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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/geneXplain.R \name{gx.get} \alias{gx.get} \title{Gets a table from the platform workspace} \usage{ gx.get(path) } \arguments{ \item{path}{path of object to load into a data.frame} } \value{ a list containing the table } \description{ Returns ...
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library(HMP) ### Name: tonsils ### Title: Palatine Tonsil Data Set ### Aliases: tonsils ### Keywords: datasets ### ** Examples data(tonsils)
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library(genoPlotR) # 1) The following lines produce the alignment of all Bombella and Commensalibacter genomes and represent the synteny across all these genomes. bbone <- read_mauve_backbone("alignment_all.backbone", ref=2) name<-c("PacBio-0368", "Bom_368","Bom_378","Bom_380","Bom_385","Bom_387", "Com_392", "Com_...
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#' @title Metric: Activity Type Frequency #' #' @description Provides summary statistics about the frequency of activity types at the level of traces, cases or activity types #'' #' @param eventlog The event log to be used. An object of class #' \code{eventlog}. #' #' @param level_of_analysis At which level the analysi...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/likert2prop.R \name{likert2prop} \alias{likert2prop} \title{Function to convert Likert scale data to proportions} \usage{ likert2prop(data, id, ..., colsList = NULL, minLikert = 1) } \arguments{ \item{data}{Your dataset} \item{id}{ID column ...
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library(rmarkdown) library(docopt) doc <- "Usage: knit_Rmd.R [--help] [--input INPUT] [--output OUT] -i --input INPUT path to rmarkdown -o --output OUTPUT name of output html file to write -h --help display this help message" opts <- docopt(doc) print(opts) # Render Rmd render( input = opts$...
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#' For use with EQAO ISD files #' #' Collapsing IEP categories into a single column #' #' Use: df <- EQAO_IEPrecode(df) #' #' Function determines whether the ISD data frame is grade 3, 6, 9 or 10 and creates a new IEPcode column of IEP labels #' Adapted from drsimonj'b blog post: https://drsimonj.svbtle.com/creating...
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chemin_rep_travail="C:\\0_ENCOURS\\TPM\\Erosion\\MobiTC_rivages" dirr=R.home() chem_mobitc=paste(dirr,"/Cerema/MOBITC",sep="") fichier_intersectionv1="20190517T152421-TPM-Sque-cont-Tra-P50-L0100sel-lisse-filtre3-mod-IntersTDC-v1.txt" fichier_sque="20190517T152421-TPM-Sque-cont" fichier_trace="20190517T152421-T...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mutPredict.snv.find.motif.R \name{mutPredict.snv.find.motif} \alias{mutPredict.snv.find.motif} \title{Extract nucleotide contexts for each site in SNV hotspots.} \usage{ mutPredict.snv.find.motif(seq, motifs) } \arguments{ \item{seq}{Datafram...
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################################################################################ # # Preping data functions # ################################################################################ #' parse columns from the link.values dataframe such that #' a separate column represents the influencing node type, influencing ...
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library(pastecs) ### Name: stat.pen ### Title: Pennington statistics on a data frame or time series ### Aliases: stat.pen ### Keywords: ts ### ** Examples data(marbio) stat.pen(marbio[,c(4, 14:16)], basic=TRUE, desc=TRUE)
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library(methylSig) par_methsig_benchmark <- function(methsig_cutoffs,methsig_qvals,locs,dfs,max_distance,min_CpG,methdiff,methdiff_cutoff){ #methsig_cutoffs<-c(0,0.1,0.2,0.3,0.4,0.5,0.6,0.7,0.8,0.9,1) #methsig_ROC <- matrix(data=0,nrow=2,ncol=length(methsig_cutoffs)) foreach(i=1:length(methsig_cutoffs),.combi...
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library(GenomicMating) ### Name: getGaSolutions ### Title: getGaSolutions ### Aliases: getGaSolutions Kmatfunc calculatecrossvalue getstatsM1 ### getstatsM2 getstatsM3 getstatsfromsim pairs3d par.name mapfunct ### par.position tails ### ** Examples ## Not run: ##D library(GenomicMating) ##D ##D ###Create 100 ...
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#' Time zone database version #' #' @description #' `zone_database_version()` returns the version of the time zone database #' currently in use. #' #' @return #' A single string of the database version. #' #' @export #' @examples #' zone_database_version() zone_database_version <- function() { zone_database_version_c...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/AlignQual.R \name{AlignQual} \alias{AlignQual} \title{AlignQual()} \usage{ AlignQual( Alignment_File_Name = "No Default", Reference_Length = "No Default", Read_Length = "No Default", server = F ) } \arguments{ \item{Alignment_File_Nam...
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#' The fence procedure for generalised linear models #' #' This function implements the fence procedure to #' find the best generalised linear model. #' #' @param mf an object of class \code{\link[stats]{glm}} #' specifying the full model. #' @param cstar the boundary of the fence, typically found #' through bootst...
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stepwise = function(train,test,name,y,crit) { train_temp <- train[,..name] if(y == 'single_price') { model <- lm(data.frame(train$single_price,train_temp)) colinear <- names(model$coefficients[which(is.na(model$coefficients))]) #print(typeof(colinear)) #train_temp <- data.frame(train_temp) train...
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## The object of this assignment is to cache the inverse of a matrix in ## order to call upon it later instead of recalculating it, resulting in a gain ## of time. The following two functions will do this. ## makeCacheMatrix creates a list containing a function to ## 1. set the value of the matrix ## 2. get the value...
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library(osmdata) library(raster) library() #### Define Area of Interest kenya <- getData('GADM', country='KEN', level=3) nairobi <- kenya[kenya$NAME_1 %in% "Nairobi",] #### OSM Prep q <- opq(bbox = nairobi %>% extent() %>% as.vector(), timeout = 9999) roads <- q %>% add_osm_feature(key = 'highway', value...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/character-vectors.R \name{verbatimize} \alias{verbatimize} \title{Verbatimize string} \usage{ verbatimize(x, sep = ", ") } \arguments{ \item{x}{Character vector to be encapsulated} \item{sep}{String; How pasted elements should be separated, ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/create-data.R \name{create_data_churn} \alias{create_data_churn} \title{Create data churn} \usage{ create_data_churn( obs = 1000, target_name = "churn", factorise_target = FALSE, target1_prob = 0.4, add_id = FALSE, seed = 123 ) } ...
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#Notebook criado para demonstracao de Listas #List str liststr = list('Bem-vindo', 'ao estudo', 'de R') liststr #Lista de inteiros listint = list(2, 3, 4) listint #Lista de floats floatlist = list(1.90, 45.3, 300.5) floatlist #Lista com numeros complexos compllist = list(5.2+3i, 2.4+8i) compllist #List com valo...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/apply_offset.R \name{apply_offset} \alias{apply_offset} \title{EITrans::apply_offset} \usage{ apply_offset(ens, offset, pre_sorted = F, verbose = F) } \arguments{ \item{ens}{A 4-dimensional array for ensemble forecasts. Dimensions should be \...
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library(Matrix) ## Matrix Exponential source(system.file("test-tools.R", package = "Matrix")) ## e ^ 0 = 1 - for matrices: assert.EQ.mat(expm(Matrix(0, 3,3)), diag(3), tol = 0)# exactly ## e ^ diag(.) = diag(e ^ .): assert.EQ.mat(expm(as(diag(-1:4), "dgeMatrix")), diag(exp(-1:4))) set.seed(1) rE <- replicate(100, ...
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library(shiny) source("helpers.R") # Define UI for application that draws a histogram ui <- fluidPage( # Application title titlePanel("Balancer Pools"), sidebarLayout( sidebarPanel( selectInput(inputId = 'type', label = 'Pool Type', cho...
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N=as.integer(readline("Enter Nth number")) C=c(1:N) print(sum(C))
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rm(list = ls()) library(tidyverse) library(raster) # Average of 17 years between 1992-2008 ---------------------------------- years <- 1992:2008 variables <- list.files("weather/single_year/1992")[1:10] %>% gsub(".asc", "", .) if (!"average" %in% list.files("weather")) dir.create("weather/average") pb <- txtP...
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# Load packages library(readxl) library(dplyr) library(stringr) library(ggplot2) library(plotly) library(shiny) library(DT) library(tidyverse) library(rstudioapi) current_path = getActiveDocumentContext()$path setwd(dirname(current_path)) # Read data TwoMan <- read_excel("data/LINEUP DATA.xlsx", sheet = "2Man") T...
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pdf('square-plot.pdf') T = as.matrix(read.table('square.Rdata')) boxplot.matrix(T[,2:101], use.cols=FALSE, xlab='Environmental stress level (phenotypic units/generation)', ylab='Number of autonomous transposons', names=format(T[,1]*0.002, scientific=FALSE), cex.lab=1.3) dev.off() pdf('perc-plot.pdf') v = T[,1] ...
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# # This is the user-interface definition of a Shiny web application. You can # run the application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # library(shiny) shinyUI(pageWithSidebar( headerPanel("Computing Without A C...
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library(shiny) library(datasets) # Define UI for miles per gallon application ui <- fluidPage ( pageWithSidebar( # Application title headerPanel("Miles Per Gallon"), # Sidebar with controls to select the variable to plot against mpg # and to specify whether outliers should be included sidebarPanel( ...
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\name{NISTukThUnthPerCubFtTOjoulePerCubMeter} \alias{NISTukThUnthPerCubFtTOjoulePerCubMeter} \title{Convert British thermal unitth per cubic foot to joule per cubic meter } \usage{NISTukThUnthPerCubFtTOjoulePerCubMeter(ukThUnthPerCubFt)} \description{\code{NISTukThUnthPerCubFtTOjoulePerCubMeter} converts from British ...
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## Read files #Activity activity <- read.table("C:\\Users\\ptocto\\Documents\\UCI HAR Dataset\\activity_labels.txt") #Features features <- read.table("C:\\Users\\ptocto\\Documents\\UCI HAR Dataset\\features.txt") # Train files xtrain <- read.table("C:\\Users\\ptocto\\Documents\\UCI HAR Dataset\\train\\X_train.txt"...
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# Load required library library(data.table) library(base) #setwd("C:\\coursera\\course4\\wk1\\project\\submit") # download zip file url <- "https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption.zip" zipName <- file.path(getwd(), "input_data.zip") download.file(url, zipName) unzip...
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# IST 718 - Final Project # Group 3 - Ha Nguyen - Jaydeep - Ye Xu # File: G3_loanAnalysis_ModelBuilding2.R # Purpose: Predict Good/Bad loan from lendingclub data # Pre-processing data # Run the file at working directory source("G3_loanAnalysis_PreProcess.R") # Output is transformed data loan3c_Reduced and...
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## ----eval=FALSE---------------------------------------------------------- # library("bmass"); # HDL <- read.table("jointGwasMc_HDL.formatted.QCed.txt.gz", header=T); # LDL <- read.table("jointGwasMc_LDL.formatted.QCed.HDLMatch.txt.gz", header=T); # TG <- read.table("jointGwasMc_TG.formatted.QCed.HDLMatch.txt.gz",...
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### Description ### This script reads and recodes data from the 2018-2020 MSPA National ### Needs-assessment of LGBTQ+ medical students in the United States. # Author: Timothy Keyes # Version: 2020-03-23 # Libraries library(tidyverse) # Parameters in_path <- here::here("data-raw", "mspa_na_raw.csv") names_path <- ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/FLtestLib.R \name{initFgeneric} \alias{initFgeneric} \title{initF.default helps to return a list of list. Can be used for comparing results of R and FL functions which require two objects.} \usage{ initFgeneric(specs = list(numberattribute = ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mgsm-psqn.R \name{make_mgsm_psqn_obj} \alias{make_mgsm_psqn_obj} \title{Create mgsm Object to Pass to psqn Method} \usage{ make_mgsm_psqn_obj( formula, data, df, tformula = NULL, Z, cluster, method = c("SNVA", "GVA"), n_nodes ...
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# # This is the user-interface definition of a Shiny web application. You can # run the application by clicking 'Run App' above. # # Find out more about building applications with Shiny here: # # http://shiny.rstudio.com/ # # Libraries required for the project library(shiny) library(ggplot2) library(tidyverse) # ca...
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#' Perform Post-Processing Using Default Bijections #' #' Performs Bayesian multimodel inference, estimating Bayes factors and #' posterior model probabilities for N candidate models. Unlike #' \code{\link{rjmcmcpost}}, this function uses a default bijection scheme based #' on approximating each posterior by a mult...
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# Load the Gross Domestic Product data for the 190 ranked countries in this data set: # https://d396qusza40orc.cloudfront.net/getdata%2Fdata%2FGDP.csv # Remove the commas from the GDP numbers in millions of dollars and average them. What is the average? # Original data sources: http://data.worldbank.org/data-cata...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/operators.R \name{divergence} \alias{divergence} \alias{\%divergence\%} \title{Numerical and Symbolic Divergence} \usage{ divergence( f, var, params = list(), coordinates = "cartesian", accuracy = 4, stepsize = NULL, drop = TRUE...
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## Auto-Install the following packages .packs <- c("ggplot2", "tabulizer", "dplyr", "stringr", "rvest", "hrbrthemes", "scales", "tidyr", "directlabels", "readxl", "readr", "ggrepel", "mgcv", "tidybayes", "tsibble", "lubridate", "forcats") .success <- suppressWarnings(sa...
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library(shiny) library(shinythemes) library(highcharter) library(readr) library(dplyr) library(tidyr) library(tibble) library(forcats) require(readxl) require(stringr) require(data.table) library(rlist) ## input data #rm(list=ls()) # remove all vars #rm(list = setdiff(ls(), lsf.str())) remove all variables except fun...
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library(shiny) library(viridis) library(shinyCanvas) library(dplyr) data=data.frame(x=1:1000,y=1:1000) concaveman <- function(d){ library(V8) ctx <- v8() ctx$source('https://www.mapbox.com/bites/00222/concaveman-bundle.js') jscode <- sprintf( "var points = %s;var polygon = concaveman(points);", jsonl...
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#--------------------------------------# # ACTIVATION DES LIRAIRIES NECESSAIRES # #--------------------------------------# attach(input[[1]]) needs(e1071) needs(ROCR) #-------------------------# # PREPARATION DES DONNEES # #-------------------------# setwd('data') data <- read.csv("dataset.csv", header = TRUE, sep = ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/pedigree.format.R \name{pedigree.format.genedrop} \alias{pedigree.format.genedrop} \title{Format Pedigree for genedrop analysis} \usage{ pedigree.format.genedrop(ped) } \arguments{ \item{ped}{Pedigree object. Run simple.ped.name.rules() for a...
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\name{Hill.2oQV} \alias{Hill.2oQV} \title{ Bias-reduced MLE (Quantile view) } \description{ Computes bias-reduced ML estimates of gamma based on the quantile view. } \usage{ Hill.2oQV(data, start = c(1,1,1), warnings = FALSE, logk = FALSE, plot = FALSE, add = FALSE, main = "Estimates of the EVI", ...) } %- ...
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shinyServer(function(input, output, session) { output$user_name_input_ui = renderUI({ queried_user = parseQueryString(session$clientData$url_search)[["user"]] default_user = if (is.null(queried_user)) DEFAULT_USER else queried_user div( textInput( inputId = "user_name_input", label...
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library(caret) abalone <- read.csv(url("http://archive.ics.uci.edu/ml/machine-learning-databases/abalone/abalone.data"), header=FALSE) names(abalone) <- c("sex","length","diameter","height","whole_wt","shuck_wt","visc_wt","shell_wt","rings") abalone$rings <- as.factor(abalone$rings) fit <- train(rin...
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## Takes a matrix as input, calculates the inverse and caches its value. ## If inverse has already been calculate, retrieves value from cache. ## If inverse has not already been calculated, computes, returns, and caches inverse ## MakeCacheMatrix creates a special matrix of functions that ## Set the value of matrix ##...
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Sys.setlocale("LC_ALL", "C") #Read in the data #Please make sure that the household_power_consumption.txt file is in your working directory hcp <- read.table("household_power_consumption.txt", header = TRUE, sep = ";", na.strings = "?") #Convert the Date variable into date class hcp$Date <- as.character(hcp$Date) hc...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/functions_of_measures.R \name{bin_mean} \alias{bin_mean} \title{bin_mean} \usage{ bin_mean(trials, prob) } \arguments{ \item{trials}{number of trials} \item{prob}{value of head probability} } \value{ computed mean value } \description{ calcu...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/NMFSet-class.R \docType{methods} \name{minfit,NMFfitXn-method} \alias{minfit,NMFfitXn-method} \title{Returns the best NMF model in the list, i.e. the run that achieved the lower estimation residuals.} \usage{ \S4method{minfit}{NMFfitXn}(obje...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/runStereogeneOnCapR.R \name{runStereogeneOnCapR} \alias{runStereogeneOnCapR} \title{runStereogeneOnCapR} \usage{ runStereogeneOnCapR( dir_CapR_bg = ".", input_prefix, protein_file, output_prefix = input_prefix, name_config = "config...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mutate_variables.R \name{mutate_variables} \alias{mutate_variables} \alias{mutate_variables.draws_matrix} \alias{mutate_variables.draws_array} \alias{mutate_variables.draws_df} \alias{mutate_variables.draws_list} \alias{mutate_variables.draws...
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setwd("C:/Users/fkaus/OneDrive/바탕 화면/데이터캠퍼스 프로젝트/데이터") cor.buy.car<- read.csv("소득수준상관관계.csv",header=T) head(cor.buy.car) # -0.0748 # 약한 음의 관계 거의 의미가 없다. cor(cor.buy.car$소득수준,cor.buy.car$수소차) # p-value:0.7829 # alternative hypothesis: true correlation is not equal to 0 cor.test(cor.buy.car$소득수준,cor.buy.car$수소차) c...
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setwd("/media/ducdo/UUI/Bioinformatics/Summer Research/Cancer_Survival/encRNA_methylation_260616") source("/media/ducdo/UUI/Bioinformatics/Summer Research/Cancer_Survival/encRNA_methylation_260616/code_correlation_analysis/helper_functions.R") load("data_Saved_R_Objects/corr_matrices/normal_tumor_encRNA_triplets.rda") ...
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setClass("StructTypeWithNames", representation(names = "character"), contains = "StructType") setClass("DoubleType", contains = "Type") #XXX Not in LLVM # A separate class so we can identify a StringType from a generic pointer since now they both use i8* setClass("StringType", contains = "Type") # R specific type...
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# plot composition of fisheries # S1 # species table library(reshape2) library(dplyr) tickets <- readRDS("/Users/efuller/Desktop/CNH/Analysis/Metiers/bin/04_data_output/vessel_landings_data.RDS") met_summary <- tickets %>% group_by(metier.2010, modified) %>% summarize(revenue = sum(adj_revenue, na.rm = T)) %>% gr...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/exportInstruments.R \name{exportInstruments} \alias{exportInstruments} \alias{exportInstruments.redcapApiConnection} \title{Exports the REDCap Instruments} \usage{ exportInstruments(rcon, ...) \method{exportInstruments}{redcapApiConnection}(...
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#---------STATIONARY------------# frozen_matern_cov_parapply <- function(wind, max_time_lag = 1, q = 2, LOCS = locs_demean, theta = space_params){ ################### ################### ################### RETURNS a q * nrow(LOCS) * (max_time_lag + 1) x q * nrow(LOCS) * (max_time_lag + 1) matrix #######...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/read.settings.R \name{read.settings} \alias{read.settings} \title{Loads PEcAn settings file} \usage{ read.settings(inputfile = "pecan.xml") } \arguments{ \item{inputfile}{the PEcAn settings file to be used.} } \value{ list of all settings as ...
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\name{Find element} \alias{is_element} \title{ Find element } \description{ Search a value in an unordered vector. } \usage{ is_element(x, key) } \arguments{ \item{x}{ A vector or matrix with the data. } \item{key}{ A value to check if exists in the vector x. } } \details{ Find if the key ex...
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library(shiny) library(ggmap) library(dplyr) library(leaflet) library(revgeo) ###Load data### bus_count = read.csv('/Users/MacBook/Desktop/Data/bus_count.csv') subway_count = read.csv('/Users/MacBook/Desktop/Data/subway_count.csv') bus_stops = read.csv('/Users/MacBook/Desktop/Data/bus_stops.csv') subway_stops = read...
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########################### SET SIMULATION PARAMETERS MATRIX ########################### # FOR CLUSTER USE path = "/share/PI/manishad/multTest" setwd(path) # FOR LOCAL USE # path = "~/Dropbox/Personal computer/HARVARD/THESIS/Thesis paper #2 (MO)/Sandbox/2018-1-13" # setwd(path) n = 1000 nX = 1 nY = 40 rho.XX = 0 r...
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# R Project Review # get directory getwd() # reset directory setwd('Documents/Programming/R_Project/R_Basic_ggplot/') # list files/directories in a directory list.files() setwd('..') # set directory to the parent one list.dirs() # reset to what we want setwd('R_Basic_ggplot/') # list all items in current global environ...
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#' @importFrom easyassertions assert_is_data.table_with_required_names check_nordcan_cancer_case_dataset <- function( x, check_col_nms = nordcancore::nordcan_col_nms() ) { nordcancore::assert_is_set_of_nordcan_col_nms(test_col_nms) easyassertions::assert_is_data.table_with_required_names( x, requir...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/utility_functions.R \name{plot_matrix} \alias{plot_matrix} \title{Just plot a matrix without rotating it} \usage{ plot_matrix(mat, logs = TRUE, low_triangular = FALSE) } \arguments{ \item{mat}{a matrix} \item{logs}{do you want to plot in log...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/getData4haemkrt.R \name{getData4haemkrt} \alias{getData4haemkrt} \title{Get data on haematocrit.} \usage{ getData4haemkrt(FRM_DIL_LABORWERTE) } \arguments{ \item{FRM_DIL_LABORWERTE}{data.table containing the table FRM_DIL_LABORWERTE from the ...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/parse-LI8100.R \name{parse_PROCESSED_CSV} \alias{parse_PROCESSED_CSV} \title{Read processed data in CSV format} \usage{ parse_PROCESSED_CSV(path) } \arguments{ \item{path}{Data directory path, character} } \value{ A data frame with all data r...
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# Calculate path offset and its max .packageName <- 'mousetrack' pathoffset <- function(x,y){ # require("pracma") ## to compute the vector cross-product startend = c( (y[length(y)] - y[1]), (x[length(x)] - x[1])) startenddistance = sqrt(sum(startend^2)) perpdistance = vector() for (m in 1:lengt...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/verhoeff.R \name{verhoeff_validate} \alias{verhoeff_validate} \title{verhoeff_validate} \usage{ verhoeff_validate(number, check_digit) } \arguments{ \item{number}{A numerical input} \item{check_digit}{An existing check digit for the input nu...
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library(shiny) shinyUI(fluidPage( titlePanel(title = h4("Tutorial 20", align = "center")), sidebarLayout( sidebarPanel( selectInput(inputId = "Year", label = "Year", choices = unique(data$Year)), # The choices are conditional, so it is empty for now. sele...
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shinyUI(pageWithSidebar( headerPanel("ggvis plot"), sidebarPanel( uiOutput("ggvis_ui"), ggvisControlGroup("plot1") ), mainPanel( ggvis_output("plot1"), ggvis_output("plot2"), h3("Hover data (sent from client to server)"), verbatimTextOutput("hover_data") ) ))
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##' Import European Environment Agency airbase hourly air quality data ##' ##' The European Environment Agency (EEA) makes available hourly air ##' pollution data from across Europe (see ##' \url{http://acm.eionet.europa.eu/databases/airbase/}). The EEA go ##' to great lengths to compile, check and make available a hug...
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library(chron) library(ggplot2) energyDf <- read.delim("~/exploratory_data_analysis_wk1/household_power_consumption.txt", stringsAsFactors = FALSE, sep = ";") energyDf$Date <- as.Date(energyDf$Date, format = "%d/%m/%Y") energyDfSubset <- as.data.table(energyDf)[Date >= "2007-02-01" & Date <= "2007-02-02"] energyDfSub...
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function (A, B, p) { e <- get("data.env", .GlobalEnv) e[["rcpp_kronDBS"]][[length(e[["rcpp_kronDBS"]]) + 1]] <- list(A = A, B = B, p = p) invisible(c(".Call", "_CGGP_rcpp_kronDBS", "CGGP", "A", "B", "p")) }
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# load relevant packages library(STRINGdb) library(igraph) library(ggplot2) library(ggnetwork) library(dplyr) library(glue) library(devtools) # load all package functions load_all() # read differential expression data (annotated with gene symbols) de_string <- readRDS('data/de_string_v11.RDS') # select MYC condition...
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library('magrittr') romeo = readLines("http://www.gutenberg.org/cache/epub/1112/pg1112.txt", encoding = "UTF8") romeo %<>% {.[. != ""]} first_line = which(romeo[1:100] == "1595") romeo = romeo[-1:-first_line] persons = romeo[4:28] corpus = romeo[-1:-32] library(stringr) corpus[1:4] %>% print() %>% str_length()...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/mean_beta.R \name{mean_beta} \alias{mean_beta} \title{mean_beta} \usage{ mean_beta(betaobj, testvals, brange = c(0, 1)) } \arguments{ \item{betaobj}{betamle object} \item{testvals}{vector} \item{brange}{vector} } \value{ vector } \descripti...
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plp <- function (x){ m <- dim(x)[1] n <- dim(x)[2] control <- lp.control(x) cat(paste("Model name: ", name.lp(x), "\n", sep = "")) ans <- matrix(0, m + 1, n) for(j in 1:n) { col <- get.column(x, j) col$column -> ans[1 + col$nzrow, j] } type <- get.type(x); ...
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icae_cols <- c("#696969", "#888888", "#A0A0A0", "#B0B0B0", "#C8C8C8", "#D8D8D8") #' Clustering #' #' Conducts the clustering #' #' @param data_file The file for the clustering, must not contain NA #' @param clustering_vars Should contain all the variables to be used #' in the clustering as strings ...
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testlist <- list(rates = numeric(0), thresholds = c(NaN, 3.56048348188083e-306, 34082834.0004893, NaN, 2.80614289249855e-312, -2.2308331518689e-289, 1.67616711008101e-319, 0, 0, 9.72926582174422e-309, 2.84809453888922e-306, 2.84347436052587e-312, 2.47222686857108e-94, 3.5601616320854e-306, 8.90029544463878e-306, -2...
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#rm(list=ls()) # Sample usage draw_circle: # n <- 100 # r <- 40 # center <- c(50, 100) # width <- 10 # draw_circle(n, r, center, width) draw_circle <- function(n, r, center, width) { # draw a circle with noise rads <- runif(n, min=0, max=2*pi) rr <- runif(n, r - (width/2), r + (width/2)) samples <- matrix(0, n...
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#' Framework 7 searchbar #' #' Searchbar to filter elements in a page. #' #' @param id Necessary when using \link{f7SearchbarTrigger}. NULL otherwise. #' @param placeholder Searchbar placeholder. #' @param expandable Whether to enable the searchbar with a target link, #' in the navbar. See \link{f7SearchbarTrigger}. #'...
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library("data.table") # Download source data download.file("https://d396qusza40orc.cloudfront.net/exdata%2Fdata%2Fhousehold_power_consumption.zip", destfile = paste(getwd(),"data.zip", sep="/")) unzip("data.zip") #Reads the text file hpcTable <- data.table::fread(input = "household_power_consumption.txt", na.strings=...
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CSV.loc ="~/Studentship/ManDrought/thirdset.csv" GIS.loc ="~/Studentship/ManDrought/GIS" title ="Age"
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################################ # This file performs group stats - repeated measure ANOVA # load gpData_v1.Rda (gpM1-gpM3, workerIdList) # ################################ rm(list=ls()) library(tidyverse) library(ez) # ezANOVA currentDir <- getwd() setwd(currentDir) load("step1_allData_v1.Rda") catVblList <- c(...
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% Generated by roxygen2: do not edit by hand % Please edit documentation in R/BrewerySocialaccount.R \name{getEveryBrewerySocialaccount} \alias{getEveryBrewerySocialaccount} \title{Get All Social Accounts For Brewery} \usage{ getEveryBrewerySocialaccount(breweryId) } \arguments{ \item{breweryId}{The breweryId} } \value...
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############### SYNOPSIS ################### ### AIM: Mousebrain BMI geneset cell-type enrichment ### OUTPUT: # .... ### REMARKS: # .... ### REFERENCE: # ======================================================================= # # ================================ SETUP ================================ # # ========...
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setwd("C:/Users/Hayes/Desktop/BDS 005/Projects/Project 3") library(ggplot2) library(dplyr) boardgames = read.csv('boardgames.csv') str(boardgames) View(boardgames) boardgames$age = factor(boardgames$age, levels = c("[]", "[3+]", "[4+]","[5+]","[6+]", "[7+]","[8+]","[...