repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
aestrivex/mne-python | mne/epochs.py | 1 | 92751 | """Tools for working with epoched data"""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Daniel Strohmeier <daniel.strohmeier@tu-ilmenau.de>
# Denis Engemann <denis.engemann@gmail.com>
# Mainak Jas <mainak@neuro... | bsd-3-clause |
salotz/mast | mastic/system.py | 1 | 41717 | """ The system module. """
import collections as col
import itertools as it
from mastic.molecule import Atom, Bond, Molecule, AtomType, BondType, MoleculeType
from mastic.selection import SelectionMember, SelectionsList, IndexedSelection, GenericSelection
import mastic.config.system as masticsysconfig
__all__ = ['o... | mit |
glemaitre/protoclass | protoclass/classification/classification.py | 1 | 70181 | """Module to perform classification."""
import multiprocessing
import numpy as np
from collections import Counter
from collections import namedtuple
from random import sample
from sklearn.metrics import roc_curve
from sklearn.metrics import roc_auc_score
from imblearn.over_sampling import RandomOverSampler
from i... | gpl-2.0 |
jhamrick/bayesian-quadrature | bayesian_quadrature/bq.py | 1 | 33157 | import numpy as np
import logging
import matplotlib.pyplot as plt
import scipy.stats
from copy import copy, deepcopy
from gp import GP, GaussianKernel, PeriodicKernel
from . import bq_c
from . import linalg_c as la
from . import util
logger = logging.getLogger("bayesian_quadrature")
DTYPE = np.dtype('float64')
MIN =... | mit |
bdh1011/wau | venv/lib/python2.7/site-packages/pandas/core/ops.py | 1 | 44317 | """
Arithmetic operations for PandasObjects
This is not a public API.
"""
# necessary to enforce truediv in Python 2.X
from __future__ import division
import operator
import numpy as np
import pandas as pd
from pandas import compat, lib, tslib
import pandas.index as _index
from pandas.util.decorators import Appender
i... | mit |
plotly/python-api | packages/python/plotly/plotly/graph_objs/carpet/_aaxis.py | 1 | 81529 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Aaxis(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "carpet"
_path_str = "carpet.aaxis"
_valid_props = {
"arraydtick",
"arraytick0... | mit |
harisbal/pandas | pandas/tests/internals/test_internals.py | 1 | 48745 | # -*- coding: utf-8 -*-
# pylint: disable=W0102
from datetime import datetime, date
import operator
import sys
import pytest
import numpy as np
import re
from distutils.version import LooseVersion
import itertools
from pandas import (Index, MultiIndex, DataFrame, DatetimeIndex,
Series, Categorical... | bsd-3-clause |
jamesrobertlloyd/automl-phase-2 | managers.py | 1 | 63020 | from __future__ import division
import glob
import shutil
__author__ = 'James Robert Lloyd, Emma Smith'
__description__ = 'Objects to coordinate stuff'
import constants
import os
import time
from collections import defaultdict
import psutil
# import matplotlib
import matplotlib.pyplot as plt
import functools
import p... | mit |
chaubold/hytra | hytra/core/trackingfeatures.py | 1 | 31878 | import sys
sys.path.append('../.')
sys.path.append('.')
import h5py
import pgmlink as track
import numpy as np
import math
import os
import os.path as path
import argparse
from hytra.util.progressbar import ProgressBar
def get_feature(h5file, feature_path, object_id):
if not feature_path in h5file:
raise E... | mit |
MartinHeinz/training-and-food-tracker | libs/garden/matplotlib/backend_kivy.py | 1 | 49849 | '''
Backend Kivy
=====
.. image:: images/backend_kivy_example.jpg
:align: right
The :class:`FigureCanvasKivy` widget is used to create a matplotlib graph.
This widget has the same properties as
:class:`kivy.ext.mpl.backend_kivyagg.FigureCanvasKivyAgg`. FigureCanvasKivy
instead of rendering a static image, uses th... | mit |
hail-is/hail | hail/python/test/hail/table/test_table.py | 1 | 63750 | import unittest
import pandas as pd
import pyspark.sql
import pytest
import random
import hail as hl
import hail.expr.aggregators as agg
from hail.utils import new_temp_file
from hail.utils.java import Env
from ..helpers import *
from test.hail.matrixtable.test_file_formats import create_all_values_datasets
setUpMod... | mit |
rodluger/everest | everest/basecamp.py | 1 | 41486 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
'''
:py:mod:`basecamp.py` - The Everest base class
----------------------------------------------
The :py:obj:`everest` engine. All :py:obj:`everest` models
inherit from :py:class:`Basecamp`.
'''
from __future__ import division, print_function, absolute_import, \
uni... | mit |
gofortargets/CNN_brandsafety | knx/text/classifier/base.py | 1 | 66928 | #!/usr/bin/python
import argparse
import json
import os
import pickle
import sys
from functools import partial
from multiprocessing import Pipe, Process, cpu_count
import numpy
from knx.metrics.confusionmatrix import ConfusionMatrix
from knx.text.doc_to_feature import DocToFeature, tf_to_tfidf, tf_to_okapi, tf_to_midf... | apache-2.0 |
aeklant/scipy | scipy/stats/_distn_infrastructure.py | 2 | 127400 | #
# Author: Travis Oliphant 2002-2011 with contributions from
# SciPy Developers 2004-2011
#
from scipy._lib._util import getfullargspec_no_self as _getfullargspec
import sys
import keyword
import re
import types
import warnings
from itertools import zip_longest
from scipy._lib import doccer
from ._distr_p... | bsd-3-clause |
ryfeus/lambda-packs | Pandas_numpy/source/pandas/core/indexes/base.py | 1 | 145077 | import datetime
import warnings
import operator
import numpy as np
from pandas._libs import (lib, index as libindex, tslib as libts,
algos as libalgos, join as libjoin,
Timestamp, Timedelta, )
from pandas._libs.lib import is_datetime_array
from pandas._libs.tslibs im... | mit |
hulingfei/Shaka | bia-660/final/experiment_reviews.py | 1 | 107408 | # -*- coding: utf-8 -*-
"""
Created on Sat Nov 07 00:08:44 2015
@author: Lingfei Hu
"""
import re
import HTMLParser
from sklearn.feature_extraction.text import CountVectorizer
from sklearn.feature_extraction.text import TfidfTransformer
from sklearn.neighbors import KNeighborsClassifier
from sklearn.naive_bayes impor... | apache-2.0 |
lvniqi/tianchi_power | code/preprocess.py | 1 | 32964 | #!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Sat May 13 17:36:18 2017
@author: boweiy
"""
from sklearn.model_selection import train_test_split
import pandas as pd
import numpy as np
import os
import xgboost as xgb
from multiprocessing import Pool as m_Pool
from sklearn import preprocessing
from sklea... | mit |
MattWellie/DDG2P_pure | frameshift_comp_with_probes.py | 1 | 31409 | """
This script will take three inputs;
- A CSV file containing CNV details, exported directly from Cartagenia
- A pickle file which contains the chromosomal coordinates of all DDG2P genes
- A BED file contining the probe sites of the array
The contents of these files will be cross referenced in severa... | gpl-3.0 |
mMPI-MRI/TractLAS | utils.py | 1 | 74376 | # -*- coding: utf-8 -*-
"""
Created on Thu Feb 23, 2017
Compute large connectomes using mrtrix and sparse matrices
@author: Christopher Steele
"""
from __future__ import division # to allow floating point calcs of number of voxels
from pandas import read_csv
def natural_sort(l):
"""
Returns alphanumerical... | gpl-3.0 |
Dennett/asp | asp/distributions.py | 1 | 46633 | # -*- coding: utf-8 -*-
"""
-------------------------------
**distributions**
-------------------------------
Description
-----------
Create shortest path distributions for path families and edges.
Copyright (C) 2017 Michael W. Ramsey <michael.ramsey@gmail.com>
License
--------
This program is free software: you ca... | gpl-3.0 |
witgo/spark | python/pyspark/sql/session.py | 1 | 31079 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
TNT-Samuel/Coding-Projects | DNS Server/Source/Lib/site-packages/dask/dataframe/groupby.py | 2 | 44775 | from __future__ import absolute_import, division, print_function
import collections
import itertools as it
import operator
import warnings
import numpy as np
import pandas as pd
from .core import (DataFrame, Series, aca, map_partitions, merge,
new_dd_object, no_default, split_out_on_index)
from .m... | gpl-3.0 |
tochikuji/pyPyrTools | pyrtools/pyPyrTools.py | 1 | 80812 | import numpy
#import pyPyrUtils as ppu
from . import pyPyrUtils
#import pyPyrCcode
import math
import matplotlib.cm
import os
import scipy.misc
import cmath
from . import JBhelpers
import pylab
import copy
class pyramid: # pyramid
# properties
pyr = []
pyrSize = []
pyrType = ''
image = ''
# ... | mit |
SeanMcGrath/ScopeOut | scopeout/widgets.py | 1 | 62717 | """
ScopeOut Widgets
Widget classes for Scopeout GUI.
Sean McGrath, 2014
"""
import os
import re
import logging
from numpy import multiply, amax
from PyQt5 import QtGui, QtWidgets, QtCore
from matplotlib.figure import Figure
from matplotlib.widgets import Cursor
from matplotlib.backends.backend_qt5agg import Figure... | mit |
bdh1011/wau | venv/lib/python2.7/site-packages/notebook/notebookapp.py | 1 | 42986 | # coding: utf-8
"""A tornado based IPython notebook server."""
# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
from __future__ import absolute_import, print_function
import base64
import datetime
import errno
import importlib
import io
import json
import logging
i... | mit |
rsmailach/SRPT | ClassBased_SingleServer_Catastrophic.py | 1 | 41746 | #----------------------------------------------------------------------#
# ApproxSRPTE.py
#
# This application simulates a single server with Poisson arrivals
# and processing times of a general distribution. There are errors in
# time estimates within a range. Arrivals are assigned to SRPT classes
# using the methods ... | mit |
jjdmol/LOFAR | CEP/PyBDSM/src/python/functions.py | 1 | 74920 | # some functions
def poly(c,x):
""" y = Sum { c(i)*x^i }, i=0,len(c)"""
import numpy as N
y=N.zeros(len(x))
for i in range(len(c)):
y += c[i]*(x**i)
return y
def sp_in(c, x):
""" Spectral index in freq-flux space """
import numpy as N
order = len(c)-1
if order == 1:
... | gpl-3.0 |
Spiderlover/Toontown | toontown/chat/WhiteListData.py | 1 | 594015 | WHITELIST = [
'',
'!',
'"',
'$',
'$1',
'$10',
'$5',
'%',
'%s',
'&',
"'",
"'boss",
"'cause",
"'course",
"'ello",
"'em",
"'n",
"'s",
'(',
'(:',
'(=<',
'(>^.^)>',
')',
'):',
')=<',
'*',
'*scared',
'+',
',',
... | mit |
jseabold/statsmodels | statsmodels/duration/hazard_regression.py | 4 | 58578 | """
Implementation of proportional hazards regression models for duration
data that may be censored ("Cox models").
References
----------
T Therneau (1996). Extending the Cox model. Technical report.
http://www.mayo.edu/research/documents/biostat-58pdf/DOC-10027288
G Rodriguez (2005). Non-parametric estimation in ... | bsd-3-clause |
plotly/python-api | packages/python/plotly/plotly/express/_chart_types.py | 1 | 32102 | from ._core import make_figure
from ._doc import make_docstring
import plotly.graph_objs as go
def scatter(
data_frame=None,
x=None,
y=None,
color=None,
symbol=None,
size=None,
hover_name=None,
hover_data=None,
custom_data=None,
text=None,
facet_row=None,
facet_col=None... | mit |
qsnake/gpaw | gpaw/transport/analysor.py | 1 | 48167 | from gpaw.transport.selfenergy import LeadSelfEnergy
from gpaw.transport.tools import get_matrix_index, aa1d, aa2d, sum_by_unit, \
dot, fermidistribution, eig_states_norm, \
find, get_atom_indices, dagger, \
write, gather_nd... | gpl-3.0 |
ChrisThoung/fsic | test_fsic.py | 1 | 78338 | # -*- coding: utf-8 -*-
"""
test_fsic
=========
Test suite for FSIC.
Example equations/models are adapted from:
Almon, C. (2017)
*The craft of economic modeling*,
Third, enlarged edition, *Inforum*
http://www.inforum.umd.edu/papers/TheCraft.html
Godley, W., Lavoie, M. (2007)
*Monetary economi... | mit |
agile-geoscience/welly | welly/curve.py | 1 | 30920 | """
Defines log curves.
:copyright: 2021 Agile Scientific
:license: Apache 2.0
"""
from __future__ import division
import numpy as np
from scipy.interpolate import interp1d
import matplotlib.pyplot as plt
import matplotlib as mpl
from matplotlib.patches import PathPatch
import warnings
from . import utils
class ... | apache-2.0 |
maciejkula/scipy | scipy/signal/signaltools.py | 1 | 75779 | # Author: Travis Oliphant
# 1999 -- 2002
from __future__ import division, print_function, absolute_import
import warnings
import threading
from . import sigtools
from scipy.lib.six import callable
from scipy.lib._version import NumpyVersion
from scipy import linalg
from scipy.fftpack import (fft, ifft, ifftshift, ff... | bsd-3-clause |
asdf2014/superset | superset/viz.py | 1 | 52742 | """This module contains the "Viz" objects
These objects represent the backend of all the visualizations that
Superset can render.
"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import copy
import hashlib
import l... | apache-2.0 |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_New_Server_0706_2015_3.py | 1 | 47381 |
# coding: utf-8
# In[5]:
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
gsnyder206/synthetic-image-morph | statmorph_gfs.py | 1 | 82960 | import math
import string
import sys
import struct
import matplotlib
matplotlib.use('TkAgg')
import matplotlib.pyplot as pyplot
import matplotlib.colors as pycolors
import matplotlib.cm as cm
import matplotlib.patches as patches
import numpy as np
#import cPickle
import scipy.ndimage
import scipy.stats as ss
import sci... | gpl-2.0 |
rs2/pandas | pandas/tests/indexing/test_indexing.py | 1 | 37462 | """ test fancy indexing & misc """
from datetime import datetime
import re
import weakref
import numpy as np
import pytest
from pandas.core.dtypes.common import is_float_dtype, is_integer_dtype
import pandas as pd
from pandas import DataFrame, Index, NaT, Series
import pandas._testing as tm
from pandas.core.indexin... | bsd-3-clause |
jaeilepp/mne-python | mne/evoked.py | 1 | 51449 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Andrew Dykstra <andrew.r.dykstra@gmail.com>
# Mads Jensen <mje.mads@gmail.com>
#
# License: BSD (... | bsd-3-clause |
cosmicBboy/Urbanscape | UrbanScape/urbanscape.py | 1 | 31449 | import numpy as np
import numpy.random as random
import matplotlib.pyplot as pyplot
#Urbanscape v1.4
#Changes:
# randomized the income and rent distribution functions with a random multiplier
# added an element of randomness to the FAFH and FFR functions using a random float multiplier
# changed the FFR function such... | mit |
clawpack/clawpack-4.x | python/pyclaw/plotters/data.py | 1 | 58418 | #!/usr/bin/env python
# encoding: utf-8
# ======================================================================
# Package: pyclaw.plotters
# File: data.py
# Created: Aug 7, 2009
# Author: R.J. LeVeque
# ============================================================================
"""
Plotting Da... | bsd-3-clause |
cdegroc/scikit-learn | sklearn/gaussian_process/gaussian_process.py | 1 | 32730 | #!/usr/bin/python
# -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# License: BSD style
import numpy as np
from scipy import linalg, optimize, rand
from ..base import BaseEstimator, RegressorMixin
from ..metrics.pairwise import m... | bsd-3-clause |
gfyoung/scipy | scipy/interpolate/_bsplines.py | 2 | 34756 | from __future__ import division, print_function, absolute_import
import functools
import operator
import numpy as np
from scipy._lib.six import string_types
from scipy.linalg import (get_lapack_funcs, LinAlgError,
cholesky_banded, cho_solve_banded)
from . import _bspl
from . import _fitpack_... | bsd-3-clause |
e2crawfo/dps | dps/datasets/atari.py | 1 | 30355 | import gym
import numpy as np
import os
import tensorflow as tf
import matplotlib.pyplot as plt
from collections import defaultdict
from pprint import pprint
from scipy import optimize
from gym_recording import scan_recorded_traces
from dps import cfg
from dps.datasets.base import ImageDataset, ArrayFeature, ImageFeat... | apache-2.0 |
jcornford/pyecog | pyecog/visualisation/pyecog_main_gui.py | 1 | 59431 | import sys
import os
import bisect
import traceback
import time
import numpy as np
import pandas as pd
import pickle as p
from PyQt5 import QtGui, QtWidgets#,# uic
from PyQt5.QtCore import QThread, pyqtSignal, Qt, QRect, QTimer
from scipy import signal, stats
import pyqtgraph as pg
import inspect
import h5py
try: # f... | mit |
massmutual/scikit-learn | sklearn/linear_model/coordinate_descent.py | 1 | 76509 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
from abc import ABCMeta, abstractmethod
import n... | bsd-3-clause |
dotsdl/seaborn | seaborn/axisgrid.py | 1 | 48212 | from __future__ import division
from itertools import product
import numpy as np
import pandas as pd
import matplotlib as mpl
import matplotlib.pyplot as plt
from six import string_types
from . import utils
from .palettes import color_palette
class Grid(object):
"""Base class for grids of subplots."""
_marg... | bsd-3-clause |
astrotuvi/pyplate | pyplate/process/sources.py | 1 | 30440 | import os
import glob
import shutil
import sys
import math
import datetime as dt
import subprocess as sp
import numpy as np
import warnings
import xml.etree.ElementTree as ET
from astropy import __version__ as astropy_version
from astropy import wcs
from astropy.io import fits, votable
from astropy.table import Table, ... | apache-2.0 |
Haunter17/MIR_SU17 | exp1/exp1k.py | 1 | 335969 | import numpy as np
import tensorflow as tf
import h5py
from sklearn.preprocessing import OneHotEncoder
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import time
startTime = time.time()
print('==> Experiment 1i')
def loadData(filepath):
print('==> Loading data from {}'.format(filepath))
f... | mit |
mikofski/pvsc44-clearsky-aod | PVSC-Clearsky-AOD.py | 1 | 35909 |
# coding: utf-8
# # Use of Measured Aerosol Optical Depth and Precipitable Water to Model Clear Sky Irradiance
# *presented at: 2017 IEEE PVSC-44*
# *by: Mark A. Mikofski, Clifford W. Hansen, William F. Holmgren and Gregory M. Kimball*
#
# ## Introduction
# Predicting irradiance is crucial for developing solar power... | bsd-3-clause |
jseabold/statsmodels | statsmodels/tsa/statespace/tests/test_dynamic_factor.py | 4 | 38900 | """
Tests for VARMAX models
Author: Chad Fulton
License: Simplified-BSD
"""
import os
import re
import warnings
import numpy as np
from numpy.testing import assert_equal, assert_raises, assert_allclose
import pandas as pd
import pytest
from statsmodels.tsa.statespace import dynamic_factor
from .results import result... | bsd-3-clause |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/pandas/tests/test_graphics.py | 1 | 41665 | import nose
import os
import string
from distutils.version import LooseVersion
from datetime import datetime, date, timedelta
from pandas import Series, DataFrame, MultiIndex, PeriodIndex, date_range
from pandas.compat import range, lrange, StringIO, lmap, lzip, u, zip
import pandas.util.testing as tm
from pandas.uti... | gpl-3.0 |
SamWitte/Codds_DarkMatter | src/modulation_band.py | 1 | 57590 | from experiment_HaloIndep import *
from scipy import interpolate
from scipy.optimize import brentq, minimize, brute
from globalfnc import *
from basinhopping import *
from custom_minimizer import *
import matplotlib.pyplot as plt
import os # for speaking
import parallel_map as par
from scipy.stats import poisson
impo... | gpl-2.0 |
canismarko/xanespy | tests/test_importers.py | 1 | 51016 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright © 2016 Mark Wolf
#
# This file is part of Xanespy.
#
# Xanespy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# ... | gpl-3.0 |
zsomko/visualcortex | python/spikes/poster.py | 1 | 45824 | from numpy import *
from numpy.random import *
from plotting.plot_images import *
from plotting.myplot import *
from plotting.covariance_ellipse import *
from spikes.spikes import *
import matplotlib.image as img
import matplotlib.cm as cm
import matplotlib.gridspec as gridspec
def new_g_pairs(make):
# make: make i... | gpl-2.0 |
kevin-intel/scikit-learn | sklearn/feature_extraction/tests/test_text.py | 2 | 50267 | # -*- coding: utf-8 -*-
from collections.abc import Mapping
import re
import pytest
from scipy import sparse
from sklearn.feature_extraction.text import strip_tags
from sklearn.feature_extraction.text import strip_accents_unicode
from sklearn.feature_extraction.text import strip_accents_ascii
from sklearn.feature_ex... | bsd-3-clause |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/io/formats/style.py | 1 | 47229 | """
Module for applying conditional formatting to
DataFrames and Series.
"""
from collections import defaultdict
from contextlib import contextmanager
import copy
from functools import partial
from itertools import product
from uuid import uuid1
import numpy as np
from pandas._config import get_option
from pandas.c... | apache-2.0 |
MTgeophysics/mtpy | mtpy/core/edi_collection.py | 1 | 41748 | # -*- coding: utf-8 -*-
"""
Description:
To compute and encapsulate the properties of a set of EDI files
Author: fei.zhang@ga.gov.au
CreateDate: 2017-04-20
"""
import csv
import glob
import os
import sys
from logging import INFO,DEBUG,WARNING,ERROR
import geopandas as gpd
import matplotlib.pyplot as plt
import num... | gpl-3.0 |
matthew-tucker/mne-python | mne/time_frequency/tfr.py | 2 | 46795 | """A module which implements the time frequency estimation.
Authors : Alexandre Gramfort, alexandre.gramfort@telecom-paristech.fr
Hari Bharadwaj <hari@nmr.mgh.harvard.edu>
License : BSD 3-clause
Morlet code inspired by Matlab code from Sheraz Khan & Brainstorm & SPM
"""
import warnings
from math import sq... | bsd-3-clause |
runt18/nupic | external/linux32/lib/python2.6/site-packages/matplotlib/backends/backend_pdf.py | 1 | 71974 | # -*- coding: iso-8859-1 -*-
"""
A PDF matplotlib backend (not yet complete)
Author: Jouni K Seppänen <jks@iki.fi>
"""
from __future__ import division
import os
import re
import sys
import time
import warnings
import zlib
import numpy as npy
from cStringIO import StringIO
from datetime import datetime
from math impo... | agpl-3.0 |
twdb/sonde | scripts/compute_water_level_filter_salinity.py | 1 | 35995 | """
compute_water_level_filter_saliniy.py
~~~~~~~~
This script is used to:
1- calculate water depth above pressure sensor from pressure reading and coincident barometric pressure measurements.
2- calculate total water depth
3- calculate water surface elevation
4- filter salinity when water level... | bsd-3-clause |
azjps/bokeh | bokeh/charts/data_source.py | 1 | 34233 | """The classes and functionality used to transform data inputs to consistent types."""
# -----------------------------------------------------------------------------
# Copyright (c) 2012 - 2014, Continuum Analytics, Inc. All rights reserved.
#
# Powered by the Bokeh Development Team.
#
# The full license is in the fil... | bsd-3-clause |
ebranca/Mixed | Data_Analysis_Tools/06_pearson_r.py | 1 | 79903 | # -*- coding: utf-8 -*-
import sys
# import io
from collections import OrderedDict
from tabulate import tabulate
import decimal
from decimal import Decimal
import itertools
import numbers
import string
import numpy as np
from scipy import stats
import pandas as pd
#import seaborn as sns
import matplotlib as mpl
impor... | apache-2.0 |
schaunwheeler/wrappers | wrappers/plotting.py | 1 | 51133 | # -*- coding: utf-8 -*-
"""
Created on Thu Aug 7 09:22:34 2014
@author: schaunwheeler
"""
import pandas as pd
import numpy as np
import colorsys
from matplotlib.colors import ColorConverter
import tempfile
import re
import uuid
import bokeh
import bokeh.plotting
import bokeh.colors
import os
from collections import ... | mit |
datapythonista/pandas | pandas/tests/indexing/test_iloc.py | 1 | 46020 | """ test positional based indexing with iloc """
from datetime import datetime
import re
from warnings import (
catch_warnings,
simplefilter,
)
import numpy as np
import pytest
import pandas.util._test_decorators as td
from pandas import (
Categorical,
CategoricalDtype,
DataFrame,
Index,
... | bsd-3-clause |
UMN-Hydro/GSFLOW_pre-processor | python_scripts/GSFLOW_print_PRMSparamfile4.py | 1 | 44605 | # -*- coding: utf-8 -*-
"""
Created on Tue Sep 12 22:21:56 2017
Based on: GSFLOW_print_PRMSparamfile4.m
@author: gcng
"""
import numpy as np # matlab core
import scipy as sp # matlab toolboxes
import matplotlib.pyplot as plt # matlab-like plots
import os # os functions
import pandas as pd # for data structures and r... | gpl-3.0 |
fspaolo/scikit-learn | sklearn/decomposition/dict_learning.py | 2 | 40463 | """ Dictionary learning
"""
from __future__ import print_function
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
from math import sqrt, floor, ceil
import numpy as np
from scipy import linalg
from numpy.lib.stride_tricks import as_strided
f... | bsd-3-clause |
NREL/glmgen | glmgen/feeder.py | 1 | 36373 | #!/usr/bin/env python
import datetime, copy, os, re, warnings
# import networkx as nx
from matplotlib import pyplot as plt
import re
from collections import deque
class GlmFile(dict):
"""
GlmFile is a dict with integer keys (for ordering the file) and dict
values, each of which is an item in a glm file.
... | gpl-2.0 |
ThomasBrouwer/BNMTF | experiments/experiments_toy/convergence/nmtf_np.py | 1 | 61674 | """
Recover the toy dataset using the non-probabilistic NMTF.
We can plot the MSE, R2 and Rp as it converges, on the entire dataset.
We have I=100, J=80, K=5, L=5, and no test data.
"""
import sys, os
project_location = os.path.dirname(__file__)+"/../../../../"
sys.path.append(project_location)
from BNMTF.code.mode... | apache-2.0 |
sniemi/SamPy | resolve/misc/findSlitmaskPosition.py | 1 | 47929 | """
Class to fit spectroscopic observations to a direct image.
The class has been designed for image slicer data where at
the moment three spectra are recorded simultaneously.
The script is flexible enough that the input can contain
either a single pointing or single plus offset positions.
Rotations are not allowed at... | bsd-2-clause |
azjps/bokeh | bokeh/palettes.py | 1 | 80075 | ###########################################################################
# License regarding the Viridis, Magma, Plasma and Inferno colormaps:
# New matplotlib colormaps by Nathaniel J. Smith, Stefan van der Walt,
# and (in the case of viridis) Eric Firing.
#
# The Viridis, Magma, Plasma, and Inferno colormaps are r... | bsd-3-clause |
Kate-Willett/HadISDH_Marine_Build | ANALYSIS_PLOTS/PlotObsDistributions_AUG2018.py | 1 | 47935 | #!/usr/local/sci/bin/python
# PYTHON2.7
#
# Author: Kate Willett
# Created: 23 Aug 2018
# Last update: 23 August 2018
# Location: /data/local/hadkw/HADCRUH2/MARINE/EUSTACEMDS/ANALYSIS_PLOTS/
# GitHub: https://github.com/Kate-Willett/HadISDH_Marine_Build/
# -----------------------
# CODE PURPOSE AND OUTPUT
# -----... | cc0-1.0 |
dsm054/pandas | pandas/core/dtypes/common.py | 2 | 55173 | """ common type operations """
import numpy as np
from pandas._libs import algos, lib
from pandas._libs.interval import Interval
from pandas._libs.tslibs import Period, Timestamp, conversion
from pandas.compat import PY3, PY36, binary_type, string_types, text_type
from pandas.core.dtypes.dtypes import (
Categoric... | bsd-3-clause |
jorgehog/Deux-kMC | scripts/dcviz.py | 1 | 194412 | #DCVIZ
from DCViz_sup import DCVizPlotter
import numpy
import numpy as np
import os
import re
from numpy import exp, floor, ceil
from scipy.stats import linregress
from scipy.optimize import curve_fit
from scipy.special import lambertw
from matplotlib.ticker import FormatStrFormatter, FuncFormatter
from matplotlib im... | gpl-3.0 |
jreback/pandas | pandas/io/stata.py | 1 | 125519 | """
Module contains tools for processing Stata files into DataFrames
The StataReader below was originally written by Joe Presbrey as part of PyDTA.
It has been extended and improved by Skipper Seabold from the Statsmodels
project who also developed the StataWriter and was finally added to pandas in
a once again improv... | bsd-3-clause |
meren/anvio | anvio/trnaidentifier.py | 1 | 89401 | # -*- coding: utf-8
# pylint: disable=line-too-long
"""tRNA identification from input sequence"""
import itertools
import pandas as pd
from tabulate import tabulate
from anvio.errors import TRNAIdentifierError
from anvio.filesnpaths import is_file_exists, is_output_file_writable
from anvio.constants import LONGEST_K... | gpl-3.0 |
plotly/python-api | packages/python/plotly/plotly/figure_factory/_gantt.py | 1 | 34739 | from __future__ import absolute_import
from numbers import Number
import copy
from plotly import exceptions, optional_imports
import plotly.colors as clrs
from plotly.figure_factory import utils
import plotly.graph_objects as go
pd = optional_imports.get_module("pandas")
REQUIRED_GANTT_KEYS = ["Task", "Start", "Fi... | mit |
lexbrandt/plot-csv | plot-csv.py | 1 | 30029 | #! /usr/bin/env python
#! -*- coding:utf-8 -*-
import sys
import csv
import re
import os
import math
import random
import argparse
import re
import prettyplotlib as ppl
import numpy as np
# This is "import matplotlib.pyplot as plt" from the prettyplotlib library
import matplotlib.pyplot as plt
# This is "import ma... | mit |
jreback/pandas | pandas/plotting/_matplotlib/converter.py | 1 | 35528 | import contextlib
import datetime as pydt
from datetime import datetime, timedelta, tzinfo
import functools
from typing import Any, Dict, List, Optional, Tuple
from dateutil.relativedelta import relativedelta
import matplotlib.dates as dates
from matplotlib.ticker import AutoLocator, Formatter, Locator
from matplotlib... | bsd-3-clause |
massgov/incubator-superset | superset/views/core.py | 1 | 84670 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from collections import defaultdict
from datetime import datetime, timedelta
import json
import logging
import pandas as pd
import pickle
import re
import time
import tra... | apache-2.0 |
GuessWhoSamFoo/pandas | pandas/plotting/_core.py | 1 | 128312 | # being a bit too dynamic
# pylint: disable=E1101
from __future__ import division
from collections import namedtuple
from distutils.version import LooseVersion
import re
import warnings
import numpy as np
import pandas.compat as compat
from pandas.compat import lrange, map, range, string_types, zip
from pandas.error... | bsd-3-clause |
joshp123/genx | event_handlers.py | 1 | 39905 | '''
Just a library of the different eventhandler needed in the GUI
File started by: Matts Bjorck
$Rev:: $: Revision of last commit
$Author:: $: Author of last commit
$Date:: $: Date of last commit
'''
import version
__ver... | gpl-3.0 |
atztogo/phonopy | phonopy/cui/phonopy_script.py | 1 | 66553 | # Copyright (C) 2020 Atsushi Togo
# All rights reserved.
#
# This file is part of phonopy.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# * Redistributions of source code must retain the above copyright
# notic... | bsd-3-clause |
datapythonista/pandas | pandas/tests/io/pytables/test_store.py | 2 | 32047 | import datetime
import hashlib
import os
import time
from warnings import (
catch_warnings,
simplefilter,
)
import numpy as np
import pytest
import pandas.util._test_decorators as td
import pandas as pd
from pandas import (
DataFrame,
DatetimeIndex,
Index,
MultiIndex,
Series,
Timestam... | bsd-3-clause |
antoinecarme/pyaf | pyaf/Bench/TS_datasets.py | 1 | 37511 | # Copyright (C) 2016 Antoine Carme <Antoine.Carme@Laposte.net>
# All rights reserved.
# This file is part of the Python Automatic Forecasting (PyAF) library and is made available under
# the terms of the 3 Clause BSD license
import pandas as pd
import numpy as np
import datetime
from datetime import date
# from mem... | bsd-3-clause |
yuanbaowen521/tadbit | _pytadbit/imp/structuralmodels.py | 1 | 123961 | """
19 Jul 2013
"""
from pytadbit.utils.three_dim_stats import calc_consistency, mass_center
from pytadbit.utils.three_dim_stats import dihedral, calc_eqv_rmsd
from pytadbit.utils.three_dim_stats import get_center_of_mass, distance
from pytadbit.utils.tadmaths import calinski_harabasz, nozero_log_list
from pytad... | gpl-3.0 |
MTgeophysics/mtpy | mtpy/modeling/modem/plot_rms_maps.py | 1 | 34831 | """
==================
ModEM
==================
# Generate files for ModEM
# revised by JP 2017
# revised by AK 2017 to bring across functionality from ak branch
Revision History:
brenainn.moushall@ga.gov.au 31-03-2020 13:38:10 AEDT:
- Add ability to plot on background geotiff
- Add ability to wr... | gpl-3.0 |
CamDavidsonPilon/lifelines | lifelines/fitters/cox_time_varying_fitter.py | 1 | 33961 | # -*- coding: utf-8 -*-
from datetime import datetime
import warnings
import time
import numpy as np
import pandas as pd
from scipy import stats
from numpy.linalg import norm, inv
from numpy import sum as array_sum_to_scalar
from scipy.linalg import solve as spsolve, LinAlgError
from autograd import elementwise_g... | mit |
DonBeo/scikit-learn | sklearn/metrics/pairwise.py | 1 | 41696 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck ... | bsd-3-clause |
rabrahm/ceres | feros/ferospipe.py | 1 | 60563 | import sys
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
from pylab import *
base = '../'
sys.path.append(base+"utils/Correlation")
sys.path.append(base+"utils/GLOBALutils")
sys.path.append(base+"utils/OptExtract")
baryc_dir= base+'util... | mit |
LarsDu/DeepPixelMonster | dpixelmonster/dcgan_dtlayers.py | 1 | 32662 | import tensorflow as tf
import matplotlib.pyplot as plt
import numpy as np
import os
from tensorflow.contrib.layers.python.layers import batch_norm as batch_norm
"""
An implementation of Layer Wise Relevance Propagation in Tensorflow
with some other good stuff
Also, includes classes for Deep Convolutional Adverserial... | apache-2.0 |
raincoatrun/basemap | lib/mpl_toolkits/basemap/__init__.py | 1 | 253424 | """
Module for plotting data on maps with matplotlib.
Contains the :class:`Basemap` class (which does most of the
heavy lifting), and the following functions:
:func:`interp`: bilinear interpolation between rectilinear grids.
:func:`maskoceans`: mask 'wet' points of an input array.
:func:`shiftgrid`: shifts globa... | gpl-2.0 |
ljchang/nltools | nltools/stats.py | 1 | 81637 | from __future__ import division
'''
NeuroLearn Statistics Tools
===========================
Tools to help with statistical analyses.
'''
__all__ = ['pearson',
'zscore',
'fdr',
'holm_bonf',
'threshold',
'multi_threshold',
'winsorize',
'trim... | mit |
QTB-HHU/ModelHeatShock | HSM_FunctsOfSimulateClass.py | 1 | 46946 | from mpl_toolkits.mplot3d import axes3d
from matplotlib import cm
from HSM_ODEsSystem10or9eqs import *
from HSM_HSModelClass import *
from HSM_PlottingFunctions import *
import time
def SolveODEsystem(self, DirectControlnuPp, ModifyKset="No", ParamsToBeModif={}, TimeOfMod=vorl, Add3rdmRNA_ARS="No"):
""" Set th... | gpl-3.0 |
frzdian/jaksafe-engine | jaksafe/jaksafe/jakservice/post_processing/report.py | 1 | 42036 | # coding = utf-8
__AUTHOR__ = 'Abdul Somat Budiaji'
import datetime
import os
import sys
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.ticker as ticker
from matplotlib.backends.backend_pdf import PdfPages
from matplotlib.font_manager import FontProperties
from matplotlib.of... | gpl-2.0 |
adykstra/mne-python | mne/channels/layout.py | 1 | 33349 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Marijn van Vliet <w.m.vanvliet@gmail.com>
# Jona Sassenhagen <jona.sass... | bsd-3-clause |
vortex-ape/scikit-learn | sklearn/utils/testing.py | 5 | 34209 | """Testing utilities."""
# Copyright (c) 2011, 2012
# Authors: Pietro Berkes,
# Andreas Muller
# Mathieu Blondel
# Olivier Grisel
# Arnaud Joly
# Denis Engemann
# Giorgio Patrini
# Thierry Guillemot
# License: BSD 3 clause
import os
import inspect
import p... | bsd-3-clause |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/io/tests/test_gbq.py | 1 | 34282 | import re
from datetime import datetime
import nose
import pytz
import platform
from time import sleep
import numpy as np
from distutils.version import StrictVersion
from pandas import compat
from pandas import NaT
from pandas.compat import u, range
from pandas.core.frame import DataFrame
import pandas.io.gbq as gbq... | gpl-2.0 |
cactusbin/nyt | matplotlib/lib/matplotlib/axes.py | 1 | 334492 | from __future__ import division, print_function
import math
import warnings
from operator import itemgetter
import itertools
import numpy as np
from numpy import ma
import matplotlib
rcParams = matplotlib.rcParams
import matplotlib.artist as martist
from matplotlib.artist import allow_rasterization
import matplotlib... | unlicense |
varenius/salsa | Control_program/mapper.py | 1 | 40971 | #!/usr/bin/env python
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.backends.backend_qt4agg import NavigationToolbar2QT as NavigationToolbar2QTAgg
import sys
import ephem
from PyQt4 import QtGui, QtCore
sys.path.append('./')
from telescope import *
from measurement imp... | mit |
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