repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
dkillick/iris | lib/iris/tests/__init__.py | 1 | 47007 | # (C) British Crown Copyright 2010 - 2018, Met Office
#
# This file is part of Iris.
#
# Iris is free software: you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the
# Free Software Foundation, either version 3 of the License, or
# (at your option) any l... | lgpl-3.0 |
yl565/statsmodels | statsmodels/genmod/generalized_estimating_equations.py | 1 | 98358 | """
Procedures for fitting marginal regression models to dependent data
using Generalized Estimating Equations.
References
----------
KY Liang and S Zeger. "Longitudinal data analysis using
generalized linear models". Biometrika (1986) 73 (1): 13-22.
S Zeger and KY Liang. "Longitudinal Data Analysis for Discrete and
... | bsd-3-clause |
tcporco/SageBoxModels | boxmodel/product.py | 1 | 49482 | #*****************************************************************************
# Copyright (C) 2017 Lee Worden <worden dot lee at gmail dot com>
#
# Distributed under the terms of the GNU General Public License (GPL) v.2
# http://www.gnu.org/licenses/
#************************************************... | gpl-2.0 |
ASethi77/StateOfTheMedia | src/model/overall_runner.py | 1 | 34132 | # adding this to suppress sklearn DeprecationWarnings...
def warn(*args, **kwargs):
pass
import warnings
warnings.warn = warn
import numpy as np
import os
import time
import pickle
import datetime
from datetime import timedelta
from optparse import OptionParser
from sklearn.model_selection import cross_val_score, ... | apache-2.0 |
mistercrunch/panoramix | tests/core_tests.py | 1 | 59111 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
orley-enterprises/ev_chargingcoordination2017 | src/run.py | 1 | 62812 | ''' The modules docstring...'''
# *****************************************************************************************************
# * Imports
# *****************************************************************************************************
import configparser
from copy import deepcopy
import copy
... | gpl-3.0 |
bnaul/scikit-learn | sklearn/decomposition/_dict_learning.py | 1 | 58810 | """ Dictionary learning
"""
# Author: Vlad Niculae, Gael Varoquaux, Alexandre Gramfort
# License: BSD 3 clause
import time
import sys
import itertools
from math import ceil
import numpy as np
from scipy import linalg
from joblib import Parallel, delayed, effective_n_jobs
from ..base import BaseEstimator, Transforme... | bsd-3-clause |
pylayers/pylayers | pylayers/network/network.py | 1 | 63263 | # -*- coding:Utf-8 -*-
"""
.. currentmodule:: pylayers.network.network
Node Class
==========
.. autoclass:: Node
:members:
Network Class
==============
.. autoclass: Network
:members:
PNetwork Class
==============
SimPy Process compliant version of the Network class
.. autoclass:: PNetwork
:members... | mit |
cms-ttbarAC/CyMiniAna | python/hepPlotter/hepPlotter.py | 1 | 35198 | """
Created: 6 April 2016
Last Updated: 9 March 2018
Dan Marley
daniel.edison.marley@cernSPAMNOT.ch
Texas A&M University
Bennett Magy
bmagy@umichSPAMNOT.edu
University of Michigan, Ann Arbor, MI 48109
-----
Class to make a simple instance each time we want some basic plots!
This does not include ... | mit |
pcrumley/Iseult | src/moments.py | 1 | 48137 |
#!/usr/bin/env python
import tkinter as Tk
from tkinter import ttk
import matplotlib
import numpy as np
import numpy.ma as ma
import new_cmaps
import matplotlib.colors as mcolors
import matplotlib.gridspec as gridspec
import matplotlib.patheffects as PathEffects
import matplotlib.transforms as mtransforms
from NumbaMo... | gpl-3.0 |
miguelalba89/ISStudio | isstudio.py | 1 | 33162 | """
Data set and instance selection algorithms.
Author: Miguel de Alba Aparicio.
"""
"""
The MIT License (MIT)
Copyright (c) 2014 Miguel de Alba Aparicio
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the ... | mit |
VasLem/KinectPainting | experiment.py | 1 | 36363 | #encoding=utf-8
from classifiers import *
from CDBIMM import *
from mixed_classifier import CombinedGesturesClassifier
from itertools import product
import logging
import ast
import pandas as pd
LOG = logging.getLogger('__name__')
def perform_single_experiment(dict_param, filt=None, metric='Accuracy',
... | bsd-3-clause |
gfyoung/pandas | pandas/core/reshape/reshape.py | 1 | 35043 | from __future__ import annotations
import itertools
from typing import List, Optional, Union
import numpy as np
import pandas._libs.algos as libalgos
import pandas._libs.reshape as libreshape
from pandas._libs.sparse import IntIndex
from pandas._typing import Dtype
from pandas.util._decorators import cache_readonly
... | bsd-3-clause |
ryfeus/lambda-packs | Tensorflow_Pandas_Numpy/source3.6/pandas/core/indexes/interval.py | 1 | 55811 | """ define the IntervalIndex """
import numpy as np
import warnings
from pandas.core.dtypes.missing import notna, isna
from pandas.core.dtypes.generic import ABCDatetimeIndex, ABCPeriodIndex
from pandas.core.dtypes.dtypes import IntervalDtype
from pandas.core.dtypes.cast import (
maybe_convert_platform, find_comm... | mit |
GuessWhoSamFoo/pandas | pandas/tests/scalar/timestamp/test_timestamp.py | 1 | 38289 | """ test the scalar Timestamp """
import calendar
from datetime import datetime, timedelta
import locale
import unicodedata
import dateutil
from dateutil.tz import tzutc
import numpy as np
import pytest
import pytz
from pytz import timezone, utc
from pandas._libs.tslibs import conversion
from pandas._libs.tslibs.tim... | bsd-3-clause |
kdaily/altanalyze | AltAnalyzeViewer.py | 1 | 275708 | from numpy import arange, sin, pi
import os.path, sys, shutil
import wx.lib.scrolledpanel
import wx.grid as gridlib
import os
import string, re
import wx
import subprocess
import matplotlib
import numpy as np
import matplotlib.pyplot as plt
#matplotlib.use('WXAgg')
from matplotlib.backends.backend_wx import NavigationT... | apache-2.0 |
cjhopp/obspyck | obspyck/util.py | 2 | 52634 | # -*- coding: utf-8 -*-
# -------------------------------------------------------------------
# Filename: util.py
# Purpose: Helper functions for ObsPyck
# Author: Tobias Megies, Lion Krischer
# Email: megies@geophysik.uni-muenchen.de
# License: GPLv2
#
# Copyright (C) 2010 Tobias Megies, Lion Krischer
# -------... | gpl-2.0 |
rgerkin/upsit | scratch.py | 1 | 33324 | import inspect
import builtins
import re
import time
import nbformat
from IPython.display import Image,display,HTML
import numpy as np
from scipy.special import beta as betaf
from scipy.stats import norm,beta
from scipy.optimize import minimize
import seaborn as sns
import pandas as pd
from sklearn.naive_bayes impo... | gpl-2.0 |
aclapes/darwintree | classification.py | 1 | 43230 | __author__ = 'aclapes'
import numpy as np
import sys
from sklearn import svm
from sklearn.metrics import average_precision_score, label_ranking_average_precision_score, make_scorer
import utils
from copy import deepcopy
from sklearn import preprocessing, cross_validation, grid_search
from sklearn.ensemble import Rando... | bsd-3-clause |
andrewhanlon/QCD_scripts | sigmond/task_handler.py | 1 | 147096 | import os
import stat
import logging
import sys
import subprocess
import abc
import itertools
import copy
import shutil
import glob
from collections import OrderedDict
from sortedcontainers import SortedSet
from pylatex import Document, Section, Subsection, Subsubsection, Figure, SubFigure, NoEscape, \
Package, Lo... | gpl-3.0 |
depet/scikit-learn | sklearn/linear_model/coordinate_descent.py | 1 | 54416 | # Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Fabian Pedregosa <fabian.pedregosa@inria.fr>
# Olivier Grisel <olivier.grisel@ensta.org>
# Gael Varoquaux <gael.varoquaux@inria.fr>
#
# License: BSD 3 clause
import sys
import warnings
import itertools
import operator
from abc import ... | bsd-3-clause |
bgris/ODL_bgris | lib/python3.5/site-packages/spyder/widgets/variableexplorer/dataframeeditor.py | 1 | 32617 | # -*- coding: utf-8 -*-
#
# Copyright © Spyder Project Contributors
# Licensed under the terms of the New BSD License
#
# DataFrameModel is based on the class ArrayModel from array editor
# and the class DataFrameModel from the pandas project.
# Present in pandas.sandbox.qtpandas in v0.13.1
# Copyright (c) 2011... | gpl-3.0 |
rfinn/LCS | python/lcs_paper2.py | 1 | 136635 | #!/usr/bin/env python
###########################
###### IMPORT MODULES
###########################
import LCSbase as lb
import LCScommon as lcscommon
from matplotlib import pyplot as plt
import numpy as np
import os
import scipy.stats as st
from scipy.stats import ks_2samp, anderson_ksamp, binned_statistic
import a... | gpl-3.0 |
quantopian/zipline | tests/test_algorithm.py | 1 | 153030 | #
# Copyright 2018 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
espenhgn/LFPy | LFPy/recextelectrode.py | 1 | 36246 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Copyright (C) 2012 Computational Neuroscience Group, NMBU.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at you... | gpl-3.0 |
OzFlux/OzFluxQC | scripts/qcgf.py | 1 | 190371 | import ast
from calendar import isleap
from configobj import ConfigObj
import constants as c
import csv
import datetime
import dateutil
import logging
import numpy
import matplotlib as mpl
import matplotlib.dates as mdt
import matplotlib.pyplot as plt
import os
import platform
import pylab
import qcck
import qcio
impor... | gpl-3.0 |
terrencepreilly/darglint | tests/test_integrity_checker.py | 1 | 53520 | import ast
from unittest import (
TestCase,
skip,
)
from darglint.strictness import Strictness
from darglint.docstring.style import DocstringStyle
from darglint.integrity_checker import (
IntegrityChecker,
)
from darglint.function_description import (
get_function_descriptions,
)
from darglint.errors i... | mit |
tritemio/FRETBursts | fretbursts/burst_plot.py | 1 | 96452 | # encoding: utf-8
#
# FRETBursts - A single-molecule FRET burst analysis toolkit.
#
# Copyright (C) 2013-2016 The Regents of the University of California,
# Antonino Ingargiola <tritemio@gmail.com>
#
"""
This module defines all the plotting functions for the
:class:`fretbursts.burstlib.Data` object.
The ... | gpl-2.0 |
nervous-laughter/q2-demux | q2_demux/tests/test_demux.py | 1 | 35140 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2017, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ------------------------------------------------... | bsd-3-clause |
lbeltrame/bcbio-nextgen | bcbio/install.py | 2 | 37019 | """Handle installation and updates of bcbio-nextgen, third party software and data.
Enables automated installation tool and in-place updates to install additional
data and software.
"""
from __future__ import print_function
import argparse
import collections
import contextlib
import datetime
import dateutil
from distu... | mit |
choderalab/openpathsampling | openpathsampling/high_level/network.py | 1 | 39302 | import logging
import itertools
import pandas as pd
import openpathsampling as paths
from openpathsampling.netcdfplus import StorableNamedObject
# from functools import reduce # not built-in for py3
logger = logging.getLogger(__name__)
def _default_state_name(state):
return state.name if state.is_named else ... | lgpl-2.1 |
UCHIC/h2outility | src/GAMUTRawData/odmservices/series_service.py | 1 | 37416 | import logging
import threading
import pandas
from sqlalchemy import distinct, func
from GAMUTRawData.odmdata import DataValue, Method, ODMVersion, OffsetType, Qualifier, QualityControlLevel, Sample, \
Series, SessionFactory, Site, Unit, Variable
logger = logging.getLogger('main')
class TimeoutException(Except... | bsd-3-clause |
jtwhite79/pyemu | autotest/smoother_tests.py | 1 | 77834 | import os
if not os.path.exists("temp"):
os.mkdir("temp")
def henry_setup():
import os
import pyemu
pst = pyemu.Pst(os.path.join("smoother","henry_pc","pest.pst"))
par = pst.parameter_data
par.loc[:,"parlbnd"] = 20.0
par.loc[:,"parubnd"] = 2000.0
par.loc["mult1","parlbnd"] = 0.9
par... | bsd-3-clause |
bhzunami/Immo | immo/scikit/pipeline.py | 1 | 46523 | import os
import pdb
import logging
import json
import argparse
import datetime
import numpy as np
import seaborn as sns
import pandas as pd
import matplotlib.pyplot as plt
import ast
# Scikit
from sklearn.ensemble import ExtraTreesRegressor, IsolationForest
from sklearn.externals import joblib
from sklearn.metrics imp... | mit |
Patrick-Cole/pygmi | pygmi/pfmod/cubes.py | 1 | 69732 | # -----------------------------------------------------------------------------
# Name: cubes.py (part of PyGMI)
#
# Author: Patrick Cole
# E-Mail: pcole@geoscience.org.za
#
# Copyright: (c) 2013 Council for Geoscience
# Licence: GPL-3.0
#
# This file is part of PyGMI
#
# PyGMI is free software: ... | gpl-3.0 |
cython-testbed/pandas | pandas/tests/indexes/test_numeric.py | 1 | 40859 | # -*- coding: utf-8 -*-
import pytest
from datetime import datetime
from pandas.compat import range
import numpy as np
from pandas import (Series, Index, Float64Index,
Int64Index, UInt64Index)
import pandas.util.testing as tm
import pandas as pd
from pandas._libs.tslibs import Timestamp
from ... | bsd-3-clause |
pravsripad/mne-python | mne/viz/_3d.py | 2 | 135197 | # -*- coding: utf-8 -*-
"""Functions to make 3D plots with M/EEG data."""
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# Mainak Jas <maina... | bsd-3-clause |
spi-x-i/shee | shee/frames/aggregate.py | 1 | 30473 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import datetime
import numpy as np
import pandas as pd
import matplotlib.dates as mdates
import matplotlib.ticker as tick
import matplotlib.pyplot as plt
from frame import DStatException
from frame import DStatOpenCsvException
from frame import DStatReadColum... | gpl-3.0 |
linebp/pandas | pandas/tests/frame/test_analytics.py | 1 | 77827 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import timedelta
from distutils.version import LooseVersion
import sys
import pytest
from string import ascii_lowercase
from numpy import nan
from numpy.random import randn
import numpy as np
from pandas.compat import lrange, product
from p... | bsd-3-clause |
dkriegner/xrayutilities | lib/xrayutilities/io/spec.py | 1 | 46708 | # This file is part of xrayutilities.
#
# xrayutilities is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed... | gpl-2.0 |
udibr/seizure-prediction | seizure/transforms.py | 1 | 106479 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
import numpy as np
from scipy import signal
from scipy.signal import resample, hann
from sklearn import preprocessing
# optional modules for trying out different transforms
try:
import pywt
except ImportError, e:
pass
try:
from scikits.talkbox.features import... | mit |
xji3/IGCexpansion | IGCexpansion/CodonGeneconv.py | 1 | 69176 | # Uses Alex Griffing's JsonCTMCTree package for likelihood and gradient calculation
# Re-write of my previous CodonGeneconv class
# commit number: Oct 22nd, 2014 for old package
# cb1ba60ee2b57d6703cd9a3987000c2fd4dd68a5
# commit number: Dec 17th, 2014 for new package
# 33e393a973161e3a29149e82bfda23882b5826f3
... | gpl-3.0 |
stefsmeets/lines | lines/lines.py | 1 | 80793 | #!/usr/bin/env python2.7
# Lines - a python plotting program
# Copyright (C) 2015 Stef Smeets
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, o... | gpl-2.0 |
veeresht/CommPy | commpy/channelcoding/convcode.py | 1 | 34295 | # Authors: CommPy contributors
# License: BSD 3-Clause
""" Algorithms for Convolutional Codes """
from __future__ import division
import functools
import math
from warnings import warn
import matplotlib.colors as mcolors
import matplotlib.patches as mpatches
import matplotlib.path as mpath
import matplotlib.pyplot ... | bsd-3-clause |
Delosari/dazer | bin/lib/Astro_Libraries/Abundances_Class.py | 1 | 34828 | from scipy.stats import truncnorm
from uncertainties import ufloat, umath, unumpy, UFloat
from pyneb import RecAtom, Atom, atomicData, Diagnostics
from numpy import ndarray, zeros, mean, median, where, std, log10, power, random, exp, loadtxt, nan as np_nan, isnan, savetxt, transpose, copy, vstack,... | mit |
QISKit/qiskit-sdk-py | qiskit/circuit/quantumcircuit.py | 1 | 41464 | # -*- coding: utf-8 -*-
# This code is part of Qiskit.
#
# (C) Copyright IBM 2017.
#
# This code is licensed under the Apache License, Version 2.0. You may
# obtain a copy of this license in the LICENSE.txt file in the root directory
# of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
#
# Any modif... | apache-2.0 |
giorgiop/scikit-learn | sklearn/model_selection/_search.py | 2 | 48518 | """
The :mod:`sklearn.model_selection._search` includes utilities to fine-tune the
parameters of an estimator.
"""
from __future__ import print_function
from __future__ import division
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>
# Andreas... | bsd-3-clause |
iaklampanos/bde-pilot-2 | backend/api_methods.py | 1 | 39958 | """
CLASS INFO
---------------------------------------------------------------------------
This class acts as the model (from MVC framework) for the SC5 #3 pilot.
---------------------------------------------------------------------------
"""
from Dataset_transformations import Dataset_transformations
from... | apache-2.0 |
drogenlied/qudi | logic/pulsed_measurement_logic.py | 1 | 61802 | # -*- coding: utf-8 -*-
"""
This file contains the Qudi logic which controls all pulsed measurements.
Qudi is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any ... | gpl-3.0 |
kevin-intel/scikit-learn | sklearn/multioutput.py | 3 | 30113 | """
This module implements multioutput regression and classification.
The estimators provided in this module are meta-estimators: they require
a base estimator to be provided in their constructor. The meta-estimator
extends single output estimators to multioutput estimators.
"""
# Author: Tim Head <betatim@gmail.com>... | bsd-3-clause |
manahl/arctic | tests/unit/store/test_version_store.py | 1 | 32082 | import datetime
from datetime import datetime as dt, timedelta as dtd
import bson
import pymongo
import pytest
from bson import ObjectId
from mock import patch, MagicMock, sentinel, create_autospec, Mock, call
from pymongo import ReadPreference
from pymongo.collection import Collection
from pymongo.errors import Opera... | lgpl-2.1 |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_load2-new10fold_local_test (u-PC's conflicted copy 2015-04-15).py | 1 | 43559 |
# coding: utf-8
# In[5]:
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
peterbarker/MAVProxy | MAVProxy/mavproxy.py | 1 | 39958 | #!/usr/bin/env python
'''
mavproxy - a MAVLink proxy program
Copyright Andrew Tridgell 2011
Released under the GNU GPL version 3 or later
'''
import sys, os, time, socket, signal
import fnmatch, errno, threading
import serial, Queue, select
import traceback
import select
import shlex
from MAVProxy.modules.lib impor... | gpl-3.0 |
jesuscript/topo-mpi | contrib/JanA/LSCSMNEW.py | 1 | 54397 | from scipy.optimize import fmin_ncg, anneal, fmin_cg, fmin_bfgs, fmin_tnc, fmin_l_bfgs_b
import __main__
import numpy
import pylab
import sys
sys.path.append('/home/jan/Theano/')
import theano
theano.config.floatX='float32'
#theano.config.warn.sum_sum_bug=False
from theano import tensor as T
from theano import functio... | bsd-3-clause |
kevinnguyeneng/django-uwsgi-nginx | app/naf_autoticket/Modules/EventFilter.py | 1 | 32347 | # -*- coding: utf-8 -*-
__author__ = 'admin'
from naf_autoticket.models import AlertInfo, IssueLogDB, IncidentQueue
from exceptions import *
import json
import os
import time
import string
import pandas as pd
from django.core import serializers
from django.db.models import Q
from django.db import IntegrityEr... | gpl-3.0 |
dialounke/pylayers | pylayers/measures/mesmimo.py | 1 | 33895 | #!/usr/bin/python
#-*- coding:Utf-8 -*-
from __future__ import print_function
from pylayers.signal.bsignal import *
from pylayers.antprop.aarray import *
from pylayers.util.project import *
from pylayers.antprop.channel import *
from pylayers.gis.readvrml import *
import numpy as np
import matplotlib.pylab as plt
impor... | mit |
GlobalEcologyLab/SARDM | MpFileExtractorAndGeneratorHelper.py | 1 | 99594 | # Python modules
import pickle
import re
import string
from os import listdir, mkdir, path
from shutil import copyfile
from StringIO import StringIO
from time import time, localtime, strftime
# Python extension modules (requires extension installations)
import numpy as np
import pandas as pd
from patsy.bui... | gpl-3.0 |
NixaSoftware/CVis | venv/lib/python2.7/site-packages/pandas/tests/frame/test_reshape.py | 1 | 31676 | # -*- coding: utf-8 -*-
from __future__ import print_function
from warnings import catch_warnings
from datetime import datetime
import itertools
import pytest
from numpy.random import randn
from numpy import nan
import numpy as np
from pandas.compat import u
from pandas import (DataFrame, Index, Series, MultiIndex... | apache-2.0 |
wchan/tensorflow | speech4/models/speech.py | 1 | 55358 | #!/usr/bin/env python
import google
import itertools
import math
import matplotlib
matplotlib.use('Agg')
import matplotlib.gridspec as gridspec
import matplotlib.pyplot as plt
import numpy as np
import os.path
import random
import sys
import string
import time
import tensorflow as tf
from tensorflow.core.framework i... | apache-2.0 |
astraw/stdeb | stdeb/util.py | 1 | 65098 | #
# This module contains most of the code of stdeb.
#
import calendar
import os
import re
import select
import shutil
import sys
import time
import codecs
try:
# Python 2.x
import ConfigParser
except ImportError:
# Python 3.x
import configparser as ConfigParser
import subprocess
import tempfile
import s... | mit |
BiaDarkia/scikit-learn | sklearn/ensemble/weight_boosting.py | 3 | 41145 | """Weight Boosting
This module contains weight boosting estimators for both classification and
regression.
The module structure is the following:
- The ``BaseWeightBoosting`` base class implements a common ``fit`` method
for all the estimators in the module. Regression and classification
only differ from each ot... | bsd-3-clause |
aemerick/galaxy_analysis | analysis/PDF.py | 1 | 37448 | from galaxy_analysis.plot.plot_styles import *
rc('font', size=22)#, ftype=42)
import yt
import numpy as np
from copy import copy
import sys
import deepdish as dd
from scipy.optimize import brentq
from galaxy_analysis.utilities import utilities
import h5py
from galaxy_analysis.utilities import functions
import matplo... | mit |
mattdavie/UCLESreduction | RADIUS_V7b.py | 1 | 142088 | import numpy as np
from astropy.io import fits as pyfits
from scipy import ndimage
from scipy.ndimage.filters import maximum_filter1d as maxfilt
from scipy.io import readsav
import os
import scipy.interpolate as scin
from scipy.linalg import solve_banded
import scipy.ndimage.filters as filters
from scipy.linalg.fblas i... | cc0-1.0 |
armgilles/open-moulinette | insee/mk_data.py | 1 | 45705 | # -*- coding: utf-8 -*-
import pandas as pd
from comparison import compare_geo, fillna_with_other_table
print "Initialisation..."
############################################################
#### FUNCIONS
############################################################
def _check_data(data, file_nam... | mit |
ahaberlie/MetPy | tests/calc/test_calc_tools.py | 1 | 61073 | # Copyright (c) 2016,2017,2018,2019 MetPy Developers.
# Distributed under the terms of the BSD 3-Clause License.
# SPDX-License-Identifier: BSD-3-Clause
"""Test the `tools` module."""
from collections import namedtuple
import cartopy.crs as ccrs
import numpy as np
import numpy.ma as ma
import pandas as pd
import pyte... | bsd-3-clause |
Kadenze/siamese_net | siamese_net.py | 1 | 82995 | # -*- coding: utf-8 -*-
"""Siamese Network for performing training of a Deep Convolutional
Network for Face Verification on the Olivetti and LFW Faces datasets.
Dependencies:
python 3.4+, numpy>=1.10.4, sklearn>=0.17, scipy>=0.17.0, theano>=0.7.0, lasagne>=0.1, cv2, dlib>=18.18 (only required if using the 'trees' cro... | apache-2.0 |
architecture-building-systems/CityEnergyAnalyst | cea/demand/building_properties.py | 1 | 51616 | """
Classes of building properties
"""
import numpy as np
import pandas as pd
from geopandas import GeoDataFrame as Gdf
from datetime import datetime
from collections import namedtuple
from cea.constants import HOURS_IN_YEAR
from cea.demand import constants
from cea.demand.sensible_loads import calc_hr, calc_hc
from c... | mit |
snowflakedb/snowflake-connector-python | test/integ/pandas/test_arrow_pandas.py | 1 | 33203 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2012-2021 Snowflake Computing Inc. All right reserved.
#
import decimal
import itertools
import random
import time
from datetime import datetime
from decimal import Decimal
import numpy
import pytest
try:
from snowflake.connector.options import insta... | apache-2.0 |
jreback/pandas | pandas/tests/arithmetic/test_period.py | 1 | 56236 | # Arithmetic tests for DataFrame/Series/Index/Array classes that should
# behave identically.
# Specifically for Period dtype
import operator
import numpy as np
import pytest
from pandas._libs.tslibs import IncompatibleFrequency, Period, Timestamp, to_offset
from pandas.errors import PerformanceWarning
import pandas... | bsd-3-clause |
DailyActie/Surrogate-Model | 01-codes/scipy-master/scipy/integrate/_bvp.py | 1 | 39982 | """Boundary value problem solver."""
from __future__ import division, print_function, absolute_import
from warnings import warn
import numpy as np
from numpy.linalg import pinv
from scipy.optimize import OptimizeResult
from scipy.sparse import coo_matrix, csc_matrix
from scipy.sparse.linalg import splu
EPS = np.finf... | mit |
janscience/thunderfish | thunderfish/eodanalysis.py | 1 | 95701 | """
Analysis of EOD waveforms.
## EOD waveform analysis
- `eod_waveform()`: compute an averaged EOD waveform.
- `analyze_wave()`: analyze the EOD waveform of a wave fish.
- `analyze_pulse()`: analyze the EOD waveform of a pulse fish.
- `adjust_eodf()`: adjust EOD frequencies to a standard temperature.
## Similarity ... | gpl-3.0 |
othercriteria/StochasticBlockmodel | Models.py | 1 | 77060 | #!/usr/bin/env python
# Models for generating and fitting networks
# Daniel Klein, 5/11/2012
from __future__ import division
import numpy as np
import scipy.optimize as opt
from scipy.stats import norm
from scipy.linalg import inv, solve
from time import time
from itertools import permutations
from Utility import lo... | mit |
magic2du/contact_matrix | Contact_maps/DeepLearning/DeepLearningTool/DL_contact_matrix_New_server_test_0514.py | 1 | 45710 |
# coding: utf-8
# In[5]:
import sys, os
sys.path.append('../../../libs/')
sys.path.append('../libs/')
sys.path.append('../../libs/')
import os.path
import IO_class
from IO_class import FileOperator
from sklearn import cross_validation
import sklearn
import csv
from dateutil import parser
from datetime import timede... | gpl-2.0 |
mlassnig/pilot | SiteInformation.py | 1 | 104070 | # Class definition:
# SiteInformation
# This class is responsible for downloading, verifying and manipulating queuedata
# Note: not compatible with Singleton Design Pattern due to the subclassing
import os
import re
import commands
import random
import time
import urlparse
import urllib2
from datetime import dat... | apache-2.0 |
toobaz/pandas | pandas/tests/io/test_html.py | 1 | 39374 | from functools import partial
from importlib import reload
from io import BytesIO, StringIO
import os
import re
import threading
import numpy as np
from numpy.random import rand
import pytest
from pandas.compat import is_platform_windows
from pandas.errors import ParserError
import pandas.util._test_decorators as td
... | bsd-3-clause |
johnsmithm/dm | tensorflow/run.py | 1 | 37146 | from __future__ import absolute_import, division, print_function
import cv2
import argparse
import json
import os
import pickle
import math
import numpy as np
from pyimagesearch.transform import four_point_transform
from pyimagesearch import imutils
from sklearn.cluster import KMeans
import tensorflow as tf
import ope... | gpl-2.0 |
gfyoung/pandas | pandas/tests/dtypes/test_dtypes.py | 1 | 38539 | import re
import numpy as np
import pytest
import pytz
from pandas.core.dtypes.base import registry
from pandas.core.dtypes.common import (
is_bool_dtype,
is_categorical,
is_categorical_dtype,
is_datetime64_any_dtype,
is_datetime64_dtype,
is_datetime64_ns_dtype,
is_datetime64tz_dtype,
... | bsd-3-clause |
BiaDarkia/scikit-learn | sklearn/svm/classes.py | 1 | 46817 | import warnings
import numpy as np
from .base import _fit_liblinear, BaseSVC, BaseLibSVM
from ..base import BaseEstimator, RegressorMixin, OutlierMixin
from ..linear_model.base import LinearClassifierMixin, SparseCoefMixin, \
LinearModel
from ..utils import check_X_y
from ..utils.validation import _num_samples
fro... | bsd-3-clause |
jreback/pandas | pandas/core/tools/datetimes.py | 1 | 32563 | from collections import abc
from datetime import datetime
from functools import partial
from itertools import islice
from typing import (
TYPE_CHECKING,
Callable,
List,
Optional,
Tuple,
TypeVar,
Union,
overload,
)
import warnings
import numpy as np
from pandas._libs import tslib
from p... | bsd-3-clause |
pyrrho314/recipesystem | trunk/gempy/scripts/cleanir.py | 1 | 47708 | #!/usr/bin/env python
#
# 2007 Jul 8 - Andrew W Stephens - alpha version
# 2007 Jul 9 - AWS - beta version
# 2007 Jul 10 - AWS - move most operations to cleanquad function
# 2007 Jul 11 - AWS - use stddev to decide whether to keep orig quad
# 2007 Jul 14 - AWS - generalized code to allow different pattern sizes
# 200... | mpl-2.0 |
crazyyoung01/vv | vn.datayes/api.py | 1 | 44331 | #encoding: UTF-8
import os
import json
import time
import requests
import pymongo
import pandas as pd
from datetime import datetime, timedelta
from Queue import Queue, Empty
from threading import Thread, Timer
from pymongo import MongoClient
from requests.exceptions import ConnectionError
from errors import (VNPAST_C... | mit |
DTOcean/dtocean-core | dtocean_core/utils/maintenance.py | 1 | 61055 | # -*- coding: utf-8 -*-
# Copyright (C) 2016-2018 Mathew Topper
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later... | gpl-3.0 |
catalyst-cooperative/pudl | src/pudl/transform/eia861.py | 1 | 92594 | """Module to perform data cleaning functions on EIA861 data tables.
All transformations include:
- Replace . values with NA.
"""
import logging
import pandas as pd
import pudl
from pudl import constants as pc
logger = logging.getLogger(__name__)
BA_ID_NAME_FIXES = (
pd.DataFrame([
# report_date, util... | mit |
zfrenchee/pandas | pandas/tests/generic/test_generic.py | 2 | 35620 | # -*- coding: utf-8 -*-
# pylint: disable-msg=E1101,W0612
from copy import copy, deepcopy
from warnings import catch_warnings
import pytest
import numpy as np
import pandas as pd
from pandas.core.dtypes.common import is_scalar
from pandas import (Series, DataFrame, Panel,
date_range, Panel4D,
... | bsd-3-clause |
Stargrazer82301/CAAPR | CAAPR/CAAPR_IO/CAAPR_IO.py | 1 | 42977 | # Import smorgasbord
import os
import sys
sys.path.insert(0, '../')
import gc
import pdb
import time
import csv
import shutil
import multiprocessing as mp
import numpy as np
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import astropy
astropy.log.setLevel('ERROR')
import astrop... | mit |
kwschultz/vq | PyVQ/pyvq/pyvq.py | 1 | 208427 | #!/usr/bin/env python
from __future__ import print_function
## NOTE: If you edit this, set your "tab" to be 4 spaces in your text editor.
import math
import sys
import argparse
import quakelib
import gc
import operator
import os
scipy_available = True
try:
import scipy.stats
except ImportError:
scipy_availa... | mit |
sserrot/champion_relationships | venv/Lib/site-packages/IPython/core/completer.py | 1 | 73227 | """Completion for IPython.
This module started as fork of the rlcompleter module in the Python standard
library. The original enhancements made to rlcompleter have been sent
upstream and were accepted as of Python 2.3,
This module now support a wide variety of completion mechanism both available
for normal classic P... | mit |
RPGOne/Skynet | numpy-master/numpy/core/tests/test_multiarray.py | 1 | 249647 | from __future__ import division, absolute_import, print_function
import collections
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import functools
import ctypes
import os
import gc
if sys.version_info[0] >= 3:
import builtins
else:
import __builtin__ as bui... | bsd-3-clause |
TinghuiWang/pyActLearn | pyActLearn/graphs/event_analysis.py | 1 | 37651 | import sys
import logging
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.ticker import MultipleLocator
from matplotlib.patches import Rectangle
logger = logging.getLogger(__name__)
recall_scoring_labels = ['Correct', 'Fragmenting', 'Underfill-B', 'Underfill-E', 'Deletion']
fpr_scoring_labels = ['C... | bsd-3-clause |
meteoswiss-mdr/precipattractor | pyscripts/growth_errors_nans.py | 1 | 39057 | #!/usr/bin/env python
from __future__ import division
from __future__ import print_function
import argparse
import numpy as np
import pandas as pd
import sys
import os
import matplotlib as mpl
#mpl.use('Agg')
from matplotlib import ticker
import matplotlib.pyplot as plt
import matplotlib.colors as colors
import matpl... | gpl-3.0 |
mrooney/mintapi | mintapi/api.py | 1 | 57492 | import atexit
from datetime import date, datetime, timedelta
import io
import json
import logging
import os
import os.path
import random
import re
import requests
import subprocess
from sys import platform as _platform
import time
import zipfile
import imaplib
import email
import email.header
import sys # DEBUG
import... | mit |
xhochy/arrow | python/pyarrow/tests/test_pandas.py | 1 | 155305 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
Stargrazer82301/ChrisFit | Old/ChrisFit.py | 1 | 40145 | # Import smorgasbord
from __future__ import division
from __future__ import print_function
import sys
import os
if sys.version_info[0] >= 3:
from builtins import str
from builtins import range
from past.utils import old_div
current_module = sys.modules[__name__]
sys.path.append(str(os.path.split(os.path.dir... | mit |
jniediek/mne-python | mne/viz/utils.py | 1 | 58956 | """Utility functions for plotting M/EEG data
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com>
# ... | bsd-3-clause |
tritemio/FRETBursts | fretbursts/burstlib.py | 1 | 134993 | #
# FRETBursts - A single-molecule FRET burst analysis toolkit.
#
# Copyright (C) 2013-2016 The Regents of the University of California,
# Antonino Ingargiola <tritemio@gmail.com>
#
"""
This module contains all the main FRETBursts analysis functions.
`burstslib.py` defines the fundamental object `Data()`... | gpl-2.0 |
boomsbloom/dtm-fmri | DTM/for_gensim/lib/python2.7/site-packages/matplotlib/dviread.py | 1 | 33321 | """
An experimental module for reading dvi files output by TeX. Several
limitations make this not (currently) useful as a general-purpose dvi
preprocessor, but it is currently used by the pdf backend for
processing usetex text.
Interface::
dvi = Dvi(filename, 72)
# iterate over pages (but only one page is support... | mit |
linebp/pandas | pandas/io/stata.py | 1 | 84072 | """
Module contains tools for processing Stata files into DataFrames
The StataReader below was originally written by Joe Presbrey as part of PyDTA.
It has been extended and improved by Skipper Seabold from the Statsmodels
project who also developed the StataWriter and was finally added to pandas in
a once again improv... | bsd-3-clause |
TaxIPP-Life/Til | til/data/data/Patrimoine.py | 1 | 41751 | # -*- coding:utf-8 -*-
'''
Created on 2 août 2013
@author: a.eidelman
'''
import os
import numpy as np
from pandas import merge, DataFrame, Series, concat, read_csv
import pdb
# 1- Importation des classes/librairies/tables nécessaires à l'importation des
# données de l'enquête Patrimoine
from til.data.DataTil impo... | gpl-3.0 |
MiladHooshyar/DrainageNetworkExtraction | DrainageNetworkExtraction/Valley_Fun.py | 1 | 71690 | import arcpy
from arcpy import env
from arcpy.sa import *
import numpy as np
import scipy
from scipy import ndimage, sparse
from scipy.stats import norm
import itertools
import math
import os
import matplotlib.pyplot as pl
arcpy.CheckOutExtension("Spatial")
def segment_size_curvature(curve_Array):
min_c = np.nan... | mit |
brclark-usgs/flopy | flopy/utils/util_list.py | 1 | 43216 | """
util_list module. Contains the mflist class.
This classes encapsulates modflow-style list inputs away
from the individual packages. The end-user should not need to
instantiate this class directly.
some more info
"""
from __future__ import division, print_function
import os
import warnings
i... | bsd-3-clause |
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