repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
jungmannlab/picasso | picasso/gui/nanotron.py | 1 | 49093 | """
gui/nanotron
~~~~~~~~~~~~~~~~~~~~
Graphical user interface for classification using deep learning
:author: Alexander Auer, Maximilian Strauss 2020
:copyright: Copyright (c) 2020 Jungmann Lab, MPI of Biochemistry
"""
import os.path as _ospath
import os
import sys
import traceback
from tqdm imp... | mit |
openego/eDisGo | edisgo/tools/pypsa_io_lopf.py | 1 | 38036 | """
This modules provides tools to convert graph based representation of the grid
topology to PyPSA data model. Call :func:`to_pypsa` to retrieve the PyPSA grid
container.
"""
from edisgo.grid.components import Transformer, Line, LVStation
import numpy as np
import pandas as pd
import itertools
from math import pi, s... | agpl-3.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/backends/backend_ps.py | 1 | 60941 | """
A PostScript backend, which can produce both PostScript .ps and .eps
"""
# PY3KTODO: Get rid of "print >>fh" syntax
import glob, math, os, shutil, sys, time
def _fn_name(): return sys._getframe(1).f_code.co_name
import io
if sys.version_info[0] < 3:
import io
try:
from hashlib import md5
except ImportEr... | gpl-3.0 |
cython-testbed/pandas | pandas/tests/indexes/test_base.py | 1 | 97648 | # -*- coding: utf-8 -*-
import pytest
from datetime import datetime, timedelta
from decimal import Decimal
from collections import defaultdict
import pandas.util.testing as tm
from pandas.core.dtypes.generic import ABCIndex
from pandas.core.dtypes.common import is_unsigned_integer_dtype
from pandas.core.indexes.api ... | bsd-3-clause |
Star2Billing/cdr-stats | cdr_stats/cdr/views.py | 1 | 37698 | #
# CDR-Stats License
# http://www.cdr-stats.org
#
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this file,
# You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Copyright (C) 2011-2015 Star2Billing S.L.
#
# The Initial Develope... | mpl-2.0 |
Ensembles/ert | python/python/ert/ecl/ecl_sum.py | 1 | 44919 | # Copyright (C) 2011 Statoil ASA, Norway.
#
# The file 'ecl_sum.py' is part of ERT - Ensemble based Reservoir Tool.
#
# ERT is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License... | gpl-3.0 |
stefangri/s_s_productions | PHY641/V70_Vakuumphysik/Messdaten/auswertung.py | 1 | 30625 | import numpy as np
import uncertainties.unumpy as unp
from uncertainties import ufloat
from uncertainties.unumpy import nominal_values as noms
from uncertainties.unumpy import std_devs as stds
from uncertainties import correlated_values
import math
from scipy.optimize import curve_fit
import matplotlib.pyplot as plt
fr... | mit |
PalNilsson/pilot2 | pilot/user/atlas/container.py | 1 | 41706 | #!/usr/bin/env python
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
# http://www.apache.org/licenses/LICENSE-2.0
#
# Authors:
# - Paul Nilsson, paul.nilsson@cern.ch, 2017-2020
# - Alexander B... | apache-2.0 |
losonczylab/sima | examples/ConnectToEC2.py | 3 | 41274 | #!/usr/bin/env python
"""
Written by Vijay MK Namboodiri and Randall L Ung of the Stuber lab at UNC-CH
Disclaimer: Some of the structure of this code is borrowed from a similar
script included in Thunder (http://thunder-project.org/) for the set up of
a cluster on AWS. There is no actual or implied warranty for the ... | gpl-2.0 |
par2/lamana | lamana/tests/test_utils.py | 1 | 42070 | #------------------------------------------------------------------------------
'''Test for consistency of utils.'''
# CAUTION: This module writes and removes temporary files in the "export" dir
import os
import sys
import abc
import logging
import tempfile
import difflib
##import collections as ct
import nose.tools... | bsd-3-clause |
zhouyao1994/incubator-superset | superset/db_engine_specs/base.py | 1 | 31673 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
RPGOne/Skynet | gen_rst.py | 2 | 40257 | """
Example generation for the scikit learn
Generate the rst files for the examples by iterating over the python
example files.
Files that generate images should start with 'plot'
"""
from __future__ import division, print_function
from time import time
import ast
import os
import re
import shutil
import traceback
i... | bsd-3-clause |
DGrady/pandas | pandas/io/formats/format.py | 2 | 86986 | # -*- coding: utf-8 -*-
"""
Internal module for formatting output data in csv, html,
and latex files. This module also applies to display formatting.
"""
from __future__ import print_function
from distutils.version import LooseVersion
# pylint: disable=W0141
from textwrap import dedent
from pandas.core.dtypes.missin... | bsd-3-clause |
biocore/qiime2 | qiime2/metadata/tests/test_metadata.py | 1 | 59565 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2019, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
SiccarPoint/numpy | numpy/lib/function_base.py | 1 | 154129 | from __future__ import division, absolute_import, print_function
import warnings
import sys
import collections
import operator
import numpy as np
import numpy.core.numeric as _nx
from numpy.core import linspace, atleast_1d, atleast_2d
from numpy.core.numeric import (
ones, zeros, arange, concatenate, array, asarr... | bsd-3-clause |
ArijanaBrlek/superset | superset/views/core.py | 1 | 82091 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from collections import defaultdict
from datetime import datetime, timedelta
import json
import logging
import pandas as pd
import pickle
import re
import time
import tra... | apache-2.0 |
perryjohnson/biplaneblade | biplane_blade_lib/prep_stn22_mesh.py | 1 | 31043 | """Write initial TrueGrid files for one biplane blade station.
Usage
-----
start an IPython (qt)console with the pylab flag:
$ ipython qtconsole --pylab
or
$ ipython --pylab
Then, from the prompt, run this script:
|> %run biplane_blade_lib/prep_stnXX_mesh.py
or
|> import biplane_blade_lib/prep_stnXX_mesh
... | gpl-3.0 |
arranger1044/iterated-pysoner-dilemma | pd.py | 1 | 32742 | import numpy
import pandas
from matplotlib import pyplot as plt
import seaborn as sns
class IPDGame(object):
"""
Representing a two players Iterated Prisoner's Dilemma game (IPD)
"""
def __init__(self,
players,
payoffs,
obs_noise=0.0):
"""
... | gpl-3.0 |
peraktong/Cannon-Experiment | 0228_plot_simultaneously_labels.py | 1 | 52106 |
import numpy as np
from astropy.table import Table
from astropy.io import fits
import matplotlib.pyplot as plt
import matplotlib
import pickle
from TheCannon_2 import dataset,apogee
from TheCannon_2 import model
pkl_file = open('wl.pkl', 'rb')
wl = pickle.load(pkl_file)
pkl_file.close()
# load path
pkl_file = op... | mit |
jgliss/geonum | geonum/mapping.py | 1 | 37381 | # -*- coding: utf-8 -*-
#
# Geonum is a Python library for geographical calculations in 3D
# Copyright (C) 2017 Jonas Gliss (jonasgliss@gmail.com)
#
# This program is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License a
# published by the Free Software Foundation... | gpl-3.0 |
detrout/debian-statsmodels | statsmodels/base/model.py | 1 | 70648 | from __future__ import print_function
from statsmodels.compat.python import iterkeys, lzip, range, reduce
import numpy as np
from scipy import stats
from statsmodels.base.data import handle_data
from statsmodels.tools.tools import recipr, nan_dot
from statsmodels.stats.contrast import ContrastResults
from statsmodels.t... | bsd-3-clause |
jdanbrown/pydatalab | solutionbox/structured_data/mltoolbox/_structured_data/_package.py | 1 | 30290 | # Copyright 2017 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | apache-2.0 |
wbsljh/caravel | caravel/forms.py | 1 | 45943 | """Contains the logic to create cohesive forms on the explore view"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from collections import OrderedDict
from copy import copy
import json
import math
from flask_babel ... | apache-2.0 |
sjpet/epysteme | tests/test_sets_sql.py | 1 | 39312 | # -*- coding: utf-8 -*-
"""Unit tests for epysteme/sets/sql.py.
Author: Stefan Peterson
"""
import os
import pytest
import pandas as pd
from .context import epysteme as epy
data_path = os.path.join(os.path.dirname(os.path.abspath(__file__)), "data")
test_dates = ["2017-07-20",
"2017-07-21",
... | mit |
zohannn/motion_manager | scripts/old/task_3_picking/var_0/predicting_task_3_var_0_10k.py | 1 | 280113 | #!/usr/bin/env python3
import sys
import pandas as pd
from sklearn import decomposition
from sklearn import metrics
from sklearn.externals import joblib
import matplotlib.pyplot as plt
import tensorflow as tf
import numpy as np
import math
from random import randint
# HUPL
from HUPL.learner import preprocess_featur... | mit |
laijingtao/landlab | landlab/grid/hex.py | 1 | 42705 | #! /usr/env/python
"""
Python implementation of ModelGrid, a base class used to create and manage
grids for 2D numerical models.
Getting Information about a Grid
--------------------------------
The following attributes, properties, and methods provide data about the grid,
its geometry, and the connectivity among the ... | mit |
jbwhit/fine-structure-inference | finestructure/finestructure.py | 1 | 35752 | xlabel_wavelength = r"Wavelength $\left[\AA\right]$"
import warnings
warnings.filterwarnings('ignore')
import matplotlib as mpl
from matplotlib import pyplot as plt
from matplotlib.patches import Rectangle
from matplotlib.pyplot import GridSpec
from itertools import combinations, islice, takewhile
import seaborn as ... | mit |
abigailStev/stingray | stingray/crossspectrum.py | 1 | 34738 | from __future__ import division, absolute_import, print_function
import numpy as np
import scipy
import scipy.stats
import scipy.fftpack
import scipy.optimize
from stingray.lightcurve import Lightcurve
from stingray.utils import rebin_data, simon, rebin_data_log
from stingray.exceptions import StingrayError
from stin... | mit |
Erotemic/ibeis | ibeis/scripts/specialdraw.py | 1 | 73472 | from __future__ import absolute_import, division, print_function
import utool as ut
import numpy as np
(print, rrr, profile) = ut.inject2(__name__)
def nx_makenode(graph, name, **attrkw):
if 'size' in attrkw:
attrkw['width'], attrkw['height'] = attrkw.pop('size')
graph.add_node(name, **attrkw)
ret... | apache-2.0 |
pradyu1993/scikit-learn | sklearn/hmm.py | 1 | 44770 | # Hidden Markov Models
#
# Author: Ron Weiss <ronweiss@gmail.com>
# and Shiqiao Du <lucidfrontier.45@gmail.com>
# API changes: Jaques Grobler <jaquesgrobler@gmail.com>
"""
The :mod:`sklearn.hmm` module implements hidden Markov models.
**Warning:** :mod:`sklearn.hmm` is orphaned, undocumented and has known
numerical s... | bsd-3-clause |
dilawar/moose-core | python/rdesigneur/rdesigneur.py | 1 | 73863 | # -*- coding: utf-8 -*-
#########################################################################
## rdesigneur0_5.py ---
## This program is part of 'MOOSE', the
## Messaging Object Oriented Simulation Environment.
## Copyright (C) 2014 Upinder S. Bhalla. and NCBS
## It is made available under the terms of th... | gpl-3.0 |
cadowd/proppy | main.py | 1 | 57116 | # -*- coding: utf-8 -*-
"""
Interface for codes to calculate propeller and motor performance.
Copyright 2016 Cameron Dowd
This file is part of PropPy.
PropPy is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Founda... | gpl-3.0 |
nixingyang/Kaggle-Competitions | Bengali.AI Handwritten Grapheme Classification/solution.py | 1 | 36312 | import os
import pickle
import shutil
import sys
from collections import OrderedDict
from datetime import datetime
import cv2
import larq as lq
import matplotlib
import matplotlib.pyplot as plt
import numpy as np
import tensorflow as tf
from sklearn.model_selection import StratifiedKFold
from tensorflow.python.keras i... | mit |
datapythonista/pandas | pandas/core/groupby/groupby.py | 1 | 106961 | """
Provide the groupby split-apply-combine paradigm. Define the GroupBy
class providing the base-class of operations.
The SeriesGroupBy and DataFrameGroupBy sub-class
(defined in pandas.core.groupby.generic)
expose these user-facing objects to provide specific functionality.
"""
from __future__ import annotations
fr... | bsd-3-clause |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/dtypes/test_inference.py | 1 | 48795 | """
These the test the public routines exposed in types/common.py
related to inference and not otherwise tested in types/test_common.py
"""
import collections
from datetime import date, datetime, time, timedelta
from decimal import Decimal
from fractions import Fraction
from io import StringIO
from numbers import Numb... | apache-2.0 |
ranaroussi/ezibpy | ezibpy/ezibpy.py | 1 | 87918 | #!/usr/bin/env python
# -*- coding: UTF-8 -*-
#
# ezIBpy: a Pythonic Client for Interactive Brokers API
# https://github.com/ranaroussi/ezibpy
#
# Copyright 2015-2019 Ran Aroussi
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You ... | apache-2.0 |
neuropoly/spinalcordtoolbox | spinalcordtoolbox/straightening.py | 1 | 34333 | #!/usr/bin/env python
# -*- coding: utf-8
# Functions dealing with spinal cord straightening
# TODO: move _get_centerline inside Class
# TODO: only input Image instead of file names
import os
import time
import logging
import inspect
import bisect
import numpy as np
from nibabel import Nifti1Image, save
from spinal... | mit |
SGenheden/Scripts | Membrane/wham.py | 1 | 34313 | # Author: Samuel Genheden samuel.genheden@gmail.com
"""
Routines and classes to read in output files from umbrella sampling,
execute weighted histogram analysis method (WHAM) and calculate
the PMF along a 1D reaction coordinate
"""
import os
import tempfile
import shutil
import subprocess
import numpy as np
import n... | mit |
Autoplectic/dit | dit/algorithms/pid_broja.py | 1 | 36533 | # -*- coding: utf-8 -*-
"""
Partial information decompositions
and
Maxent decompositions of I[sources : target]
"""
from __future__ import division, print_function
from debtcollector import removals
import logging
from collections import defaultdict
import itertools
import numpy as np
import dit
from ..utils ... | bsd-3-clause |
cbertinato/pandas | pandas/tests/computation/test_eval.py | 1 | 70193 | from distutils.version import LooseVersion
from functools import reduce
from itertools import product
import operator
import warnings
import numpy as np
from numpy.random import rand, randint, randn
import pytest
from pandas.errors import PerformanceWarning
import pandas.util._test_decorators as td
from pandas.core.... | bsd-3-clause |
sileht/gnocchi | gnocchi/carbonara.py | 1 | 34814 | # -*- encoding: utf-8 -*-
#
# Copyright © 2016-2018 Red Hat, Inc.
# Copyright © 2014-2015 eNovance
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICE... | apache-2.0 |
dssg/wikienergy | disaggregator/build/pandas/pandas/io/parsers.py | 1 | 83207 | """
Module contains tools for processing files into DataFrames or other objects
"""
from __future__ import print_function
from pandas.compat import range, lrange, StringIO, lzip, zip, string_types, map
from pandas import compat
import re
import csv
import warnings
import numpy as np
from pandas.core.index import Inde... | mit |
whitead/plumed_grids | plumed_grids.py | 1 | 31073 | #
# plumed_grids.py
#
# Written by Andrew White
# See LICENSE and README file included in repo
#
from __future__ import absolute_import, division, print_function
from math import ceil, floor, log, exp, pi, copysign
import numpy as np
from scipy.integrate import simps
import copy
NDITER = True
try:
np.nditer
exce... | gpl-2.0 |
google/timesketch | api_client/python/timesketch_api_client/search.py | 1 | 35521 | # Copyright 2020 Google Inc. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | apache-2.0 |
puruckertom/ubertool | ubertool/beerex/beerex_exe.py | 1 | 37973 | from __future__ import division #brings in Python 3.0 mixed type calculations
import numpy as np
import os
import pandas as pd
import sys
#find parent directory and import model
parentddir = os.path.abspath(os.path.join(os.path.dirname(__file__), os.path.pardir))
sys.path.append(parentddir)
from base.uber_model impo... | unlicense |
gracecox/MagPySV | magpysv/gvo_tools.py | 1 | 50222 | # -*- coding: utf-8 -*-
# Copyright (C) 2020 Grace Cox and Will Brown (British Geological Survey)
#
# Released under the MIT license, a copy of which is located at the root of
# this project.
"""Module containing functions to apply the Principal Component Analysis (PCA)
denoising method to Geomagnetic Virtual... | mit |
sostenibilidad-unam/abm2 | empirical_py/model.py | 1 | 30005 | # coding: utf-8
from sqlalchemy import Column, Integer, ForeignKey, Float, Boolean, String
from sqlalchemy.orm import mapper, relationship
from sqlalchemy.ext.declarative import declarative_base
import random
import pandas as pd
Base = declarative_base()
wf = [0.0625, 0.125, 0.25, 0.5, 1]
wfi = [1, 0.5, 0.25, 0.125... | gpl-3.0 |
schwarty/nignore | openfmri.py | 1 | 32457 | import os
import re
import glob
import csv
import copy
import shutil
import warnings
import nibabel as nb
import numpy as np
from sklearn.pipeline import Pipeline
from nilearn.input_data import MultiNiftiMasker
from nilearn.input_data import NiftiMasker
from nilearn.image.resampling import resample_img
# from nignore... | bsd-3-clause |
kiliakis/BLonD | impedances/impedance.py | 1 | 38779 |
# Copyright 2015 CERN. This software is distributed under the
# terms of the GNU General Public Licence version 3 (GPL Version 3),
# copied verbatim in the file LICENCE.md.
# In applying this licence, CERN does not waive the privileges and immunities
# granted to it by virtue of its status as an Intergovernmental Or... | gpl-3.0 |
sniemi/SamPy | sandbox/src/COSFUVSensitivityAndSAAMapping.py | 1 | 34574 | '''
Adapted from Merle Reinhard's HST script.
http://stevendkay.wordpress.com/2009/10/12/scatter-plots-with-basemap-and-matplotlib/
'''
from mpl_toolkits.basemap import Basemap
from pylab import *
from matplotlib.font_manager import FontProperties
from matplotlib.collections import LineCollection
from matplotlib impor... | bsd-2-clause |
gfyoung/pandas | pandas/core/groupby/generic.py | 1 | 64967 | """
Define the SeriesGroupBy and DataFrameGroupBy
classes that hold the groupby interfaces (and some implementations).
These are user facing as the result of the ``df.groupby(...)`` operations,
which here returns a DataFrameGroupBy object.
"""
from __future__ import annotations
from collections import abc, namedtuple... | bsd-3-clause |
kambysese/mne-python | tutorials/discussions/plot_background_filtering.py | 4 | 48036 | # -*- coding: utf-8 -*-
r"""
.. _disc-filtering:
===================================
Background information on filtering
===================================
Here we give some background information on filtering in general, and
how it is done in MNE-Python in particular.
Recommended reading for practical applications ... | bsd-3-clause |
Djabbz/scikit-learn | sklearn/utils/estimator_checks.py | 1 | 54997 | from __future__ import print_function
import types
import warnings
import sys
import traceback
import pickle
from copy import deepcopy
import numpy as np
from scipy import sparse
import struct
from sklearn.externals.six.moves import zip
from sklearn.externals.joblib import hash, Memory
from sklearn.utils.testing imp... | bsd-3-clause |
jreback/pandas | pandas/tests/groupby/test_function.py | 1 | 35775 | import builtins
from io import StringIO
import numpy as np
import pytest
from pandas.errors import UnsupportedFunctionCall
import pandas as pd
from pandas import DataFrame, Index, MultiIndex, Series, Timestamp, date_range, isna
import pandas._testing as tm
import pandas.core.nanops as nanops
from pandas.util import ... | bsd-3-clause |
evandromr/stingray | stingray/modeling/parameterestimation.py | 1 | 70252 | from __future__ import print_function, division
__all__ = ["OptimizationResults", "ParameterEstimation", "PSDParEst",
"SamplingResults"]
# check whether matplotlib is installed for easy plotting
try:
import matplotlib.pyplot as plt
from matplotlib.ticker import MaxNLocator
can_plot = True
exce... | mit |
dannyjacobs/PRISim | main/MWA_beamformer_errors_figures_producer.py | 1 | 84130 | import numpy as NP
import copy
from astropy.io import fits
from astropy.io import ascii
from astropy import coordinates as coord
from astropy.coordinates import Galactic, FK5
from astropy import units
import astropy.cosmology as CP
import scipy.constants as FCNST
from scipy import interpolate
import matplotlib.mlab as ... | mit |
mattwthompson/mdtraj | mdtraj/core/trajectory.py | 1 | 79311 | ##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors: Kyle A. Beauchamp, TJ Lane, Jo... | lgpl-2.1 |
3324fr/spinalcordtoolbox | scripts/msct_smooth.py | 1 | 32233 | #!/usr/bin/env python
#########################################################################################
#
# Module containing fitting functions
#
# ---------------------------------------------------------------------------------------
# Copyright (c) 2014 Polytechnique Montreal <www.neuro.polymtl.ca>
# Author... | mit |
mdobrychlop/pyry3d_chimera_extension | Calculate.py | 1 | 37311 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
#
# www.genesilico.pl
#
from numpy import array
from random import uniform
import shutil
from shutil import rmtree
import os
from copy import deepcopy
from Modules.Input... | gpl-3.0 |
mistercrunch/panoramix | superset/config.py | 1 | 48856 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
JGCRI/gcam-driver | cassandra/components.py | 1 | 48620 | """Definitions for the components for models participating in the framework.
A "component" is a functional unit that performs a specific step in
the coupled model processing pipeline. Generally, a component will
correspond to one of the models being coupled, but components can also
implement utility processes, such a... | apache-2.0 |
pmacosta/pplot | pplot/figure.py | 1 | 45520 | """
Generate presentation-quality plots.
[[[cog
import os, sys
if sys.hexversion < 0x03000000:
import __builtin__
else:
import builtins as __builtin__
sys.path.append(os.environ['TRACER_DIR'])
import trace_ex_plot_figure
exobj_plot = trace_ex_plot_figure.trace_module(no_print=True)
]]]
[[[end]]]
"""
# figure.p... | mit |
anntzer/scikit-learn | sklearn/ensemble/_gb.py | 2 | 72848 | """Gradient Boosted Regression Trees.
This module contains methods for fitting gradient boosted regression trees for
both classification and regression.
The module structure is the following:
- The ``BaseGradientBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regressi... | bsd-3-clause |
GuessWhoSamFoo/pandas | pandas/core/groupby/groupby.py | 1 | 68506 | """
Provide the groupby split-apply-combine paradigm. Define the GroupBy
class providing the base-class of operations.
The SeriesGroupBy and DataFrameGroupBy sub-class
(defined in pandas.core.groupby.generic)
expose these user-facing objects to provide specific functionailty.
"""
import collections
from contextlib im... | bsd-3-clause |
tuqc/lyman | lyman/workflows/preproc.py | 1 | 42536 | """Preprocessing workflow definition."""
import os
import os.path as op
import numpy as np
import pandas as pd
import nibabel as nib
import matplotlib as mpl
import matplotlib.pyplot as plt
from sklearn import decomposition as decomp
from moss.mosaic import Mosaic
import seaborn as sns
from nipype.interfaces import ... | bsd-3-clause |
fruce-ki/utility_scripts | archive/catch/fileutilities.py | 1 | 69273 | #!/usr/bin/env python3
"""fileutilities.py
Author: Kimon Froussios
Last reviewed: 20/02/2020
This module is a solution for Frequently Performed Generic Tasks that involve
multiple files:
* repeating a command for a range of files (not currently parallelized),
* accessing and restructuring (multiple) delimited files.... | mit |
pizzathief/scipy | scipy/stats/tests/test_morestats.py | 2 | 81056 | # Author: Travis Oliphant, 2002
#
# Further enhancements and tests added by numerous SciPy developers.
#
import warnings
import numpy as np
from numpy.random import RandomState
from numpy.testing import (assert_array_equal,
assert_almost_equal, assert_array_less, assert_array_almost_equal,
assert_, assert_all... | bsd-3-clause |
geophysics/mtpy | mtpy/imaging/pek1dplotting.py | 1 | 40985 | # -*- coding: utf-8 -*-
"""
Created on Thu Jun 05 14:59:04 2014
@author: a1655681
"""
import os
import os.path as op
import numpy as np
import matplotlib.pyplot as plt
import scipy.interpolate as si
import mtpy.modeling.pek1dclasses as pek1dc
import mtpy.core.edi as mtedi
import mtpy.utils.elevation_data as ed
from m... | gpl-3.0 |
bmazin/ARCONS-pipeline | photonlist/photlist.py | 1 | 31331 | '''
Author: Julian van Eyken Date: May 7 2013
For handling calibrated output photon lists.
'''
import time
import numpy as np
import os.path
import warnings
import tables
from astropy import constants, units
import matplotlib.pylab as mpl
from headers import pipelineFlags, ArconsHeaders
from util import... | gpl-2.0 |
yavalvas/yav_com | build/matplotlib/lib/mpl_toolkits/axes_grid1/axes_grid.py | 1 | 31842 | from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
import matplotlib.cbook as cbook
import matplotlib.pyplot as plt
import matplotlib.axes as maxes
#import matplotlib.colorbar as mcolorbar
from . import colorbar as mcolorbar
import matplotlib as mp... | mit |
p-lauer/spotpy | spotpy/signatures.py | 1 | 45650 | # -*- coding: utf-8 -*-
'''
Copyright (c) 2015 by Tobias Houska
This file is part of Statistical Parameter Estimation Tool (SPOTPY).
:author: Benjamin Manns
This tool holds functions for caclulation of hyrological signatures. It takes Python-lists of simulation and observation data
returns the hydrological signature... | mit |
evanl/vesa_tough_comparison | tough/t2/t2_input_funcs.py | 1 | 68764 | #Author - Evan Leister
import numpy as np
import matplotlib.pyplot as plt
import matplotlib
from mpl_toolkits.mplot3d import Axes3D
import read_eclipse as re
import eclipse_cells as ec
from time import clock
import string
from subprocess import call
class T2Input(object):
def __init__(self, sim_title, cp_vals, two... | mit |
AlexanderWard1/VC3D | Integral Methods/addViscous_Bowcutt.py | 1 | 61090 | #%% addViscous.py
"""
Viscous correction code to augment Cart3D solutions.
Alexander Ward
April 2017
"""
#http://www.dtic.mil/dtic/tr/fulltext/u2/a045367.pdf
from math import exp, log, asin, sin
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
from scipy.optimize import brentq... | mit |
JudoWill/glue | glue/core/data.py | 1 | 36278 | from __future__ import absolute_import, division, print_function
import operator
import logging
import numpy as np
import pandas as pd
from .contracts import contract
from .coordinates import Coordinates
from .visual import VisualAttributes
from .visual import COLORS
from .exceptions import IncompatibleAttribute
fro... | bsd-3-clause |
danakj/chromium | tools/android/appstats.py | 6 | 37098 | #!/usr/bin/python
# Copyright 2015 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
# 'top'-like memory/network polling for Android apps.
import argparse
import curses
import os
import re
import sys
import time
from opera... | bsd-3-clause |
msyriac/orphics | orphics/stats.py | 1 | 31385 | from __future__ import print_function
import numpy as np
import time, warnings
import itertools
import scipy
from scipy.stats import binned_statistic as binnedstat,chi2
from scipy.optimize import curve_fit
import itertools
from pyfisher import FisherMatrix
class InverseTransformSampling(object):
# Sample from an ... | bsd-2-clause |
chrisbarber/dask | dask/array/core.py | 1 | 124512 | from __future__ import absolute_import, division, print_function
from bisect import bisect
from collections import Iterable, MutableMapping
from collections import Iterator
from functools import partial, wraps
import inspect
from itertools import product
from numbers import Number
import operator
from operator import ... | bsd-3-clause |
gfyoung/scipy | scipy/signal/windows/windows.py | 1 | 73520 | """The suite of window functions."""
from __future__ import division, print_function, absolute_import
import operator
import warnings
import numpy as np
from scipy import fftpack, linalg, special
from scipy._lib.six import string_types
__all__ = ['boxcar', 'triang', 'parzen', 'bohman', 'blackman', 'nuttall',
... | bsd-3-clause |
zachmath/HFODD_scripts | cmaps_discretize.py | 1 | 50769 | # First portion cannibalized from this StackOverflow answer:
# https://stackoverflow.com/a/3380754/11232577
#
# Run them in a Python interpreter as follows:
# execfile("/home/zachary/Desktop/cmaps_discretize.py"); list_colors(viridis,5)
def clamp(x):
return max(0, min(x, 255))
def rgb2hex(cmap,ind):
r,g,... | gpl-3.0 |
APMonitor/arduino | 2_Regression/Higher_order_MIMO/APM_Python/apm.py | 2 | 36404 | # Import
import csv
import math
import os
import random
import string
import time
import webbrowser
from contextlib import closing
import sys
# Get Python version
ver = sys.version_info[0]
#print('Version: '+str(ver))
if ver==2: # Python 2
import urllib
else: # Python 3+
import urll... | apache-2.0 |
louisLouL/pair_trading | capstone_env/lib/python3.6/site-packages/matplotlib/font_manager.py | 2 | 47838 | """
A module for finding, managing, and using fonts across platforms.
This module provides a single :class:`FontManager` instance that can
be shared across backends and platforms. The :func:`findfont`
function returns the best TrueType (TTF) font file in the local or
system font path that matches the specified :class... | mit |
jseabold/statsmodels | statsmodels/stats/diagnostic.py | 4 | 67688 | # -*- coding: utf-8 -*-
"""
Various Statistical Tests
Author: josef-pktd
License: BSD-3
Notes
-----
Almost fully verified against R or Gretl, not all options are the same.
In many cases of Lagrange multiplier tests both the LM test and the F test is
returned. In some but not all cases, R has the option to choose the ... | bsd-3-clause |
sics-sse/moped | position/Optipos/OptiposTools.py | 1 | 33999 | '''
Created on 26 nov. 2015
@author: Jakob Axelsson
'''
from OptiposLib import *
import datetime
import sys
import matplotlib.pyplot as plt
def rotateInt(pos, angle, delta):
# Calculates the position of pos in a coordinate system which is a translation by delta and a rotation of angle (in degre... | gpl-2.0 |
pydata/pandas-gbq | pandas_gbq/gbq.py | 1 | 43172 | import logging
import time
import warnings
from datetime import datetime
import numpy as np
# Required dependencies, but treat as optional so that _test_google_api_imports
# can provide a better error message.
try:
from google.api_core import exceptions as google_exceptions
from google.cloud import bigquery
e... | bsd-3-clause |
cuemacro/findatapy | findatapy/market/ioengine.py | 1 | 44510 | __author__ = 'saeedamen' # Saeed Amen
#
# Copyright 2016 Cuemacro
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the
# License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | apache-2.0 |
nicproulx/mne-python | mne/decoding/csp.py | 2 | 30012 | # -*- coding: utf-8 -*-
# Authors: Romain Trachel <trachelr@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Alexandre Barachant <alexandre.barachant@gmail.com>
# Clemens Brunner <clemens.brunner@gmail.com>
# Jean-Remi King <jeanremi.king@gmail.com>
#
# Lic... | bsd-3-clause |
kalepeterson/ghdata | ghdata/ghdata.py | 1 | 32687 | #SPDX-License-Identifier: MIT
import sqlalchemy as s
import pandas as pd
import requests
import sys
if (sys.version_info > (3, 0)):
import urllib.parse as url
else:
import urllib as url
import json
import re
class GHData(object):
"""Uses GHTorrent and other GitHub data sources and returns dataframes with... | mit |
jfinkels/networkx | networkx/drawing/nx_pylab.py | 3 | 33252 | # Copyright (C) 2004-2016 by
# Aric Hagberg <hagberg@lanl.gov>
# Dan Schult <dschult@colgate.edu>
# Pieter Swart <swart@lanl.gov>
# All rights reserved.
# BSD license.
#
# Author: Aric Hagberg (hagberg@lanl.gov)
"""
**********
Matplotlib
**********
Draw networks with matplotlib.
See Also
--------
m... | bsd-3-clause |
nguy/AWOT | awot/graph/radar_vertical.py | 1 | 30560 | """
awot.graph.radar_vertical
=========================
A group of scripts to create vertical radar plots.
"""
# FUNCTIONS::
# polar_sweep - Plot polar coordinate data on polar coordinate axis
# polar_sweep_grid - Plotting transformed data to Cartesian output
# sweep_to_Cart - Polar coordinates transformed to Cartesia... | gpl-2.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/tests/test_axes.py | 1 | 52178 | from nose.tools import assert_equal
from nose.tools import assert_raises
import numpy as np
from numpy import ma
import matplotlib
from matplotlib.testing.decorators import image_comparison, cleanup
import matplotlib.pyplot as plt
@image_comparison(baseline_images=['formatter_ticker_001',
... | gpl-3.0 |
cjayb/mne-python | mne/viz/raw.py | 1 | 47547 | """Functions to plot raw M/EEG data."""
# Authors: Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.fi>
# Daniel McCloy <dan.mccloy@gmail.com>
#
# License: Simplified BSD
import copy
from functools import partial
import numpy as np
from ..annotations import _annotat... | bsd-3-clause |
adamrp/qiita | qiita_db/metadata_template/test/test_sample_template.py | 1 | 94081 | # -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
linan7788626/hackday_03112016 | sunpy/sunpy__synthetic_image.py | 1 | 40160 | #!/usr/bin/env python
""" Defines the synthetic_image class to add image realism to the idealized sunrise images.
The synthetic_image class defines a number of routines to take the original image and
convolve it with some psf function, add sky noise, rebin to an appropate pixel scale
(based on telescope), scale to an ... | mit |
goldmedal/spark | python/pyspark/sql/functions.py | 1 | 131992 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
MTgeophysics/mtpy | mtpy/imaging/mtplottools.py | 1 | 75755 | # -*- coding: utf-8 -*-
"""
===========
mtplottools
===========
Contains helper functions and classes for plotting
@author: jpeacock-pr
"""
# ==============================================================================
import numpy as np
# import mtpy.core.mt
from mtpy.core import mt
import mtpy.core.z as mtz
im... | gpl-3.0 |
chrsrds/scikit-learn | sklearn/tree/tests/test_tree.py | 1 | 68270 | """
Testing for the tree module (sklearn.tree).
"""
import copy
import pickle
from functools import partial
from itertools import product
import struct
import pytest
import numpy as np
from scipy.sparse import csc_matrix
from scipy.sparse import csr_matrix
from scipy.sparse import coo_matrix
from sklearn.random_proje... | bsd-3-clause |
anntzer/scikit-learn | sklearn/datasets/_samples_generator.py | 7 | 61271 | """
Generate samples of synthetic data sets.
"""
# Authors: B. Thirion, G. Varoquaux, A. Gramfort, V. Michel, O. Grisel,
# G. Louppe, J. Nothman
# License: BSD 3 clause
import numbers
import array
from collections.abc import Iterable
import numpy as np
from scipy import linalg
import scipy.sparse as sp
fro... | bsd-3-clause |
kubeflow/kfserving | python/kfserving/test/test_v1beta1_inference_service_list.py | 1 | 38731 | # Copyright 2020 kubeflow.org.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,... | apache-2.0 |
hobson/pug-invest | pug/invest/sandbox/sim.py | 1 | 38287 | #!/usr/bin/env python
from __future__ import division, unicode_literals
"""Simulate a sequence of trades and portfolio performance over time
Examples:
$ python sim.py trade 50000 orders.csv values.csv
# input file
$ cat orders.csv:
2008, 12, 3, AAPL, BUY, 130
2008, 12, 8, AAPL, SELL, 130
2008, 12, 5, IBM,... | mit |
kevin-intel/scikit-learn | sklearn/mixture/_bayesian_mixture.py | 3 | 33417 | """Bayesian Gaussian Mixture Model."""
# Author: Wei Xue <xuewei4d@gmail.com>
# Thierry Guillemot <thierry.guillemot.work@gmail.com>
# License: BSD 3 clause
import math
import numpy as np
from scipy.special import betaln, digamma, gammaln
from ._base import BaseMixture, _check_shape
from ._gaussian_mixture im... | bsd-3-clause |
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