repo_name string | path string | copies string | size string | content string | license string |
|---|---|---|---|---|---|
tkchafin/mrbait | mrbait/mrbait_corefuncs.py | 1 | 55778 | #!/usr/bin/python
import sys
import sqlite3
import getopt
import Bio
import os
import time
from Bio import AlignIO
from decimal import *
from mrbait import mrbait_menu
from mrbait import substring
from mrbait.substring import SubString
from mrbait import manage_bait_db as m
from mrbait import alignment_tools as a
from ... | gpl-3.0 |
materialsproject/pymatgen | pymatgen/electronic_structure/boltztrap2.py | 1 | 47315 | """
BoltzTraP2 is a python software interpolating band structures and
computing materials properties from dft band structure using Boltzmann
semi-classical transport theory.
This module provides a pymatgen interface to BoltzTraP2.
Some of the code is written following the examples provided in BoltzTraP2
BoltzTraP2 has... | mit |
TomAugspurger/pandas | pandas/core/groupby/generic.py | 1 | 67211 | """
Define the SeriesGroupBy and DataFrameGroupBy
classes that hold the groupby interfaces (and some implementations).
These are user facing as the result of the ``df.groupby(...)`` operations,
which here returns a DataFrameGroupBy object.
"""
from collections import abc, namedtuple
import copy
from functools import p... | bsd-3-clause |
ryfeus/lambda-packs | Tensorflow_Pandas_Numpy/source3.6/pandas/core/algorithms.py | 1 | 60393 | """
Generic data algorithms. This module is experimental at the moment and not
intended for public consumption
"""
from __future__ import division
from warnings import warn, catch_warnings
from textwrap import dedent
import numpy as np
from pandas.core.dtypes.cast import (
maybe_promote, construct_1d_object_array... | mit |
matthew-tucker/mne-python | mne/label.py | 1 | 73661 | # Authors: Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Martin Luessi <mluessi@nmr.mgh.harvard.edu>
# Denis Engemann <denis.engemann@gmail.com>
#
# License: BSD (3-clause)
from collections import defaultdict
from colorsys import hsv_to_rgb, rgb_to_hsv
from os import path as op
impor... | bsd-3-clause |
rop14009/Repeat-analysis-pipeline | repeatpipeline.py | 1 | 137699 | from __future__ import division
from collections import Counter
from os import system
from scipy import stats
import operator
import csv
import re
import sys
from Bio import SeqIO ## Try to change this
import os
import commands
import numpy as np
import argparse
import linecache
import random
import datetime
import ti... | gpl-3.0 |
jhamman/xray | xarray/conventions.py | 1 | 41624 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from datetime import datetime
import re
import traceback
import warnings
import numpy as np
import pandas as pd
from collections import defaultdict
try:
from pandas.errors import OutOfBoundsDatetime
except ... | apache-2.0 |
merenlab/anvio | anvio/taxonomyops/scg.py | 1 | 70338 | #!/usr/bin/env python3
# -*- coding: utf-8
"""
Classes to setup remote SCG databases in local, use local databases to affiliate SCGs in anvi'o
contigs databases with taxon names, and estimate taxonomy for genomes and metagneomes.
"""
import os
import glob
import copy
import shutil
import pandas as pd
import scipy.spar... | gpl-3.0 |
lizardsystem/freq | freq/views.py | 1 | 48412 | # (c) Nelen & Schuurmans. GPL licensed, see LICENSE.rst.
# -*- coding: utf-8 -*-
import copy
import csv
import datetime
import json
import logging
import re
from django.utils.functional import cached_property
from django.utils.text import slugify
from django.views.generic.base import TemplateView
from django.http imp... | gpl-3.0 |
gfyoung/pandas | pandas/core/indexes/base.py | 1 | 204075 | from __future__ import annotations
from copy import copy as copy_func
from datetime import datetime
from itertools import zip_longest
import operator
from typing import (
TYPE_CHECKING,
Any,
Callable,
Dict,
FrozenSet,
Hashable,
List,
NewType,
Optional,
Sequence,
Set,
Tup... | bsd-3-clause |
GuessWhoSamFoo/pandas | pandas/core/arrays/base.py | 1 | 38965 | """An interface for extending pandas with custom arrays.
.. warning::
This is an experimental API and subject to breaking changes
without warning.
"""
import operator
import numpy as np
from pandas.compat import PY3, set_function_name
from pandas.compat.numpy import function as nv
from pandas.errors import Ab... | bsd-3-clause |
thomasyu888/Genie | genie/clinical.py | 1 | 30660 | import datetime
import os
import logging
import subprocess
import yaml
import pandas as pd
import synapseclient
from .example_filetype_format import FileTypeFormat
from . import process_functions
from .database_to_staging import redact_phi
logger = logging.getLogger(__name__)
def remove_greaterthan_lessthan_str(co... | mit |
radosuav/pyTSEB | pyTSEB/PyTSEB.py | 1 | 66816 | # This file is part PyTSEB, consisting of of high level pyTSEB scripting
# Copyright 2016 Hector Nieto and contributors listed in the README.md file.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software... | gpl-3.0 |
airbnb/caravel | superset/connectors/sqla/models.py | 1 | 36816 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
microsoft/LightGBM | python-package/lightgbm/sklearn.py | 1 | 51035 | # coding: utf-8
"""Scikit-learn wrapper interface for LightGBM."""
import copy
from inspect import signature
from typing import Callable, Dict, Optional, Union
import numpy as np
from .basic import Dataset, LightGBMError, _choose_param_value, _ConfigAliases, _log_warning
from .compat import (SKLEARN_INSTALLED, LGBMNo... | mit |
shoyer/numpy | numpy/lib/function_base.py | 1 | 156225 | from __future__ import division, absolute_import, print_function
try:
# Accessing collections abstact classes from collections
# has been deprecated since Python 3.3
import collections.abc as collections_abc
except ImportError:
import collections as collections_abc
import functools
import re
import sys... | bsd-3-clause |
GaloMALDONADO/motorg | motorog/example.py | 1 | 48438 | import pinocchio as se3
import numpy as np
import paths as lp
import robot_config as rconf
import mocap_config as mconf
from hqp.wrapper import Wrapper
from trajectory_extractor import References
import ucm
import plot_tools
import csv
import indexes
import plotTasks
from hqp.viewer_utils import Viewer
coordinateNam... | gpl-3.0 |
Eric89GXL/scipy | scipy/signal/ltisys.py | 1 | 123826 | """
ltisys -- a collection of classes and functions for modeling linear
time invariant systems.
"""
from __future__ import division, print_function, absolute_import
#
# Author: Travis Oliphant 2001
#
# Feb 2010: Warren Weckesser
# Rewrote lsim2 and added impulse2.
# Apr 2011: Jeffrey Armstrong <jeff@approximatrix.co... | bsd-3-clause |
inertialsense/InertialSenseSDK | python/pylib/ISToolsPlot.py | 1 | 75034 | import numpy as np
import os
# import sys
import simplekml
# import pdb
import pylib.pose as ps
import pylib.ISToolsDataSorted as itd
import pylib.filterTools as ft
import pylib.plotTools as plotTools
import matplotlib.pyplot as plt
import matplotlib
import datetime
import time as systime
from pylib.ISToolsDataSorted... | mit |
PourroyJean/performance_modelisation | script/data visualisation/top500Sum.py | 1 | 55819 |
list = {
1993 : [0.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.... | gpl-3.0 |
ijmarshall/cochrane-nlp | bilearn_supervised.py | 1 | 47829 | #
# version 2 of bilearner
#
#
# requires numpy, sklearn
#
#
import cPickle as pickle
import cPickle as pickle
from collections import defaultdict
import logging
import math
from pprint import pprint
import re
import biviewer
from indexnumbers import swap_num
import numpy as np
import pipeline
import progressbar
fro... | gpl-3.0 |
52North/IlwisCore | pythonapi/test.py | 1 | 104540 | #!/usr/bin python
# -*- coding: utf-8 -*-
from concurrent.futures.process import _WorkItem
from unittest.case import skip
try:
from ilwis import *
from datetime import *
from math import *
import gc
workingDir = "file:///E:/pytest"
babyDir = "/baby"
exampleDir = "/example"
worldDir = "... | gpl-3.0 |
walshjon/openmc | openmc/tallies.py | 1 | 128378 | from collections.abc import Iterable, MutableSequence
import copy
import re
from functools import partial, reduce
from itertools import product
from numbers import Integral, Real
import operator
import warnings
from xml.etree import ElementTree as ET
import numpy as np
import pandas as pd
import scipy.sparse as sps
im... | mit |
jahuth/convis | convis/models.py | 1 | 35170 | """
Convis Models
--------------
These models are ready to run.
"""
from __future__ import print_function
import numpy as np
import uuid
from torch import nn
import torch
from .base import Layer
from .filters import Conv1d, Conv2d, Conv3d, TIME_DIMENSION, Delay, VariableDelay
from . import variables, filters
from .... | gpl-3.0 |
altair-viz/altair | altair/vegalite/v3/schema/channels.py | 1 | 262851 | # The contents of this file are automatically written by
# tools/generate_schema_wrapper.py. Do not modify directly.
from . import core
import pandas as pd
from altair.utils.schemapi import Undefined
from altair.utils import parse_shorthand
class FieldChannelMixin(object):
def to_dict(self, validate=True, ignore... | bsd-3-clause |
alperyeg/elephant | elephant/spike_train_correlation.py | 1 | 40876 | # -*- coding: utf-8 -*-
"""
This modules provides functions to calculate correlations between spike trains.
:copyright: Copyright 2015-2016 by the Elephant team, see `doc/authors.rst`.
:license: Modified BSD, see LICENSE.txt for details.
"""
from __future__ import division, print_function, unicode_literals
import war... | bsd-3-clause |
sahilTakiar/spark | python/pyspark/sql/tests.py | 1 | 276859 | # -*- encoding: utf-8 -*-
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the ... | apache-2.0 |
weixuanfu2016/tpot | tests/tpot_tests.py | 1 | 81680 | # -*- coding: utf-8 -*-
"""This file is part of the TPOT library.
TPOT was primarily developed at the University of Pennsylvania by:
- Randal S. Olson (rso@randalolson.com)
- Weixuan Fu (weixuanf@upenn.edu)
- Daniel Angell (dpa34@drexel.edu)
- and many more generous open source contributors
TPOT is f... | lgpl-3.0 |
lmcinnes/umap | umap/plot.py | 1 | 54085 | import numpy as np
import numba
from warnings import warn
try:
import pandas as pd
import datashader as ds
import datashader.transfer_functions as tf
import datashader.bundling as bd
import matplotlib.pyplot as plt
import colorcet
import matplotlib.colors
import matplotlib.cm
impor... | bsd-3-clause |
cdfassnacht/CodeCDF | python/ccdredux_old.py | 1 | 100958 | """
ccdredux.py - A library of functions to do various basic CCD image processing
operations
High-level Functions:
make_bias - combines input bias or dark frames into one master file
make_flat - combines input flat frames into a master flat
make_flat_files - exactly like make_f... | mit |
anhaidgroup/py_entitymatching | py_entitymatching/catalog/catalog_manager.py | 1 | 52929 | # coding=utf-8
"""
This module contains wrapper functions for the catalog.
"""
import logging
import pandas as pd
import six
import py_entitymatching.utils.catalog_helper as ch
from py_entitymatching.catalog.catalog import Catalog
from py_entitymatching.utils.validation_helper import validate_object_type
logger = lo... | bsd-3-clause |
toobaz/pandas | pandas/core/arrays/datetimelike.py | 1 | 56013 | from datetime import datetime, timedelta
import operator
from typing import Any, Sequence, Type, Union, cast
import warnings
import numpy as np
from pandas._libs import NaT, NaTType, Timestamp, algos, iNaT, lib
from pandas._libs.tslibs.c_timestamp import maybe_integer_op_deprecated
from pandas._libs.tslibs.period imp... | bsd-3-clause |
manns/pyspread | pyspread/actions.py | 1 | 43582 | # -*- coding: utf-8 -*-
# Copyright Martin Manns
# Distributed under the terms of the GNU General Public License
# --------------------------------------------------------------------
# pyspread is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published... | gpl-3.0 |
cython-testbed/pandas | pandas/core/dtypes/common.py | 1 | 55010 | """ common type operations """
import numpy as np
from pandas.compat import (string_types, text_type, binary_type,
PY3, PY36)
from pandas._libs import algos, lib
from pandas._libs.tslibs import conversion, Period, Timestamp
from pandas._libs.interval import Interval
from pandas.core.dtypes.... | bsd-3-clause |
siboles/pyCellAnalyst | src/pyCellAnalyst/FEA_GUI.py | 1 | 45621 | from __future__ import print_function
from __future__ import division
from builtins import zip
from builtins import map
from builtins import str
from builtins import range
from past.utils import old_div
import febio
import pickle
import subprocess
import os
import tkinter.filedialog
import platform
import fnmatch
impor... | mit |
jk1/intellij-community | python/helpers/pydev/pydevd.py | 1 | 68941 | '''
Entry point module (keep at root):
This module starts the debugger.
'''
import sys
if sys.version_info[:2] < (2, 6):
raise RuntimeError('The PyDev.Debugger requires Python 2.6 onwards to be run. If you need to use an older Python version, use an older version of the debugger.')
import atexit
import os
import... | apache-2.0 |
DGrady/pandas | pandas/core/indexes/interval.py | 1 | 35429 | """ define the IntervalIndex """
import numpy as np
from pandas.core.dtypes.missing import notna, isna
from pandas.core.dtypes.generic import ABCPeriodIndex
from pandas.core.dtypes.dtypes import IntervalDtype
from pandas.core.dtypes.common import (
_ensure_platform_int,
is_list_like,
is_datetime_or_timede... | bsd-3-clause |
bert9bert/statsmodels | statsmodels/imputation/mice.py | 2 | 45391 | """
Overview
--------
This module implements the Multiple Imputation through Chained
Equations (MICE) approach to handling missing data in statistical data
analyses. The approach has the following steps:
0. Impute each missing value with the mean of the observed values of
the same variable.
1. For each variable in t... | bsd-3-clause |
majkelx/astwro | astwro/tools/gapick.py | 1 | 41097 | #! /usr/bin/env python
# coding=utf-8
""" Find best PSF stars using GA to minimize mean error.
.. seealso:: :ref:`gapick`
"""
from __future__ import absolute_import, division, print_function
__metaclass__ = type
# For now:
# TODO: --neigbours option: once for generation neightbour removal
# TODO: --timestamp: add... | mit |
puruckertom/ubertool | ubertool/ted/tests/test_ted_unittest.py | 1 | 313726 | from __future__ import division # brings in Python 3.0 mixed type calculation rules
import datetime
import inspect
import numpy as np
import numpy.testing as npt
import os.path
import pandas as pd
import sys
from tabulate import tabulate
import unittest
print("Python version: " + sys.version)
print("Numpy version: " ... | unlicense |
Becksteinlab/GromacsWrapper | gromacs/fileformats/xvg.py | 1 | 50302 | # -*- encoding: utf-8 -*-
# GromacsWrapper: formats.py
# Copyright (c) 2009-2012 Oliver Beckstein <orbeckst@gmail.com>
# Released under the GNU Public License 3 (or higher, your choice)
# See the file COPYING for details.
"""
Simple xmgrace XVG file format
==============================
Gromacs produces graphs in the ... | gpl-3.0 |
mcocdawc/chemcoord | src/chemcoord/constants.py | 1 | 68123 | # -*- coding: utf-8 -*-
###############################################################################
# If you are editing this file please consider commiting the change
# and sending a pull request to my Github account 'mcocdawc'.
# Normal dictionaries "cost" nearly nothing to be kept in RAM.
# Besides you don't int... | lgpl-3.0 |
eickenberg/scikit-learn | sklearn/metrics/tests/test_ranking.py | 1 | 35774 | from __future__ import division, print_function
import numpy as np
from itertools import product
import warnings
from sklearn import datasets
from sklearn import svm
from sklearn import ensemble
from sklearn.datasets import make_multilabel_classification
from sklearn.random_projection import sparse_random_matrix
fro... | bsd-3-clause |
shoyer/qspectra | qspectra/hamiltonian.py | 1 | 32656 | # TODO: to improve extendability, move this file into separate subfolder
from abc import ABCMeta, abstractmethod
from numbers import Number
import warnings
import numpy as np
import scipy.linalg
from .constants import GAUSSIAN_SD_FWHM
from .operator_tools import (transition_operator, operator_extend, unit_vec,
... | bsd-2-clause |
jackey-qiu/genx_pc_qiu | supportive_functions/backcor/data_integration.py | 1 | 41550 | import numpy as np
from numpy.matlib import repmat
from numpy.linalg import pinv
from matplotlib import pyplot
from scipy import misc
import fnmatch
import os
import matplotlib.patches as patches
import ctr_data
##The background subtraction algoritem is developped by Vincent Mazet with the copyright notice as below###... | gpl-3.0 |
eryueniaobp/contest | JDD_Loan_Demand/loand.py | 1 | 127239 | # encoding=utf-8
"""
@author : pengalg
信贷需求预测
"""
import numpy as np, traceback
import pandas as pd
import os,pickle,math
import re,datetime,time,sys,logging
from feature import Feature,StatFeature,SuperStatFeature
logging.basicConfig(level=logging.INFO,
format='%(asctime)s %(filename)s[line:%(l... | apache-2.0 |
pyramania/scipy | scipy/cluster/hierarchy.py | 1 | 98552 | """
========================================================
Hierarchical clustering (:mod:`scipy.cluster.hierarchy`)
========================================================
.. currentmodule:: scipy.cluster.hierarchy
These functions cut hierarchical clusterings into flat clusterings
or find the roots of the forest f... | bsd-3-clause |
mlperf/training_results_v0.6 | Fujitsu/benchmarks/resnet/implementations/mxnet/python/mxnet/model.py | 1 | 43244 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... | apache-2.0 |
VirusTotal/msticpy | msticpy/nbtools/nbwidgets.py | 1 | 40300 | # -------------------------------------------------------------------------
# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License. See License.txt in the project root for
# license information.
# --------------------------------------------------------------------------
"""Module ... | mit |
SU-ECE-17-7/ibeis | ibeis/algo/hots/vsone_pipeline.py | 1 | 60983 | # -*- coding: utf-8 -*-
"""
special pipeline for vsone specific functions
Current Issues:
* getting feature distinctiveness is too slow, we can either try a different
model, or precompute feature distinctiveness.
- we can reduce the size of the vsone shortlist
TODOLIST:
* Unconstrained is a terri... | apache-2.0 |
datapythonista/pandas | pandas/tests/io/xml/test_to_xml.py | 2 | 33590 | from io import (
BytesIO,
StringIO,
)
import os
from typing import Union
import numpy as np
import pytest
from pandas.compat import PY38
import pandas.util._test_decorators as td
from pandas import DataFrame
import pandas._testing as tm
from pandas.io.common import get_handle
from pandas.io.xml import read_... | bsd-3-clause |
kushalbhola/MyStuff | Practice/PythonApplication/env/Lib/site-packages/pandas/core/indexing.py | 1 | 85223 | import textwrap
from typing import Tuple
import warnings
import numpy as np
from pandas._libs.indexing import _NDFrameIndexerBase
from pandas._libs.lib import item_from_zerodim
from pandas.errors import AbstractMethodError
from pandas.util._decorators import Appender
from pandas.core.dtypes.common import (
ensur... | apache-2.0 |
Islast/BrainNetworksInPython | scona/scripts/make_figures.py | 1 | 156365 | #!/usr/bin/env python
'''
This code makes the figures for the manuscript "
'''
import seaborn as sns
import matplotlib.pylab as plt
import numpy as np
import networkx as nx
import pandas as pd
import matplotlib as mpl
import os
import sys
import matplotlib.image as mpimg
import matplotlib.gridspec as gridspec
from glo... | mit |
basaks/PyKrige | pykrige/uk3d.py | 1 | 44875 | from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
__doc__ = """Code by Benjamin S. Murphy
bscott.murphy@gmail.com
Dependencies:
numpy
scipy
matplotlib
Classes:
UniversalKriging3D: Support for 3D Univers... | bsd-3-clause |
mach0/mutant | mutantwidget.py | 1 | 46817 | """mutant - MUlti Temporal ANalysis Tool
begin : 2014/06/16
copyright : (c) 2014- by Werner Macho
email : werner.macho@gmail.com
based on valuetool
copyright : (C) 2008-2010 by G. Picard
__author__ = 'werner.macho@gmail.com'
__date__ = '2014/06/16'
__copyright__ = 'Copyright 2014, Werner Macho'
.. note:: This ... | gpl-3.0 |
dialounke/pylayers | pylayers/simul/link.py | 1 | 74985 | #
# -*- coding: utf-8 -*-
#
from __future__ import print_function
r"""
.. currentmodule:: pylayers.simul.link
.. autosummary::
:members:
"""
try:
from tvtk.api import tvtk
from mayavi.sources.vtk_data_source import VTKDataSource
from mayavi import mlab
except:
print('Layout:Mayavi is not instal... | mit |
moberweger/deep-prior | src/util/handpose_evaluation.py | 1 | 33406 | """Provides class for evaluating hand pose accuracy.
HandposeEvaluation provides interface for evaluating the hand pose accuracy.
ICVLHandposeEvaluation, NYUHandposeEvaluation are specific instances for different datasets.
Copyright 2015 Markus Oberweger, ICG,
Graz University of Technology <oberweger@icg.tugraz.at>
... | gpl-3.0 |
qkitgroup/qkit | qkit/measure/timedomain/quantum_machine/basic_qubit_experiments.py | 1 | 41383 | # Quantum machines qubit library
# started by M. Spiecker, 06.2020
#
# TODO add text
#
#
# HOW TO USE IT:
# Since the quantum machines card is a very versatile machine,
# the setup and the experiments will be very different.
# Thus use this file as template and look up for your experiments.
import inspect
import time... | gpl-2.0 |
eimrek/phase-field-crystal-mpi | python_code/equilibrium_algorithms.py | 1 | 32255 |
import numpy as np
import matplotlib.pyplot as plt
from collections import deque
import time
def element_wise_norm(array, num_points):
"""
:param array: an array of (3, nx, ny), where nx*ny=num_points
:return: the norm
"""
return np.linalg.norm(array.ravel(), ord=1)/(3*num_points)
def steepest_... | gpl-3.0 |
snowflakedb/snowflake-connector-python | src/snowflake/connector/cursor.py | 1 | 42920 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# Copyright (c) 2012-2021 Snowflake Computing Inc. All right reserved.
#
import logging
import re
import signal
import sys
import time
import uuid
from logging import getLogger
from threading import Lock, Timer
from typing import (
IO,
TYPE_CHECKING,
Dict,
... | apache-2.0 |
alephu5/Soundbyte | environment/lib/python3.3/site-packages/matplotlib/mlab.py | 1 | 97233 | """
Numerical python functions written for compatability with MATLAB
commands with the same names.
MATLAB compatible functions
-------------------------------
:func:`cohere`
Coherence (normalized cross spectral density)
:func:`csd`
Cross spectral density uing Welch's average periodogram
:func:`detrend`
Remov... | gpl-3.0 |
cython-testbed/pandas | pandas/core/sparse/frame.py | 1 | 37178 | """
Data structures for sparse float data. Life is made simpler by dealing only
with float64 data
"""
from __future__ import division
# pylint: disable=E1101,E1103,W0231,E0202
import warnings
from pandas.compat import lmap
from pandas import compat
import numpy as np
from pandas.core.dtypes.missing import isna, notna... | bsd-3-clause |
jat255/hyperspy | hyperspy/_signals/eds.py | 1 | 45498 | # -*- coding: utf-8 -*-
# Copyright 2007-2020 The HyperSpy developers
#
# This file is part of HyperSpy.
#
# HyperSpy is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at... | gpl-3.0 |
winklerand/pandas | pandas/tests/sparse/test_series.py | 1 | 57708 | # pylint: disable-msg=E1101,W0612
import operator
from datetime import datetime
import pytest
from numpy import nan
import numpy as np
import pandas as pd
from pandas import (Series, DataFrame, bdate_range,
isna, compat, _np_version_under1p12)
from pandas.tseries.offsets import BDay
import panda... | bsd-3-clause |
TimoRoth/oggm | oggm/core/flowline.py | 1 | 125238 | """Flowline modelling: bed shapes and model numerics.
"""
# Builtins
import logging
import copy
from collections import OrderedDict
from functools import partial
from time import gmtime, strftime
import os
import shutil
import warnings
# External libs
import numpy as np
import shapely.geometry as shpg
import xarray ... | bsd-3-clause |
pcrumley/Iseult | src/density_plots.py | 1 | 53431 | #!/usr/bin/env pythonw
import tkinter as Tk
from tkinter import ttk
import matplotlib
import numpy as np
import numpy.ma as ma
import new_cmaps
from new_cnorms import PowerNormWithNeg, PowerNormFunc
import matplotlib.colors as mcolors
import matplotlib.gridspec as gridspec
import matplotlib.patheffects as PathEffects
f... | gpl-3.0 |
rmaiko/pyvsim | pyvsim/Toolbox.py | 1 | 108488 | """
.. module :: Toolbox
:platform: Unix, Windows
:synopsis: Equipment model
This module packs models for equipment usually employed in PIV measurements.
.. moduleauthor :: Ricardo Entz <maiko at thebigheads.net>
.. license::
PyVSim v.1
Copyright 2013 Ricardo Entz
Lice... | apache-2.0 |
henrynj/PMLMC | surface_deformation.py | 1 | 31967 | #!/usr/bin/env python
#
# surface_deformation.py
#
import sys, os
import matplotlib
matplotlib.use("AGG")
import matplotlib.pyplot as plt
import numpy as np
from scipy.spatial.distance import cdist
from scipy.interpolate import UnivariateSpline
from itertools import islice
from config import MESHSIZES
clas... | gpl-3.0 |
jepegit/cellpy | dev_utils/ica_notebooks/fitting/icafit.py | 1 | 43527 | import os
import logging
import warnings
from pprint import pprint
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
from cellpy import cellreader, log
from cellpy.utils import ica
from lmfit import Parameters
from lmfit.models import (
GaussianModel,
PseudoVoigtModel,
ExponentialGauss... | mit |
start-jsk/jsk_apc | demos/selective_dualarm_grasping/node_scripts/dualarm_occluded_grasp_instance_segmentation.py | 1 | 32485 | #!/usr/bin/env python
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import easydict
import matplotlib
import numpy as np
import os.path as osp
# import time
import yaml
matplotlib.use('Agg') # NOQA
import chainer
import cv_bridge
from dynamic_reconfigu... | bsd-3-clause |
jreback/pandas | pandas/_testing/asserters.py | 1 | 46317 | from typing import Union, cast
import warnings
import numpy as np
from pandas._libs.lib import no_default
import pandas._libs.testing as _testing
from pandas.core.dtypes.common import (
is_bool,
is_categorical_dtype,
is_extension_array_dtype,
is_interval_dtype,
is_number,
is_numeric_dtype,
... | bsd-3-clause |
jreback/pandas | pandas/tests/indexes/test_base.py | 1 | 83805 | from collections import defaultdict
from datetime import datetime, timedelta
from io import StringIO
import math
import operator
import re
import numpy as np
import pytest
from pandas._libs.tslib import Timestamp
from pandas.compat import IS64
from pandas.compat.numpy import np_datetime64_compat
from pandas.util._tes... | bsd-3-clause |
tschaume/pymatgen | pymatgen/analysis/phase_diagram.py | 1 | 84422 | # coding: utf-8
# Copyright (c) Pymatgen Development Team.
# Distributed under the terms of the MIT License.
"""
This module defines tools to generate and analyze phase diagrams.
"""
import re
import collections
import itertools
import math
import logging
from monty.json import MSONable, MontyDecoder
from functools ... | mit |
NeuroDataDesign/seelviz | Tony/scripts/april10/analysis3.py | 1 | 43630 | #!/usr/bin/env python
#-*- coding:utf-8 -*-
import matplotlib
from matplotlib import pyplot as plt
import numpy as np
from numpy import linalg as LA
import cv2
from skimage import exposure
import math
import os
import plotly
from plotly.graph_objs import *
from plotly.offline import download_plotlyjs, init_notebook_m... | apache-2.0 |
jeremyclover/airflow | airflow/www/app.py | 1 | 70992 | from __future__ import print_function
from __future__ import division
from builtins import str
from past.builtins import basestring
from past.utils import old_div
import copy
from datetime import datetime, timedelta
import dateutil.parser
from functools import wraps
import inspect
from itertools import product
import j... | apache-2.0 |
cbertinato/pandas | pandas/tests/indexes/test_range.py | 1 | 34054 | from datetime import datetime
import numpy as np
import pytest
import pandas as pd
from pandas import Float64Index, Index, Int64Index, RangeIndex, Series
import pandas.util.testing as tm
from .test_numeric import Numeric
# aliases to make some tests easier to read
RI = RangeIndex
I64 = Int64Index
F64 = Float64Index... | bsd-3-clause |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/layout/_yaxis.py | 1 | 140033 | from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class YAxis(_BaseLayoutHierarchyType):
# class properties
# --------------------
_parent_path_str = "layout"
_path_str = "layout.yaxis"
_valid_props = {
"anchor",
"automargin"... | mit |
BigDataforYou/movie_recommendation_workshop_1 | big_data_4_you_demo_1/venv/lib/python2.7/site-packages/pandas/indexes/multi.py | 1 | 80197 |
# pylint: disable=E1101,E1103,W0232
import datetime
import warnings
from functools import partial
from sys import getsizeof
import numpy as np
import pandas.lib as lib
import pandas.index as _index
from pandas.lib import Timestamp
from pandas.compat import range, zip, lrange, lzip, map
from pandas.compat.numpy impor... | mit |
woolfson-group/isambard | isambard/optimisation/optimizer.py | 1 | 51014 | """Bio-inspired optimisation algorithms."""
from concurrent import futures
import datetime
import operator
import random
import warnings
import sys
from deap import base, creator, tools
import numpy
import matplotlib.pylab as plt
from external_programs.profit import run_profit
warning_string = """
optimizers.py is ... | mit |
plotly/plotly.py | packages/python/plotly/plotly/graph_objs/barpolar/marker/_colorbar.py | 1 | 73487 | from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class ColorBar(_BaseTraceHierarchyType):
# class properties
# --------------------
_parent_path_str = "barpolar.marker"
_path_str = "barpolar.marker.colorbar"
_valid_props = {
"bgcolor"... | mit |
gfyoung/scipy | scipy/signal/spectral.py | 3 | 73476 | """Tools for spectral analysis.
"""
from __future__ import division, print_function, absolute_import
import numpy as np
from scipy import fftpack
from . import signaltools
from .windows import get_window
from ._spectral import _lombscargle
from ._arraytools import const_ext, even_ext, odd_ext, zero_ext
import warning... | bsd-3-clause |
lmregus/Portfolio | python/design_patterns/env/lib/python3.7/site-packages/more_itertools/more.py | 1 | 76071 | from collections import Counter, defaultdict, deque
from collections.abc import Sequence
from functools import partial, wraps
from heapq import merge
from itertools import (
chain,
compress,
count,
cycle,
dropwhile,
groupby,
islice,
repeat,
starmap,
takewhile,
tee,
zip_lo... | mit |
francescobaldi86/Ecos2015PaperExtension | Python files/plotting.py | 1 | 31422 | import matplotlib.pyplot as plt
from helpers import d2df
import pandas as pd
import numpy as np
from matplotlib.patches import Rectangle
def plotMain(type, dict_structure, processed, *args):
# This function plots the contents of the analysed files.
# Two input values for "type" are accepted:
# - "off" [def... | mit |
rubennj/pvlib-python | pvlib/pvsystem.py | 1 | 40897 | """
The ``pvsystem`` module contains functions for modeling the output and
performance of PV modules and inverters.
"""
from __future__ import division
import logging
pvl_logger = logging.getLogger('pvlib')
import io
try:
from urllib2 import urlopen
except ImportError:
from urllib.request import urlopen
imp... | bsd-3-clause |
jshoyer/plantcv | utils/db-exporter-pcv2.py | 1 | 44618 | #!/usr/bin/env python
import argparse
import os
import sqlite3 as sq
import pandas as pd
import numpy as np
import time
# Parse command-line arguments
def options():
parser = argparse.ArgumentParser(description="Extract VIS object shape data from an SQLite database")
parser.add_argument("-d", "--database", h... | mit |
jreback/pandas | pandas/io/html.py | 1 | 34621 | """
:mod:`pandas.io.html` is a module containing functionality for dealing with
HTML IO.
"""
from collections import abc
import numbers
import os
import re
from typing import Dict, List, Optional, Pattern, Sequence, Tuple, Union
from pandas._typing import FilePathOrBuffer
from pandas.compat._optional import import_o... | bsd-3-clause |
allansp84/spectralcubes | antispoofing/spectralcubes/lowlevelfeatures/lowlevelfeatures.py | 1 | 35659 | # -*- coding: utf-8 -*-
import os
import sys
import cv2
import bob.io.video as video
import matplotlib
import matplotlib.pyplot as plt
from mpl_toolkits.axes_grid1 import AxesGrid
from scipy import ndimage
from scipy import mgrid
from scipy import stats
from scipy.signal import *
import skimage.color as skcolor
from s... | agpl-3.0 |
tynn/numpy | numpy/lib/function_base.py | 2 | 142404 | from __future__ import division, absolute_import, print_function
try:
# Accessing collections abstact classes from collections
# has been deprecated since Python 3.3
import collections.abc as collections_abc
except ImportError:
import collections as collections_abc
import re
import sys
import warnings
... | bsd-3-clause |
chrisjsewell/jsonextended | jsonextended/edict.py | 1 | 78337 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
""" a module to manipulate python dictionary like objects
"""
# internal packages
import copy
import json
import re
import logging
import sys
import textwrap
import uuid
from fnmatch import fnmatch
from functools import reduce, total_ordering
import warnings
warnings.simp... | mit |
bigdig/vnpy | vnpy/app/cta_strategy/backtestingPatch.py | 1 | 36042 | from collections import defaultdict
from datetime import date, datetime, timedelta
from typing import Callable
from itertools import product
from functools import lru_cache
from time import time
import multiprocessing
import random
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
from pandas im... | mit |
Quantipy/quantipy | quantipy/core/batch.py | 1 | 50824 | #!/usr/bin/python
# -*- coding: utf-8 -*-
import numpy as np
import pandas as pd
import quantipy as qp
from collections import OrderedDict
from quantipy.core.tools.qp_decorators import *
import copy as org_copy
import warnings
import re
from quantipy.core.tools.view.logic import (
has_any, has_all, has_count,
... | mit |
askielboe/JAVELIN | javelin/lcmodel.py | 1 | 100414 | #Last-modified: 08 Dec 2013 01:13:36
# generic packages
import numpy as np
#np.seterr(all='raise')
from numpy.random import normal, multivariate_normal
from scipy.optimize import fmin
import matplotlib.pyplot as plt
# internal packages
from cholesky_utils import cholesky, trisolve, chosolve, chodet, chosolve_from_tri... | gpl-2.0 |
kbrannan/PyHSPF | src/pyhspf/preprocessing/ncdcstations.py | 1 | 61949 | # ncdcstations.py
#
# David J. Lampert (djlampert@gmail.com)
#
# Last updated: 02/15/2015
#
# Purpose: classes to import climate data files to Python
import shutil, os, subprocess, pickle, io, gzip, datetime, tarfile
from urllib import request
from calendar import monthrange
from matplotlib import pyplot, dates... | bsd-3-clause |
rajegannathan/grasp-lift-eeg-cat-dog-solution-updated | python-packages/mne-python-0.10/mne/preprocessing/ica.py | 1 | 102548 | # Authors: Denis A. Engemann <denis.engemann@gmail.com>
# Alexandre Gramfort <alexandre.gramfort@telecom-paristech.fr>
# Juergen Dammers <j.dammers@fz-juelich.de>
#
# License: BSD (3-clause)
from inspect import getargspec, isfunction
from collections import namedtuple
from copy import deepcopy
impor... | bsd-3-clause |
soylentdeen/CIAO-commissioning-tools | fromEric/gral_statistics.py | 1 | 39805 | # -*- coding: utf-8 -*-
"""
Created on Fri Dec 19 15:32:29 2014
@author: egendron
How to launch the procedures in this file:
# Before doing anything: prepare yourself.
import pyfits
# define where the files are located... (you'll need to update this line
# when running script on your machine !!)
path = '/home/ege... | mit |
Winand/pandas | pandas/tests/tseries/test_timezones.py | 1 | 69356 | # pylint: disable-msg=E1101,W0612
import pytest
import pytz
import dateutil
import numpy as np
from dateutil.parser import parse
from pytz import NonExistentTimeError
from distutils.version import LooseVersion
from dateutil.tz import tzlocal, tzoffset
from datetime import datetime, timedelta, tzinfo, date
import pan... | bsd-3-clause |
google-research/tf-slim | tf_slim/metrics/metric_ops.py | 1 | 178438 | # coding=utf-8
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requ... | apache-2.0 |
giacomov/3ML | threeML/classicMLE/joint_likelihood.py | 1 | 41773 | from __future__ import print_function
from __future__ import division
from builtins import zip
from builtins import range
from builtins import object
from past.utils import old_div
import collections
import sys
import astromodels.core.model
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import s... | bsd-3-clause |
gfyoung/numpy | numpy/lib/histograms.py | 2 | 37394 | """
Histogram-related functions
"""
from __future__ import division, absolute_import, print_function
import operator
import warnings
import numpy as np
from numpy.compat.py3k import basestring
from numpy.core.overrides import array_function_dispatch
__all__ = ['histogram', 'histogramdd', 'histogram_bin_edges']
# ra... | bsd-3-clause |
flyconnectome/catbot | pybot.py | 1 | 78750 | """
Catbot (https://github.com/flyconnectome/catbot) is a Slack bot that interfaces with CATMAID and ZOTERO
Copyright (C) 2017 Philipp Schlegel
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software... | gpl-3.0 |
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