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Datasets:
plantcad
/
genecad-dev

Tasks:
Token Classification
Text Generation
Tags:
genomics
gene-prediction
plants
animals
License:
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 Community
zongyanliu commited on
Commit
c844d6a
·
1 Parent(s): df74284

Standardise dataset: compress all FASTA to .fa.gz, clean names, remove duplicates

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  1. .gitattributes +1 -0
  2. data/example_outputs/precision-optimized/predictions_carabica.gff +0 -0
  3. data/example_outputs/precision-optimized/predictions_jregia.gff +0 -0
  4. data/example_outputs/precision-optimized/predictions_nsylvestris.gff +0 -0
  5. data/example_outputs/precision-optimized/predictions_ntabacum.gff +0 -0
  6. data/example_outputs/precision-optimized/predictions_pvulgaris.gff +0 -0
  7. data/example_outputs/precision-optimized/predictions_zmays.gff +0 -0
  8. data/example_outputs/recall-optimized/predictions_carabica.gff +0 -0
  9. data/example_outputs/recall-optimized/predictions_jregia.gff +0 -0
  10. data/example_outputs/recall-optimized/predictions_nsylvestris.gff +0 -0
  11. data/example_outputs/recall-optimized/predictions_ntabacum.gff +0 -0
  12. data/example_outputs/recall-optimized/predictions_pvulgaris.gff +0 -0
  13. data/example_outputs/recall-optimized/predictions_zmays.gff +0 -0
  14. data/fasta/Nicotiana_tabacum_genome.fa.gz +0 -3
  15. data/fasta/Phaseolus_vulgaris-2.0.2_chr1.fasta +0 -3
  16. data/fasta/Sviridis_726_v4.0.fa +0 -3
  17. data/fasta/{Nicotiana_tabacum_genome_chr1.fa.gz → evaluation/Coffea_arabica_chr1.fa.gz} +2 -2
  18. data/fasta/{GCA_978657495.1_TAIR12_genomic_5.fna → evaluation/Juglans_regia_chr1.fa.gz} +2 -2
  19. data/fasta/{Nicotiana_sylvestris_genome_chr1_clean.fa.gz → evaluation/Nicotiana_sylvestris_chr1.fa.gz} +0 -0
  20. data/fasta/{Nicotiana_tabacum_genome_chr1_clean.fa.gz → evaluation/Nicotiana_tabacum_chr1.fa.gz} +0 -0
  21. data/fasta/{Juglans_regia.Walnut_2.0.dna.toplevel_chr1.fa → evaluation/Phaseolus_vulgaris_chr1.fa.gz} +2 -2
  22. data/fasta/{Coffea_arabica_geisha.final_chr1.fasta → evaluation/Setaria_viridis_chr1.fa.gz} +2 -2
  23. data/fasta/{Zea_mays-B73-REFERENCE-NAM-5.0.fa.gz → evaluation/Zea_mays_chr1.fa.gz} +0 -0
  24. data/fasta/{Nicotiana_sylvestris_genome_chr1.fa.gz → example/GCA_978657495.1_TAIR12_genomic_5.fa.gz} +2 -2
  25. data/fasta/training/Athaliana_447_TAIR10.fa +0 -3
  26. data/fasta/training/Athaliana_447_TAIR10.fa.gz +3 -0
  27. data/fasta/training/Gmax_880_v6.0.fa +0 -3
  28. data/fasta/training/Gmax_880_v6.0.fa.gz +3 -0
  29. data/fasta/training/Osativa_323_v7.0.fa +0 -3
  30. data/fasta/training/Osativa_323_v7.0.fa.gz +3 -0
  31. data/gff/Coffea_arabica_geisha.annotation.gff3 +0 -3
  32. data/gff/Juglans_regia.Walnut_2.0.60.gff3 +0 -3
  33. data/gff/Phaseolus_vulgaris-2.0.2_chr1.gff +0 -0
  34. data/gff/Pvulgaris.Annotation-EGN-EP-2.0.2.gff +0 -3
  35. data/gff/Zea_mays-B73-REFERENCE-NAM-5.0_Zm00001eb.1.gff3.gz +0 -3
  36. data/gff/{Coffea_arabica_geisha.annotation_chr1.gff3 → evaluation/Coffea_arabica_chr1.gff3} +0 -0
  37. data/gff/{Juglans_regia.Walnut_2.0.60_chr1.gff3 → evaluation/Juglans_regia_chr1.gff3} +0 -0
  38. data/gff/{Nicotiana_sylvestris_annotation.gff3 → evaluation/Nicotiana_sylvestris_chr1.gff3} +0 -0
  39. data/gff/{Nicotiana_tabacum_annotation.gff3 → evaluation/Nicotiana_tabacum_chr1.gff3} +0 -0
  40. data/gff/evaluation/Phaseolus_vulgaris_chr1.gff3 +3 -0
  41. data/gff/{Sviridis_726_v4.1.gene.gff3 → evaluation/Setaria_viridis_chr1.gff3} +0 -0
  42. data/gff/{Zea_mays-B73-REFERENCE-NAM-5.0_Zm00001eb.1.gff3 → evaluation/Zea_mays_chr1.gff3} +0 -0
  43. data/gff/predictions/precision-optimized/predictions_carabica.gff +3 -0
  44. data/gff/predictions/precision-optimized/predictions_jregia.gff +3 -0
  45. data/gff/predictions/precision-optimized/predictions_nsylvestris.gff +3 -0
  46. data/gff/predictions/precision-optimized/predictions_ntabacum.gff +3 -0
  47. data/gff/predictions/precision-optimized/predictions_pvulgaris.gff +3 -0
  48. data/gff/predictions/precision-optimized/predictions_zmays.gff +3 -0
  49. data/gff/predictions/recall-optimized/predictions_carabica.gff +3 -0
  50. data/gff/predictions/recall-optimized/predictions_jregia.gff +3 -0
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  *.gff3 filter=lfs diff=lfs merge=lfs -text
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