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Datasets:
plantcad
/
genecad-dev

Tasks:
Token Classification
Text Generation
Tags:
genomics
gene-prediction
plants
animals
License:
Dataset card Files
xet
 Community
zongyanliu commited on
Commit
7d85e68
·
1 Parent(s): c844d6a

modify file structure and add animal data

Browse files
Files changed (47) hide show
  1. data/animal/fasta/evaluation/Callithrix_jacchus.mCalJac1.pat.X.dna.toplevel.fa.gz +3 -0
  2. data/animal/fasta/evaluation/Oryzias_latipes_hni.ASM223471v1.dna.toplevel.fa +3 -0
  3. data/animal/fasta/training/Danio_rerio.GRCz11.dna.toplevel.fa.gz +3 -0
  4. data/animal/fasta/training/Gallus_gallus.bGalGal1.mat.broiler.GRCg7b.dna.toplevel.fa.gz +3 -0
  5. data/animal/fasta/training/Homo_sapiens.GRCh38.dna.toplevel.fa.gz +3 -0
  6. data/animal/fasta/training/Mus_musculus.GRCm39.dna.toplevel.fa.gz +3 -0
  7. data/animal/fasta/training/Xenopus_tropicalis.UCB_Xtro_10.0.dna.toplevel.fa.gz +3 -0
  8. data/{gff/predictions/precision-optimized/predictions_carabica.gff → animal/gff/evaluation/Callithrix_jacchus.mCalJac1.pat.X.115.chr.gff3.gz} +2 -2
  9. data/{gff/predictions/precision-optimized/predictions_jregia.gff → animal/gff/evaluation/Oryzias_latipes_hni.ASM223471v1.115.gff3.gz} +2 -2
  10. data/{gff/predictions/precision-optimized/predictions_nsylvestris.gff → animal/gff/training/Danio_rerio.GRCz11.115.chr.gff3.gz} +2 -2
  11. data/{gff/predictions/precision-optimized/predictions_ntabacum.gff → animal/gff/training/Gallus_gallus.bGalGal1.mat.broiler.GRCg7b.115.chr.gff3.gz} +2 -2
  12. data/animal/gff/training/Homo_sapiens.GRCh38.115.chr.gff3.gz +3 -0
  13. data/animal/gff/training/Mus_musculus.GRCm39.115.chr.gff3.gz +3 -0
  14. data/animal/gff/training/Xenopus_tropicalis.UCB_Xtro_10.0.115.chr.gff3.gz +3 -0
  15. data/gff/predictions/precision-optimized/predictions_pvulgaris.gff +0 -3
  16. data/gff/predictions/precision-optimized/predictions_zmays.gff +0 -3
  17. data/gff/predictions/recall-optimized/predictions_carabica.gff +0 -3
  18. data/gff/predictions/recall-optimized/predictions_jregia.gff +0 -3
  19. data/gff/predictions/recall-optimized/predictions_nsylvestris.gff +0 -3
  20. data/gff/predictions/recall-optimized/predictions_ntabacum.gff +0 -3
  21. data/gff/predictions/recall-optimized/predictions_pvulgaris.gff +0 -3
  22. data/gff/predictions/recall-optimized/predictions_zmays.gff +0 -3
  23. data/{fasta → plant/fasta}/evaluation/Coffea_arabica_chr1.fa.gz +0 -0
  24. data/{fasta → plant/fasta}/evaluation/Juglans_regia_chr1.fa.gz +0 -0
  25. data/{fasta → plant/fasta}/evaluation/Nicotiana_sylvestris_chr1.fa.gz +0 -0
  26. data/{fasta → plant/fasta}/evaluation/Nicotiana_tabacum_chr1.fa.gz +0 -0
  27. data/{fasta → plant/fasta}/evaluation/Phaseolus_vulgaris_chr1.fa.gz +0 -0
  28. data/{fasta → plant/fasta}/evaluation/Setaria_viridis_chr1.fa.gz +0 -0
  29. data/{fasta → plant/fasta}/evaluation/Zea_mays_chr1.fa.gz +0 -0
  30. data/{fasta → plant/fasta}/example/GCA_978657495.1_TAIR12_genomic_5.fa.gz +0 -0
  31. data/{fasta → plant/fasta}/training/Athaliana_447_TAIR10.fa.gz +0 -0
  32. data/{fasta → plant/fasta}/training/Gmax_880_v6.0.fa.gz +0 -0
  33. data/{fasta → plant/fasta}/training/Hvulgare_462_r1.fa.gz +0 -0
  34. data/{fasta → plant/fasta}/training/Osativa_323_v7.0.fa.gz +0 -0
  35. data/{fasta → plant/fasta}/training/Ptrichocarpa_533_v4.0.fa.gz +0 -0
  36. data/{gff → plant/gff}/evaluation/Coffea_arabica_chr1.gff3 +0 -0
  37. data/{gff → plant/gff}/evaluation/Juglans_regia_chr1.gff3 +0 -0
  38. data/{gff → plant/gff}/evaluation/Nicotiana_sylvestris_chr1.gff3 +0 -0
  39. data/{gff → plant/gff}/evaluation/Nicotiana_tabacum_chr1.gff3 +0 -0
  40. data/{gff → plant/gff}/evaluation/Phaseolus_vulgaris_chr1.gff3 +0 -0
  41. data/{gff → plant/gff}/evaluation/Setaria_viridis_chr1.gff3 +0 -0
  42. data/{gff → plant/gff}/evaluation/Zea_mays_chr1.gff3 +0 -0
  43. data/{gff → plant/gff}/training/Athaliana_top_transcript.gff3 +0 -0
  44. data/{gff → plant/gff}/training/Gmax_top_transcript.gff3 +0 -0
  45. data/{gff → plant/gff}/training/Hvulgare_top_transcript.gff3 +0 -0
  46. data/{gff → plant/gff}/training/Osativa_top_transcript.gff3 +0 -0
  47. data/{gff → plant/gff}/training/Ptrichocarpa_top_transcript.gff3 +0 -0
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data/{gff/predictions/precision-optimized/predictions_carabica.gff → animal/gff/evaluation/Callithrix_jacchus.mCalJac1.pat.X.115.chr.gff3.gz} RENAMED
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data/{gff/predictions/precision-optimized/predictions_jregia.gff → animal/gff/evaluation/Oryzias_latipes_hni.ASM223471v1.115.gff3.gz} RENAMED
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data/{fasta → plant/fasta}/evaluation/Coffea_arabica_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Juglans_regia_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Nicotiana_sylvestris_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Nicotiana_tabacum_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Phaseolus_vulgaris_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Setaria_viridis_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/evaluation/Zea_mays_chr1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/example/GCA_978657495.1_TAIR12_genomic_5.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/training/Athaliana_447_TAIR10.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/training/Gmax_880_v6.0.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/training/Hvulgare_462_r1.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/training/Osativa_323_v7.0.fa.gz RENAMED
File without changes
data/{fasta → plant/fasta}/training/Ptrichocarpa_533_v4.0.fa.gz RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Coffea_arabica_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Juglans_regia_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Nicotiana_sylvestris_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Nicotiana_tabacum_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Phaseolus_vulgaris_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Setaria_viridis_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/evaluation/Zea_mays_chr1.gff3 RENAMED
File without changes
data/{gff → plant/gff}/training/Athaliana_top_transcript.gff3 RENAMED
File without changes
data/{gff → plant/gff}/training/Gmax_top_transcript.gff3 RENAMED
File without changes
data/{gff → plant/gff}/training/Hvulgare_top_transcript.gff3 RENAMED
File without changes
data/{gff → plant/gff}/training/Osativa_top_transcript.gff3 RENAMED
File without changes
data/{gff → plant/gff}/training/Ptrichocarpa_top_transcript.gff3 RENAMED
File without changes