plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | lcnbeapp/beapp-master | om_normals.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/openmeeg/om_normals.m | 1,572 | utf_8 | ca0342ba8f9473f946c7df879e4a82c8 | function [nrm] = normals(pos, tri, opt)
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% Use as
% nrm = normals(pos, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
if nargin<3
opt='vertex';
elseif (opt(1)=='... |
github | lcnbeapp/beapp-master | normals.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/openmeeg/private/normals.m | 2,346 | utf_8 | fc0a8ff8ded57a42b7f5436338ed6788 | function [nrm] = normals(pnt, tri, opt);
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% [nrm] = normals(pnt, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.... |
github | lcnbeapp/beapp-master | dipoli.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/dipoli/dipoli.m | 4,457 | utf_8 | f2e2fe3dbd61e25b90d68adb9202f375 | function [vol] = dipoli(vol, isolated)
% DIPOLI computes a BEM system matrix
%
% Use as
% [vol] = dipoli(vol, isolated)
% Copyright (C) 2005-2008, Robert Oostenveld
%
% $Log: dipoli.m,v $
% Revision 1.3 2008/12/24 10:25:41 roboos
% cleaned up the dipoli wrapper, replaced the binary by a better one and added a cop... |
github | lcnbeapp/beapp-master | scpopen.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/biosig/private/scpopen.m | 57,392 | utf_8 | efe5be2dea8235810f4b98539abfdbd1 | function [HDR]=scpopen(arg1,CHAN,arg4,arg5,arg6)
% SCPOPEN reads and writes SCP-ECG files
%
% SCPOPEN is an auxillary function to SOPEN for
% opening of SCP-ECG files for reading ECG waveform data
%
% Use SOPEN instead of SCPOPEN
%
% See also: fopen, SOPEN,
% $Id$
% (C) 2004,2006,2007,2008 by Alois Schloegl <a... |
github | lcnbeapp/beapp-master | openxml.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/biosig/private/openxml.m | 13,850 | utf_8 | a2522f85226716568c1d40ee7e6666f6 | function [HDR]=openxml(arg1,CHAN,arg4,arg5,arg6)
% OPENXML reads XML files and tries to extract biosignal data
%
% This is an auxilary function to SOPEN.
% Use SOPEN instead of OPENXML.
%
%
% HDR = openxml(HDR);
%
% HDR contains the Headerinformation and internal data
%
% see also: SOPEN, SREAD, SSEEK, STELL, SCLOSE,... |
github | lcnbeapp/beapp-master | matread.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/biosig/private/matread.m | 10,217 | utf_8 | 0c42f4955d1ed526f04022f79b06fd87 | function [HDR,data,t]=matread(HDR,arg2,idxlist)
% MATRREAD Loads (parts of) data stored in Matlab-format
%
% [HDR,data,timeindex]=matread(HDR,block_number, [startidx, endidx])
% This is the recommended use for Matlab-files generated from ADICHT data
% Before using MATREAD, HDR=MATOPEN(filename, 'ADI', ...) must be app... |
github | lcnbeapp/beapp-master | GE_createSPMmat.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/GE_createSPMmat.m | 1,480 | utf_8 | 9da4628d724922838247f14727e25722 | %%%%%%%%%%%%%%%%%%%%%%%%
% %
% Write SPM mat file %
% %
%%%%%%%%%%%%%%%%%%%%%%%%
function M = GE_createSPMmat(im_hdr, scandir)
%
% Put the appropriate translations and rotations to the M matrix
% given the information in the image header and the direction of
% acquisition
%
%... |
github | lcnbeapp/beapp-master | NewCs.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/NewCs.m | 20,018 | utf_8 | 02f4f3b94b14be6adab8ee52224b2dc3 | function [cs] = NewCs(Name, win, p1, p2, p3, p4, p5)
%
% [cs] = NewCs (Name, Con, P1, P2)
%
%Purpose:
% Create a command structure for passing to TellAfni
%
%
%Input Parameters:
% Name: Name of command, see AFNI's README.driver for all possibilities
% Example: SET_THRESHOLD
% To see a list ... |
github | lcnbeapp/beapp-master | New_HEAD.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/New_HEAD.m | 8,432 | utf_8 | 3213a4c8b09f49855cafdf9925e5b3d3 | function [err,Info, opt] = New_HEAD (opt)
%
% [err,Info, Opt] = New_HEAD (Opt)
%
%Purpose:
% A function for the likes of Greg Detre.
% It makes the creation of an AFNI dataset
% from a 3 or 4 dimensional matrix in matlab a breeze.
%
%
%
%Input Parameters:
% opt is an options structure with the follow... |
github | lcnbeapp/beapp-master | PeakFinder.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/PeakFinder.m | 13,081 | utf_8 | 2f79a40d4194ae7e9ad3a34c87589a80 | function [R, e] = PeakFinder(vvec, Opt)
%Example: PeakFinder('Resp*.1D');
% or PeakFinder(v) where v is a column vector
% if v is a matrix, each column is processed separately.
%
%clear all but vvec (useful if I run this function as as script)
keep('vvec', 'Opt');
e = 0;
R = struct([]);
if (nargin < 2) Opt = struct();... |
github | lcnbeapp/beapp-master | rgbdectohex.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/rgbdectohex.m | 6,032 | utf_8 | fca22486bef72eb78e71977479b7940b | function [Cs] = rgbdectohex (Mrgb,strg)
%
% Mode 1:
% [Cs] = rgbdectohex (Mrgb,[string])
% Mode 2:
% rgbdectohex
%
% Mode 1:
%This function takes as an input the rgb matrix Mrgb (size is Nx3)
% where each row represents the rgb gun values of a color.
% gun values should be integers between 0 and 255
%
... |
github | lcnbeapp/beapp-master | afni_niml_writesimple.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_niml_writesimple.m | 4,503 | utf_8 | 231807f9346f2bfcc56fa5f3eda8ff00 | function D=afni_niml_writesimple(S,fn)
% writes surface data in a 'simple' struct in NIML format to a file.
%
% D=AFNI_NIML_WRITESIMPLE(fn,S) writes surface data S to the file FN.
% S should be a struct with a field S.data, and optionally S.stats,
% S.labels, S.history, S.types, and S.node_indices.
% This function ret... |
github | lcnbeapp/beapp-master | zglobb.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/zglobb.m | 3,946 | utf_8 | 508195b45ee39c7296447826b75515f4 | function [err,ErrMessage, NameList] = zglobb (Identifiers, Opt)
%
% [err, ErrMessage, List] = zglobb (Identifiers, [Opt])
%or
% [List] = zglobb (Identifiers, [Opt])
%Purpose:
% returns the list of files specified in Identifiers
%
%
%Input Parameters:
% Identifiers is a cellstr identifying which briks to ... |
github | lcnbeapp/beapp-master | afni_niml_parse.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_niml_parse.m | 4,013 | utf_8 | 928c1d463779f609cd8549cfec5a0a37 | function niml = afni_niml_parse(s)
% Simple parsing routine for AFNI NIML datasets
%
% N=AFNI_NIML_PARSE(S) parses the niml string S and returns a parsed
% structure P.
%
% P can either be an niml element, or a group of niml elements. In the
% formder case, P contains a field .data; in the latter, a cell .nodes.
%
% If... |
github | lcnbeapp/beapp-master | afni_fig_interface.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_fig_interface.m | 3,035 | utf_8 | a6e27aaa75a4fe2aebabe4db5d20acfb | function afni_fig_interface(src, evnt)
cf = gcf;
figure(src);
% evnt
ud = get(src,'UserData');
if (isempty(ud) | ~isfield(ud,'axes_lock')),
ud = default_ud();
set(src,'UserData',ud);
end
if ( lower(evnt.Character) == 'l' ),
ud.axes_lock = ~ud.axes_lock;
set (src,'UserD... |
github | lcnbeapp/beapp-master | TellAfni.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/TellAfni.m | 5,472 | utf_8 | 77dce5f5339989af26f3e100da6bcfc3 | function [err] = TellAfni (cs, opt)
%
% [err] = TellAfni (cs, opt)
%
%Purpose:
% Drive AFNI
%
%
%Input Parameters:
% cs: An Nx1 vector of communication command structures
% It is obtained using NewCs structure
% opt: An optional options structure
% .QuitOnErr (0/[1]): Return from function if ... |
github | lcnbeapp/beapp-master | zinputdlg.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/zinputdlg.m | 16,591 | utf_8 | 63dc0806876466dc33fef8fbdfeb45c5 | function Answer=zinputdlg(Prompt, Title, NumLines, DefAns, Resize)
% A copy of inputdlg.m , modified to have better looking font settings
%ZINPUTDLG Input dialog box.
% ANSWER = ZINPUTDLG(PROMPT) creates a modal dialog box that returns user
% input for multiple prompts in the cell array ANSWER. PROMPT is a cell
% ar... |
github | lcnbeapp/beapp-master | afni_niml_read.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_niml_read.m | 2,791 | utf_8 | 3da5cff1cf07ffd470bd42539f8078b9 | function [p,s]=afni_niml_read(fn)
% simple function to read niml files
%
% P=AFNI_NIML_READ(FN) reads a file FN and returns a NIML structure P.
% [P,S]=AFNI_NIML_READ(FN) also returns the file contents S
%
% If FN refers to a file in another format than ASCII NIML, an attempt is
% made to convert the file to this forma... |
github | lcnbeapp/beapp-master | afni_nel_parse.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_nel_parse.m | 1,763 | utf_8 | 62fbd076a3c4430f06f6385abc18b2d8 | function [nel] = afni_nel_parse(nellcell)
%should really check that this is nel and not ngr ...
%assuming we have nel
%get the header part
cnel = char(nellcell); clear nellcell;
ncnel = length(cnel);
%break up into head and data
expr = '(?<head><(\w+).*?>)(?<data>.*)<';
%usi... |
github | lcnbeapp/beapp-master | afni_niml_print.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/afni_niml_print.m | 5,521 | utf_8 | 9dbc69da949e82e64071c668290ac2da | function s=afni_niml_print(p)
% takes a NIML data structure and converts it to string representation
%
% S=AFNI_NIML_PRINT(P) takes an NIML datastructure P and returns a string
% representation S.
%
% This function is more or less the inverse of AFNI_NIML_PARSE.
%
% The current implementation will take any struct that... |
github | lcnbeapp/beapp-master | CA_EZ_Prep.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/CA_EZ_Prep.m | 14,358 | utf_8 | af87e1ccd31dc096f0a411e877de8dd9 | function [MapMPM, MapML, aur] = CA_EZ_Prep()
% A function to process a new Eickhoff, Amunts and Zilles CA toolbox
% The function creates new versions of AFNI's source files
% thd_ttatlas_CA_EZ.c and thd_ttatlas_CA_EZ.h .
% The new files created are called thd_ttatlas_CA_EZ-auto.c and thd_ttatlas_CA_EZ-auto.h
% must be ... |
github | lcnbeapp/beapp-master | ROIcmap.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/afni/ROIcmap.m | 3,688 | utf_8 | 93376acea9697c3dce4c73aea3838d9b | function [M] = ROIcmap(nc,opt)
% [M] = ROIcmap([nc],[opt]);
% creates a colormap with
% no color too close to grayscale,
% no two consecutive colors too close
% no colors exeedingly close to another in the map
% no colors too close to a background color (optional)
% nc: number... |
github | lcnbeapp/beapp-master | bemcp_example.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/bemcp/bemcp_example.m | 21,663 | utf_8 | ee954ecd4779bb13a017d139b7a6acb1 |
function bemcp_example
% Simple function to test/demonstrate how the Boundary element functions are
% used in combination with Fildtrip/Forwinv routines.
%
% 1. A model is created as 3 concentric meshed spheres (using FT's
% icosahedron routines),
% 2. then random electrodes are placed on the upper part of the outer... |
github | lcnbeapp/beapp-master | hcluster.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/hcluster.m | 3,513 | utf_8 | 4f1454878c289ef16d6355f9b24353ce | function [P,Z,order]=hcluster(D,link)
%function [P,Z,order] = hcluster(D,link)
%
%PURPOSE
%
%To perform a hierarchical agglomerative clustering on a distance
%matrix. Returns partition vectors for each level of the clustering
%hierarchy and information for visualizing the clustering hierarchy
%as a dendrogram.
%
%INPU... |
github | lcnbeapp/beapp-master | cca.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/cca.m | 8,088 | utf_8 | b5659dc842e6c1fde35175caed2d8ea2 | function [P] = cca(D, P, epochs, Mdist, alpha0, lambda0)
%CCA Projects data vectors using Curvilinear Component Analysis.
%
% P = cca(D, P, epochs, [Dist], [alpha0], [lambda0])
%
% P = cca(D,2,10); % projects the given data to a plane
% P = cca(D,pcaproj(D,2),5); % same, but with PCA initialization
% P = ... |
github | lcnbeapp/beapp-master | icassoEst.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/icassoEst.m | 8,817 | utf_8 | adb9102f63b02f7a42b3da5bdcf803ae | function sR=icassoEst(mode,X,M,varargin)
%function sR=icassoEst(mode,X,M,['FastICAparamName1',value1,'FastICAparamName2',value2,...])
%
%PURPOSE
%
%To compute randomized ICA estimates M times from data X. Output of
%this function (sR) is called 'Icasso result structure' (see
%icassoStruct). sR keeps the on all the meth... |
github | lcnbeapp/beapp-master | icassoStruct.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/icassoStruct.m | 8,190 | utf_8 | d80e7670415d1867f114b16bebb620f6 | function sR=icassoStruct(X)
%function sR=icassoStruct([X])
%
%PURPOSE
%
%To initiate an Icasso result data structure which is meant for
%storing and keeping organized all data, parameters and results
%when performing the Icasso procedure.
%
%EXAMPLE OF BASIC USAGE
%
% S=icassoStruct(X);
%
%creates an Icasso result st... |
github | lcnbeapp/beapp-master | som_dendrogram.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/som_dendrogram.m | 9,039 | utf_8 | 43f32770e95d19d4a12855bd8bfb91f3 | function [h,Coord,Color,height] = som_dendrogram(Z,varargin)
%SOM_DENDROGRAM Visualize a dendrogram.
%
% [h,Coord,Color,height] = som_dendrogram(Z, [[argID,] value, ...])
%
% Z = som_linkage(sM);
% som_dendrogram(Z);
% som_dendrogram(Z,sM);
% som_dendrogram(Z,'coord',co);
%
% Input and output arguments ([]'s ... |
github | lcnbeapp/beapp-master | corrw.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/corrw.m | 1,654 | utf_8 | b24c05ddd84adfca75a0870878a9c0f7 | function R=corrw(W,D)
%function R=corrw(W,D)
%
%PURPOSE
%
%To compute mutual linear correlation coefficients between M
%independent component estimates using the demixing matrix W and
%the dewhitening matrix D of the original data.
%
% R=W*D*D'*W';
%
%INPUT
%
% W (field W in Icasso struct: demixing matrices)
% D (fi... |
github | lcnbeapp/beapp-master | reducesim.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/reducesim.m | 3,056 | utf_8 | d2d2a37c6d316586dbfc3da7760af840 | function S=reducesim(S,minLimit,partition,scatter,scatterLimit)
%function S=reducesim(S,minLimit)
% or
%function S=reducesim(S,minLimit,partition,scatter,scatterLimit)
%
%PURPOSE
%
%To reduce the number of lines that are drawn when the similarity
%matrix is visualized. That is, to set similarities below certain
%thres... |
github | lcnbeapp/beapp-master | clusterhull.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/clusterhull.m | 5,149 | utf_8 | 49c19208dafd1008be107e012aa6f36e | function [h_marker,txtcoord]=clusterhull(mode,coord,partition,color)
%function [h_marker,txtcoord]=clusterhull(mode,coord,partition,[color])
%
%PURPOSE
%
%To draw a cluster visualization where the objects (represented by
%points) belonging to the same cluster are presented by "cluster hulls",
%polygons where the edge o... |
github | lcnbeapp/beapp-master | vis_valuetype.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/vis_valuetype.m | 7,502 | utf_8 | cb7a373fcda9120d69231b2748371740 | function flag=vis_valuetype(value, valid, str);
% VIS_VALUETYPE Used for type checks in SOM Toolbox visualization routines
%
% flag = vis_valuetype(value, valid, str)
%
% Input and output arguments:
% value (varies) variable to be checked
% valid (cell array) size 1xN, cells are strings or vectors (see below)
... |
github | lcnbeapp/beapp-master | icassoGet.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/icasso/icassoGet.m | 5,635 | utf_8 | 9a56d24c879fa67d054651240e964543 | function out=icassoGet(sR,field,index)
%function out=icassoGet(sR,field,[index])
%
%PURPOSE
%
%Auxiliary function for obtaining various information from the
%Icasso result data structure. Using icassoGet, you can return
%information related to original data, e.g.: data matrix,
%(de)whitening matrix, total number of es... |
github | lcnbeapp/beapp-master | spm_input.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_input.m | 89,257 | utf_8 | 74a73562f0562998a037c0c5d7a512c7 | function varargout = spm_input(varargin)
% Comprehensive graphical and command line input function
% FORMATs (given in Programmers Help)
%_______________________________________________________________________
%
% spm_input handles most forms of interactive user input for SPM.
% (File selection is handled by spm_select... |
github | lcnbeapp/beapp-master | spm_write_sn.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_write_sn.m | 20,195 | utf_8 | 5bb2c4d938b07e035b1552465111fcf7 | function VO = spm_write_sn(V,prm,flags,extras)
% Write Out Warped Images.
% FORMAT VO = spm_write_sn(V,matname,flags,msk)
% V - Images to transform (filenames or volume structure).
% matname - Transformation information (filename or structure).
% flags - flags structure, with fields...
% interp ... |
github | lcnbeapp/beapp-master | spm_imatrix.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_imatrix.m | 1,499 | utf_8 | 295b97abf7200bfd1af63c3e32aae6fd | function P = spm_imatrix(M)
% returns the parameters for creating an affine transformation
% FORMAT P = spm_imatrix(M)
% M - Affine transformation matrix
% P - Parameters (see spm_matrix for definitions)
%___________________________________________________________________________
% Copyright (C) 2008 Wellcome... |
github | lcnbeapp/beapp-master | spm_affreg.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_affreg.m | 20,248 | utf_8 | 431e3807877742bdec89d07ce61e87f8 | function [M,scal] = spm_affreg(VG,VF,flags,M,scal)
% Affine registration using least squares.
% FORMAT [M,scal] = spm_affreg(VG,VF,flags,M0,scal0)
%
% VG - Vector of template volumes.
% VF - Source volume.
% flags - a structure containing various options. The fields are:
% WG - Weig... |
github | lcnbeapp/beapp-master | spm_vol.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_vol.m | 5,475 | utf_8 | 41a73601c2e44259fb8f1f4f3e870558 | function V = spm_vol(P)
% Get header information etc for images.
% FORMAT V = spm_vol(P)
% P - a matrix of filenames.
% V - a vector of structures containing image volume information.
% The elements of the structures are:
% V.fname - the filename of the image.
% V.dim - the x, y and z dimensions of the vo... |
github | lcnbeapp/beapp-master | spm_jobman.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_jobman.m | 21,324 | utf_8 | 970b3aa24a514dea929b79722697efdc | function varargout = spm_jobman(varargin)
% Main interface for SPM Batch System
% This function provides a compatibility layer between SPM and matlabbatch.
% It translates spm_jobman callbacks into matlabbatch callbacks and allows
% to edit and run SPM5 style batch jobs.
%
% FORMAT job_id = spm_jobman
% job_id =... |
github | lcnbeapp/beapp-master | spm_eeg_inv_vbecd_disp.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_eeg_inv_vbecd_disp.m | 22,913 | UNKNOWN | d298cddd05dcda0aab1c23b6a9f98906 | function spm_eeg_inv_vbecd_disp(action,varargin)
% Display the dipoles as obtained from VB-ECD
%
% FORMAT spm_eeg_inv_vbecd_disp('Init',D)
% Display the latest VB-ECD solution saved in the .inv{} field of the
% data structure D.
%
% FORMAT spm_eeg_inv_vbecd_disp('Init',D, ind)
% Display the ind^th .inv{} cell element, ... |
github | lcnbeapp/beapp-master | spm_figure.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_figure.m | 32,150 | utf_8 | 8f4bd924a038c03f7d509cc9e37b8395 | function varargout=spm_figure(varargin)
% Setup and callback functions for Graphics window
% FORMAT varargout=spm_figure(varargin)
% - An embedded callback, multi-function function
% - For detailed programmers comments, see format specifications
% in main body of code
%______________________________... |
github | lcnbeapp/beapp-master | spm_smooth.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_smooth.m | 3,654 | utf_8 | 0f00684dc1b7cb99c88cd50e6a64a20a | function spm_smooth(P,Q,s,dtype)
% 3 dimensional convolution of an image
% FORMAT spm_smooth(P,Q,S,dtype)
% P - image to be smoothed
% Q - filename for smoothed image
% S - [sx sy sz] Gaussian filter width {FWHM} in mm
% dtype - datatype [default: 0 == same datatype as P]
%__________________________________... |
github | lcnbeapp/beapp-master | spm_smoothto8bit.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_smoothto8bit.m | 2,377 | utf_8 | 89653bff7e0591df6fa676885a830a16 | function VO = spm_smoothto8bit(V,fwhm)
% 3 dimensional convolution of an image to 8bit data in memory
% FORMAT VO = spm_smoothto8bit(V,fwhm)
% V - mapped image to be smoothed
% fwhm - FWHM of Guassian filter width in mm
% VO - smoothed volume in a form that can be used by the
% spm_*_vol.mex* functions.... |
github | lcnbeapp/beapp-master | spm_platform.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_platform.m | 8,498 | utf_8 | 9af699511e4e0bff6555d7a1e3fe0a23 | function varargout=spm_platform(varargin)
% Platform specific configuration parameters for SPM
%
% FORMAT ans = spm_platform(arg)
% arg - optional string argument, can be
% - 'bigend' - return whether this architecture is bigendian
% - 0 - is little endian
% - 1 - ... |
github | lcnbeapp/beapp-master | spm_preproc.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_preproc.m | 20,519 | utf_8 | c08f55c5a2eaeb3e30508750d366f52f | function results = spm_preproc(varargin)
% Combined Segmentation and Spatial Normalisation
%
% FORMAT results = spm_preproc(V,opts)
% V - image to work with
% opts - options
% opts.tpm - n tissue probability images for each class
% opts.ngaus - number of Gaussians per class (n+1 classes)
% opts.warpreg ... |
github | lcnbeapp/beapp-master | spm_preproc_write.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_preproc_write.m | 8,906 | utf_8 | 9312486f72c3a8971ab0c9e847c3a465 | function spm_preproc_write(p,opts)
% Write out VBM preprocessed data
% FORMAT spm_preproc_write(p,opts)
% p - results from spm_prep2sn
% opts - writing options. A struct containing these fields:
% biascor - write bias corrected image
% GM - flags for which images should be written
% WM ... |
github | lcnbeapp/beapp-master | spm.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm.m | 44,832 | utf_8 | d2d75e50e191a0c29cf483d58a754d7f | function varargout=spm(varargin)
% SPM: Statistical Parametric Mapping (startup function)
%_______________________________________________________________________
% ___ ____ __ __
% / __)( _ \( \/ )
% \__ \ )___/ ) ( Statistical Parametric Mapping
% (___/(__) (_/\/\_) SPM - http://www.fil.ion.ucl.ac.uk/... |
github | lcnbeapp/beapp-master | spm_orthviews.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_orthviews.m | 77,288 | utf_8 | 8878b323c3d77a20da9a6c983c6cb96a | function varargout = spm_orthviews(action,varargin)
% Display Orthogonal Views of a Normalized Image
% FORMAT H = spm_orthviews('Image',filename[,position])
% filename - name of image to display
% area - position of image
% - area(1) - position x
% - area(2) - position y
% - area... |
github | lcnbeapp/beapp-master | spm_maff.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_maff.m | 11,287 | utf_8 | 67d7a7a2de40e5f6a1c0c0e5e9f630f3 | function [M,h] = spm_maff(varargin)
% Affine registration to MNI space using mutual information
% FORMAT M = spm_maff(P,samp,x,b0,MF,M,regtyp,ff)
% P - filename or structure handle of image
% x - cell array of {x1,x2,x3}, where x1 and x2 are
% co-ordinates (from ndgrid), and x3 is a list of
% ... |
github | lcnbeapp/beapp-master | spm_normalise.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_normalise.m | 13,235 | utf_8 | 5dfafbc96b6282a48b19ee3433a77167 | function params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% Spatial (stereotactic) normalization
%
% FORMAT params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% VG - template handle(s)
% VF - handle of image to estimate params from
% matname - name of file to store deformation definitions
% VWG ... |
github | lcnbeapp/beapp-master | spm_minmax.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_minmax.m | 3,705 | utf_8 | 58192721e506d5814be863bb8a7e2acf | function [mnv,mxv] = spm_minmax(g)
% Compute a suitable range of intensities for VBM preprocessing stuff
% FORMAT [mnv,mxv] = spm_minmax(g)
% g - array of data
% mnv - minimum value
% mxv - maximum value
%
% A MOG with two Gaussians is fitted to the intensities. The lower
% Gaussian is assumed to represent backgr... |
github | lcnbeapp/beapp-master | spm_create_vol.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_create_vol.m | 4,914 | utf_8 | 3d1ffa54c52618a0923d6642b8f5e471 | function V = spm_create_vol(V,varargin)
% Create a volume
% FORMAT V = spm_create_vol(V)
% V - image volume information (see spm_vol.m)
%____________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id$
for i=1:numel(V),
... |
github | lcnbeapp/beapp-master | spm_check_installation.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_check_installation.m | 19,147 | utf_8 | 5500b12cea8521a513b4ff3226dc8f4d | function spm_check_installation(action)
% Check SPM installation
% FORMAT spm_check_installation('basic')
% Perform a superficial check of SPM installation [default].
%
% FORMAT spm_check_installation('full')
% Perform an in-depth diagnostic of SPM installation.
%
% FORMAT spm_check_installation('build')
% Build signat... |
github | lcnbeapp/beapp-master | spm_prep2sn.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/spm_prep2sn.m | 7,345 | utf_8 | 41b5744c0289cc48a8070de4648e82da | function [po,pin] = spm_prep2sn(p)
% Convert the output from spm_preproc into an sn.mat
% FORMAT [po,pin] = spm_prep2sn(p)
% p - the results of spm_preproc
% po - the output in a form that can be used by
% spm_write_sn.
% pin - the inverse transform in a form that can be
% used by spm_write_sn.
%________... |
github | lcnbeapp/beapp-master | cfg_getfile.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/matlabbatch/cfg_getfile.m | 46,070 | utf_8 | 3e6a6877315f1b08af13c88de5044295 | function [t,sts] = cfg_getfile(varargin)
% File selector
% FORMAT [t,sts] = cfg_getfile(n,typ,mesg,sel,wd,filt,frames)
% n - Number of files
% A single value or a range. e.g.
% 1 - Select one file
% Inf - Select any number of files
% [1 Inf] - Select 1 to In... |
github | lcnbeapp/beapp-master | coor2D.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@meeg/coor2D.m | 4,007 | utf_8 | f94070275bb14e35788e110abf929115 | function [res, plotind] = coor2D(this, ind, val, mindist)
% returns x and y coordinates of channels in 2D plane
% FORMAT coor2D(this)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak, Laurence Hunt
% $Id: coor2D.m 43... |
github | lcnbeapp/beapp-master | cache.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@meeg/cache.m | 754 | utf_8 | 327310c88f9e84a225af302977c46fe6 | function res = cache(this, stuff)
% Method for retrieving/putting stuff from/into the temporary cache
% FORMAT res = cache(obj, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: cache.m 1373 2008-04-11 14:2... |
github | lcnbeapp/beapp-master | path.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@meeg/path.m | 558 | utf_8 | 7149045fd0a2ac178f0e2dcaf166b5e0 | function res = path(this, name)
% Method for getting/setting path
% FORMAT res = path(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: path.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
case 1... |
github | lcnbeapp/beapp-master | fname.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@meeg/fname.m | 538 | utf_8 | 00404808a43026efada0ed0cb853d259 | function res = fname(this, name)
% Method for getting/setting file name
% FORMAT res = fname(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fname.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
... |
github | lcnbeapp/beapp-master | fnamedat.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@meeg/fnamedat.m | 589 | utf_8 | 39857f5d9ecf819f3bc1581bde7009cf | function res = fnamedat(this, name)
% Method for getting/setting file name of data file
% FORMAT res = fnamedat(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fnamedat.m 1373 2008-04-11 14:24:03Z s... |
github | lcnbeapp/beapp-master | privatepermission.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatepermission.m | 827 | utf_8 | be8d85c3b8ab99ec9cf086139103335f | function varargout = permission(varargin)
% Format
% For getting the value
% dat = permission(obj)
%
% For setting the value
% obj = permission(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
va... |
github | lcnbeapp/beapp-master | privatescl_slope.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatescl_slope.m | 680 | utf_8 | 4f91ac10412885a1654d520cdaf4c008 | function varargout = scl_slope(varargin)
% Format
% For getting the value
% dat = scl_slope(obj)
%
% For setting the value
% obj = scl_slope(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnbeapp/beapp-master | subsasgn.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/subsasgn.m | 4,553 | utf_8 | 8649bb5b2b003aef0a04f01504128d47 | function obj = subsasgn(obj,subs,dat)
% Overloaded subsasgn function for file_array objects.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if isempty(subs)
return;
end;
if ~strcmp(subs(1).type,'()'),
if strcmp(su... |
github | lcnbeapp/beapp-master | privatedim.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatedim.m | 762 | utf_8 | 0ad58f05456fccb279755b25289027c4 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = asgn(vara... |
github | lcnbeapp/beapp-master | privatescl_inter.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatescl_inter.m | 681 | utf_8 | 341f747372c0465de4be134d3595e133 | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnbeapp/beapp-master | privatefname.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatefname.m | 648 | utf_8 | 87ba48423085238dda8deb873c3a5a24 | function varargout = fname(varargin)
% Format
% For getting the value
% dat = fname(obj)
%
% For setting the value
% obj = fname(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnbeapp/beapp-master | privateoffset.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privateoffset.m | 697 | utf_8 | 5b5493cb277651ae207a6e094e50f16f | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} =... |
github | lcnbeapp/beapp-master | privatedtype.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatedtype.m | 2,225 | utf_8 | 4e4a2cfe6a4a9d295f1b9f3eb3fd3eb1 | function varargout = dtype(varargin)
% Format
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnbeapp/beapp-master | subsref.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/subsref.m | 5,222 | utf_8 | 80f9298dd645012f0fe42fcb32d6beef | function varargout=subsref(obj,subs)
% SUBSREF Subscripted reference
% An overloaded function...
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if isempty(subs), return; end
switch subs(1).type
case '{}'
er... |
github | lcnbeapp/beapp-master | disp.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/disp.m | 887 | utf_8 | 64720ef6ff6e10ebb67d01f5d3a04f7f | function disp(obj)
% Display a file_array object
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if numel(struct(obj))>1,
fprintf(' %s object: ', class(obj));
sz = size(obj);
if length(sz)>4,
fpri... |
github | lcnbeapp/beapp-master | offset.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/offset.m | 697 | utf_8 | 5b5493cb277651ae207a6e094e50f16f | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} =... |
github | lcnbeapp/beapp-master | scl_slope.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/scl_slope.m | 680 | utf_8 | 4f91ac10412885a1654d520cdaf4c008 | function varargout = scl_slope(varargin)
% Format
% For getting the value
% dat = scl_slope(obj)
%
% For setting the value
% obj = scl_slope(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnbeapp/beapp-master | scl_inter.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/scl_inter.m | 681 | utf_8 | 341f747372c0465de4be134d3595e133 | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnbeapp/beapp-master | fname.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/fname.m | 648 | utf_8 | 87ba48423085238dda8deb873c3a5a24 | function varargout = fname(varargin)
% Format
% For getting the value
% dat = fname(obj)
%
% For setting the value
% obj = fname(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnbeapp/beapp-master | dim.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/dim.m | 762 | utf_8 | 0ad58f05456fccb279755b25289027c4 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = asgn(vara... |
github | lcnbeapp/beapp-master | permission.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/permission.m | 827 | utf_8 | be8d85c3b8ab99ec9cf086139103335f | function varargout = permission(varargin)
% Format
% For getting the value
% dat = permission(obj)
%
% For setting the value
% obj = permission(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
va... |
github | lcnbeapp/beapp-master | dtype.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/dtype.m | 2,225 | utf_8 | 4e4a2cfe6a4a9d295f1b9f3eb3fd3eb1 | function varargout = dtype(varargin)
% Format
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnbeapp/beapp-master | subsasgn.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@nifti/subsasgn.m | 14,522 | utf_8 | 86db451a023fd9a4a9252278adcab3ab | function obj = subsasgn(obj,subs,varargin)
% Subscript assignment
% See subsref for meaning of fields.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
switch subs(1).type,
case {'.'},
if numel(obj)~=nargin-2,
e... |
github | lcnbeapp/beapp-master | subsref.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@nifti/subsref.m | 8,717 | utf_8 | 3e5580b77072a8d2a98deb98231f6bab | function varargout = subsref(opt,subs)
% Subscript referencing
%
% Fields are:
% dat - a file-array representing the image data
% mat0 - a 9-parameter affine transform (from qform0)
% Note that the mapping is from voxels (where the first
% is considered to be at [1,1,1], to m... |
github | lcnbeapp/beapp-master | create.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@nifti/create.m | 1,922 | utf_8 | 3d0a267602ecbe433be656c175acb2a2 | function create(obj,wrt)
% Create a NIFTI-1 file
% FORMAT create(obj)
% This writes out the header information for the nifti object
%
% create(obj,wrt)
% This also writes out an empty image volume if wrt==1
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Cen... |
github | lcnbeapp/beapp-master | getdict.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@nifti/private/getdict.m | 5,184 | utf_8 | eebe7d552eb3613897e82d860005c90e | function d = getdict
% Dictionary of NIFTI stuff
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
persistent dict;
if ~isempty(dict),
d = dict;
return;
end;
% Datatype
t = true;
f = false;
table = {...
0 ,'UN... |
github | lcnbeapp/beapp-master | write_extras.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/spm8/@nifti/private/write_extras.m | 829 | utf_8 | 598b84950ce613b42919ce1f50a59132 | function extras = write_extras(fname,extras)
% Write extra bits of information
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
[pth,nam,ext] = fileparts(fname);
switch ext
case {'.hdr','.img','.nii'}
mname = fullfile(pt... |
github | lcnbeapp/beapp-master | delete.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/delete.m | 1,189 | utf_8 | 9ca7b2db1b9fc84848585e118ac9d026 | function tree = delete(tree,uid)
% XMLTREE/DELETE Delete (delete a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be deleted
%__________________________________________________________________________
%
% Delete a subtree given its UID
% The tree parameter must be in ... |
github | lcnbeapp/beapp-master | save.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/save.m | 5,114 | utf_8 | 1c7adbb3f79946f51f25d9031fcb515c | function varargout = save(tree, filename)
% XMLTREE/SAVE Save an XML tree in an XML file
% FORMAT varargout = save(tree,filename)
%
% tree - XMLTree
% filename - XML output filename
% varargout - XML string
%__________________________________________________________________________
%
% Convert an XML tree into a ... |
github | lcnbeapp/beapp-master | branch.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/branch.m | 1,750 | utf_8 | 407ff520e9de6dc9150a5b4f44d75c90 | function subtree = branch(tree,uid)
% XMLTREE/BRANCH Branch Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the root element of the subtree
% subtree - XMLTree object (a subtree from tree)
%__________________________________________________________________________
%
% Return a su... |
github | lcnbeapp/beapp-master | flush.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/flush.m | 1,413 | utf_8 | 64502185e2efb9de8f36e36751a39517 | function tree = flush(tree,uid)
% XMLTREE/FLUSH Flush (Clear a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be cleared
% Default is root
%__________________________________________________________________________
%
% Clear a subtree given its UID (remove... |
github | lcnbeapp/beapp-master | copy.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/copy.m | 1,634 | utf_8 | e6df62a4f41243b78ed8c517b15e493b | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
github | lcnbeapp/beapp-master | convert.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/convert.m | 5,573 | utf_8 | 05b85174fb85e5d62de81654b76ef7ab | function s = convert(tree,uid)
% XMLTREE/CONVERT Converter an XML tree in a structure
%
% tree - XMLTree object
% uid - uid of the root of the subtree, if provided.
% Default is root
% s - converted structure
%__________________________________________________________________________
%
%... |
github | lcnbeapp/beapp-master | editor.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/editor.m | 12,418 | utf_8 | 80850644600bde45b47898d068ef0978 | function editor(tree)
%XMLTREE/EDITOR A Graphical User Interface for an XML tree
% EDITOR(TREE) opens a new figure displaying the xmltree object TREE.
% H = EDITOR(TREE) also returns the figure handle H.
%
% This is a beta version of <xmltree/view> successor
%
% See also XMLTREE
%___________________________________... |
github | lcnbeapp/beapp-master | find.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/find.m | 5,901 | utf_8 | b241bfaac569f137b8b809b7b66765f3 | function list = find(varargin)
% XMLTREE/FIND Find elements in a tree with specified characteristics
% FORMAT list = find(varargin)
%
% tree - XMLTree object
% xpath - string path with specific grammar (XPath)
% uid - lists of root uid's
% parameter/value - pair of pattern
% list - list of uid's of matched elements... |
github | lcnbeapp/beapp-master | xml_parser.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@xmltree/private/xml_parser.m | 16,192 | utf_8 | 7e44abd21a10863623b455d03e0651bb | function tree = xml_parser(xmlstr)
% XML (eXtensible Markup Language) Processor
% FORMAT tree = xml_parser(xmlstr)
%
% xmlstr - XML string to parse
% tree - tree structure corresponding to the XML file
%__________________________________________________________________________
%
% xml_parser.m is an XML 1.0 (http:/... |
github | lcnbeapp/beapp-master | save.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@gifti/save.m | 21,043 | utf_8 | 747d3d8c45fa4a27160c0c333450a4dc | function save(this,filename,encoding)
% Save GIfTI object in a GIfTI format file
% FORMAT save(this,filename)
% this - GIfTI object
% filename - name of GIfTI file to be created [Default: 'untitled.gii']
% encoding - optional argument to specify encoding format, among
% ASCII, Base64Binary, GZipBase6... |
github | lcnbeapp/beapp-master | gifti.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@gifti/gifti.m | 3,728 | utf_8 | 37f5d9e67cb8f5e79f2ac46e1486ffd0 | function this = gifti(varargin)
% GIfTI Geometry file format class
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%_____________________________________________________________... |
github | lcnbeapp/beapp-master | read_gifti_file.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@gifti/private/read_gifti_file.m | 6,604 | utf_8 | 3e691fdd0839d8cfad3929e4e181a5c1 | function this = read_gifti_file(filename, this)
% Low level reader of GIfTI 1.0 files
% FORMAT this = read_gifti_file(filename, this)
% filename - XML GIfTI filename
% this - structure with fields 'metaData', 'label' and 'data'.
%__________________________________________________________________________
% Cop... |
github | lcnbeapp/beapp-master | isintent.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/gifti/@gifti/private/isintent.m | 2,477 | utf_8 | 611bd4b3bf09d89f88da3652cc8e6320 | function [a, b] = isintent(this,intent)
% Correspondance between fieldnames and NIfTI intent codes
% FORMAT ind = isintent(this,intent)
% this - GIfTI object
% intent - fieldnames
% a - indices of found intent(s)
% b - indices of dataarrays of found intent(s)
%_______________________________________... |
github | lcnbeapp/beapp-master | sb_rhs_venant.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/simbio/sb_rhs_venant.m | 1,317 | utf_8 | 2a6743d0e11f6cd5ca8bc3f2a5bab884 | function rhs = sb_rhs_venant(pos,dir,vol);
% SB_RHS_VENANT
%
% $Id$
%find node closest to source position
next_nd = sb_get_next_nd(pos,vol.pos);
%find nodes neighbouring closest node
if isfield(vol,'tet')
ven_nd = sb_get_ven_nd(next_nd,vol.tet);
elseif isfield(vol,'hex')
ven_nd = sb_get_ven_nd(next_nd,vol.hex... |
github | lcnbeapp/beapp-master | netcdf.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/netcdf/netcdf.m | 5,097 | utf_8 | 3cc73e65d1ed73e0a6836af118228033 | function S = netcdf(File,varargin)
% Function to read NetCDF files
% S = netcdf(File)
% Input Arguments
% File = NetCDF file to read
% Optional Input Arguments:
% 'Var',Var - Read data for VarArray(Var), default [1:length(S.VarArray)]
% 'Rec',Rec - Read data for Record(Rec), default [1:S.NumRecs]
% Output Argum... |
github | lcnbeapp/beapp-master | writeCPersist.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/writeCPersist.m | 5,086 | utf_8 | 0c56dc571aa56100f050678e5fe815ff | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%% Function writeCPersist %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function writeCPersist(filename,Tag)
% Version 1.2 24 April 2007. Removed terminating null characters from charatcer strings
% ... |
github | lcnbeapp/beapp-master | getCTFBalanceCoefs.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/getCTFBalanceCoefs.m | 20,490 | utf_8 | 2c434fcbdb53fbc50ee3fbda72e98883 | function [alphaMEG,MEGindex,MEGbalanceindex,alphaGref,Grefindex,Gbalanceindex]=...
getCTFBalanceCoefs(ds,balanceType,unit);
% Reads balance coefficients for SQUID data in phi0's, and converts to coefficients
% for data in physical units.
% Input : ds : (1) ds structure from readCTFds
% balanceType : 'N... |
github | lcnbeapp/beapp-master | writeCTFds.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/writeCTFds.m | 68,946 | utf_8 | 96615f4833d69490d5b3e47f6f86c538 | function ds=writeCTFds(datasetname,ds,data,unit);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %
% ... |
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