repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
pathomx/pathomx | pathomx/views.py | 2 | 43143 | # -*- coding: utf-8 -*-
from __future__ import unicode_literals
import logging
logging.debug('Loading views.py')
# Import PyQt5 classes
from .qt import *
import os, re, sys, logging
from collections import OrderedDict
# Pathomx classes
from . import utils
from . import db
import numpy as np
import pandas as pd
fr... | gpl-3.0 |
deapplegate/wtgpipeline | adam_do_multiple_photoz.py | 1 | 40429 | #!/usr/bin/env python
import os
import astropy.io.fits as pyfits
ns_dmp=globals()
def parse_column_file(input,output=None,offsets=None):
f = open(input,'r').readlines()
dict = {}
for l in f:
import re
res = re .split('\s+',l)
print res
if len(res) > 3:
t = {}
... | mit |
jskDr/jamespy | jchem.py | 3 | 51654 | from rdkit import Chem
from rdkit.Chem import AllChem
from rdkit.Chem import Draw
from rdkit import DataStructs
from rdkit.Chem import MACCSkeys
from rdkit.Chem import FragmentCatalog
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import os
# This is James Sungjin Kim's library
im... | mit |
pjryan126/solid-start-careers | store/api/zillow/venv/lib/python2.7/site-packages/pandas/core/generic.py | 1 | 194836 | # pylint: disable=W0231,E1101
import warnings
import operator
import weakref
import gc
import numpy as np
import pandas.lib as lib
import pandas as pd
from pandas.core.base import PandasObject
from pandas.core.index import (Index, MultiIndex, _ensure_index,
InvalidIndexError)
import pan... | gpl-2.0 |
huggingface/pytorch-transformers | templates/adding_a_new_example_script/{{cookiecutter.directory_name}}/run_{{cookiecutter.example_shortcut}}.py | 1 | 36461 | #!/usr/bin/env python
# coding=utf-8
# Copyright {{cookiecutter.authors}} and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://ww... | apache-2.0 |
joegomes/deepchem | deepchem/models/tensorflow_models/__init__.py | 1 | 30137 | """Helper operations and classes for general model building.
"""
from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
import collections
import pickle
import os
import time
import warnings
import numpy as np
import pandas as pd
import tensorflow as tf
import tem... | mit |
DTOcean/dtocean-core | example_data/floating_wave_staggered_layout_scenario.py | 1 | 31891 | # -*- coding: utf-8 -*-
"""
Created on Thu Apr 09 10:39:38 2015
@author: 108630
"""
import os
import numpy as np
import pandas as pd
from datetime import datetime, timedelta
from dtocean_core.utils.moorings import get_moorings_tables
# Note that the electrical folder in the test_data directory should be
# placed i... | gpl-3.0 |
RRCKI/pilot | RunJobHpcEvent.py | 1 | 33653 | # Class definition:
# RunJobHpcEvent
# This class is the base class for the HPC Event Server classes.
# Instances are generated with RunJobFactory via pUtil::getRunJob()
# Implemented as a singleton class
# http://stackoverflow.com/questions/42558/python-and-the-singleton-pattern
import commands
import json
... | apache-2.0 |
dsten/datascience | tests/test_tables.py | 1 | 53150 | import doctest
import re
import pytest
import warnings
import numpy as np
from numpy.testing import assert_array_equal
from datascience import *
import pandas as pd
#########
# Utils #
#########
@pytest.fixture(scope='function')
def table():
"""Setup Scrabble table"""
return Table().with_columns([
'... | bsd-3-clause |
qiime2/qiime2 | qiime2/metadata/tests/test_io.py | 1 | 46619 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2021, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
gfyoung/pandas | pandas/tests/groupby/transform/test_transform.py | 1 | 38285 | """ test with the .transform """
from io import StringIO
import numpy as np
import pytest
from pandas.core.dtypes.common import ensure_platform_int, is_timedelta64_dtype
import pandas as pd
from pandas import (
Categorical,
DataFrame,
MultiIndex,
Series,
Timestamp,
concat,
date_range,
)
i... | bsd-3-clause |
ndingwall/scikit-learn | sklearn/gaussian_process/_gpc.py | 2 | 34789 | """Gaussian processes classification."""
# Authors: Jan Hendrik Metzen <jhm@informatik.uni-bremen.de>
#
# License: BSD 3 clause
from operator import itemgetter
import numpy as np
from scipy.linalg import cholesky, cho_solve, solve
import scipy.optimize
from scipy.special import erf, expit
from ..base import BaseEst... | bsd-3-clause |
perryjohnson/biplaneblade | biplane_blade_lib/prep_stn19_mesh.py | 1 | 30753 | """Write initial TrueGrid files for one biplane blade station.
Usage
-----
start an IPython (qt)console with the pylab flag:
$ ipython qtconsole --pylab
or
$ ipython --pylab
Then, from the prompt, run this script:
|> %run biplane_blade_lib/prep_stnXX_mesh.py
or
|> import biplane_blade_lib/prep_stnXX_mesh
... | gpl-3.0 |
supriyantomaftuh/innstereo | innstereo/layer_properties.py | 1 | 42396 | #!/usr/bin/python3
"""
This module contains the layer properties dialog.
Each dialog window has its own class that controls its behaviour. This module
stores the AboutDialog-, PrintDialog-, StereonetProperties-, LayerProperties-,
and FileChooserParse-class.
"""
from gi.repository import Gtk
import matplotlib.colors ... | gpl-2.0 |
trichter/sito | imaging.py | 1 | 81559 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# by TR
from matplotlib import cbook
from matplotlib.mlab import psd
from matplotlib.ticker import AutoMinorLocator, MaxNLocator
from mpl_toolkits.axes_grid1 import make_axes_locatable
from obspy.core import UTCDateTime
from obspy.core.util import deprecated
from sito.uti... | mit |
d-lee/airflow | airflow/www/views.py | 1 | 87584 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
DGrady/pandas | pandas/core/indexes/multi.py | 1 | 94565 |
# pylint: disable=E1101,E1103,W0232
import datetime
import warnings
from functools import partial
from sys import getsizeof
import numpy as np
from pandas._libs import index as libindex, lib, Timestamp
from pandas.compat import range, zip, lrange, lzip, map
from pandas.compat.numpy import function as nv
from pandas ... | bsd-3-clause |
fidelram/deepTools | deeptools/plotProfile.py | 1 | 38404 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import argparse
import numpy as np
import matplotlib
matplotlib.use('Agg')
matplotlib.rcParams['pdf.fonttype'] = 42
matplotlib.rcParams['svg.fonttype'] = 'none'
import matplotlib.pyplot as plt
from matplotlib.font_manager import FontProperties
from matplotlib ... | gpl-3.0 |
herilalaina/scikit-learn | sklearn/preprocessing/data.py | 1 | 106892 | # Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Olivier Grisel <olivier.grisel@ensta.org>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Eric Martin <eric@ericmart.in>
# Giorgio Patrini <giorgio.patrini@anu.edu.au>
# Lic... | bsd-3-clause |
Erotemic/ibeis | ibeis/other/detectgrave.py | 1 | 103398 | # -*- coding: utf-8 -*-
"""Developer convenience functions for ibs (detections).
TODO: need to split up into sub modules:
consistency_checks
feasibility_fixes
move the export stuff to dbio
then there are also convineience functions that need to be ordered at least
within this file
"""
from __futur... | apache-2.0 |
ryandougherty/mwa-capstone | MWA_Tools/build/matplotlib/lib/matplotlib/backends/backend_gtk.py | 1 | 43162 | from __future__ import division
import os, sys
def fn_name(): return sys._getframe(1).f_code.co_name
try:
import gobject
import gtk; gdk = gtk.gdk
import pango
except ImportError:
raise ImportError("Gtk* backend requires pygtk to be installed.")
pygtk_version_required = (2,4,0)
if gtk.pygtk_version <... | gpl-2.0 |
claesenm/optunity-benchmark | optimizers/tpe/hyperopt_august2013_mod_src/hyperopt_installer/hyperopt-master/hyperopt/mongoexp.py | 2 | 60046 | """
Mongo-based Experiment driver and worker client
===============================================
Components involved:
- mongo
e.g. mongod ...
- driver
e.g. hyperopt-mongo-search mongo://address bandit_json bandit_algo_json
- worker
e.g. hyperopt-mongo-worker --loop mongo://address
Mongo
=====
Mong... | gpl-3.0 |
ahkab/ahkab | ahkab/ahkab.py | 1 | 34309 | #!/usr/bin/env python
# -*- coding: iso-8859-1 -*-
# ahkab.py
# The frontend of the simulator
# Copyright 2006 Giuseppe Venturini
# This file is part of the ahkab simulator.
#
# Ahkab is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Fr... | gpl-2.0 |
AstroVPK/kali | python/kali/mbhb.py | 2 | 53365 | #!/usr/bin/env python
""" Module to model MBHBs.
"""
import numpy as np
import math as math
import scipy.stats as spstats
import scipy.signal.spectral
from scipy.interpolate import UnivariateSpline
import cmath as cmath
import random
import sys as sys
import abc as abc
import psutil as psutil
import types as types
imp... | gpl-2.0 |
blaze/dask | dask/utils.py | 1 | 41623 | from datetime import datetime, timedelta
import functools
import inspect
import os
import shutil
import sys
import tempfile
import re
from errno import ENOENT
from collections.abc import Iterator
from contextlib import contextmanager
from importlib import import_module
from numbers import Integral, Number
from threadin... | bsd-3-clause |
cjayb/mne-python | mne/viz/utils.py | 1 | 129999 | # -*- coding: utf-8 -*-
"""Utility functions for plotting M/EEG data."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Mainak Jas <mainak... | bsd-3-clause |
PanDAWMS/panda-server | pandaserver/daemons/scripts/datasetManager.py | 1 | 54467 | import os
import re
import sys
import time
import datetime
import traceback
import threading
import pandaserver.taskbuffer.ErrorCode
import pandaserver.taskbuffer.ErrorCode
from pandacommon.pandalogger.PandaLogger import PandaLogger
from pandaserver.config import panda_config
from pandaserver.dataservice.DDM import ru... | apache-2.0 |
dricciardelli/vae2vec | def_def_oh_ctc.py | 1 | 37360 | ''' Significant lifting from https://jmetzen.github.io/2015-11-27/vae.html '''
import time
import numpy as np
import tensorflow as tf
from tensorflow.python.ops import rnn
import random
import matplotlib.pyplot as plt
import re, string
from sklearn.feature_extraction.text import CountVectorizer
from collections impo... | mit |
gfyoung/pandas | pandas/tests/computation/test_eval.py | 1 | 72020 | from distutils.version import LooseVersion
from functools import reduce
from itertools import product
import operator
from typing import Dict, List, Type
import warnings
import numpy as np
import pytest
from pandas.compat import is_platform_windows, np_version_under1p17
from pandas.errors import PerformanceWarning
im... | bsd-3-clause |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/io/tests/json/test_ujson.py | 1 | 56092 | # -*- coding: utf-8 -*-
from unittest import TestCase
try:
import json
except ImportError:
import simplejson as json
import math
import nose
import platform
import sys
import time
import datetime
import calendar
import re
import decimal
from functools import partial
from pandas.compat import range, zip, Strin... | mit |
MS047/XtraDataManager | XtraDataManager/FeaturesExploitation.py | 1 | 48305 | # -*- coding utf-8 -*-
from __future__ import print_function
# This script allows to use a scikit-learn.org classifier (supervised or unsupervised),
# in order to sort kilosort/phy generated units according to their cell type
# using their features, extracted thanks to the DataManager class written in FeaturesExtractio... | gpl-3.0 |
GuessWhoSamFoo/pandas | pandas/tests/indexes/datetimes/test_timezones.py | 1 | 46581 | # -*- coding: utf-8 -*-
"""
Tests for DatetimeIndex timezone-related methods
"""
from datetime import date, datetime, time, timedelta, tzinfo
from distutils.version import LooseVersion
import dateutil
from dateutil.tz import gettz, tzlocal
import numpy as np
import pytest
import pytz
from pandas._libs.tslibs import c... | bsd-3-clause |
avistous/QSTK | qstkutil/DataEvolved.py | 1 | 34666 | '''
(c) 2011, 2012 Georgia Tech Research Corporation
This source code is released under the New BSD license. Please see
http://wiki.quantsoftware.org/index.php?title=QSTK_License
for license details.
Created on May 14, 2012
@author: Jeffrey Portman
@contact: chromox@gmail.com
@summary: <summary>
'''
import os
impor... | bsd-3-clause |
kalleknast/GU_scan | GU_analyze.py | 1 | 68850 | # import the Stimfit input/output module:
import stfio
import numpy as np
import matplotlib.pyplot as plt
# For patches/fields in figures
from matplotlib.patches import Rectangle, Circle
from mpl_toolkits.axes_grid1.inset_locator import inset_axes
# For saving the list of dicts produced by plt_cGlu_pos
from pickle impo... | mit |
evanbiederstedt/RRBSfun | epiphen/cll_tests/total_cells.py | 1 | 32920 | import glob
import pandas as pd
import numpy as np
pd.set_option('display.max_columns', 50) # print all rows
import os
os.chdir("/gpfs/commons/home/biederstedte-934/evan_projects/correct_phylo_files")
normalB = glob.glob("binary_position_RRBS_normal_B_cell*")
mcell = glob.glob("binary_position_RRBS_NormalBCD19pCD27... | mit |
igoumiri/pyMST | adhoc/functions.py | 1 | 82864 | # import functions (produces .pyc file)
def b10tobx(x,b):
# x is an integer in base 10
# b is the base for the desired result
"""Given (DECIMAL_INTEGER,BASE),
this returns array of base multiples.
It may lead to unexpected results for BASE greater than 10.
"""
import scipy as sp
if x==0: d=1
... | mit |
uomsystemsbiology/LMMEL-miR-miner | create_TCGA_plots.py | 1 | 42582 | import os
import csv
import numpy as np
import matplotlib.pyplot as plt
__author__ = 'jcursons'
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
# This script is used to analyse melanoma (SKCM) data from The Cancer Genome Atlas (TCGA) project, in p... | mit |
ProfHoekstra/bluesky | bluesky/traffic/metric.py | 1 | 52178 | from time import time, gmtime, strftime
import numpy as np
import matplotlib.pyplot as plt
from math import degrees
import collections
from collections import defaultdict
import itertools as IT
import bluesky as bs
from bluesky.tools import geo
from bluesky.tools.misc import tim2txt
from bluesky.tools.aero import *
fr... | gpl-3.0 |
lucarebuffi/OASYS1 | oasys/widgets/error_profile/ow_abstract_height_profile_simulator.py | 1 | 41559 | import os, sys
import numpy
from PyQt5.QtCore import QRect, Qt
from PyQt5.QtWidgets import QApplication, QMessageBox, QLabel, QSizePolicy
from PyQt5.QtGui import QTextCursor, QFont, QPalette, QColor, QPixmap
from srxraylib.metrology import profiles_simulation
from matplotlib import cm
from matplotlib.backends.backend... | gpl-3.0 |
grlee77/numpy | numpy/core/numeric.py | 1 | 76347 | import functools
import itertools
import operator
import sys
import warnings
import numbers
import numpy as np
from . import multiarray
from .multiarray import (
_fastCopyAndTranspose as fastCopyAndTranspose, ALLOW_THREADS,
BUFSIZE, CLIP, MAXDIMS, MAY_SHARE_BOUNDS, MAY_SHARE_EXACT, RAISE,
WRAP, arange, arr... | bsd-3-clause |
blond-admin/BLonD | blond/beam/distributions_multibunch.py | 1 | 39051 | '''
**Module to generate multibunch distributions**
:Authors: **Danilo Quartullo**, **Alexandre Lasheen**, **Theodoros Argyropoulos**
'''
from __future__ import division, print_function, absolute_import
from builtins import range
import numpy as np
import copy
import matplotlib.pyplot as plt
from scipy.integrate impo... | gpl-3.0 |
pratapvardhan/pandas | pandas/core/series.py | 1 | 135882 | """
Data structure for 1-dimensional cross-sectional and time series data
"""
from __future__ import division
# pylint: disable=E1101,E1103
# pylint: disable=W0703,W0622,W0613,W0201
import types
import warnings
from textwrap import dedent
import numpy as np
import numpy.ma as ma
from pandas.core.accessor import Cac... | bsd-3-clause |
boada/planckClusters | MOSAICpipe/legacy/CLUSTERpipe/find_position_SOI.py | 1 | 50780 | #!/usr/bin/env python
from __future__ import division
from __future__ import print_function
from builtins import zip
from builtins import map
from builtins import range
from builtins import object
from past.utils import old_div
import os
import sys
import glob
import math
from pyfits import getheader, getval
#import a... | mit |
USCLiquidPropulsionLaboratory/Engine-sizing-snake | LOX_IPA.py | 1 | 35102 | ## LOX-IPA sim
#@ Author Juha Nieminen
#import sys
#sys.path.insert(0, '/Users/juhanieminen/Documents/adamrocket')
import RocketComponents as rc
from physical_constants import poise, inches, Runiv, gallons, lbm, \
gearth, atm, psi, lbf
from numpy import pi, linspace, cos, radians, sqrt, exp, log, array
from scipy... | mit |
toobaz/pandas | pandas/core/generic.py | 1 | 381557 | import collections
from datetime import timedelta
import functools
import gc
import json
import operator
import pickle
from textwrap import dedent
from typing import Callable, Dict, FrozenSet, List, Optional, Set
import warnings
import weakref
import numpy as np
from pandas._config import config
from pandas._libs im... | bsd-3-clause |
pratapvardhan/pandas | pandas/core/strings.py | 1 | 92110 | import numpy as np
from pandas.compat import zip
from pandas.core.dtypes.generic import ABCSeries, ABCIndex
from pandas.core.dtypes.missing import isna, notna
from pandas.core.dtypes.common import (
is_bool_dtype,
is_categorical_dtype,
is_object_dtype,
is_string_like,
is_list_like,
is_scalar,
... | bsd-3-clause |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/histogram2dcontour/_colorbar.py | 1 | 73625 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "histogram2dcontour"
_path_str = "histogram2dcontour.colorbar"
_valid_props = {
"bg... | mit |
jseabold/statsmodels | statsmodels/stats/tests/test_proportion.py | 4 | 39422 | # -*- coding: utf-8 -*-
"""
Created on Fri Mar 01 14:56:56 2013
Author: Josef Perktold
"""
import warnings
import pytest
import numpy as np
import pandas as pd
from numpy.testing import (assert_almost_equal, assert_equal,
assert_array_less, assert_raises, assert_allclose)
from statsmodels... | bsd-3-clause |
zfrenchee/pandas | pandas/tests/reshape/test_concat.py | 1 | 84574 | from warnings import catch_warnings
import dateutil
import numpy as np
from numpy.random import randn
from datetime import datetime
from pandas.compat import StringIO, iteritems, PY2
import pandas as pd
from pandas import (DataFrame, concat,
read_csv, isna, Series, date_range,
... | bsd-3-clause |
CroatianMeteorNetwork/CMN-codes | triangulation/FF_bin_suite.py | 1 | 49348 | # coding=utf-8
# Copyright 2014 Denis Vida, denis.vida@gmail.com
# The FF_bin_suite is free software; you can redistribute
# it and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, version 2.
# The FF_bin_suite is distributed in the hope that it will be
# ... | gpl-2.0 |
jniediek/mne-python | mne/time_frequency/tfr.py | 3 | 70609 | """A module which implements the time-frequency estimation.
Morlet code inspired by Matlab code from Sheraz Khan & Brainstorm & SPM
"""
# Authors : Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Hari Bharadwaj <hari@nmr.mgh.harvard.edu>
# Clement Moutard <clement.moutard@polytechniq... | bsd-3-clause |
dfm/kplr | kplr/api.py | 1 | 34372 | # -*- coding: utf-8 -*-
from __future__ import (division, print_function, absolute_import,
unicode_literals)
__all__ = ["API", "KOI", "Planet", "Star", "LightCurve", "TargetPixelFile"]
import os
import re
import json
import shutil
import logging
from itertools import product
from functools im... | mit |
phageghost/pg_tools | pgtools/myplots.py | 1 | 65648 | import os
import matplotlib
#matplotlib.use('Agg')
import seaborn
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
import plotly.plotly as py
import plotly.graph_objs as go
import numpy
import scipy
import scipy.stats
import pandas
import itertools
import sklearn.manifold
import sklearn.decomposi... | mit |
xiezhen/brilws | brilws/api.py | 1 | 68398 | import numpy as np
import pandas as pd
from sqlalchemy import exc,schema,types,Table,MetaData,Column
from datetime import datetime
import decimal
import os
import random
import time
#import yaml
import re
import contextlib
import sys
import ast
import logging
import string
import collections
import itertools
from brilw... | mit |
easytaxibr/airflow | airflow/contrib/hooks/bigquery_hook.py | 1 | 39002 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
ebilionis/py-best | best/gp/_multioutput_gaussian_process.py | 1 | 50867 | """Define the Multioutput Gaussian Process model.
Author:
Ilias Bilionis
Date:
11/20/2012
1/29/2013 (Made it conform to MarkovChainMonteCarlo class so that it can
be used in conjuction with uq.random.SequentialMonteCarlo.)
1/31/2013 (Added sample_prediction.)
1/2/2013 (Adde... | lgpl-3.0 |
eclee25/flu-SDI-exploratory-age | scripts/exploratory_Fall2012/DrawCharts.py | 1 | 45590 | #!/usr/bin/python
##############################################
###Python template
###Author: Elizabeth Lee
###Date: 10/10/12
###Function: Draw exploratory charts for SDI data
###Import data: A1, A2, A3, B3, C1, C2, C3
###Command Line: ipython DrawCharts.py
##############################################
### notes #... | mit |
CompPhysics/MachineLearning | doc/LectureNotes/_build/jupyter_execute/chapter5.py | 1 | 38036 | # Support Vector Machines, overarching aims
A Support Vector Machine (SVM) is a very powerful and versatile
Machine Learning method, capable of performing linear or nonlinear
classification, regression, and even outlier detection. It is one of
the most popular models in Machine Learning, and anyone interested in
Machi... | cc0-1.0 |
PuzzleboxIO/jigsaw-python | Puzzlebox/Jigsaw/Interface_Plot.py | 1 | 35556 | # -*- coding: utf-8 -*-
# Copyright Puzzlebox Productions, LLC (2010-2012)
#
# This code is released under the GNU Pulic License (GPL) version 2
# For more information please refer to http://www.gnu.org/copyleft/gpl.html
__changelog__ = """\
Last Update: 2013.07.25
"""
import os, sys
import Puzzlebox.Jigsaw.Configu... | agpl-3.0 |
yjzhang/uncurl_python | uncurl/experiment_runner.py | 1 | 38675 | # general framework for running purity experiments on 10x dataset
# two steps: dimensionality reduction/preprocessing, and clustering
# preprocessing -> dim_red -> clustering?
# ex. uncurl_mw -> tsne -> km???
# preprocessing returns a matrix of shape (k, cells), where k <= genes
from __future__ import print_function
... | mit |
workflo/dxf2gcode | python_examples/NURBS_fitting_by_Biarc_curves.py | 1 | 69179 | #!/usr/bin/python
# -*- coding: cp1252 -*-
#
#NURBS_fittin_by_Biarc_curves
#Programmer: Christian Kohlöffel
#E-mail: n/A
#
#Copyright 2008 Christian Kohlöffel
#
#Distributed under the terms of the GPL (GNU Public License)
#
#dxf2gcode is free software; you can redistribute it and/or modify
#it under the terms of th... | gpl-3.0 |
gkunter/coquery | coquery/gui/app.py | 1 | 127835 | # -*- coding: utf-8 -*-
"""
app.py is part of Coquery.
Copyright (c) 2016-2018 Gero Kunter (gero.kunter@coquery.org)
Coquery is released under the terms of the GNU General Public License (v3).
For details, see the file LICENSE that you should have received along
with Coquery. If not, see <http://www.gnu.org/licenses/... | gpl-3.0 |
zrisher/webapp-public | webapp/apps/taxbrain/helpers.py | 1 | 34981 | from collections import namedtuple
import numbers
import os
import pandas as pd
import dropq
import sys
import time
#Mock some module for imports because we can't fit them on Heroku slugs
from mock import Mock
import sys
MOCK_MODULES = ['numba', 'numba.jit', 'numba.vectorize', 'numba.guvectorize',
'mat... | mit |
sinagolara/VRP | VRP-03 - .py | 1 | 30150 | # -*- coding: utf-8 -*-
"""
This program offers a heuristic solution to the Vehicle Routng Problem problem. The algorithm is based on two steps.
The first step uses an improved adaptive Simulated Annealing meta-heuristic to minimize the number of routes.
The basic SA is modified to adaptively adjust its search spa... | mit |
DailyActie/Surrogate-Model | 01-codes/numpy-master/numpy/linalg/linalg.py | 1 | 77909 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | mit |
wolfier/incubator-airflow | airflow/www/views.py | 1 | 103652 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
fermiPy/fermipy | fermipy/plotting.py | 1 | 57802 | # Licensed under a 3-clause BSD style license - see LICENSE.rst
from __future__ import absolute_import, division, print_function
import copy
import os
import matplotlib
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
import matplotlib.patheffects as PathEffects
from matplotlib.patches import Circ... | bsd-3-clause |
wronk/mne-python | mne/viz/topomap.py | 1 | 80040 | """Functions to plot M/EEG data e.g. topographies
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com... | bsd-3-clause |
felixfan/PyHLA | PyHLA.py | 1 | 112728 | #!/usr/bin/env python
#coding=utf-8
from __future__ import division
import statsmodels.formula.api as smf
from collections import Counter
import numpy as np
import pandas as pd
import scipy.stats
import argparse
import time
import sys
import random
import math
import os
import string
###################### HLAcount ##... | gpl-2.0 |
albertoferna/compmech | compmech/panels/kpanels/kpanelcheb/kpanelcheb.py | 1 | 52667 | from __future__ import division
import gc
import os
import sys
import traceback
from collections import Iterable
import time
import cPickle
import __main__
import numpy as np
from scipy.sparse import csr_matrix
from scipy.sparse.linalg import eigsh
from scipy.optimize import leastsq
from numpy import linspace, cos, si... | bsd-3-clause |
uglyboxer/linear_neuron | net-p3/lib/python3.5/site-packages/sklearn/tests/test_cross_validation.py | 1 | 45109 | """Test the cross_validation module"""
from __future__ import division
import warnings
import numpy as np
from scipy.sparse import coo_matrix
from scipy import stats
from sklearn.utils.testing import assert_true
from sklearn.utils.testing import assert_false
from sklearn.utils.testing import assert_equal
from sklearn... | mit |
RAPD/RAPD | src/plugins/merge/plugin.py | 1 | 64460 | """Hierarchical clustering and merging of data for RAPD plugin"""
"""
This file is part of RAPD
Copyright (C) 2017, Cornell University
All rights reserved.
RAPD is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Founda... | agpl-3.0 |
blaze/dask | dask/dataframe/tests/test_shuffle.py | 1 | 36132 | import itertools
import os
import random
import tempfile
from unittest import mock
import pandas as pd
import pytest
import pickle
import numpy as np
import string
import multiprocessing as mp
from copy import copy
import dask
import dask.dataframe as dd
from dask.dataframe._compat import tm, assert_categorical_equal... | bsd-3-clause |
dricciardelli/vae2vec | capt_gen_aux_oh.py | 1 | 38983 | # -*- coding: utf-8 -*-
import math
import os
import tensorflow as tf
import numpy as np
import pandas as pd
import pickle
import pickle as pkl
import cv2
import skimage
import random
import tensorflow.python.platform
from tensorflow.python.ops import rnn
from keras.preprocessing import sequence
from collections import... | mit |
jwi078/incubator-airflow | airflow/www/views.py | 1 | 83984 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
tschaume/pymatgen | pymatgen/analysis/chemenv/coordination_environments/structure_environments.py | 1 | 88719 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module contains objects that are used to describe the environments in a structure. The most detailed object
(StructureEnvironments) contains a very thorough analysis of the environments of a given ato... | mit |
Fokko/incubator-airflow | tests/gcp/hooks/test_bigquery.py | 1 | 52970 | # -*- coding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
#... | apache-2.0 |
dsm054/pandas | pandas/core/indexes/category.py | 1 | 31037 | import operator
import warnings
import numpy as np
from pandas._libs import index as libindex
from pandas import compat
from pandas.compat.numpy import function as nv
from pandas.core.dtypes.generic import ABCCategorical, ABCSeries
from pandas.core.dtypes.dtypes import CategoricalDtype
from pandas.core.dtypes.common ... | bsd-3-clause |
dsm054/pandas | pandas/tests/frame/test_missing.py | 1 | 31857 | # -*- coding: utf-8 -*-
from __future__ import print_function
import pytest
from distutils.version import LooseVersion
from numpy import nan, random
import numpy as np
import datetime
import dateutil
from pandas.compat import lrange
from pandas import (DataFrame, Series, Timestamp,
date_range, ... | bsd-3-clause |
jaeilepp/mne-python | mne/inverse_sparse/mxne_optim.py | 1 | 40259 | from __future__ import print_function
# Author: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Daniel Strohmeier <daniel.strohmeier@gmail.com>
#
# License: Simplified BSD
from math import sqrt, ceil
import numpy as np
from scipy import linalg
from .mxne_debiasing import compute_bias
from ..ut... | bsd-3-clause |
guangtunbenzhu/BGT-Cosmology | Examples/LRG-MgII/Sigma_MonteCarlo.py | 1 | 52418 | """
Sigma_MonteCarlo
"""
import numpy as np
from scipy import interpolate
import halomodel as hm
import matplotlib.pyplot as plt
from matplotlib import rc, rcParams
rc('text', usetex=True)
rcParams['text.latex.preamble']=[r"\usepackage{amsmath}"]
CosPar={'Omega_M':0.3, 'Omega_L':0.7, 'Omega_b':0.045, 'Omega_nu':1e-5,... | mit |
tyb0807/angr | angr/knowledge_plugins/functions/function.py | 1 | 42667 |
import os
import logging
import networkx
import string
import itertools
from collections import defaultdict
import claripy
from ...errors import SimEngineError, SimMemoryError
from ...procedures import SIM_LIBRARIES
l = logging.getLogger("angr.knowledge.function")
class Function(object):
"""
A representati... | bsd-2-clause |
jhpeterson/DXFtoMesh | DXFtoSegments.py | 1 | 42441 | #!/usr/bin/env python
'''
Code Written by Jeff Peterson (2016)
The DXFGeometry object in this file is the primary class. It can be used to read
a DXF file and then convert the information into a form that can then be used
in the construction of a computational mesh. This module should be imported into
another script a... | mit |
SiLab-Bonn/testbeam_analysis | testbeam_analysis/gui/gui_widgets/analysis_widgets.py | 1 | 42912 | """
Implements generic analysis widgets to apply analysis functions on test beam data. Two separate
widgets to apply one analysis function in parallel to all input data and to apply multiple analysis functions
to multiple input data
"""
import os
import inspect
import logging
import math
from subprocess import call
f... | mit |
jaeilepp/mne-python | mne/dipole.py | 1 | 46536 | """Single-dipole functions and classes."""
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Eric Larson <larson.eric.d@gmail.com>
#
# License: Simplified BSD
from copy import deepcopy
from functools import partial
import re
import numpy as np
from scipy import linalg
from .cov impo... | bsd-3-clause |
sknepneklab/SAMoS | utils/pvmodel/cellmesh.py | 1 | 78048 |
from openmesh import *
import writemesh as wr
import ioutils as io
from ioutils import omvec, OrderedSet
import numpy as np
from numpy.linalg import norm, eig
import scipy.integrate as integrate
import matplotlib.pyplot as plt
from collections import OrderedDict
from scipy.spatial import Delaunay
from tmp_read_data... | gpl-3.0 |
woel0007/caravel | caravel/models.py | 1 | 54161 | """A collection of ORM sqlalchemy models for Caravel"""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
import functools
import json
import logging
import textwrap
from collections import namedtuple
from copy import de... | apache-2.0 |
guaix-ucm/pyemir | emirdrp/tools/fit_boundaries.py | 2 | 62586 | #
# Copyright 2008-2020 Universidad Complutense de Madrid
#
# This file is part of PyEmir
#
# PyEmir is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | gpl-3.0 |
3kakakhel/pygw2sim | pygw2sim.py | 1 | 71036 | """
This module contains classes and data for gw2 simulation in general.
:Author: purpleflame (ak.purpleflame@gmail.com)
:License: GNU General Public License Version 3
Current Version To Do List
================================================================================
0. Add boon and condition objects, fig... | gpl-3.0 |
matthewpklein/battsimpy | tests/full_1d_fvm_ida_broken.py | 1 | 91385 | import numpy
import scipy.linalg
import scipy.optimize
from copy import deepcopy
from matplotlib import pyplot as plt
plt.style.use('classic')
from assimulo.solvers import IDA
from assimulo.problem import Implicit_Problem
from scipy.signal import wiener, filtfilt, butter, gaussian
from scipy.ndimage import filter... | gpl-3.0 |
iwelland/hop | hop/siteanalysis.py | 1 | 58880 | # $Id$
# Hop --- a framework to analyze solvation dynamics from MD simulations
# Copyright (c) 2009 Oliver Beckstein <orbeckst@gmail.com>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either... | lgpl-3.0 |
dssg/wikienergy | disaggregator/build/pandas/pandas/tseries/tests/test_base.py | 1 | 45324 | from __future__ import print_function
import re
from datetime import datetime, timedelta
import numpy as np
import pandas as pd
from pandas.tseries.base import DatetimeIndexOpsMixin
from pandas.util.testing import assertRaisesRegexp, assert_isinstance
from pandas.tseries.common import is_datetimelike
from pandas import... | mit |
eubr-bigsea/tahiti | migrations/versions/50e0ae9aa406f_refactoring_sklearn.py | 1 | 32968 | # coding=utf-8
"""refactoring_sklearn
Revision ID: 50e0ae9aa406f
Revises: fef08022f308
Create Date: 2019-01-23 14:55:47.471104
"""
import itertools
from alembic import context
from alembic import op
from sqlalchemy import Integer, String
from sqlalchemy.orm import sessionmaker
from sqlalchemy.sql import table, column
... | apache-2.0 |
KgBC/just-dice-bot | just-dice-bot.py | 1 | 40778 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Simple martingale bot for just-dice.com
Copyright (c) 2013 KgBC <IFGIWg@tormail.org>
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version ... | gpl-2.0 |
metabolite-atlas/metatlas | metatlas/helpers/mzmine_helpers.py | 1 | 49339 | from __future__ import print_function
import numpy as np
import sys
import json
import pandas as pd
import re
import glob as glob
import os
from collections import defaultdict
from xml.etree import cElementTree as ET
import multiprocessing as mp
import matplotlib.pyplot as plt
import metatlas.metatlas_objects as meto... | bsd-3-clause |
mcgratta/macfp-db | Utilities/macfp.py | 1 | 30373 | #!/usr/bin/env python3
"""
macfp.py
by Randy McDermott
Feb 2020
Measurement and Computation of Fire Phenomena (MaCFP)
Collection of functions for plotting and analysis
"""
import sys
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
def plot_to_fig(x_data,y_data,**kwargs):
"""
Create a ... | mit |
MJuddBooth/pandas | pandas/tests/arithmetic/test_datetime64.py | 1 | 95490 | # -*- coding: utf-8 -*-
# Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for datetime64 and datetime64tz dtypes
from datetime import datetime, timedelta
from itertools import product, starmap
import operator
import warnings
import numpy as np
import pytest
im... | bsd-3-clause |
linebp/pandas | pandas/tests/tseries/test_timezones.py | 1 | 67637 | # pylint: disable-msg=E1101,W0612
import pytest
import pytz
import dateutil
import numpy as np
from dateutil.parser import parse
from pytz import NonExistentTimeError
from distutils.version import LooseVersion
from dateutil.tz import tzlocal, tzoffset
from datetime import datetime, timedelta, tzinfo, date
import pan... | bsd-3-clause |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/contour.py | 1 | 66454 | """
These are classes to support contour plotting and
labelling for the axes class
"""
import warnings
import matplotlib as mpl
import numpy as np
from numpy import ma
import matplotlib._cntr as _cntr
import matplotlib.path as mpath
import matplotlib.ticker as ticker
import matplotlib.cm as cm
import matplotlib.color... | gpl-3.0 |
stechma2/samuraiAnalysis | samPlt.py | 1 | 57977 | """
samPlt
======
Common plotting routines for SAMURAI data.
initMapPlot
plotContour
plotVec
plotXS
xsKDtree
xsCrdCald
multXSCrdCalc
"""
import pyart
import cmocean
import warnings
import matplotlib as mpl
# mpl.use('PDF')
from matplotlib import pyplot as plt
import numpy as np
import num... | gpl-3.0 |
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