repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
inkenbrandt/loggerloader | loggerloader/llgui.py | 1 | 107310 | import matplotlib
matplotlib.use("TkAgg")
from matplotlib.backends.backend_tkagg import NavigationToolbar2Tk, FigureCanvasTkAgg
# Implement the default Matplotlib key bindings.
import matplotlib.pyplot as plt
from matplotlib import style
from matplotlib.backend_bases import key_press_handler
from matplotlib.backends.b... | mit |
chrisbarber/dask | dask/bag/core.py | 1 | 55945 | from __future__ import absolute_import, division, print_function
from collections import Iterable, Iterator, defaultdict
from functools import wraps, partial
import itertools
import math
import os
import types
import uuid
from random import Random
from warnings import warn
from distutils.version import LooseVersion
f... | bsd-3-clause |
jwdegee/2017_eLife | defs_pupil.py | 1 | 143772 | #!/usr/bin/env python
# encoding: utf-8
"""
================================================
Created by Jan Willem de Gee on 2014-06-01.
Copyright (c) 2009 jwdegee. All rights reserved.
================================================
"""
import os
import sys
import datetime
import pickle
import math
import numpy... | mit |
alexsavio/scikit-learn | sklearn/model_selection/_split.py | 1 | 62253 | """
The :mod:`sklearn.model_selection._split` module includes classes and
functions to split the data based on a preset strategy.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# Ragha... | bsd-3-clause |
mitschabaude/nanopores | nanopores/models/randomwalk.py | 1 | 37095 | # (c) 2017 Gregor Mitscha-Baude
"random walk of many particles in cylindrical pore"
# TODO: bug: walldist = 2 works like what would be expected for = 1
# have hardcoded *2 in .contains_point
# => properly investigate matplotlib.path.contains_point
# and make code transparent
import numpy as np
import matplotlib.pyplot ... | mit |
tschaume/pymatgen | pymatgen/analysis/chemenv/coordination_environments/voronoi.py | 1 | 40703 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
import logging
import numpy as np
import time
from pymatgen.core.structure import Structure
from pymatgen.core.sites import PeriodicSite
from monty.json import MSONable
from scipy.spatial import Voronoi
from ... | mit |
jrkerns/pylinac | pylinac/ct.py | 1 | 69530 | """The CatPhan module automatically analyzes DICOM images of a CatPhan 504, 503, or 600 acquired when doing CBCT or CT quality assurance.
It can load a folder or zip file that the images are in and automatically correct for translational and rotational errors.
It can analyze the HU regions and image scaling (CTP404), t... | mit |
Carreau/OOCytes | tifffile.py | 1 | 130291 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
# tifffile.py
# Copyright (c) 2008-2013, Christoph Gohlke
# Copyright (c) 2008-2013, The Regents of the University of California
# Produced at the Laboratory for Fluorescence Dynamics
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or wit... | bsd-3-clause |
rajul/mne-python | mne/io/base.py | 1 | 89565 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Matti Hamalainen <msh@nmr.mgh.harvard.edu>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
# Teon Brooks <teon.brooks@gmail.com>
# Marijn van Vliet <w.m.vanvli... | bsd-3-clause |
NixaSoftware/CVis | venv/lib/python2.7/site-packages/pandas/tests/series/test_indexing.py | 1 | 91088 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
import pytest
from datetime import datetime, timedelta
from numpy import nan
import numpy as np
import pandas as pd
import pandas._libs.index as _index
from pandas.core.dtypes.common import is_integer, is_scalar
from pandas import (Index, Series, DataFrame, isna,
... | apache-2.0 |
yaukwankiu/armor | pattern_.py | 1 | 62433 | # -*- coding: utf-8 -*-
# defining the basic object we will be working with
# adapted from :
# /media/KINGSTON/ARMOR/ARMOR/python/weatherPattern.py ,
# /media/KINGSTON/ARMOR/ARMOR/python/clustering.py ,
# /media/KINGSTON/ARMOR/2013/pythonJan2013/basics.py
# Yau Kwan Kiu, Room 801, 23-1-2013
###################... | cc0-1.0 |
hyperspy/hyperspy | hyperspy/signal.py | 1 | 252831 | # -*- coding: utf-8 -*-
# Copyright 2007-2021 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
aerosara/thesis | notebooks/thesis_functions/major_simulation_components.py | 1 | 35972 | # -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <codecell>
import numpy as np
import pandas as pd
import scipy.integrate as integrate
import math
from IPython.display import display
from IPython.core.display import HTML
import thesis_functions.utilities
from thesis_functions.initial_conditions import initial_... | mit |
astronomeara/xastropy-old | xastropy/spec/voigt.py | 1 | 34034 | """
#;+
#; NAME:
#; voigt
#; Version 1.0
#;
#; PURPOSE:
#; Module for Voigt profiles
#; 01-Nov-2014 by JXP
#; ## Heavily adapted from Ryan Cooke (e.g. alis)
#;-
#;------------------------------------------------------------------------------
"""
from __future__ import print_function, absolute_import, divi... | bsd-3-clause |
rerpy/rerpy | rerpy/io/erpss.py | 1 | 34069 | # This file is part of rERPy
# Copyright (C) 2012-2013 Nathaniel Smith <njs@pobox.com>
# See file LICENSE.txt for license information.
import os.path
import struct
import os
import string
import bisect
import sys
import numpy as np
import pandas
from rerpy.data import DataFormat, Dataset
from rerpy.util import maybe... | gpl-2.0 |
rbirger/OxfordHCVNonSpatial | Non-Spatial Model Outline and Code_old.py | 1 | 44084 | # -*- coding: utf-8 -*-
# <nbformat>3.0</nbformat>
# <markdowncell>
# ###Description and preliminary code for Continuous-Time Markov Chain Model
#
# This model will test the importance of including a spatial component in the system. We will use ODEs to describe the dynamics of each lineage and competition between li... | bsd-2-clause |
jdavidrcamacho/Tests_GP | MSc_results/results_kepler2.py | 1 | 38491 | import sys
#sys.path.append('/home/camacho/Downloads/emcee-master')
#sys.path.append('/home/up200908455/Desktop/Github/Gedi')
#sys.path.append('/home/up200908455/Desktop/Github/Emcee')
#sys.path.append('/home/up200908455/Desktop/Github/George')
#sys.path.append('/home/up200908455/Desktop/Github/Corner')
#sys.path.appen... | mit |
quimaguirre/diana | scripts/old_scripts/select_classifier.py | 1 | 31119 | import argparse
import copy
import cPickle
import matplotlib.pyplot as plt
import ntpath
import numpy as np
import pandas as pd
import pylab
#from pylab import plot, show, savefig, xlim, figure, hold, ylim, legend, boxplot, setp, axes, xlabel, ylabel
import scipy
import time
import sys, os, re
from sklearn.decompositi... | mit |
dcroc16/skunk_works | google_appengine/google/appengine/api/appinfo.py | 1 | 64494 | #!/usr/bin/env python
#
# Copyright 2007 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law o... | mit |
bert9bert/statsmodels | statsmodels/regression/mixed_linear_model.py | 2 | 91501 | """
Linear mixed effects models are regression models for dependent data.
They can be used to estimate regression relationships involving both
means and variances.
These models are also known as multilevel linear models, and
hierarchical linear models.
The MixedLM class fits linear mixed effects models to data, and
p... | bsd-3-clause |
rs2/pandas | pandas/tests/io/formats/test_to_latex.py | 1 | 38013 | import codecs
from datetime import datetime
from textwrap import dedent
import pytest
import pandas as pd
from pandas import DataFrame, Series
import pandas._testing as tm
from pandas.io.formats.format import DataFrameFormatter
from pandas.io.formats.latex import (
RegularTableBuilder,
RowBodyIterator,
R... | bsd-3-clause |
lasersonlab/phip-stat | phip/cli.py | 1 | 33134 | # Copyright 2016 Uri Laserson
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,... | apache-2.0 |
wxgeo/geophar | wxgeometrie/geolib/feuille.py | 1 | 70239 | # -*- coding: utf-8 -*-
##--------------------------------------#######
# Feuille #
##--------------------------------------#######
# WxGeometrie
# Dynamic geometry, graph plotter, and more for french mathematic teachers.
# Copyright (C) 2005-2013 Nicolas Pourcelot
#
# ... | gpl-2.0 |
roshantha9/AbstractManycoreSim | src/analyse_results/AnalyseResults_Exp_ACTest_MultiSeed.py | 1 | 33568 | import sys, os, csv, pprint, math
from collections import OrderedDict
import numpy as np
import random
import shutil
import math
import matplotlib
matplotlib.use('Qt4Agg')
import matplotlib.pyplot as plt
plt.style.use('bmh_rosh')
#from mpl_toolkits.mplot3d import Axes3D
import itertools
from itertools import cycle # ... | gpl-3.0 |
nektor211/imgaug | imgaug/parameters.py | 1 | 101556 | from __future__ import print_function, division, absolute_import
from . import imgaug as ia
from .external.opensimplex import OpenSimplex
from abc import ABCMeta, abstractmethod
import numpy as np
import copy as copy_module
import six
import six.moves as sm
import scipy
import numbers
from collections import defaultdic... | mit |
florian-f/sklearn | sklearn/linear_model/stochastic_gradient.py | 1 | 39372 | # Authors: Peter Prettenhofer <peter.prettenhofer@gmail.com> (main author)
# Mathieu Blondel (partial_fit support)
#
# License: BSD Style.
"""Classification and regression using Stochastic Gradient Descent (SGD)."""
import numpy as np
import scipy.sparse as sp
from abc import ABCMeta, abstractmethod
import w... | bsd-3-clause |
datapythonista/pandas | pandas/tests/io/pytables/test_append.py | 2 | 33062 | import datetime
from datetime import timedelta
import re
from warnings import catch_warnings
import numpy as np
import pytest
from pandas._libs.tslibs import Timestamp
import pandas.util._test_decorators as td
import pandas as pd
from pandas import (
DataFrame,
MultiIndex,
Series,
_testing as tm,
... | bsd-3-clause |
CalebBell/thermo | thermo/utils/t_dependent_property.py | 1 | 145532 | # -*- coding: utf-8 -*-
'''Chemical Engineering Design Library (ChEDL). Utilities for process modeling.
Copyright (C) 2016, 2017, 2018, 2019, 2020 Caleb Bell <Caleb.Andrew.Bell@gmail.com>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (t... | mit |
blaze/dask | dask/dataframe/tests/test_arithmetics_reduction.py | 1 | 51724 | from datetime import datetime
import warnings
import pytest
import numpy as np
import pandas as pd
from pandas.api.types import is_datetime64_ns_dtype
import dask.dataframe as dd
from dask.dataframe._compat import PANDAS_GT_100, PANDAS_VERSION
from dask.dataframe.utils import (
assert_eq,
assert_dask_graph,
... | bsd-3-clause |
openego/eDisGo | edisgo/tools/pypsa_io.py | 1 | 82272 | """
This module provides tools to convert graph based representation of the grid
topology to PyPSA data model. Call :func:`to_pypsa` to retrieve the PyPSA grid
container.
"""
import numpy as np
import pandas as pd
import itertools
from math import pi, sqrt
from pypsa import Network as PyPSANetwork
from pypsa.io import... | agpl-3.0 |
brunojulia/ultracoldUB | DS_interfaz.py | 1 | 67472 | # -*- coding: utf-8 -*-
"""
Created on Sun Oct 30 16:00:59 2016
@author: laura18
"""
import os
import subprocess
from PyQt4 import QtGui
from PyQt4.QtCore import *
from PyQt4.QtGui import *
from PyQt4.uic import loadUiType
import math
import numpy as np
import time
import matplotlib.pyplot as plt
imp... | gpl-3.0 |
abalkin/numpy | numpy/lib/tests/test_function_base.py | 1 | 127697 | import operator
import warnings
import sys
import decimal
from fractions import Fraction
import math
import pytest
import numpy as np
from numpy import ma
from numpy.testing import (
assert_, assert_equal, assert_array_equal, assert_almost_equal,
assert_array_almost_equal, assert_raises, assert_allclose, IS_PY... | bsd-3-clause |
yarikoptic/seaborn | seaborn/axisgrid.py | 1 | 30491 | from __future__ import division
from itertools import product
import numpy as np
import pandas as pd
import matplotlib as mpl
import matplotlib.pyplot as plt
from . import utils
from .palettes import color_palette
class FacetGrid(object):
"""Subplot grid for applying plotting functions to subsets of data."""
... | bsd-3-clause |
brendanjmeade/stress_transfer | ProcessSrcmod.py | 1 | 54610 | from __future__ import division
import math
import code
import datetime
import urllib
import utm
import os.path
import numpy as np
import matplotlib.pyplot as plt
import mpl_toolkits.basemap.pyproj as pyproj
from scipy import io as sio
from okada_wrapper import dc3d0wrapper, dc3dwrapper
from matplotlib import cm
# For... | mit |
Leguark/GeMpy | build/lib/GeMpy/GeMpy_core.py | 1 | 40359 | """
Module with classes and methods to perform implicit regional modelling based on
the potential field method.
Tested on Ubuntu 14
Created on 10/10 /2016
@author: Miguel de la Varga
"""
import theano
import theano.tensor as T
import numpy as np
import sys, os
import pandas as pn
#import matplotlib.pyplot as plt
c... | mit |
tonnrueter/pymca_devel | PyMca/ScanWindow.py | 1 | 78228 | #/*##########################################################################
# Copyright (C) 2004-2012 European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# This toolkit is free software; you can redistribute it and/or m... | gpl-2.0 |
temmeand/scikit-rf | skrf/network2.py | 1 | 31542 |
from six.moves import xrange # for Python3 compatibility
from .frequency import Frequency
from .mathFunctions import *
from .plotting import plot_complex_rectangular,plot_rectangular, smith
from .util import get_fid, get_extn, find_nearest_index,slice_domain
from scipy import signal
import numpy as npy
from numpy i... | bsd-3-clause |
magenta/magenta | magenta/models/rl_tuner/rl_tuner.py | 1 | 81040 | # Copyright 2021 The Magenta Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in ... | apache-2.0 |
vhaasteren/piccard | testing/readprepset.py | 1 | 32639 | #!/usr/bin/env python
# encoding: utf-8
# vim: tabstop=4:softtabstop=4:shiftwidth=4:expandtab
"""
readprepset.py
Requirements:
- numpy: pip install numpy
- matplotlib: macports, apt-get
Created by vhaasteren on 2013-08-06.
Copyright (c) 2013 Rutger van Haasteren
Work that uses this code should reference va... | gpl-3.0 |
leeping/mdtraj | mdtraj/core/trajectory.py | 1 | 78097 | ##############################################################################
# MDTraj: A Python Library for Loading, Saving, and Manipulating
# Molecular Dynamics Trajectories.
# Copyright 2012-2014 Stanford University and the Authors
#
# Authors: Robert McGibbon
# Contributors: Kyle A. Beauchamp, TJ Lane, Jo... | lgpl-2.1 |
cassandra-sh/corrset | jackknifer.py | 1 | 38569 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
jackknifer.py
@author Cassandra Henderson
cassandra.s.henderson@gmail.com
qualifier -> mpi_prep -> mpi_run -> mpi_read -> * jackknifer *
Program Description:
jackknifer will (first draft) take a set of count matrices and meta info
and use it to compute the c... | mit |
iosonofabio/singlet | singlet/dataset/plot.py | 1 | 56332 | # vim: fdm=indent
# author: Fabio Zanini
# date: 16/08/17
# content: Dataset functions to plot gene expression and phenotypes
# Modules
import warnings
import numpy as np
import pandas as pd
import matplotlib as mpl
from matplotlib import cm
from .plugins import Plugin
from ..config import config
try:
... | mit |
NiekB4/2016_Group07_Transit-BuiltEnvironment | PTStopCalc/pt_stop_calc_dockwidget.py | 1 | 36158 | # -*- coding: utf-8 -*-
"""
/***************************************************************************
PTStopCalc
A QGIS plugin for the GEO 1005 Spatial Decision Support System, MSc Geomatics, TU Delft
-------------------
begin : 2016-12-20
git sha ... | gpl-2.0 |
jfsehuanes/thunderfish | thunderfish/voronoi.py | 1 | 44337 | """
Analysis of Voronoi diagrams based on scipy.spatial.
class Voronoi: Compute and analyse Voronoi diagrams.
"""
import numpy as np
import scipy.spatial as sp
class Voronoi:
"""
Input points
------------
The points from the Voronoi diagram is constructed.
ndim: int
The dimension o... | gpl-3.0 |
detrout/debian-statsmodels | statsmodels/duration/hazard_regression.py | 1 | 62202 | import numpy as np
from statsmodels.base import model
import statsmodels.base.model as base
from statsmodels.tools.decorators import cache_readonly
from scipy.optimize import brent
"""
Implementation of proportional hazards regression models for duration
data that may be censored ("Cox models").
References
----------... | bsd-3-clause |
kasperschmidt/GLASSinspectionGUIs | visualinspection.py | 1 | 199703 | """
----------------------------
NAME
----------------------------
visualinspection.py
----------------------------
PURPOSE/DESCRIPTION
----------------------------
GUIs for visual inspection of data products from the Grism Lens-Amplified Survey
from Space (GLASS) data releases and ancillary data.
visualinsp... | mit |
rfleissner/ChEsher | test/meshing_channel/calcMesh_new.py | 1 | 34253 | #!/usr/bin/python -d
#
# Copyright (C) 2016 Reinhard Fleissner
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# Th... | gpl-2.0 |
humdings/zipline | zipline/algorithm.py | 1 | 92371 | #
# Copyright 2015 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
CxAalto/gtfspy | gtfspy/routing/test/test_multi_objective_pseudo_connection_scan_profiler.py | 1 | 39897 | from unittest import TestCase
import networkx
from six import StringIO
from gtfspy.routing.connection import Connection
from gtfspy.routing.label import min_arrival_time_target, LabelTimeWithBoardingsCount, LabelTime
from gtfspy.routing.multi_objective_pseudo_connection_scan_profiler import MultiObjectivePseudoCSAPro... | mit |
JosePedroMatos/Tethys | gpu/manager.py | 1 | 50830 | # coding: utf-8
'''
Created on 24/02/2016
@author: Jose Pedro Matos
'''
import datetime as dt
import numpy as np
import pickle
import re
import json
import dateutil.parser
import matplotlib.pyplot as plt
from celery import current_task
from dateutil.relativedelta import relativedelta
from gpu.ann im... | mit |
rema-git/panoptikum | panoptikum.py | 1 | 40121 | # -*- coding: utf-8 -*-
"""
Created on Tue Jul 23 16:12:46 2013
@author: Reinhardt A.W. Maier <rema@zaehlwerk.net>
"""
import gtk
import apogee
import loadColormap
import imageAnalyse
import math
import gio
import os
import pandas as pd
import pickle
import matplotlib.pyplot as plt
import matplotlib.gr... | gpl-3.0 |
jamestwebber/scipy | scipy/optimize/nonlin.py | 1 | 48291 | r"""
Nonlinear solvers
-----------------
.. currentmodule:: scipy.optimize
This is a collection of general-purpose nonlinear multidimensional
solvers. These solvers find *x* for which *F(x) = 0*. Both *x*
and *F* can be multidimensional.
Routines
~~~~~~~~
Large-scale nonlinear solvers:
.. autosummary::
newton... | bsd-3-clause |
DynaLite/DynaLite_1.0 | Sources/SpeechProcessing/pyAudioAnalysis/dynaliteSpeakerDiarization.py | 1 | 40895 | ###############################################################################
#
# This File is adapted from pyAudioAnalysis
# https://github.com/tyiannak/pyAudioAnalysis
#
# Modifications were made to the function: speakerDiarization
#
#
###########################################################... | mit |
inkenbrandt/Snake_Valley | Snake_Valley_Data_Import.py | 1 | 32911 | #-*- coding: utf-8 -*-
import pandas as pd
import numpy as np
import os
import glob
import re
import xmltodict
from datetime import datetime
def jumpfix(df, meas, threashold=0.005):
'''
removes jumps or jolts in time series data (where offset is lasting)
df = dataframe to manipulate
meas = name of fie... | gpl-2.0 |
stefco/geco_data | geco_slow_channel_plot.py | 1 | 80233 | #!/usr/bin/env python
# (c) Stefan Countryman 2017
###############################################################################
#
# IMPORT ARGUMENT PARSER
#
###############################################################################
import argparse
import textwrap
import collections
# ALL OTHER IMPORTS LISTED ... | mit |
jjhelmus/artview | docs/sphinxext/gen_rst.py | 1 | 38288 | """
Example generation for Py-ART
Generate the rst files for the examples by iterating over the Python
example files.
Files that generate images should state with 'plot'
"""
# This files was adapted from the scikit-learn file of the same name:
# https://github.com/scikit-learn/scikit-learn/blob/master/doc/sphinxe... | bsd-3-clause |
xray/xray | xarray/core/groupby.py | 1 | 35230 | import datetime
import functools
import warnings
import numpy as np
import pandas as pd
from . import dtypes, duck_array_ops, nputils, ops
from .arithmetic import SupportsArithmetic
from .common import ImplementsArrayReduce, ImplementsDatasetReduce
from .concat import concat
from .formatting import format_array_flat
... | apache-2.0 |
mbeyeler/pulse2percept | pulse2percept/models/base.py | 1 | 36720 | """`BaseModel`, `Model`, `NotBuiltError`, `Percept`, `SpatialModel`,
`TemporalModel`"""
import sys
from abc import ABCMeta, abstractmethod
from copy import deepcopy
import numpy as np
from ..implants import ProsthesisSystem
from ..stimuli import Stimulus
from ..percepts import Percept
from ..utils import PrettyPrin... | bsd-3-clause |
Amarchuk/2FInstability | core/velocityEllipsoidReconstr.py | 1 | 43327 | __author__ = 'amarch'
# -*- coding: utf-8 -*-
from sys import *
import os
from numpy import *
import matplotlib.pyplot as plt
from scipy.optimize import leastsq
import scipy
import math
import heapq
from scipy.interpolate import spline
def run_once(f):
def wrapper(*args, **kwargs):
if not globals().has_ke... | gpl-3.0 |
J535D165/recordlinkage | recordlinkage/base.py | 1 | 35857 | # -*- coding: utf-8 -*-
"""Base module for record linkage."""
from __future__ import division
import time
import warnings
from abc import ABCMeta, abstractmethod
from joblib import Parallel, delayed, cpu_count
import numpy as np
import pandas
from recordlinkage import rl_logging as logging
import recordlinkage.c... | bsd-3-clause |
TomAugspurger/pandas | pandas/tests/plotting/test_datetimelike.py | 1 | 55387 | """ Test cases for time series specific (freq conversion, etc) """
from datetime import date, datetime, time, timedelta
import pickle
import sys
import numpy as np
import pytest
import pandas.util._test_decorators as td
from pandas import DataFrame, Index, NaT, Series, isna
import pandas._testing as tm
from pandas.c... | bsd-3-clause |
agiovann/Constrained_NMF | use_cases/eLife_scripts/preprocessing_files/preprocess_zebrafish_original.py | 2 | 34166 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Complete pipeline for online processing using OnACID.
@author: Andrea Giovannucci @agiovann and Eftychios Pnevmatikakis @epnev
Special thanks to Andreas Tolias and his lab at Baylor College of Medicine
for sharing their data used in this demo.
KERAS_BACKEND=tensorflow... | gpl-2.0 |
jseabold/statsmodels | statsmodels/tsa/arima/specification.py | 4 | 46348 | """
SARIMAX specification class.
Author: Chad Fulton
License: BSD-3
"""
import numpy as np
import pandas as pd
from statsmodels.tools.data import _is_using_pandas
from statsmodels.tsa.base.tsa_model import TimeSeriesModel
from statsmodels.tsa.statespace.tools import (
is_invertible, constrain_stationary_univariat... | bsd-3-clause |
gem/oq-engine | openquake/calculators/tests/classical_test.py | 1 | 42342 | # -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2015-2021 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the Licen... | agpl-3.0 |
schae234/Camoco | camoco/Expr.py | 2 | 32980 | #! /usr/bin/python3
from .Camoco import Camoco
from .RefGen import RefGen
from .Tools import memoize
from .Locus import Locus
from .Exceptions import CamocoGeneNameError,CamocoAccessionNameError,CamocoGeneAbsentError
from scipy.spatial.distance import pdist, squareform, euclidean
from scipy.stats import hypergeom, pea... | mit |
NERC-CEH/arcapi | arcapi.py | 1 | 102141 | """
#-------------------------------------------------------------------------------
# Name: arcapi.arcapi
# Purpose: Core module for convenient API for arcpy
#
# Authors: Filip Kral, Caleb Mackey
#
# Created: 01/02/2014
# Licence: LGPL v3
#-----------------------------------------------... | lgpl-3.0 |
brynpickering/calliope | calliope/test/test_core_preprocess.py | 1 | 47596 | import pytest # pylint: disable=unused-import
import os
import pandas as pd
import numpy as np
import calliope
import calliope.exceptions as exceptions
from calliope.core.attrdict import AttrDict
from calliope.core.preprocess import time
from calliope.test.common.util import build_test_model as build_model
from cal... | apache-2.0 |
jgliss/pyplis | pyplis/dataset.py | 1 | 46074 | # -*- coding: utf-8 -*-
#
# Pyplis is a Python library for the analysis of UV SO2 camera data
# Copyright (C) 2017 Jonas Gliss (jonasgliss@gmail.com)
#
# This program is free software: you can redistribute it and/or
# modify it under the terms of the GNU General Public License a
# published by the Free Software Foundat... | gpl-3.0 |
Remper/sociallink | align-train/evaluation/evaluation.py | 1 | 37242 | #!/usr/bin/env python3
import sys
from os import path
import logging
import argparse
import warnings
import os
import time
import pandas as pd
import numpy as np
import numexpr as ne
import matplotlib.pyplot as plt
from sklearn.calibration import calibration_curve
from sklearn.metrics import brier_score_loss
_modul... | apache-2.0 |
zdvresearch/fast15-paper-extras | ecfs_analyze_logs/src/analyze_NEW_CATEGORIES_SIZE_JSON_DATA.py | 1 | 32060 | #!/usr/bin/env python
__author__ = 'Federico G. Padua'
import matplotlib
matplotlib.use('Agg')
import json
import os
import numpy as np
import matplotlib.pyplot as plt
import argparse
#plt.rc('text', usetex=True)
#plt.rc('font', **{'family': 'serif', 'serif': ['Computer Modern']})
#plt.rc('text', usetex=True)
def ... | mit |
manpan-1/steel_toolbox | PySS/polygonal.py | 1 | 37896 | # -*- coding: utf-8 -*-
"""
A framework for the study of polygonal profiles.
"""
import os
import numpy as np
import PySS.steel_design as sd
import PySS.lab_tests as lt
import PySS.analytic_geometry as ag
import PySS.scan_3D as s3d
import pickle
from matplotlib import pyplot as plt
from mpl_toolkits.mplot3d import Ax... | mit |
silky/airflow | airflow/www/app.py | 1 | 69486 | from __future__ import print_function
from __future__ import division
from builtins import str
from past.utils import old_div
import copy
from datetime import datetime, timedelta
import dateutil.parser
from functools import wraps
import inspect
import json
import logging
import os
import socket
import sys
import time
... | apache-2.0 |
xuewei4d/scikit-learn | sklearn/tests/test_multiclass.py | 4 | 32525 | import numpy as np
import scipy.sparse as sp
import pytest
from re import escape
from sklearn.utils._testing import assert_array_equal
from sklearn.utils._testing import assert_almost_equal
from sklearn.utils._testing import assert_raises
from sklearn.utils._testing import assert_warns
from sklearn.utils._testing imp... | bsd-3-clause |
argenta-web/argenta-web.github.io | MEFaplicado-html/estado_plano/codigos/Derivando-FuncoesFormaEstadoPlano4nos.py | 2 | 32599 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Created on Fri May 10 14:46:37 2019
Funções de forma ok!
VERIFICAR POIS FOI ALTERADA A ORDEM DOS NÓS NAS FUNÇÕES DE INTERPOLAÇÃO!!!
@author: markinho
"""
import sympy as sp
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import cm
from mpl_toolk... | mit |
chaluemwut/fbserver | venv/lib/python2.7/site-packages/sklearn/cross_validation.py | 1 | 56321 | """
The :mod:`sklearn.cross_validation` module includes utilities for cross-
validation and performance evaluation.
"""
# Author: Alexandre Gramfort <alexandre.gramfort@inria.fr>,
# Gael Varoquaux <gael.varoquaux@normalesup.org>,
# Olivier Grisel <olivier.grisel@ensta.org>
# License: BSD 3 clause
from... | apache-2.0 |
rohit21122012/DCASE2013 | runs/2013/dnngd/dnn6.py | 1 | 32571 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# DCASE 2016::Acoustic Scene Classification / Baseline System
#import sys
#sys.path.insert(0, '../')
from src.ui import *
from src.general import *
from src.files import *
from src.features import *
from src.dataset import *
from src.evaluation import *
import numpy
im... | mit |
rajegannathan/grasp-lift-eeg-cat-dog-solution-updated | python-packages/xgboost-0.40/wrapper/xgboost.py | 1 | 33036 | # coding: utf-8
"""
xgboost: eXtreme Gradient Boosting library
Version: 0.40
Authors: Tianqi Chen, Bing Xu
Early stopping by Zygmunt Zając
"""
from __future__ import absolute_import
import os
import sys
import re
import ctypes
import platform
import collections
import numpy as np
import scipy.sparse
try:
from ... | bsd-3-clause |
nblago/utils | src/photometry/photometry.py | 1 | 50203 |
# coding: utf-8
# # Photometry
# @author: Nadia Blagorodnova
# From astropy and [Photutils](http://photutils.readthedocs.io/en/stable/).
from astropy import units as u
from astropy.table import Table
from astropy.table import Column
from astropy.coordinates import SkyCoord
from astropy.coordinates import EarthLoca... | mit |
gfyoung/pandas | pandas/tests/series/test_arithmetic.py | 1 | 30311 | from datetime import timedelta
import operator
import numpy as np
import pytest
import pytz
from pandas._libs.tslibs import IncompatibleFrequency
from pandas.core.dtypes.common import is_datetime64_dtype, is_datetime64tz_dtype
import pandas as pd
from pandas import (
Categorical,
Index,
IntervalIndex,
... | bsd-3-clause |
wjlei1990/pyflex | src/pyflex/window_selector.py | 1 | 39135 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Class managing the actual window selection process.
:copyright:
Lion Krischer (krischer@geophysik.uni-muenchen.de), 2014
:license:
GNU General Public License, Version 3
(http://www.gnu.org/copyleft/gpl.html)
"""
from __future__ import (absolute_import, divi... | gpl-3.0 |
agogear/corpkit | corpkit/interface.py | 1 | 62813 | #!usr/bin/env python
#tkNotebook
#Created By: Patrick T. Cossette <cold_soul79078@yahoo.com>
#tkNotebook allows users to make notebook widgets in Tk
#This software may be modified and redistributed, as long as any and all changes made
#From here on are stated, and ("Created By: Patrick T. Cossette <cold_soul79078@yah... | mit |
d-chambers/seisobs | seisobs/core.py | 1 | 35220 | # -*- coding: utf-8 -*-
"""
Created on Sat Jan 30 13:13:36 2016
@author: derrick
functions to read a single S-file into a catalog object
"""
import obspy
import os
import seisobs
import pandas as pd
import warnings
from builtins import str as text
def seis2cat(sfile, authority='local', inventory_object=None,
... | mit |
DailyActie/Surrogate-Model | 01-codes/scikit-learn-master/sklearn/metrics/pairwise.py | 1 | 45525 | # -*- coding: utf-8 -*-
# Authors: Alexandre Gramfort <alexandre.gramfort@inria.fr>
# Mathieu Blondel <mathieu@mblondel.org>
# Robert Layton <robertlayton@gmail.com>
# Andreas Mueller <amueller@ais.uni-bonn.de>
# Philippe Gervais <philippe.gervais@inria.fr>
# Lars Buitinck ... | mit |
snowflakedb/snowflake-connector-python | test/integ/test_cursor.py | 1 | 42334 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2012-2021 Snowflake Computing Inc. All right reserved.
#
import decimal
import json
import logging
import os
import time
from datetime import datetime
import mock
import pytest
import pytz
import snowflake.connector
from snowflake.connector import (
... | apache-2.0 |
timcera/tsgettoolbox | tsgettoolbox/functions/modis.py | 1 | 30089 | # -*- coding: utf-8 -*-
import datetime
import mando
try:
from mando.rst_text_formatter import RSTHelpFormatter as HelpFormatter
except ImportError:
from argparse import RawTextHelpFormatter as HelpFormatter
import numpy as np
import pandas as pd
from requests import Session
from tstoolbox import tsutils
fro... | bsd-3-clause |
mjudsp/Tsallis | sklearn/tree/tree.py | 1 | 40469 | """
This module gathers tree-based methods, including decision, regression and
randomized trees. Single and multi-output problems are both handled.
"""
# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Da... | bsd-3-clause |
tu-rbo/differentiable-particle-filters | methods/dpf.py | 1 | 39079 | import os
import numpy as np
import sonnet as snt
import tensorflow as tf
import matplotlib.pyplot as plt
from utils.data_utils import wrap_angle, compute_staticstics, split_data, make_batch_iterator, make_repeating_batch_iterator
from utils.method_utils import atan2, compute_sq_distance
from utils.plotting_utils impo... | mit |
lisa-lab/pings | models/work_in_progress/src/graph.py | 1 | 60055 | # coding=utf-8
import bisect
from cgi import parse_qs
from collections import defaultdict
import cPickle
import json
import os
import sys
import time
from wsgiref.simple_server import make_server
import numpy
from scipy.special import erf
try:
#The following import are needed only for training
import matplotl... | bsd-3-clause |
JaviFdezT/brush_up | BrushUp/mainPage.py | 1 | 70204 |
import os
import shutil
import random
import math
import time
import sqlite3
import webbrowser
from tkinter import *
from tkinter import filedialog,colorchooser,messagebox
from tkinter.ttk import *
import matplotlib.pyplot as plt
import PIL
import pronouncing
from PIL import ImageFont
from PIL import I... | mit |
cosmonaut/chess_analog_daq | qt_analog_daq.py | 1 | 48933 | import sys
import os
import select
import collections
import math
import struct
import re
import datetime
import numpy as np
import comedi as c
from PyQt4 import QtGui, QtCore, Qt
from matplotlib.figure import Figure
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
COMEDI_PROC_F = "... | mit |
PYPIT/COS_REDUX | cosredux/trace.py | 1 | 32302 | """ Trace the source in Data file
"""
from __future__ import (print_function, absolute_import, division, unicode_literals)
import numpy as np
import pdb
import glob
from astropy.table import Table
from astropy.io import fits
from matplotlib import pyplot as plt
from scipy.optimize import curve_fit
from xastropy.xutil... | bsd-2-clause |
dgwakeman/mne-python | mne/preprocessing/ica.py | 1 | 88611 | # Authors: Denis A. Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Juergen Dammers <j.dammers@fz-juelich.de>
#
# License: BSD (3-clause)
from copy import deepcopy
from inspect import getargspec, isfunction
from collections import namedtuple
impor... | bsd-3-clause |
RRCKI/pilot | pUtil.py | 1 | 168482 | import sys, os, signal, time, shutil, cgi
import commands, re
import urllib
from xml.dom import minidom
from xml.dom.minidom import Document
from xml.dom.minidom import parse, parseString
# Initialize the configuration singleton
import environment
env = environment.set_environment()
#env = Configuration()
from proce... | apache-2.0 |
GuessWhoSamFoo/pandas | pandas/tests/frame/test_missing.py | 1 | 31904 | # -*- coding: utf-8 -*-
from __future__ import print_function
import datetime
from distutils.version import LooseVersion
import dateutil
import numpy as np
import pytest
from pandas.compat import lrange
import pandas.util._test_decorators as td
import pandas as pd
from pandas import Categorical, DataFrame, Series,... | bsd-3-clause |
oaelhara/numbbo | code-postprocessing/bbob_pproc/pplogloss.py | 1 | 33152 | #! /usr/bin/env python
# -*- coding: utf-8 -*-
"""Module for computing ERT loss ratio
This module outputs figures and tables showing ERT loss ratios.
Comparisons are based on computing the ratio between an ERT value and a
reference (best) ERT value (or the inverse)
"""
from __future__ import absolute_import
import... | bsd-3-clause |
alee156/clviz | clarityviz/analysis.py | 1 | 44461 | #!/usr/bin/env python
#-*- coding:utf-8 -*-
import matplotlib
from matplotlib import pyplot as plt
import numpy as np
from numpy import linalg as LA
import cv2
from skimage import exposure
import math
import os
import plotly
from plotly.graph_objs import *
from plotly.offline import download_plotlyjs, init_notebook_m... | apache-2.0 |
cbertinato/pandas | pandas/plotting/_matplotlib/core.py | 1 | 48588 | import re
from typing import Optional # noqa
import warnings
import numpy as np
from pandas._config import get_option
from pandas.errors import AbstractMethodError
from pandas.util._decorators import cache_readonly
from pandas.core.dtypes.common import (
is_hashable, is_integer, is_iterator, is_list_like, is_n... | bsd-3-clause |
openego/eTraGo | etrago/tools/io.py | 1 | 32726 | # -*- coding: utf-8 -*-
# Copyright 2016-2018 Flensburg University of Applied Sciences,
# Europa-Universität Flensburg,
# Centre for Sustainable Energy Systems,
# DLR-Institute for Networked Energy Systems
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU Affero G... | agpl-3.0 |
alexblaessle/PyFRAP | pyfrp/modules/pyfrp_img_module.py | 1 | 54981 | #=====================================================================================================================================
#Copyright
#=====================================================================================================================================
#Copyright (C) 2014 Alexander Blaessle... | gpl-3.0 |
bhermanmit/openmc | openmc/tallies.py | 1 | 136218 | from __future__ import division
from collections import Iterable, MutableSequence
import copy
import re
from functools import partial
import itertools
from numbers import Integral, Real
import warnings
from xml.etree import ElementTree as ET
from six import string_types
import numpy as np
import h5py
import openmc
i... | mit |
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