repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/reshape/test_pivot.py | 1 | 87636 | from collections import OrderedDict
from datetime import date, datetime, timedelta
from itertools import product
import numpy as np
import pytest
import pandas as pd
from pandas import (
Categorical,
DataFrame,
Grouper,
Index,
MultiIndex,
Series,
concat,
date_range,
)
from pandas.api.t... | apache-2.0 |
sanja7s/SR_Twitter | src_taxonomy/pie_plot_taxonomies_BigClam.py | 1 | 37407 | #!/usr/bin/env python
# -*- coding: UTF-8 -*-
'''
plot the pie plots of the top concepts, entities, taxonomies etc. per community and for the whole dataset
also output the stats for the top keywords, concepts, entities and for the sentiment per community (and the whole dataset)
'''
from __future__ import unicod... | mit |
Ademan/NumPy-GSoC | numpy/lib/function_base.py | 1 | 106250 | __docformat__ = "restructuredtext en"
__all__ = ['select', 'piecewise', 'trim_zeros',
'copy', 'iterable', 'percentile',
'diff', 'gradient', 'angle', 'unwrap', 'sort_complex', 'disp',
'extract', 'place', 'nansum', 'nanmax', 'nanargmax',
'nanargmin', 'nanmin', 'vectorize', 'asa... | bsd-3-clause |
fandaL/beso | beso_main.py | 1 | 37773 | # optimization program using CalculiX solver
# BESO (Bi-directional Evolutionary Structural Optimization Method)
import numpy as np
import matplotlib.pyplot as plt
import multiprocessing
import os
import subprocess
import sys
import time
import beso_lib
import beso_filters
import beso_plots
import beso_separate
# impo... | lgpl-3.0 |
StevenM1/flashtask | FlashSession.py | 1 | 89193 | #!/usr/bin/env python
# encoding: utf-8
from __future__ import division
from exp_tools import EyelinkSession
from psychopy import monitors, data, info, logging
from standard_parameters import *
from warnings import warn
import pylab
import pandas as pd
import os
import sys
from glob import glob
import cPickle as pickle... | mit |
jepegit/cellpy | dev_utils/ica_notebooks/fitting/icafit_old.py | 1 | 41478 | import os
import logging
import warnings
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
from cellpy import cellreader, log
from cellpy.utils import ica
from lmfit.models import (
GaussianModel,
PseudoVoigtModel,
ExponentialGaussianModel,
SkewedGaussianModel,
LorentzianModel... | mit |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/tests/groupby/test_function.py | 1 | 45365 | import builtins
from io import StringIO
from itertools import product
from string import ascii_lowercase
import numpy as np
import pytest
from pandas.errors import UnsupportedFunctionCall
import pandas as pd
from pandas import DataFrame, Index, MultiIndex, Series, Timestamp, date_range, isna
import pandas.core.nanop... | apache-2.0 |
amolkahat/pandas | pandas/tests/internals/test_internals.py | 1 | 48791 | # -*- coding: utf-8 -*-
# pylint: disable=W0102
from datetime import datetime, date
import operator
import sys
import pytest
import numpy as np
import re
from distutils.version import LooseVersion
import itertools
from pandas import (Index, MultiIndex, DataFrame, DatetimeIndex,
Series, Categorical... | bsd-3-clause |
gracecox/MagPy | magpysv/plots.py | 1 | 43109 | # -*- coding: utf-8 -*-
# Copyright (C) 2016 Grace Cox (University of Liverpool)
#
# Released under the MIT license, a copy of which is located at the root of
# this project.
"""Module containing plotting functions.
Part of the MagPySV package for geomagnetic data analysis. This module provides
various plott... | gpl-3.0 |
MizioAnd/HousePrices | house_prices.py | 1 | 58387 | # Predict the SalePrice
__author__ = 'mizio'
# import csv as csv
import numpy as np
import pandas as pd
# import matplotlib
# matplotlib.use('TkAgg')
import pylab as plt
from fancyimpute import MICE
# import sys
# sys.path.append('/custom/path/to/modules')
import random
# from sklearn.model_selection import cross_val_s... | gpl-3.0 |
dmitryduev/pypride | src/pypride/vintlib.py | 1 | 798425 | # -*- coding: utf-8 -*-
"""
A library containing a handful of useful functions.
Created on Wed Oct 2 16:23:02 2013
@author: Dr. Dmitry A. Duev
"""
from math import *
import numpy as np
import scipy as sp
#from scipy import interpolate
from scipy.interpolate import BarycentricInterpolator as bi
# import matplotlib.p... | gpl-2.0 |
lhillber/qops | qca.py | 1 | 40010 | N0 = 1
N1 = 278
N2 = 5736
N3 = 26752
N4 = 32786
import states as ss
import matrix as mx
import measures as ms
import h5py
import numpy as np
from mpi4py import MPI
import matplotlib as mpl
import matplotlib.pyplot as plt
from matplotlib.colors import LogNorm
from matplotlib.backends.backend_pdf import PdfPages
import o... | mit |
MaxStrange/ArtieInfant | Artie/experiment/thesis/phase1.py | 1 | 44802 | """
This is the phase 1 file.
This file's API consists simply of the function run(), which will run phase 1 of the thesis experiment.
"""
from experiment.analysis import ae # pylint: disable=locally-disabled, import-error
from experiment.analysis import production # pylint: disable=lo... | mit |
jorisvandenbossche/numpy | numpy/core/numeric.py | 1 | 71955 | from __future__ import division, absolute_import, print_function
import functools
import itertools
import operator
import sys
import warnings
import numbers
import contextlib
import numpy as np
from numpy.compat import pickle, basestring
from . import multiarray
from .multiarray import (
_fastCopyAndTranspose as ... | bsd-3-clause |
scizen9/kpy | SEDMrph/rcred.py | 1 | 46670 | # -*- coding: utf-8 -*-
"""
Created on Sun Jun 14 13:11:52 2015
@author: nadiablago
"""
import matplotlib
matplotlib.use('Agg')
import fitsutils
import os, glob, shutil, sys
import numpy as np
try:
from pyraf import iraf
from pyraf import IrafError
except:
pass
from astropy.io import fits
from astropy.w... | gpl-2.0 |
GuessWhoSamFoo/pandas | pandas/tests/indexes/test_numeric.py | 1 | 40845 | # -*- coding: utf-8 -*-
from datetime import datetime
import numpy as np
import pytest
from pandas._libs.tslibs import Timestamp
from pandas.compat import range
import pandas as pd
from pandas import Float64Index, Index, Int64Index, Series, UInt64Index
from pandas.tests.indexes.common import Base
import pandas.util... | bsd-3-clause |
yl565/statsmodels | statsmodels/tsa/statespace/varmax.py | 1 | 39389 | """
Vector Autoregressive Moving Average with eXogenous regressors model
Author: Chad Fulton
License: Simplified-BSD
"""
from __future__ import division, absolute_import, print_function
from warnings import warn
from statsmodels.compat.collections import OrderedDict
import pandas as pd
import numpy as np
from .kalma... | bsd-3-clause |
levic/isort | test_isort.py | 1 | 81012 | # coding: utf-8
"""test_isort.py.
Tests all major functionality of the isort library
Should be ran using py.test by simply running py.test in the isort project directory
Copyright (C) 2013 Timothy Edmund Crosley
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associ... | mit |
nbokulich/short-read-tax-assignment | tax_credit/tests/test_eval_framework.py | 1 | 79603 | #!/usr/bin/env python
# ----------------------------------------------------------------------------
# Copyright (c) 2014--, tax-credit development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# ---------------------... | bsd-3-clause |
bsipocz/astropy | astropy/convolution/tests/test_convolve.py | 1 | 40124 | # Licensed under a 3-clause BSD style license - see LICENSE.rst
import pytest
import numpy as np
import numpy.ma as ma
from astropy.convolution.convolve import convolve, convolve_fft
from astropy.convolution.kernels import Gaussian2DKernel
from astropy.utils.exceptions import AstropyUserWarning
from numpy.testing im... | bsd-3-clause |
amueller/word_cloud | wordcloud/wordcloud.py | 1 | 38213 | # coding=utf-8
# Author: Andreas Christian Mueller <t3kcit@gmail.com>
#
# (c) 2012
# Modified by: Paul Nechifor <paul@nechifor.net>
#
# License: MIT
from __future__ import division
import warnings
from random import Random
import io
import os
import re
import base64
import sys
import colorsys
import matplotlib
import... | mit |
gracecox/MagPy | magpysv/io.py | 1 | 32623 | # -*- coding: utf-8 -*-
# Copyright (C) 2016 Grace Cox (University of Liverpool)
#
# Released under the MIT license, a copy of which is located at the root of
# this project.
"""Module containing functions to parse World Data Centre (WDC) files.
Part of the MagPySV package for geomagnetic data analysis. This... | gpl-3.0 |
gregcaporaso/scikit-bio | skbio/metadata/_testing.py | 2 | 53266 | # ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file COPYING.txt, distributed with this software.
# --------------------------------------------... | bsd-3-clause |
jhamman/xarray | xarray/core/dataarray.py | 1 | 109033 | import functools
import warnings
from numbers import Number
from typing import (
TYPE_CHECKING,
Any,
Callable,
Dict,
Hashable,
Iterable,
List,
Mapping,
Optional,
Sequence,
Tuple,
TypeVar,
Union,
cast,
overload,
)
import numpy as np
import pandas as pd
from .... | apache-2.0 |
grimfang/panda3d | makepanda/makepanda.py | 1 | 337106 | #!/usr/bin/env python
########################################################################
#
# To build panda using this script, type 'makepanda.py' on unix
# or 'makepanda.bat' on windows, and examine the help-text.
# Then run the script again with the appropriate options to compile
# panda3d.
#
##################... | bsd-3-clause |
YuepengGuo/zipline | zipline/algorithm.py | 1 | 50333 | #
# Copyright 2014 Quantopian, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | apache-2.0 |
Garrett-R/scikit-learn | sklearn/ensemble/tests/test_gradient_boosting.py | 1 | 37352 | """
Testing for the gradient boosting module (sklearn.ensemble.gradient_boosting).
"""
import numpy as np
import warnings
from sklearn import datasets
from sklearn.base import clone
from sklearn.ensemble import GradientBoostingClassifier
from sklearn.ensemble import GradientBoostingRegressor
from sklearn.ensemble.gra... | bsd-3-clause |
ptkool/spark | python/pyspark/sql/dataframe.py | 2 | 89076 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
SiccarPoint/numpy | numpy/linalg/linalg.py | 1 | 75848 | """Lite version of scipy.linalg.
Notes
-----
This module is a lite version of the linalg.py module in SciPy which
contains high-level Python interface to the LAPACK library. The lite
version only accesses the following LAPACK functions: dgesv, zgesv,
dgeev, zgeev, dgesdd, zgesdd, dgelsd, zgelsd, dsyevd, zheevd, dgetr... | bsd-3-clause |
YuepengGuo/bt | bt/core.py | 1 | 38989 | """
Contains the core building blocks of the framework.
"""
from __future__ import division
import math
from copy import deepcopy
import pandas as pd
import numpy as np
import cython as cy
class Node(object):
"""
The Node is the main building block in bt's tree structure design.
Both StrategyBase and Se... | mit |
Kirubaharan/hydrology | cumulative_impact_of_check_dam/cum_impact_no_checkdam.py | 1 | 61733 | #!/usr/bin/env python
__author__ = 'kiruba'
""" This script is an attempt to model the cumulative impacts of check dam"""
import sys
# sys.path.append('../checkdam/')
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import itertools
import scipy as sp
import math
from datetime import datetime
impo... | gpl-3.0 |
jniediek/mne-python | mne/viz/raw.py | 3 | 41211 | """Functions to plot raw M/EEG data
"""
from __future__ import print_function
# Authors: Eric Larson <larson.eric.d@gmail.com>
# Jaakko Leppakangas <jaeilepp@student.jyu.fi>
#
# License: Simplified BSD
import copy
from functools import partial
import numpy as np
from ..externals.six import string_types
fro... | bsd-3-clause |
gem/oq-engine | openquake/calculators/views.py | 1 | 37759 | # -*- coding: utf-8 -*-
# vim: tabstop=4 shiftwidth=4 softtabstop=4
#
# Copyright (C) 2015-2021 GEM Foundation
#
# OpenQuake is free software: you can redistribute it and/or modify it
# under the terms of the GNU Affero General Public License as published
# by the Free Software Foundation, either version 3 of the Licen... | agpl-3.0 |
kamilien1/urbs | urbs.py | 1 | 59808 | """urbs: A linear optimisation model for distributed energy systems
urbs minimises total cost for providing energy in form of desired commodities
(usually electricity) to satisfy a given demand in form of timeseries. The
model contains commodities (electricity, fossil fuels, renewable energy
sources, greenhouse gases)... | gpl-3.0 |
ECP-CANDLE/Benchmarks | Pilot1/Combo/combo_baseline_keras2.py | 1 | 34562 | #! /usr/bin/env python
from __future__ import division, print_function
import argparse
import collections
import logging
import os
import random
import threading
import numpy as np
import pandas as pd
from itertools import cycle, islice
import keras
from keras import backend as K
from keras import optimizers
from ... | mit |
mikegraham/dask | dask/dataframe/tests/test_arithmetics_reduction.py | 1 | 33958 | from datetime import datetime
import numpy as np
import pandas as pd
from dask.utils import raises
import dask.dataframe as dd
from dask.dataframe.utils import eq, assert_dask_graph
def test_arithmetics():
dsk = {('x', 0): pd.DataFrame({'a': [1, 2, 3], 'b': [4, 5, 6]},
index=[0... | bsd-3-clause |
NeuralEnsemble/NeuroTools | src/signals/analogs.py | 1 | 43476 | """
NeuroTools.signals.analogs
==================
A collection of functions to create, manipulate and play with analog signals.
Classes
-------
AnalogSignal - object representing an analog signal, with its data. Can be used to do
threshold detection, event triggered averages, ...
AnalogSignalL... | gpl-2.0 |
CalebBell/thermo | thermo/property_package.py | 1 | 307956 | # -*- coding: utf-8 -*-
'''Chemical Engineering Design Library (ChEDL). Utilities for process modeling.
Copyright (C) 2017, 2018, 2019 Caleb Bell <Caleb.Andrew.Bell@gmail.com>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Softwa... | mit |
gaow/SEQPower | src/vat/tester.py | 1 | 124393 | #!/usr/bin/env python
#
# $File: tester.py $
# $LastChangedDate: 2012-06-05 12:31:19 -0500 (Tue, 05 Jun 2012) $
# $Rev: 1179 $
#
# This file is part of variant_tools, a software application to annotate,
# summarize, and filter variants for next-gen sequencing ananlysis.
# Please visit http://varianttools.sourceforge.ne... | gpl-2.0 |
AlanKuurstra/vidi3d | vidi3d/Compare/_MainWindowCompare.py | 1 | 35448 | """
Sets up the main window for the compare viewer. Creates MplImage, MplPlot,
and a ControlWidget objects and connects their Qt Signals to local functions.
"""
import matplotlib.animation as animation
import matplotlib.pyplot as plt
import numpy as np
from PyQt5 import QtCore, QtWidgets
from matplotlib import path
f... | gpl-3.0 |
e2crawfo/dps | dps/datasets/base.py | 1 | 64780 | import numpy as np
import inspect
import os
from tensorflow.python.util import deprecation
deprecation._PRINT_DEPRECATION_WARNINGS = False
import tensorflow as tf
import matplotlib as mpl
import matplotlib.pyplot as plt
import shutil
import time
import abc
from itertools import zip_longest
import dill
import itertools
... | apache-2.0 |
johnson1228/pymatgen | pymatgen/analysis/phase_diagram.py | 1 | 77867 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
from __future__ import division, unicode_literals
import re
import csv
import collections
import itertools
from io import open
import math
from six.moves import zip
import warnings
from monty.json import MSON... | mit |
synthicity/activitysim | scripts/verify_results.py | 1 | 30088 |
#############################################################
# ActivitySim verification against TM1
# Ben Stabler, ben.stabler@rsginc.com, 02/22/19
# C:\projects\activitysim\verification>python compare_results.py
#############################################################
import pandas as pd
import openmatrix as o... | agpl-3.0 |
HBNLdev/DataStore | db/eromat.py | 1 | 42344 | ''' representing and working with .mat's containing 3D ERO data '''
import os
import h5py
import numpy as np
import pandas as pd
from scipy import interpolate
from tqdm import tqdm
import db.database as D
from .cnth1_to_stmat import build_paramstr
from .compilation import join_collection
from .stmat_to_... | gpl-3.0 |
andyh616/mne-python | mne/viz/topomap.py | 1 | 64546 | """Functions to plot M/EEG data e.g. topographies
"""
from __future__ import print_function
# Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Denis Engemann <denis.engemann@gmail.com>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Eric Larson <larson.eric.d@gmail.com... | bsd-3-clause |
jseabold/statsmodels | statsmodels/tsa/statespace/tests/test_simulate.py | 5 | 71428 | """
Tests for simulation of time series
Author: Chad Fulton
License: Simplified-BSD
"""
import numpy as np
import pandas as pd
from numpy.testing import assert_, assert_allclose, assert_equal
import pytest
from scipy.signal import lfilter
from .test_impulse_responses import TVSS
from statsmodels.tools.sm_exceptions ... | bsd-3-clause |
lkilcommons/atmodexplorer | atmodexplorer/atmodexplorer.py | 1 | 41802 | import sys
import os
import random
from matplotlib.backends import backend_qt4
import matplotlib.widgets as widgets
import matplotlib.axes
from PyQt4 import QtGui, QtCore, Qt
from PyQt4.QtCore import SIGNAL,SLOT,pyqtSlot,pyqtSignal
#Main imports
import numpy as np
#import pandas as pd
import sys, pdb, textwrap
import... | gpl-3.0 |
gregreen/bayestar | scripts/compareSEGUE.py | 1 | 34680 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# compareSEGUE.py
#
# Copyright 2013 Greg Green <greg@greg-UX31A>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of t... | gpl-2.0 |
openego/ego.powerflow | egopowerflow/tools/io.py | 1 | 32851 | """ io.py
Input/output operations between powerflow schema in the oedb and PyPSA.
Additionally oedb wrapper classes to instantiate PyPSA network objects.
Attributes
----------
packagename: str
Package containing orm class definitions
temp_ormclass: str
Orm class name of table with temporal resolution
carr_o... | agpl-3.0 |
TomAugspurger/pandas | pandas/tests/io/parser/test_parse_dates.py | 1 | 46157 | """
Tests date parsing functionality for all of the
parsers defined in parsers.py
"""
from datetime import date, datetime
from io import StringIO
from dateutil.parser import parse as du_parse
from hypothesis import given, settings, strategies as st
import numpy as np
import pytest
import pytz
from pandas._libs.tslib... | bsd-3-clause |
bokeh/bokeh | bokeh/models/sources.py | 1 | 31097 | #-----------------------------------------------------------------------------
# Copyright (c) 2012 - 2021, Anaconda, Inc., and Bokeh Contributors.
# All rights reserved.
#
# The full license is in the file LICENSE.txt, distributed with this software.
#-------------------------------------------------------------------... | bsd-3-clause |
umich-brcf-bioinf/GeneRollup | test/rollup_test.py | 1 | 58914 | #pylint: disable=line-too-long, too-many-public-methods, invalid-name
#pylint: disable=maybe-no-member, too-few-public-methods, no-member
from __future__ import absolute_import
from argparse import Namespace
from collections import OrderedDict
import filecmp
from io import StringIO
import os
import unittest
import nu... | apache-2.0 |
cdd1969/pygwa | lib/functions/detectpeaks.py | 1 | 57189 | #!/usr/bin python
# -*- coding: utf-8 -*-
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from datetime import timedelta
from datetime import datetime as dtime
from scipy import signal
from general import isNumpyDatetime
import logging
from python_log_indenter import IndentedLoggerAdapter
log... | gpl-2.0 |
dsm054/pandas | pandas/tests/series/test_constructors.py | 1 | 44925 | # coding=utf-8
# pylint: disable-msg=E1101,W0612
from collections import OrderedDict
from datetime import datetime, timedelta
import numpy as np
from numpy import nan
import numpy.ma as ma
import pytest
from pandas._libs import lib
from pandas._libs.tslib import iNaT
from pandas.compat import PY36, long, lrange, ran... | bsd-3-clause |
thombashi/pytablewriter | test/writer/text/test_markdown_writer.py | 1 | 45399 | """
.. codeauthor:: Tsuyoshi Hombashi <tsuyoshi.hombashi@gmail.com>
"""
import collections
import io
from textwrap import dedent
from typing import Optional
import pytest
from tabledata import TableData
from tcolorpy import tcolor
import pytablewriter as ptw
from pytablewriter.style import Align, Cell, FontSize, Sty... | mit |
srouchier/hamopy | hamopy/classes.py | 1 | 45036 | # Copyright (C) 2014 Simon Rouchier
#
# This file is part of Hamopy.
#
# Hamopy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# H... | lgpl-3.0 |
charlyoleg/Cnc25D | cnc25d/display_backend.py | 1 | 38563 | # display_backend.py
# -*- coding: utf-8 -*-
# creates and displays the two Tkinter Canvas windows used by outline_backends.py
# created by charlyoleg on 2013/07/11
#
# (C) Copyright 2013 charlyoleg
#
# This file is part of the Cnc25D Python package.
#
# Cnc25D is free software: you can redistribute it and/or modify
... | gpl-3.0 |
zack3241/incubator-airflow | airflow/www/views.py | 1 | 99411 | # -*- coding: utf-8 -*-
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
... | apache-2.0 |
LumPenPacK/NetworkExtractionFromImages | osx_build/nefi2_osx_amd64_xcode_2015/site-packages/numpy_1.11/numpy/core/tests/test_multiarray.py | 1 | 237554 | from __future__ import division, absolute_import, print_function
import collections
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import ctypes
import os
if sys.version_info[0] >= 3:
import builtins
else:
import __builtin__ as builtins
from decimal import D... | bsd-2-clause |
heathsc/gemBS | gemBS/bsCallStats.py | 1 | 63878 | # -*- coding: utf-8 -*-
"""
Created on Wed Nov 29 15:35:46 2017
@author: marcos
"""
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.pylab as pylab
import numpy as np
import os
import math
class StatsMother:
"""Common methods to all type of class stats"""
def ... | gpl-3.0 |
credp/lisa | lisa/trace.py | 1 | 191630 | # SPDX-License-Identifier: Apache-2.0
#
# Copyright (C) 2015, ARM Limited and contributors.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# ... | apache-2.0 |
materialsproject/pymatgen | pymatgen/io/lammps/data.py | 1 | 60296 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module implements a core class LammpsData for generating/parsing
LAMMPS data file, and other bridging classes to build LammpsData from
molecules. This module also implements a subclass CombinedData for... | mit |
girving/tensorflow | tensorflow/python/estimator/canned/linear_testing_utils.py | 1 | 90643 | # Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | apache-2.0 |
thalesians/tsa | src/test/python/thalesians/tsa/testtsa.py | 1 | 48194 | import unittest
import numpy as np
import pandas as pd
from pandas.util.testing import assert_frame_equal
import thalesians.tsa.tsa as tsa
class TestTSA(unittest.TestCase):
def test_data_set(self):
df = pd.DataFrame({
'col1': [10., 20., 30., 40., 50., 60., 70., 80., 90., 100., 110., 120., 130... | apache-2.0 |
venthur/wyrm | wyrm/plot.py | 1 | 35940 | #!/usr/bin/env python
"""Plotting methods.
This module contains various plotting methods. There are two types of
plotting methods: the Primitives and the Composites. The Primitives are
the most basic and offer simple, single-plot representations. The
Composites are composed of several primitives and offer more comple... | mit |
317070/kaggle-heart | util_scripts/segmentation_labelling.py | 1 | 34815 | import cPickle as pickle
from scipy.special import erf
import glob
import os
import matplotlib.pyplot as plt
from matplotlib import animation
import numpy as np
from skimage.feature import register_translation
import matplotlib.pyplot as plt
import scipy.stats
import numpy as np
from scipy.fftpack import fftn, ifftn
f... | mit |
ekostat/ekostat_calculator | .ipynb_checkpoints/event_handler-checkpoint.py | 1 | 73272 | # -*- coding: utf-8 -*-
"""
Created on Wed Jan 31 15:05:36 2018
@author: a001985
"""
import os
import shutil
import json
import codecs
import logging
import importlib
# TODO: Move this!
#current_path = os.path.dirname(os.path.dirname(os.path.dirname(os.path.realpath(__file__))))
#current_path = os.path.dirname(os... | mit |
ProjectPyRhO/PyRhO | pyrho/fitting.py | 1 | 84236 | """Rhodopsin model fitting and optimising routines"""
from __future__ import print_function, division
import os
import pickle
import warnings
import logging
import copy
import numpy as np
import matplotlib as mpl
import matplotlib.pyplot as plt
from lmfit import minimize, Parameters, fit_report, Model
from scipy.opti... | bsd-3-clause |
anhaidgroup/py_entitymatching | py_entitymatching/dask/dask_overlap_blocker.py | 1 | 37755 | import collections
import dask
from dask import delayed
from dask.diagnostics import ProgressBar
import logging
import multiprocessing
import pandas as pd
import numpy as np
import re
import six
import string
import py_stringsimjoin as ssj
from py_stringsimjoin.filter.overlap_filter import OverlapFilter
from py_string... | bsd-3-clause |
MJuddBooth/pandas | pandas/tests/frame/test_combine_concat.py | 1 | 34024 | # -*- coding: utf-8 -*-
from __future__ import print_function
from datetime import datetime
import numpy as np
import pytest
from pandas.compat import lrange
import pandas as pd
from pandas import DataFrame, Index, Series, Timestamp, date_range
from pandas.tests.frame.common import TestData
import pandas.util.test... | bsd-3-clause |
camisatx/pySecMaster | pySecMaster/extractor.py | 1 | 77466 | import csv
from datetime import datetime, timedelta, timezone
import pandas as pd
import psycopg2
#import re
from sqlalchemy import create_engine
import time
from download import QuandlDownload, download_google_data, \
download_yahoo_data, download_csidata_factsheet,\
download_nasdaq_industry_sector
from utili... | agpl-3.0 |
Stuermer/EchelleSimulator | examples/model_creation/PyEchelle.py | 1 | 49658 | import tables
from matplotlib import patches
import matplotlib.mlab as ml
from mpl_toolkits.axes_grid1 import make_axes_locatable
import numpy as np
import pickle as pickle
import os
from scipy import interpolate
import matplotlib.pyplot as plt
from PIL import Image
import astropy.io.fits as pyfits
from sc... | gpl-3.0 |
jbernhard/qm2017 | qm/plots.py | 1 | 33231 | """ plots / visualizations / figures """
import colorsys
import itertools
import logging
from pathlib import Path
import subprocess
import tempfile
import warnings
import h5py
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import lines
from matplotlib import patches
from matplotlib import ticker
f... | mit |
cdemulde/wwdata | wwdata/Class_OnlineSensorBased.py | 1 | 67549 | """
Class_OnlineSensorBased provides functionalities for data handling of data obtained with online sensors in the field of (waste)water treatment.
Copyright (C) 2016 Chaim De Mulder
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as publ... | agpl-3.0 |
BryanCutler/spark | python/pyspark/pandas/tests/test_series.py | 1 | 120972 | #
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not us... | apache-2.0 |
CGATOxford/CGATPipelines | obsolete/PipelineRrbs.py | 1 | 77723 | '''
PipelineRrbs.py - Utility functions for analysing rrbs sequence data
=====================================================================
'''
import os
import re
import sqlite3
import itertools
import copy
import CGATPipelines.Pipeline as P
import CGAT.Experiment as E
import CGAT.IOTools as IOTools
import CGAT.Fas... | mit |
rs2/pandas | pandas/core/internals/blocks.py | 1 | 97137 | from datetime import datetime, timedelta
import inspect
import re
from typing import TYPE_CHECKING, Any, List, Optional
import warnings
import numpy as np
from pandas._libs import NaT, algos as libalgos, lib, writers
import pandas._libs.internals as libinternals
from pandas._libs.internals import BlockPlacement
from ... | bsd-3-clause |
summychou/TBTracker | src/TBTracker_MainWindow_bk.py | 1 | 51077 | # -*- coding: utf-8 -*-
import warnings
warnings.filterwarnings('ignore')
# ********************第三方相关模块导入********************
import logging
Logger = logging.getLogger("TBTracker")
Logger.setLevel(logging.DEBUG)
InfoHandler = logging.FileHandler("TBTracker_Log/info.log")
InfoHandler.setLevel(logging.INFO)
INFOFORMATT... | mit |
leschzinerlab/FreeHand | freeHand_spiderAPSH.py | 1 | 37718 | #!/usr/bin/env python
import optparse
from sys import *
import os,sys,re
from optparse import OptionParser
import glob
import subprocess
from os import system
import linecache
import numpy as np
import matplotlib.pyplot as plt
import Image
import pylab
from matplotlib.ticker import MultipleLocator, FormatStrFormatter... | mit |
ArteliaTelemac/PostTelemac | PostTelemac/meshlayerdialogs/posttelemacpropertiesdialog.py | 1 | 54301 | # -*- coding: utf-8 -*-
"""
/***************************************************************************
PostTelemac
A QGIS plugin
Post Traitment or Telemac
-------------------
begin : 2015-07-07
git sha : $For... | gpl-3.0 |
toobaz/pandas | pandas/core/resample.py | 1 | 56452 | import copy
from datetime import timedelta
from textwrap import dedent
from typing import Dict, no_type_check
import warnings
import numpy as np
from pandas._libs import lib
from pandas._libs.tslibs import NaT, Period, Timestamp
from pandas._libs.tslibs.frequencies import is_subperiod, is_superperiod
from pandas._lib... | bsd-3-clause |
dnjohnstone/hyperspy | hyperspy/signal_tools.py | 1 | 67918 | # -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
akpetty/ibtopo2016 | IB_functions.py | 1 | 33964 | ##############################################################
# Date: 10/05/16
# Name: Alek Petty
# Description: Functions called by the various ibtopo Python scripts
# Extra: May not need all these libraries, so check before using if having issues.
from osgeo import osr, gdal
import numpy as np
from pyproj import P... | gpl-3.0 |
caganze/splat | splat/empirical.py | 1 | 73057 | # -*- coding: utf-8 -*-
from __future__ import print_function, division
"""
.. note::
These are the empirical relations functions for SPLAT
"""
# imports: internal
import copy
import sys
# imports - external
import numpy
from astropy import units as u # standard units
#from astropy import const... | mit |
INM-6/viziphant | viziphant/gpfa.py | 1 | 41203 | """
Gaussian Process Factor Analysis (GPFA) plots
---------------------------------------------
Visualizes transformed trajectories output from
:class:`elephant.gpfa.gpfa.GPFA`
.. autosummary::
:toctree: toctree/gpfa/
plot_dimensions_vs_time
plot_trajectories
plot_trajectories_spikeplay
plot_cumu... | bsd-3-clause |
yavalvas/yav_com | build/matplotlib/lib/matplotlib/axis.py | 1 | 80110 | """
Classes for the ticks and x and y axis
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from matplotlib import rcParams
import matplotlib.artist as artist
from matplotlib.artist import allow_rasterization
import matplotlib.cbook as cbook
i... | mit |
jluscher/SCANIT | scanit_v035.py | 1 | 92792 | #! /usr/bin/env python3
#
# SCANIT - Control A spectrometer and collect data
#
# LICENSE:
# This work is licensed under the Creative Commons Attribution-ShareAlike
# 3.0 United States License. To view a copy of this license, visit
# http://creativecommons.org/licenses/by-sa/3.0/us/
# or send a letter to:
# Creative Com... | cc0-1.0 |
esteinig/netviewP | program/linux/0.7.1/netview.py | 1 | 37588 | #!/usr/bin/env python
# NetView P v.0.7.1
# Dependencies: PLINK
# Eike Steinig
# Zenger Lab, JCU
# https://github.com/esteinig/netview
import os
import time
import json
import shutil
import argparse
import subprocess
import numpy as np
import multiprocessing as mp
import scipy.sparse.csgraph as csg
import scipy.spatia... | gpl-2.0 |
dwettstein/pattern-recognition-2016 | mlp/model_selection/kernels.py | 1 | 66352 | """Kernels for Gaussian process regression and classification.
The kernels in this module allow kernel-engineering, i.e., they can be
combined via the "+" and "*" operators or be exponentiated with a scalar
via "**". These sum and product expressions can also contain scalar values,
which are automatically converted to... | mit |
abhmul/PyJet | pyjet/single_script.py | 1 | 119271 | # Python standard library modules
import copy
import os
import logging
import threading
import time
import queue
from collections import deque
import warnings
import itertools
from functools import partial
# Third party libraries
import numpy as np
from tqdm import tqdm
try:
import matplotlib
import matplotlib... | mit |
RPGOne/Skynet | scikit-learn-c604ac39ad0e5b066d964df3e8f31ba7ebda1e0e/sklearn/gaussian_process/gaussian_process.py | 1 | 34397 | # -*- coding: utf-8 -*-
# Author: Vincent Dubourg <vincent.dubourg@gmail.com>
# (mostly translation, see implementation details)
# Licence: BSD 3 clause
from __future__ import print_function
import numpy as np
from scipy import linalg, optimize
from ..base import BaseEstimator, RegressorMixin
from ..metrics... | bsd-3-clause |
cpcloud/ibis | ibis/expr/tests/test_value_exprs.py | 1 | 42953 | import functools
import operator
import os
from collections import OrderedDict
from datetime import date, datetime, time
from operator import methodcaller
import numpy as np
import pandas as pd
import pytest
import toolz
import ibis
import ibis.common.exceptions as com
import ibis.expr.analysis as L
import ibis.expr.... | apache-2.0 |
zerothi/sisl | sisl/supercell.py | 1 | 37862 | # This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at https://mozilla.org/MPL/2.0/.
""" Define a supercell
This class is the basis of many different objects.
"""
import math
import warnings
from numbers... | lgpl-3.0 |
dssg/diogenes | diogenes/grid_search/experiment.py | 1 | 38981 | """Provides classes necessary for organizing an Experiment"""
import inspect
import json
import copy
import abc
import datetime
import csv
import os
import itertools as it
from collections import Counter
from multiprocessing import cpu_count
import warnings
import numpy as np
from joblib import Parallel, delayed
fr... | mit |
DIYElectronicsZA/PSU.T-Power_Supply_Unicorn_Tamer- | software/graph_plotting.py | 1 | 36731 | from __future__ import print_function
import wx
import serial
import os
from wx.lib.plot import PolyLine, PlotCanvas, PlotGraphics
import wx.grid as grid
import io
import logging
import sys
import glob
import numpy as np
import csv
#import matplotlib.py as plt
from serialfunctions import SerialPort
im... | gpl-3.0 |
datapythonista/pandas | pandas/core/indexes/multi.py | 1 | 133622 | from __future__ import annotations
from functools import wraps
from sys import getsizeof
from typing import (
TYPE_CHECKING,
Any,
Callable,
Collection,
Hashable,
Iterable,
List,
Sequence,
Tuple,
cast,
)
import warnings
import numpy as np
from pandas._config import get_option
... | bsd-3-clause |
Eric89GXL/scipy | scipy/spatial/kdtree.py | 3 | 38090 | # Copyright Anne M. Archibald 2008
# Released under the scipy license
from __future__ import division, print_function, absolute_import
import sys
import numpy as np
from heapq import heappush, heappop
import scipy.sparse
__all__ = ['minkowski_distance_p', 'minkowski_distance',
'distance_matrix',
... | bsd-3-clause |
geophysics/mtpy | mtpy/imaging/plotptpseudosection.py | 1 | 59761 | # -*- coding: utf-8 -*-
"""
Created on Thu May 30 18:10:55 2013
@author: jpeacock-pr
"""
#==============================================================================
import matplotlib.pyplot as plt
import numpy as np
import os
import matplotlib.colors as colors
import matplotlib.patches as patches
import matplotl... | gpl-3.0 |
tomasjames/citsciportal | app/showmestars/views.py | 1 | 260502 | '''
Citizen Science Portal: App containing Agent Exoplant and Show Me Stars for Las Cumbres Observatory Global Telescope Network
Copyright (C) 2014-2015 LCOGT
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foun... | gpl-3.0 |
cmunk/protwis | build/management/commands/build_g_proteins.py | 1 | 51519 | from django.core.management.base import BaseCommand, CommandError
from django.conf import settings
from django.db import connection
from django.db import IntegrityError
from common.models import WebResource, WebLink, Publication
from protein.models import (Protein, ProteinGProtein,ProteinGProteinPair, ProteinConform... | apache-2.0 |
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