from __future__ import division, absolute_import, print_function
import sys
import os
import re
import functools
import itertools
import warnings
import weakref
import contextlib
from operator import itemgetter, index as opindex
import numpy as np
from . import format
from ._datasource import DataSource
from numpy.co... | bsd-3-clause |
ajdawson/numpy | numpy/core/tests/test_multiarray.py | 1 | 189171 | from __future__ import division, absolute_import, print_function
import collections
import tempfile
import sys
import os
import shutil
import warnings
import operator
import io
if sys.version_info[0] >= 3:
import builtins
else:
import __builtin__ as builtins
from decimal import Decimal
import numpy as np
fro... | bsd-3-clause |
tynn/numpy | numpy/lib/polynomial.py | 5 | 38581 | """
Functions to operate on polynomials.
"""
from __future__ import division, absolute_import, print_function
__all__ = ['poly', 'roots', 'polyint', 'polyder', 'polyadd',
'polysub', 'polymul', 'polydiv', 'polyval', 'poly1d',
'polyfit', 'RankWarning']
import re
import warnings
import numpy.core.... | bsd-3-clause |
aw3s/PT3S | Xm.py | 1 | 654881 | """
>>> # ---
>>> # Imports
>>> # ---
>>> import os
>>> import logging
>>> logger = logging.getLogger('PT3S.Xm')
>>> # ---
>>> # path
>>> # ---
>>> if __name__ == "__main__":
... try:
... dummy=__file__
... logger.debug("{0:s}{1:s}{2:s}".format('DOCTEST: __main__ Context: ','path = os.path.di... | mit |
dsm054/pandas | pandas/tests/dtypes/test_dtypes.py | 1 | 30622 | # -*- coding: utf-8 -*-
import re
import pytest
import numpy as np
import pandas as pd
from pandas import (
Series, Categorical, CategoricalIndex, IntervalIndex, date_range)
from pandas.core.dtypes.dtypes import (
DatetimeTZDtype, PeriodDtype,
IntervalDtype, CategoricalDtype, registry, _pandas_registry)
f... | bsd-3-clause |
shoyer/xray | xarray/core/accessor_str.py | 1 | 30275 | # The StringAccessor class defined below is an adaptation of the
# pandas string methods source code (see pd.core.strings)
# For reference, here is a copy of the pandas copyright notice:
# (c) 2011-2012, Lambda Foundry, Inc. and PyData Development Team
# All rights reserved.
# Copyright (c) 2008-2011 AQR Capital Man... | apache-2.0 |
e-koch/pyspeckit | pyspeckit/spectrum/plotters.py | 1 | 35855 | """
=======
Plotter
=======
.. moduleauthor:: Adam Ginsburg <adam.g.ginsburg@gmail.com>
"""
from __future__ import print_function
import matplotlib
import matplotlib.figure
import numpy as np
import astropy.units as u
import copy
import inspect
from astropy import log
# this mess is to handle a nested hell of differe... | mit |
gkunter/coquery | coquery/gui/visualizationdesigner.py | 1 | 47579 | # -*- coding: utf-8 -*-
"""
visualizationDesigner.py is part of Coquery.
Copyright (c) 2017-2019 Gero Kunter (gero.kunter@coquery.org)
Coquery is released under the terms of the GNU General Public License (v3).
For details, see the file LICENSE that you should have received along
with Coquery. If not, see <http://www... | gpl-3.0 |
biosustain/marsi | marsi/cobra/strain_design/post_processing.py | 1 | 31850 | # Copyright 2016 The Novo Nordisk Foundation Center for Biosustainability, DTU.
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
# Unless required... | apache-2.0 |
mwengren/sensorml2iso | sensorml2iso/sensorml2iso.py | 1 | 35374 | import os
import errno
import io
import sys
from datetime import datetime, timedelta
from dateutil import parser
import pytz
from six import iteritems
try:
from urllib.parse import unquote, unquote_plus, urlencode, urlparse # Python 3
except ImportError:
from urllib import unquote, unquote_plus, urlencode #... | mit |
jmontoyam/mne-python | mne/evoked.py | 2 | 52037 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (... | bsd-3-clause |
deepfield/ibis | ibis/sql/postgres/tests/test_functions.py | 1 | 42647 | import os
import sys
import operator
import string
import warnings
from operator import methodcaller
from datetime import date, datetime
import pytest
import numpy as np
import ibis
import ibis.expr.types as ir
import ibis.expr.datatypes as dt
import ibis.config as config
from ibis import literal as L
import pand... | apache-2.0 |
zorroblue/scikit-learn | sklearn/decomposition/pca.py | 2 | 30157 | """ Principal Component Analysis
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Mathieu Blondel <mathieu@mblondel.org>
# Denis A. Engemann <denis-alexander.engemann@inria.fr>
# Michael Eickenberg <michael.eickenberg@inria.fr>... | bsd-3-clause |
jreback/pandas | pandas/io/parsers.py | 1 | 139632 | """
Module contains tools for processing files into DataFrames or other objects
"""
from collections import abc, defaultdict
import csv
import datetime
from io import StringIO
import itertools
import re
import sys
from textwrap import fill
from typing import (
Any,
Dict,
Iterable,
Iterator,
List,
... | bsd-3-clause |
brockk/clintrials | clintrials/dosefinding/efftox.py | 1 | 45709 | __author__ = 'Kristian Brock'
__contact__ = 'kristian.brock@gmail.com'
""" An implementation of Thall & Cook's EffTox design for dose-finding in clinical trials.
See:
Thall, P.F. and Cook, J.D. (2004). Dose-Finding Based on Efficacy-Toxicity Trade-Offs, Biometrics, 60: 684-693.
Cook, J.D. Efficacy-Toxicity trade-offs... | gpl-3.0 |
jesserobertson/pynoddy | pynoddy/experiment/TopologyAnalysis.py | 1 | 84153 | # -*- coding: utf-8 -*-
"""
Created on Wed Jul 15 12:14:08 2015
@author: Sam Thiele
"""
import os
import numpy as np
import scipy as sp
import math
from pynoddy.experiment.MonteCarlo import MonteCarlo
from pynoddy.output import NoddyTopology
from pynoddy.output import NoddyOutput
from pynoddy.history import NoddyHist... | gpl-2.0 |
ncsu-osgeorel/grass-tangible-landscape | activities.py | 1 | 33748 | # -*- coding: utf-8 -*-
"""
@brief activities
This program is free software under the GNU General Public License
(>=v2). Read the file COPYING that comes with GRASS for details.
@author: Anna Petrasova (akratoc@ncsu.edu)
"""
import os
import imp
import datetime
import json
import time
import traceback
import wx
impor... | gpl-2.0 |
josenavas/QiiTa | qiita_db/test/test_processing_job.py | 1 | 45880 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
ibis-project/ibis | ibis/backends/impala/client.py | 1 | 59582 | import io
import operator
import re
import threading
import time
import traceback
import weakref
from collections import deque
from posixpath import join as pjoin
import numpy as np
import pandas as pd
from pkg_resources import parse_version
import ibis.common.exceptions as com
import ibis.expr.datatypes as dt
import... | apache-2.0 |
SKIRT/PTS | core/basics/table.py | 1 | 108296 | #!/usr/bin/env python
# -*- coding: utf8 -*-
# *****************************************************************
# ** PTS -- Python Toolkit for working with SKIRT **
# ** © Astronomical Observatory, Ghent University **
# *****************************************************************
##... | agpl-3.0 |
badbytes/pymeg | gui/wx/megsubplot.py | 1 | 43374 | #!/usr/bin/env python
# -*- coding: ansi_x3.4-1968 -*-
# generated by wxGlade 0.6.3 on Tue Sep 29 14:21:08 2009
import wx
# begin wxGlade: extracode
# end wxGlade
import matplotlib
matplotlib.use('WXAgg')
from matplotlib.figure import Figure
from matplotlib.backends.backend_wxagg import \
FigureCanvasWxAgg as Fi... | gpl-3.0 |
mieand/kmos | kmos/run/__init__.py | 1 | 76904 | #!/usr/bin/env python
"""
A front-end module to run a compiled kMC model. The actual model is
imported in kmc_model.so and all parameters are stored in kmc_settings.py.
The model can be used directly like so::
from kmos.model import KMC_Model
model = KMC_Model()
model.parameters.T = 500
model.do_step... | gpl-3.0 |
MJuddBooth/pandas | pandas/tests/test_strings.py | 1 | 137417 | # -*- coding: utf-8 -*-
# pylint: disable-msg=E1101,W0612
from datetime import datetime, timedelta
import re
import numpy as np
from numpy import nan as NA
from numpy.random import randint
import pytest
import pandas.compat as compat
from pandas.compat import PY2, PY3, range, u
from pandas import DataFrame, Index, ... | bsd-3-clause |
teonlamont/mne-python | mne/io/proj.py | 2 | 33757 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
#
# License: BSD (3-clause)
from copy import deepcopy
from itertools import count
from math i... | bsd-3-clause |
plotly/python-api | packages/python/plotly/plotly/graph_objs/_scatter3d.py | 1 | 89439 | from plotly.basedatatypes import BaseTraceType as _BaseTraceType
import copy as _copy
class Scatter3d(_BaseTraceType):
# class properties
# --------------------
_parent_path_str = ""
_path_str = "scatter3d"
_valid_props = {
"connectgaps",
"customdata",
"customdatasrc",
... | mit |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/tests/test_triangulation.py | 2 | 37456 | import numpy as np
import matplotlib.pyplot as plt
import matplotlib.tri as mtri
import matplotlib.delaunay as mdel
from nose.tools import assert_equal
from numpy.testing import assert_array_equal, assert_array_almost_equal,\
assert_array_less
from matplotlib.testing.decorators import image_comparison
import matplo... | gpl-3.0 |
diegocavalca/Studies | phd-thesis/nilmtk/nilmtk/metergroup.py | 1 | 72609 | from __future__ import print_function, division
import warnings
import gc
from sys import stdout
from collections import Counter
from copy import copy, deepcopy
from collections import namedtuple
from datetime import timedelta
import networkx as nx
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt... | cc0-1.0 |
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