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analise-preditiva-credit-card.r
library("RCurl") library("rjson") # Accept SSL certificates issued by public Certificate Authorities options(RCurlOptions = list(cainfo = system.file("CurlSSL", "cacert.pem", package = "RCurl"))) h = basicTextGatherer() hdr = basicHeaderGatherer() req = list( Inputs = list( "input1...
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tweet_stream.R
# Description: This file is meant to recreate the tweetstream.py in R. # It loads necessary packages, makes a connection to Twitter api and # then captures tweets based on your search string # Author: Jason Canney # Date: 11/05/2014 # ------ Execute sections of code as instructed by highlight...
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is_big_endian.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/help_files.R \name{is_big_endian} \alias{is_big_endian} \title{System Endianness} \usage{ is_big_endian() } \value{ `TRUE` if big endian, `FALSE` if little endian. } \description{ Tests system endianness. Intel and AMD based systems are littl...
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test_proximity_matrix.R
context("proximity matrix") test_that("RasterLayer (adjacent non-NA pixels are proximal)", { # data x <- raster::raster(matrix(c(NA, 2:9), ncol = 3), xmn = 0, ymn = 0, xmx = 3, ymx = 3) m <- proximity_matrix(x, distance = 1) s <- boundary_matrix(x) s[s > 0] <- 1 Matrix::diag(s) <- 0 ...
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BSB_MiraRiver_OverWintering_Migration_Temperature_plots.R
#2016-10-19 Colin F Buhariwalla # OVERWINTERING - plot departure/arrival times with temperature across years # last updated: # This script is meant to plot the overwintering departure/return events from Albert bridge into the OW area + Leaving overwintering area # I need: 1) Temperature at BSB MR07 from Hobo Temp Log...
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library(shiny) library(MASS) library(caret) data("Melanoma") Melanoma$status <- as.factor(Melanoma$status) levels(Melanoma$status) <- c("Died_Melanoma", "Alive", "Died_Other_Causes") Melanoma$sex <- as.factor(Melanoma$sex) levels(Melanoma$sex) <- c("Female","Male") Melanoma$year <- as.factor(Melanoma$year) Melanom...
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partnership_transactions.R
library('tidyverse') partnership_transactions = function(){ Fund.raw = read_delim("data/201805 - Partnership_Investment_Transaction_Download.csv", delim = "|") df_group_fees = Fund.raw %>% transmute(`Asset Class` = `FUND_SHORT_NAME`, `Fund Name` = `INVESTMENT_NAME`, Date = `...
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sna_script.r
#load the required packages into the R Script packages.req <- c("igraph","sna","dplyr","stringr","dplyr","ggplot2","network","reader") packages.diff <- setdiff(packages.req,rownames(installed.packages())) if(length(packages.diff)>0){ install.packages(packages.diff) } invisible(sapply(packages.req,library,character.o...
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reduced.plots.R
library(plyr) library(ggplot2) # Expects working directory set to "MeyerPlanes" reduced.path <- file.path(getwd(), "Data", "Patents", "patents_small.csv") reduced.df <- read.csv(file = reduced.path, as.is = TRUE, header = FALSE) # --- define languages in order listed in file --- langs.str <- c('Britain','Germany','Fr...
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detect-backout-commits.R
rm(list=ls()) library(dplyr) library(stringr) source("../lib/unlist-column.R") commits <- readRDS("../data/firefox-commits.rds") ### commits$bug_fixed <- str_match(commits$message, "(?i)^ *bug *([0-9]{5,6})\\b")[,2] #' # Find the bugs backed out by each backout commit #' First, let's threat the case where the comm...
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markhocky/MarketSimulator
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Orders.R
#' #' Parent object from which different Order types may be derived. #' setClass("Order", representation( instrument = "character", ID = "character", status = "OrderStatus", quantity = "integer", execution.price = "xts", txn.cost.model = "function", submission.time = "POSIXct", ...
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plot3.R
##Read the Txt file powerconsumption <- read.table("./data/household_power_consumption.txt", sep=";", stringsAsFactors=FALSE, dec=".", header=TRUE) ##Create a subset with only days "1/2/2007" and "2/2/2007" powersubset<-powerconsumption[powerconsumption$Date %in% c("1/2/2007", "2/2/2007"),] ##Create Date with Time Ob...
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jjustison/rtreeducken
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sim_sptree_bdp_time.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/RcppExports.R \name{sim_sptree_bdp_time} \alias{sim_sptree_bdp_time} \title{Simulates species tree using constant rate birth-death process to a time} \usage{ sim_sptree_bdp_time(sbr_, sdr_, numbsim_, t_) } \arguments{ \item{sbr_}{species birt...
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oldWeather5.R
#' oldWeather5 - Process data for Panoptes oldWeather #' #' Reads the data files downloaded from #' http://www.zooniverse.org/lab/1253/data-exports (project data) & #' http://www.zooniverse.org/lab/28/data-exports (Talk data). #' #' @section functions: #' \itemize{ #' \item \code{\link{ReadClassifications}} - Get ...
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cran/tensorBSS
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ggtaugplot <- function (x, crit = "gn", type = "l", scales = "free", position = "horizontal", ylab = crit, xlab = "component", main = deparse(substitute(x)), ...) { crit <- match.arg(crit, c("gn", "fn", "phin", "lambda")) position ...
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tomvar/bundling
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Prices.MB.R
#' This function creates a vector of combination from sequences of prices p.1, p.2 and pb #' It will be searched to find prices that maximize profits in MB strategy #' #' @param p.1.min.max Minimum and maximum value of price p1 [p.1.min.max <- c(p.1.min, p.1.max)] #' @param p.2.min.max Minimum and maximum value of pric...
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tremenyi/AgroClimGrapeIndices
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cell_extract_spatial.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ACGI_functions.R \name{cell_extract_spatial} \alias{cell_extract_spatial} \title{Spatial cell extract} \usage{ cell_extract_spatial(raster_filename, spatial_layer, subset_layer = NULL, fun_list = list(mean = mean, var = var, n = length)) } ...
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tabSERE.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tabSERE.R \name{tabSERE} \alias{tabSERE} \title{SERE statistics for several samples} \usage{ tabSERE(counts) } \arguments{ \item{counts}{\code{matrix} of raw counts} } \value{ The \code{matrix} of SERE values } \description{ Compute the SERE ...
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<<<<<<< HEAD #reading table dt <- read.table("household_power_consumption.txt",sep=";",header = TRUE,stringsAsFactors=FALSE) #making date format dt$Date <- as.Date(dt$Date,format="%d/%m/%Y") #subsetting 2007-02-01 ~ 2007-02-02 dt1 <- subset(dt,dt$Date == "2007-02-01"|dt$Date =="2007-02-02") #Setting time in dt1 dt1$Tim...
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#three rules for tidy dataset #1. Each variable should have a column #2. Each pbservation must have its own row #3. Each value must have its own cell table1%>% group_by(year,country)%>% summarize(n_cases=sum(cases)) table1%>% group_by(country)%>% mutate(per_cases=sum(cases)*10000/sum(population)) #Spr...
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#' Plot Returns of different portfolios #' #' Plot one portfolio-development in comparison to two other ones #' #' @param returns_safe A xts with several columns consisting of data #' @param portf_safe A vector defining the portfolio weights #' @param returns_medium A xts with several columns consisting of data #' @par...
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###PREG3 #Preg3.a vec1 <- c(2,1,1,3,2,1,0) vec2 <- c(3,8,2,2,0,0,0) #Aqui vec1[1]=2, vec2[2]=8, entonces el la condicion vec1[1]+vec2[2]=10 es verdadera, por lo que se imprimira el mensaje if((vec1[1]+vec2[2])==10){ cat("Imprime el resultado!") } #vec1[1]=2,vec2[1]=3, como ambos enunciados son verdaderos, el mensaje ...
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Do not modify this file since it was automatically generated from: % % ChipEffectFile.xam.R % % by the Rdoc compiler part of the R.oo package. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{getXAM.ChipEffe...
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library(ggplot2) library(dplyr) library(tidyr) library(broom) library(scales) finRawFile <- "../munged_data/financial_raw_singletons.csv" autoRawFile <- "../munged_data/auto_raw_singletons.csv" finRawDF <- read.csv(file=finRawFile) %>% mutate(Algorithm = as.factor(Algorithm), Config = as.factor(Config)) %>% muta...
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# Start the RServer and then interpret the source! # Open the Expression dialog and then enter # n1 to see the results in the console ! L<-matrix(0,nrow=4,ncol=4) #Birth-rates L[1,]<-c(0,4,3,1) #Probability of survival L[2,1]<-0.7 L[3,2]<-0.9 L[4,3]<-0.5 #Abundance n0<-c(9,5,4,2) #Abundance after one ...
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# Read the data into R data<-read.csv(file="household_power_consumption.txt", header=TRUE,sep=";",colClasses="character") # Grab the data for the two dates of interest relData<-subset(data, Date == "1/2/2007" | Date == "2/2/2007") # Combine the Date and Time columns into a single time object using as.POSIXct timeobj ...
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#' Compute the envelope of X using Hilbert transform. #' #' Compute the envelope of the signal matrix X using the Hilbert transform. #' To avoid long transforms, this function uses the overlap and add method. #' #' @param X a vector or matrix of signals. If X is a matrix, each column is treated as a separate sign...
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############################################################################### ## Cicero trajectories ############################################################################### # default variables threads <- 1 dims <- 50 # commandline arguments args = commandArgs(TRUE) if(length(args)==4){ # read in co...
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library(shiny) shinyUI(pageWithSidebar( headerPanel("Calculation of the total cost of a Loan"), sidebarPanel( h4('Introduction / Documentation'), h5('The goal of this application is to calculate to cost of amortization of a loan. In this application just amortization for fixed loans could be ...
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## This is an example of pulling SIPP Panel 2008's 16 waves data. Unzip and manipulate it in R. library(readr) library(SAScii) library(data.table) # library(rstudioapi) # load it # current_path <- getActiveDocumentContext()$path # setwd(dirname(current_path )) ## pull, unzip and save the core files save<-function(i...
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library(mapmate) suppressMessages(library(dplyr)) context("save_ts [functions.R]") data(annualtemps) temps <- mutate(annualtemps, frameID = Year - min(Year) + 1) %>% group_by(Year, frameID) %>% summarise(z=mean(z)) xlm <- range(temps$Year) ylm <- range(temps$z) g1a <- save_ts(temps, "Year", "z", id="frameID", cap=r...
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SNonparaAnalysis <- function(self.eval, v1, ..., grouping.var, moment, jointly = FALSE) { # Simplified Non-Parametric Analysis. Takes, as an argument, the self-assessment and vignette variables, together with the grouping # variables as a dataframe. Calculates by itself the "c" variable through NonparaComparable()...
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## makeCacheMatrix and cacheSolve work by creating ## a vector of functions that create and stores ## the value of a matrix inverse, then caches its inverse ## then recalls that value from the cache or computes it ## and stores the calculation in the cache ## makeCacheMatrix function creates a list object ## with func...
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### lmer_tab ---- lmer_tab <- tabItem( tabName = "lmer_tab", fluidRow( column( width = 4, plotOutput(outputId = "ranef_sub_plot", height = "auto") ), column( width = 8, plotOutput(outputId = "ranef_stim_plot", height = "auto") ) ), box( title = "VarCor", solidHead...
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#' Summarize abundance by group #' #' This function summarizes taxa/pathway abundance tables to provide mean, sd, count by groups. #' @param taxtab taxa/pathway abundance table from phylum to species or any preferred highest taxa level. #' @param sumvar main variable for summary #' @param groupvar variable to be ...
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# # See the performance of In-Mapper Combiner v.s. Classic # library(ggplot2) theme_set(theme_bw(base_size = 22)) myGthm <- theme(text = element_text(size = 25)) perf <- read.delim("src/fare_count/perform_benchmark.tab") perf$SizeLevel <- factor(perf$Size, sort(unique(perf$Size)), format(sort(...
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#plotting in R using ggplot2 # day2 #Ethan #30/01/2019 #load libraries library(tidyverse) lam <- read_csv("~/R/R/data/laminaria.csv") chicks <- datasets::ChickWeight ??ChickWeight # the "??" tells R to refer you to the help tab ggplot(data = chicks, aes(x = Time, y = weight)) + # ggplot is a function that allows a ...
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library(ggplot2) library(reshape) library(scales) library(choroplethr) ggplot(grades_by_month, aes(x=month, y=value, group=variable, color=variable)) + geom_line() + geom_hline(aes(yintercept=avg), linetype="dashed", color="gray57") + xlab("") + ylab("% of Restaurants with 'A' Grade") + scale_y_continuous(labels=...
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\name{replace_number} \alias{replace_number} \title{Replace Numbers With Text Representation} \usage{ replace_number(text.var, num.paste = "separate") } \arguments{ \item{text.var}{The text variable.} \item{num.paste}{A character vector of either \code{"separate"} or \code{"combine"}. Of \code{"separate"} i...
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library(shiny) function(input, output) { output$grafi1 <- renderPlot({ tabela1 <- BDP %>% filter(drzava == input$drzava1, sestava ==input$sestava) print(ggplot(tabela1, aes(x = leta, y = vrednost/1000)) + geom_line() + xlab("leta")+ ylab("vrednost") + ggtitle("Vrednost BDP-ja v ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/google_map_layers.R \name{add_kml} \alias{add_kml} \title{Add KML} \usage{ add_kml(map, kml_data, layer_id = NULL) } \arguments{ \item{map}{a googleway map object created from \code{google_map()}} \item{kml_data}{kml data layer} \item{layer...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/summary.bootAverageDominanceAnalysis.r \name{summary.bootAverageDominanceAnalysis} \alias{summary.bootAverageDominanceAnalysis} \title{Summary for bootAverageDominanceAnalysis.} \usage{ \method{summary}{bootAverageDominanceAnalysis}(object, f...
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context("Variable types") with_mock_HTTP({ ds <- loadDataset("test ds") test_that("Variable type method", { expect_identical(type(ds[["birthyr"]]), "numeric") expect_identical(type(ds$gender), "categorical") }) test_that("Changing numeric type by <- makes requests", { expect_P...
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library("ggplot2") x = read.csv("out-ej7/plot-error-after-prune.csv", header=F) a = aggregate(x[x[,1]=='a',3:4], list(x[x[,1]=='a',2]), mean) b = aggregate(x[x[,1]=='b',3:4], list(x[x[,1]=='b',2]), mean) w = read.csv("out-ej7/discrete-error.csv", header=F) ann = aggregate(w[w[,1]=='a',3], list(w[w[,1]=='a',2]), median)...
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#This is the script I used to plot allele frequency change at Cry1 and Cry2 associated loci over time #04122021 MF library(tidyr); library(ggplot2) setwd("~/Desktop/Hz_fieldColl_pop_gen/Reanalysis_PNAS") #loading resistance-associated loci with signatures of temporal change in the field Cry1 <- read.table("./hiCry1F...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/with.R \name{with_check_disabled} \alias{with_check_disabled} \title{Evaluate an expression with eplusr checking components disabled} \usage{ with_check_disabled(disable, expr) } \arguments{ \item{disable}{Names of checking components to disa...
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## Save actual matrix and return inverse of matrix from cache, ## (if calculation is already done) or first calculate inverse,cache it and then ## return ## This function caches the actual and inverse of matrix makeCacheMatrix <- function(x = matrix()) { invs <- NULL set <- function(y) { ...
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library(magrittr) library(httr) library(rvest) library(stringr) library(reshape2) library(knitr) library(ggplot2) library(plotly) Sys.setlocale(category = "LC_ALL", locale = "") getDataformCWB <- function(iterm){ fromdate <- Sys.Date()-4 # "2017-01-06" todate <- Sys.Date()-1 # "2017-01-06" date <- seq.Date(f...
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# Libraries library(tidyverse) # BES data source('get_bes_data.R', encoding = "UTF-8") # Weather data source('get_weather_data.R') # # Lagged weather data # source('get_wide_weather.R') # IRS data source('get_irs_data.R') # ITN data source('get_itn_data.R') # Get population into itn itn <- left_join(x = itn, ...
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library(dplyr) library(CKMRsim) library(ggplot2) # read in the "linked mhaps" but treat them as unlinked mhlist <- long_markers_to_X_l_list(D = linked_mhaps, kappa_matrix = kappas[c("MZ", "PO", "FS", "HS", "U"), ]) # add the matrices that account for genotyping error mhlist2 <- ...
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state_maps <- readRDS('C:/Users/craig/OneDrive/Documents/R Projects/COVID19Shiny/COVID_Tracker_1.0/state_maps.rds') nation_map <- readRDS('C:/Users/craig/OneDrive/Documents/R Projects/COVID19Shiny/COVID_Tracker_1.0/nation_map.rds') ca_counties_map <- readRDS('C:/Users/craig/OneDrive/Documents/R Projects/COVID19Shiny/CO...
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# summary tables ---------------------------------------------------------- setwd("~/Dropbox/climate change/food security/climate and crop pressure MS/data/ascii_crops_hires") C_TO_R<-data.frame(read.csv("COUNTRY_TO_REGION.csv", header=TRUE)) # now just need to use plyr and ddply to aggregate by region and subregi...
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################################################################ ################################################################ ### ### ### DATA INPUT AND Preprocessing ### ### ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/gl.assign.r \name{gl.assign} \alias{gl.assign} \title{Assign an individual of unknown provenance to population} \usage{ gl.assign( x, unknown, nmin = 10, dim = NULL, alpha = 0.05, threshold = 0, verbose = 3 ) } \arguments{ \item...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/model2netcdf.STICS.R \name{model2netcdf.STICS} \alias{model2netcdf.STICS} \title{Code to convert STICS' output into netCDF format} \usage{ model2netcdf.STICS( outdir, sitelat, sitelon, start_date, end_date, overwrite = FALSE ) } \...
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\name{event1s.df} \alias{event1s.df} \docType{data} \title{ Data frame containing event names } \description{ A data frame containing event names, There are 45 rows. Each row has 26 event names. } \usage{data(event1s.df)} \format{ A data frame with 45 observations or rows. } \note{ The event names are ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/cert.R \name{createLabtestDataFrame} \alias{createLabtestDataFrame} \title{Create data frame for a laboratory test information} \usage{ createLabtestDataFrame(id, name, type) } \arguments{ \item{id}{OMOP CONCEPT ID of laboratory test} \item{...
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#============================================================================= #Load libraries #============================================================================= library(tidyverse) library(RandomFields) library(vegan) #Patrick Thompson's metacommunity model functions: source("./mcomsimr-master/R/MC_simula...
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% Generated by roxygen2 (4.1.0): do not edit by hand % Please edit documentation in R/cdbAddAttachment.R \name{cdbAddAttachment} \alias{cdbAddAttachment} \title{Add attachments} \usage{ cdbAddAttachment(cdb) } \arguments{ \item{cdb}{The list \code{cdb} has to contain \code{cdb$fileName},\code{cdb$serverName}, \code{cdb...
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#PC 4 #Next time do more notes. summary(week3_dataset.tanya) ncol(week3_dataset.tanya) nrow(week3_dataset.tanya) sd(week3_dataset.tanya$x) sd(week3_dataset.tanya$y) var(week3_dataset.tanya$x) var(week3_dataset.tanya$y) hist(week3_dataset.tanya$x) hist(week3_dataset.tanya$j) hist(week3_dataset.tanya$i) hist(week3_dat...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/gregorian-year-day.R \name{year-day-arithmetic} \alias{year-day-arithmetic} \alias{add_years.clock_year_day} \title{Arithmetic: year-day} \usage{ \method{add_years}{clock_year_day}(x, n, ...) } \arguments{ \item{x}{\verb{[clock_year_day]} A ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/salvage_model.R \name{salvage_model} \alias{salvage_model} \title{Salvage model} \usage{ salvage_model(facility) } \arguments{ \item{facility}{Water export facility: CVP, SWP, both} } \description{ Zero-inflated model of salvage as function o...
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data <- read.csv(file = "~/GitHub/CrossSim/general_statistics_1000_1.csv", header = TRUE, sep = ',') data <- data[order(data$Number.of.Back.Crosses), ] qplot(data$Number.of.Back.Crosses, data$Percent.Selected.Chromosome, data = data, geom = "jitter")
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/tailindexplot.R \name{tailindexplot} \alias{tailindexplot} \title{tailindexplot} \usage{ tailindexplot(es, params) } \arguments{ \item{es}{list containing tail estimates from a single sample} \item{params}{(optional) list (see below)} } \val...
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library(rgdal) library(sp) library(GISTools) library(RColorBrewer) library(ggplot2) library(reshape2) library(grid) library(gridExtra) library(foreign) library(spdep) # Lista de librerías: list.of.packages <- c("rgdal", "sp", "GISTools", "RColorBrewer", "ggplot2", "reshape2", "...
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#' @encoding UTF-8 #' @title Create canonical partition and find unique canonical partitions in a list of partitions. #' #' @description #' It is used to convert any partition to a canonical partition. A canonical partition is a partition where the first unit is in cluster 1, the next unit that is not in cluster 1...
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# Code used to set up Ozone Pollution in EU # Chapter 7 Mapping section # Net result is eu_o3.csv in this directory # Data requires manual download from # http://www.eea.europa.eu/data-and-maps/data/airbase-the-european-air-quality-database-8 # Download both the stations and the statistics zip files o3stations = re...
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#' Discard Container Elements #' #' Search and remove an element from an object. If the element is not found, #' ignore the attempt. #' @param .x any `R` object. #' @param ... elements to be discarded. #' @export discard <- function(.x, ...) UseMethod("discard") #' @rdname discard #' @export ref_discard <- function(.x...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/dcleaner.R \docType{package} \name{dcleaner} \alias{dcleaner} \title{dcleaner: A package for cleanning and mungling data, importing and exporting data to DB.} \description{ The dcleaner package provides three categories of important functions...
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######################################################################## path="LncEvoDevo/" pathResults=paste(path, "results/differential_expression/", sep="") ######################################################################## set.seed(19) options(stringsAsFactors=F) library(DESeq2) ########################...
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#' genPoints #' Generates one or two dimensional points. #' #' Generates one or two dimensional points from one of distributions in base R. #' The user can set up bounds on the dimensions. If bounds are set then genPoints() #' will discard any points outside the bounds and resample. #' #' Note that if the user cho...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/get_max_taxonomic_rank.R \name{get_max_taxonomic_rank} \alias{get_max_taxonomic_rank} \title{Determine the lowest level of taxonomic classification} \usage{ get_max_taxonomic_rank(x, return_rank_only = FALSE) } \arguments{ \item{x}{Either a p...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/data.R \docType{data} \name{Daniels_2020C} \alias{Daniels_2020C} \title{24-SNP barcode data from Richard Toll, Senegal (Daniels et al., 2020)} \format{ A dataframe with 30 columns, giving sample ID and year (columns 1:2), genomic data at 24...
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# Flow cytometry measurements flow = '/nfs/turbo/bakulski1/Datasets/HRS/jonheiss/sensitive/flow/hrsflowdata2016.sas7bdat' vbs = '/nfs/turbo/bakulski1/Datasets/HRS/jonheiss/sensitive/flow/hrs2016vbs.sas7bdat' xwalk = '/nfs/turbo/bakulski1/Datasets/HRS/jonheiss/sensitive/flow/xwalk.csv' flow %<>% read_sas %>% as.da...
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library(VariantAnnotation) ##target sequencing data target <- readVcf("/users/jli/target.dup.vcf", "hg19") target.gt <- geno(target)$GT target.gt <- as.data.frame(target.gt, stringsAsFactors = F) target.gt[target.gt == "."] <- NA gmkf <- readVcf("/users/jli/gmkf.dup.vcf", "hg19") gmkf.gt <- geno(gmkf)$GT gmkf.gt <- ...
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# Problem 2: Even Fibonacci numbers # https://projecteuler.net/problem=2 # By considering the terms in the Fibonacci sequence whose values do not exceed four million, find the sum of the even-valued terms. # http://r.prevos.net/euler-problem-2/ fib <- c(1, 2) #Define first two numbers while (max(fib) < 4E+06) { ...
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# Copyright 2019 Province of British Columbia # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed...
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# Set-up the data generating mechainsm set.seed(666) N <- 500 x <- runif(N, max=10) alpha <- 1 beta <- 2 y <- alpha + beta * x + rnorm(N, sd = .6 * x) p <- 0.95 # The dataset to be used for estiamtion data_set <- list(y = y, x = x, p = p) data_frame <- as.data.frame(data_set)[-3] jags_code <- " ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/devicefarm_operations.R \name{devicefarm_create_upload} \alias{devicefarm_create_upload} \title{Uploads an app or test scripts} \usage{ devicefarm_create_upload(projectArn, name, type, contentType) } \arguments{ \item{projectArn}{[required] T...
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#PAGE=94 q1=65.5+(2*3)/42 q3=68.5+(10*3)/27 q=(q3-q1)/2 q2=(q3+q1)/2 q2=round(q2,2) q=round(q,2) cat(q2,'+',q,'kg') cat(q2,'-',q,'kg')
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## makeCacheMatrix creates a special matrix that can cache its inverse makeCacheMatrix <- function(x = matrix()) { matinv <<- solve(x) set <- function(y) { x <<- y matinv <<- NULL } get <- function() x setmatinv <- function(matinv) matinv <<- matinv getmatinv <- function() matinv list(set = set, ge...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/intersect_prices.R \name{intersect_prices} \alias{intersect_prices} \title{Return commmon time series} \usage{ intersect_prices(prices) } \arguments{ \item{prices}{List of price dataframes} } \value{ Input dataframes with common time series t...
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% Generated by roxygen2 (4.1.1.9000): do not edit by hand % Please edit documentation in R/qtlpvl-package.R \docType{data} \name{fake.phenos} \alias{fake.phenos} \title{Simulated Small Gene Expression Data Set} \format{A matrix with 120 individuals in rows, 10 traits in columns.} \description{ Simulated gene expression...
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##' @importFrom ggplot2 fortify ##' @importFrom ggplot2 ggplot ##' @importFrom ggplot2 aes_string ##' @importFrom ggplot2 geom_point ##' @importFrom ggplot2 scale_color_gradient ##' @importFrom ggplot2 xlab ##' @importFrom ggplot2 ylab ##' @importFrom ggplot2 ggtitle ##' @author Guangchuang Yu, Vitalii Kleshchevnikov m...
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source("shrinkage_metoder/lars/lasso/bic/insample.R") covTest(lasso_fit, x_train, y_train) which(coef(lasso_fit, s = lasso_bic$f_hat, mode = "fraction")!=0) #variablerne 21, 35, 31,32,19, 79 tilføjes og fjernes igen colnames(x_train)[79] #variablen 78 bliver tilføjet, fjernet og tilføjet igen.
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detecterror.R
data <- read.csv("anti-ccp.csv") library(dtametasa) sapply(seq(1,0.1,-0.2), function(p) { fit <- try(dtametasa.rc(data, p=p)) if(inherits(fit, "try-error")) par <- rep(NA,5) else fit$par } )
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presentation_times.R
#!/usr/bin/env Rscript # for melt library("reshape") # for pretty plotting library("ggplot2") # for help with date labels and scaling library("scales") # Read in raw times times.raw <- read.csv('decimal_times.csv') # make a copy to clean up times.clean <- times.raw # make rownames first column rownames(times.clean)...
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Stochastic-Squirrel/ISLR_notes
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chapter5_resampling_lab.R
library(tidyverse) library(ISLR) library(boot) set.seed(1) #THE VALIDATION SET APPROACH #sample without replacement from numbers 1:392 train <- sample(392,196) lm_model <- lm(mpg~horsepower, data = Auto , subset = train) #Calculate MSE = average of (Actual - predicted)^2 mse_lm_model <- (Auto[-train,"mpg"] - predic...
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bgorillaz/Capstone
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regression_curv.R
#load packages library(data.table) library(pscl) library(MASS) library(ndot.tools) #set dir setwd("/Users/ryanloos/Capstone/") #load data curv <- fread("clean_data/curv_for_model.csv") #refactorize columns... for(var in colnames(curv)) { if (class(curv[[var]]) == "character") { curv[[var]] <- as.factor(curv[[va...
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akhikolla/TestedPackages-NoIssues
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periodicTrapRule1D.Rd
% Generated by roxygen2: do not edit by hand % Please edit documentation in R/auxiliary.R \name{periodicTrapRule1D} \alias{periodicTrapRule1D} \alias{periodicTrapRule2D} \alias{periodicTrapRule3D} \alias{integrateSimp1D} \alias{integrateSimp2D} \alias{integrateSimp3D} \title{Quadrature rules in 1D, 2D and 3D} \usage{ p...
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/ui.R
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raulzr/compstat2016
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ui.R
library(shiny) shinyUI(fluidPage( tabsetPanel( tabPanel("Uno", tarea1UI("A")), tabPanel("Dos", tarea2UI("B")), tabPanel("Cuatro", tarea4UI("C")), tabPanel("Cinco", tarea5UI("D")) ) ) )
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/R/make_diagram.R
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wzbillings/flowdiagramr
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make_diagram.R
#' Make a ggplot2 model diagram. #' #' @description #' `make_diagram()` generates a **ggplot2** object based on the data frames #' made with \code{\link{prepare_diagram}}. The function only applies #' aesthetics that are not associated with x, y locations. Colors, linetypes, #' and other graphical options can be set by...
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/AccountingDiscount.R
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shineice/Py
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r
AccountingDiscount.R
rm(list=ls()) library(RODBC) library(dplyr) library(stringr) library(readxl) library(lubridate) library(mailR) m <- as.numeric(format(Sys.Date(), "%m")) m=m-1 ddd=1 ##get week data channel <- odbcConnect("NetSuite", uid="yao.guan@top-line.com", pwd="NetYG@Davis") discount<-sqlQuery(channel,paste0( "select ITEMS.Na...
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/predict_validate.R
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prashantg123/PMnPred
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2020-03-16T14:21:34.944811
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predict_validate.R
library(devtools) load_all("d:/InfoTrie/global") zz <- file("d:/InfoTrie/output/error.txt", open="wt") sink(zz, type="message") args <- commandArgs(TRUE) input <- args[1] params <- ReadParam(input) write.csv(input, paste0(params$app.path,"/output/input.csv")) data<- read.csv(params$file.name, header = TRUE) value...
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/data/genthat_extracted_code/spacejam/examples/plot.SJ.Rd.R
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surayaaramli/typeRrh
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2023-05-05T04:05:31.617869
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plot.SJ.Rd.R
library(spacejam) ### Name: plot.SJ ### Title: plot an object of class 'SJ' or 'SJ.dag' ### Aliases: plot.SJ plot.SJ.dag ### ** Examples p <- 100 #variables n <- 50 #observations #Generate Data set.seed(20) g <- rdag(p,80) data <- generate.dag.data(g,n,basesd=c(1,0.5,0.5)) X <- data$X #Fit conditional independenc...
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/exercicios_cap2.R
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aglotero/ct-234
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refs/heads/master
2021-01-10T14:56:00.547217
2016-03-12T20:59:21
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53,752,849
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exercicios_cap2.R
naturaisCrescentes <- function(n){ if(n < 0) { return('') } naturaisCrescentes(n-1) cat(paste0(n, ' ')) } naturaisDecrescentes <- function(n){ cat(paste0(n, ' ')) if(n == 0) { return('') } naturaisDecrescentes(n-1) } maximoEmVetor <- function(vetor){ if(length(vetor) == 1){ ...
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yvonnechanlove97/Multi-stage-Financial-Modeling-R
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2022-10-17T22:27:57.640942
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preprocessing.R
## ----fig.width=7, fig.height=4, warning=F, message=F-------------------------- library(FinancialModelingR) library(png) library(grid) img <- readPNG("private_data/july2020.PNG") grid.raster(img) ## ----------------------------------------------------------------------------- contractsForJuly2020 <- FinancialModeling...
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/momentum/rebal-frequency/combine.R
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no_license
stockviz/blog
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combine.R
library('quantmod') library('PerformanceAnalytics') library('PortfolioAnalytics') library('tidyverse') library('lubridate') options("scipen"=100) options(stringsAsFactors = FALSE) source("D:/StockViz/public/blog/common/plot.common.R") reportPath <- "." load(sprintf("%s/symRets.Rdata", reportPath)) #symRets symRe...
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ices-tools-dev/FishPi2
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class1Trip.R
#' validity Trip method #' #' @param object a time object #' validTrip<-function(object){ #Triptype<-NULL #utils::data(Triptype,package="fishpi2qc") #print(Triptype) check<-TRUE #data length #if(F){ #object<-new("Trip") nomslot<-methods::slotNames(object) lengthall<-c() for(i in nomslot){ len0<-length(...
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ingted/R-Examples
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map.soa.sf.R
map.soa.sf <- function(xdata,ydata,date,rts,g,w=NULL,sg="ssm",mk="dmu"){ # Initial checks if(is.na(match(rts,c("crs","vrs","irs","drs")))){stop('rts must be "crs", "vrs", "irs", or "drs".')} if(is.na(match(sg,c("ssm","max","min")))){stop('sg must be "ssm", "max", or "min".')} if(is.na(match(mk,c("dmu",...