plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | lcnbeapp/beapp-master | writeRes4.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/writeRes4.m | 8,560 | utf_8 | 416bc2b62624835c63140e54415d2f49 | function res4=writeRes4(res4File,res4,MAX_COILS);
% Write the new .res4 file. Use ieee-be (big endian) format
% Character-string output is done using function writeCTFstring which
% checks that strings are the correct length for the .res4 file format.
% Function calls: - writeCTFstring (included in this listing).... |
github | lcnbeapp/beapp-master | addCTFtrial.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/addCTFtrial.m | 51,483 | utf_8 | b59730fdb231f07741e7e87dea9e6c1c | function cntrl=addCTFtrial(datasetname,data,unit,mrk,cls,badSegments);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %... |
github | lcnbeapp/beapp-master | setCTFDataBalance.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/setCTFDataBalance.m | 32,056 | utf_8 | 894c3744554abe635876ce6944dca0cd | function [data,ds]=setCTFDataBalance(data,ds,balance1,unit,chanList,messages);
% Version 1.1 13 April 2007 Mod to chanList: If chanList is omitted and
% size(data,2)<ds.res4.no_channels, then setCTFDataBalance
% sets chanList=1:size(data,2) and prints a war... |
github | lcnbeapp/beapp-master | writeCTFMRI.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/writeCTFMRI.m | 8,517 | utf_8 | c6bdbc15d67e3621b8109f6b399f5eae | function writeCTFMRI(fileName,MRItags,MRIdata);
% Version 1.2 25 April 2007 Module writeCPersist changed, and removed from this text
% file.
% Version 1.1 19 April 2007 : No changes from v1.0
% Version 1.0 27 Oct. 2006
% Write a CTF MRI in v4 format.
% For file format and a def... |
github | lcnbeapp/beapp-master | readCTFds.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/ctf/readCTFds.m | 36,570 | utf_8 | e228d972ce0710af61be4d1d0c89f3fe | function ds=readCTFds(datasetname)
% ************************************************************************
%
% This program is provided to users of CTF MEG systems as a courtesy only.
% It's operation has not been verified for clinical use.
% Please do not redistribute it without permission from CTF Systems I... |
github | lcnbeapp/beapp-master | sqddemo.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/sqddemo.m | 13,633 | utf_8 | 3e91690d3d302c08b018202387b55f3c | function sqddemo(action)
% SQDDEMO; Provides a interactive demo explaining the use of sqdread and
% sqdwrite functions
persistent Newline;
persistent Running;
persistent Decoration;
if ~nargin
action = 'start';
end;
switch lower(action)
case 'init'
Newline = sprintf('\n');
Running = uicontinue(... |
github | lcnbeapp/beapp-master | get.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/@chanhandle/get.m | 6,405 | utf_8 | 72519eea5ca24f660f7729d2725a9efb | function out = get(t,varargin)
% GET Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-N or... |
github | lcnbeapp/beapp-master | chanhandle.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/@chanhandle/chanhandle.m | 3,739 | utf_8 | d43b79acd008d1094f4aabd77746e71b | function t = chanhandle(varargin)
% T = CHANHANDLE; Constructor for class CHANHANDLE
% Chanhandle class contains channel-specific information only.
% An object belonging to chanhandle has the following properties:
% ChannelNumber
% Sensitivity
% SensorInfo
% Usage:
% t = chanhandle; Default values
% t = chanhan... |
github | lcnbeapp/beapp-master | get.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/@sqdhandle/get.m | 3,777 | utf_8 | ee256890517a8c295444d2cc58ed54cd | function out = get(t,prop)
% GET Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-N or N-b... |
github | lcnbeapp/beapp-master | putdata.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/@sqdhandle/putdata.m | 10,726 | utf_8 | 59ea137b693298211a264bf05305767f | function err = putdata(t,filename,varargin)
% ERR = PUTDATA(SQDHANDLE,FILENAME,'DATA',channeldata);
% Writes new Channel Data to .sqd file given by 'filename'. The template
% (Acquisition and Setup Information) is chosen from SQDHANDLE. It assumes
% that the channeldata is in a format (shown below) and appropriately ... |
github | lcnbeapp/beapp-master | get.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/external/sqdproject/@acqparam/get.m | 3,525 | utf_8 | c36be430c00919d46ee5184a3794613e | function out = get(t,prop)
% GET(T,PROP) Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-... |
github | lcnbeapp/beapp-master | nansum.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/src/nansum.m | 194 | utf_8 | d26aaa8d5695a2cd15c51e72c3d4a186 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
x(isnan(x)) = 0;
if nargin==1
y = sum(x);
else
y = sum(x,dim);
end
end % function
|
github | lcnbeapp/beapp-master | nanstd.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/src/nanstd.m | 248 | utf_8 | fa0dc38960ab4c502a685ee11ebb3328 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
end % function
|
github | lcnbeapp/beapp-master | nanmean.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/src/nanmean.m | 245 | utf_8 | 8ab56ab826c1e69fd89a8937baae4bf0 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
if nargin<2
N = sum(~isnan(x));
y = nansum(x) ./ N;
else
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
end % function
|
github | lcnbeapp/beapp-master | ft_connectivity_corr.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/connectivity/ft_connectivity_corr.m | 8,589 | utf_8 | 65aed98bf500c7a9cfb427092834352e | function [c, v, outcnt] = ft_connectivity_corr(input, varargin)
% FT_CONNECTIVITY_CORR computes correlation, coherence or a related
% quantity from a data-matrix containing a covariance or cross-spectral
% density.
%
% Use as
% [c, v, n] = ft_connectivity_corr(input, varargin)
%
% The input data input should be an a... |
github | lcnbeapp/beapp-master | ft_connectivity_psi.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/connectivity/ft_connectivity_psi.m | 5,649 | utf_8 | db9ca445aeb3e9dc93fc82e65fdc4335 | function [c, v, n] = ft_connectivity_psi(input, varargin)
% FT_CONNECTIVITY_PSI computes the phase slope index from a data-matrix
% containing the cross-spectral density. It implements the method described
% in: Nolte et al., Robustly estimating the flow direction of information
% in complex physical systems. Physical... |
github | lcnbeapp/beapp-master | sfactorization_wilson2x2.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/connectivity/private/sfactorization_wilson2x2.m | 8,406 | utf_8 | 73bfa40093aff0fb82e9ca232813340b | function [H, Z, S, psi] = sfactorization_wilson2x2(S,freq,Niterations,tol,cmbindx,fb,init,checkflag)
% SFACTORIZATION_WILSON2X2 performs pairwise non-parametric spectral factorization on
% cross-spectra, based on Wilson's algorithm.
%
% Usage : [H, Z, psi] = sfactorization_wilson(S,freq);
%
% Inputs : S (1-sided, 3D-... |
github | lcnbeapp/beapp-master | ft_warning.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/connectivity/private/ft_warning.m | 7,789 | utf_8 | d832a7ad5e2f9bb42995e6e5d4caa198 | function [ws, warned] = ft_warning(varargin)
% FT_WARNING will throw a warning for every unique point in the
% stacktrace only, e.g. in a for-loop a warning is thrown only once.
%
% Use as one of the following
% ft_warning(string)
% ft_warning(id, string)
% Alternatively, you can use ft_warning using a timeout
% ... |
github | lcnbeapp/beapp-master | sfactorization_wilson.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/connectivity/private/sfactorization_wilson.m | 7,826 | utf_8 | 42fad4dc181f918d0eae9b4b4158dec0 | function [H, Z, S, psi] = sfactorization_wilson(S,freq,Niterations,tol,fb,init,checkflag)
% SFACTORIZATION_WILSON performs multivariate non-parametric spectral factorization on
% cross-spectra, based on Wilson's algorithm.
%
% Usage : [H, Z, S, psi] = sfactorization_wilson(S,freq);
%
% Inputs : S (1-sided, 3D-spectra... |
github | lcnbeapp/beapp-master | test_corrupt_matfiles.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_corrupt_matfiles.m | 977 | utf_8 | 5ab1651a584ef5f3c5112d046bde5d58 | function test_corrupt_matfiles
% MEM 8gb
% WALLTIME 10:00:00
files = findfiles('/home/common/matlab/fieldtrip/data/test');
status = true(size(files));
for i=1:length(files)
try
tmp = load(files{i});
clear tmp
fprintf('passed reading %s\n', files{i});
catch
status(i) = false;
warning('failed r... |
github | lcnbeapp/beapp-master | test_tutorial_eventrelatedstatistics.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_tutorial_eventrelatedstatistics.m | 9,523 | utf_8 | 2cf8fa1f8ee413ae513bff8697d5f5e7 | function test_tutorial_eventrelatedstatistics(datadir)
% MEM 2500mb
% WALLTIME 00:20:00
% TEST test_tutorial_eventrelatedstatistics
% TEST ft_timelockanalysis ft_multiplotER ft_singleplotER ft_timelockstatistics
% TEST ft_topoplotER ft_clusterplot
global ft_default;
ft_default.feedback = 'no';
if nargin==0
if isp... |
github | lcnbeapp/beapp-master | test_old_ft_freqanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_old_ft_freqanalysis.m | 4,746 | utf_8 | 6af1e431442a1ca536fdb9f401782c5c | function test_old_ft_freqanalysis
% MEM 1gb
% WALLTIME 00:10:00
% TEST test_old_ft_freqanalysis
function test_ft_freqanalysis
% TEST_FT_FREQANALYSIS
% This script tests the ft_freqanalysis functions using simulated data
% A. Stolk and J.M. Schoffelen
% simulate one second of data, samplefreq = 1200 hz
t = (1:1200)/... |
github | lcnbeapp/beapp-master | test_bug1306.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1306.m | 3,242 | utf_8 | 6eafe5e96456aef8810d60524f895038 | function test_bug1306b
% MEM 1500mb
% WALLTIME 00:10:00
% Use function signature below for testing --- note that xUnit does not seem to support it.
%function datanew = test_ft_preprocessing(datainfo, writeflag, version)
% TEST test_ft_preprocessing
% TEST ft_preprocessing ref_datasets
% writeflag determines whether... |
github | lcnbeapp/beapp-master | test_bug1988.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1988.m | 3,484 | utf_8 | 843427441883f86575969f343d6b7737 | function test_bug1988
% MEM 3gb
% WALLTIME 00:45:00
% TEST test_bug1988 ft_volumesegment ft_prepare_headmodel
%% segmentedmri.mat
% from current version may not match what is on the ftp for tutorials
% as it's called in the BF tutorial
mri = ft_read_mri('/home/common/matlab/fieldtrip/data/ftp/tutorial/beamformer/Su... |
github | lcnbeapp/beapp-master | test_ft_sourceanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_sourceanalysis.m | 84,994 | utf_8 | 8dd6e4bc89de5f6d19e62984a36b9342 | function [varargout] = test_ft_sourceanalysis(datainfo, writeflag, version, diagnosticsflag)
% MEM 4gb
% WALLTIME 04:30:00
% TEST test_ft_sourceanalysis
% TEST ft_sourceanalysis ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
% diagnosticsflag... |
github | lcnbeapp/beapp-master | test_ft_preprocessing.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_preprocessing.m | 2,987 | utf_8 | b83998ddf8d5db1bb3dbea7d4905cd8f | function test_ft_preprocessing(datainfo, writeflag, version)
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_ft_preprocessing
% TEST ft_preprocessing ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
if nargin<1
datainfo = ref_datasets;
end
if na... |
github | lcnbeapp/beapp-master | test_bug2377b.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug2377b.m | 3,684 | utf_8 | 6609cf02d809a7ed643457946040bee9 | function test_bug2377b
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_bug2377b
% TEST ft_senslabel ft_senstype ft_chantype ft_chanunit ft_datatype_sens
[pnt, tri] = icosahedron162;
pnt = pnt .* 10; % convert to cm
sel = find(pnt(:,3)>0); % take the upper hemisphere
nchan = length(sel); ... |
github | lcnbeapp/beapp-master | test_bug1786.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1786.m | 28,790 | utf_8 | 888eea2bc9b55eb9bbd83a5d3f474e8d | function test_bug1786
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_bug1786
% TEST ft_channelrepair ft_prepare_neighbours
% Original report:
% Hello,
%
% When I run sphericalSplineInterpolate.m on my data it gets stuck on line 55 at:
% "iC = pinv(C);".
%
% Thanks
% Yoel
%
% http://bugzilla.fcdonders.nl/show_bug.cgi... |
github | lcnbeapp/beapp-master | test_bug2761.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug2761.m | 516 | utf_8 | 40e8c6fcd9af682c490acf41bf40d317 |
function test_bug2761
% WALLTIME 00:10:00
% MEM 1GB
% TEST test_bug2761
% TEST ft_connectivityanalysis ft_connectivity_corr
data = [];
for i=1:5
data.label{i} = num2str(i);
end
for i=1:13
data.trial{i} = randn(5,300);
data.time{i} = (1:300)/300;
end
cfg = [];
cfg.covariance = 'yes';
timelock = ft_timelocka... |
github | lcnbeapp/beapp-master | test_csp.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_csp.m | 2,280 | utf_8 | 6749925fb2418cf2a37607668d16c4c7 | function test_suite = test_csp
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_csp
% TEST ft_component_analysis
% Please beware of notations mistakes in [1]. For example equation (1) does not
% compute the t by t channel covariance, but an n by n time covariance matrix.
%
% [1] Zoltan J. Koles. The quantitative extract... |
github | lcnbeapp/beapp-master | test_bug1925.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1925.m | 1,259 | utf_8 | 3822edac5639686e3eb5ab751e54276d | function test_bug1925
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_bug1925
% TEST surface_nesting ft_headmodel_bemcp
[ftver, ftpath] = ft_version;
cd(fullfile(ftpath, 'forward/private')); % this is where the surface_nesting function is located
[pos, tri] = icosahedron162;
bnd10.id = 10;
bnd10.pos = pos*10;
bnd10.... |
github | lcnbeapp/beapp-master | test_ft_timelockanalysis_new.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_timelockanalysis_new.m | 15,554 | utf_8 | 25776f063c3317b6ed7bb48c417064d8 | function test_ft_timelockanalysis_new(datainfo,writeflag)
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_ft_timelockanalysis_new
% ft_timelockanalysis_new ft_timelockanalysis ref_datasets
% this is a function for testing ft_timelockanalysis_new, which is not official yet
% the optional writeflag determines whether th... |
github | lcnbeapp/beapp-master | test_bug2225.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug2225.m | 219 | utf_8 | cd5a86e01c4737d10a1bf2c4f91cde09 | function test_bug2225
% WALLTIME 00:10:00
% MEM 1gb
tic
for i=1:10000
issue_warning
end % for
toc
end % main function
function issue_warning
ft_warning('this warning should not show too often');
end % subfunction
|
github | lcnbeapp/beapp-master | test_tutorial_coherence.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_tutorial_coherence.m | 7,081 | utf_8 | a00ebdbf1a5ecf3f6ec67bfaa67876d8 | function test_tutorial_coherence
% MEM 4500mb
% WALLTIME 00:20:00
% TEST test_tutorial_coherence
% TEST ft_freqanalysis ft_connectivityanalysis ft_multiplotER ft_singleplotER ft_topoplotER ft_sourceanalysis ft_sourceinterpolate ft_prepare_sourcemodel headsurface
addpath('/home/common/matlab/fieldtrip/data/ftp/tutori... |
github | lcnbeapp/beapp-master | inspect_qsubcellfun3.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/inspect_qsubcellfun3.m | 1,266 | utf_8 | 34dab50806cd673f776e8cd5752e5702 | function inspect_qsubcellfun3
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_qsubcellfun3
% TEST qsubcellfun qsubfeval qsubget
% this should not run in the automated batch, because the torque queue
% will be completely full with other jobs, causing this job to timeout
if isempty(which('qsubcellfun'))
[ftver, ftpath... |
github | lcnbeapp/beapp-master | test_printstruct.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_printstruct.m | 2,606 | utf_8 | a851c70161c6ff3f6b68993939ce7bca | function test_printstruct
% MEM 4096mb
% WALLTIME 00:20:00
% the above requirements are quite big, but this script is inherently
% unpredictable
numtests = 10;
fprintf('generating %d random deep nested structures to test printstruct() serialization\n', numtests);
for k = 1:numtests
% generate some deep structure
... |
github | lcnbeapp/beapp-master | test_bug2639.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug2639.m | 5,224 | utf_8 | c9dcca414ad6ef237af60845013ff6f9 | function test_bug2639
% TEST test_bug2639
% TEST ft_checkdata
% MEM 2gb
% WALLTIME 00:10:00
shufflechan = [1 3 2]';
channelcmb = {
'1' '2'
'1' '3'
'2' '3'
};
%%
freq1o = [];
freq1o.freq = 1;
freq1o.label = {'1', '2', '3'}';
freq1o.dimord = 'chan_freq';
freq1o.powspctrm = reshape([1 2 ... |
github | lcnbeapp/beapp-master | test_tutorial_headmodel_meg.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_tutorial_headmodel_meg.m | 1,927 | utf_8 | 8075bf65196420c5b808e6585988c6ee | function test_tutorial_headmodel_meg(datadir)
% MEM 2000mb
% WALLTIME 00:45:00
% TEST test_tutorial_headmodel_meg
% TEST ft_read_mri ft_volumesegment ft_prepare_headmodel ft_plot_vol
% TEST ft_convert_units ft_read_sens ft_plot_sens
% intial version by Lilla Magyari
if nargin==0
datadir = '/home/common/matlab/fiel... |
github | lcnbeapp/beapp-master | test_ft_freqanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_freqanalysis.m | 8,404 | utf_8 | 1befb77d0d1d1b8a05ebc8a98d591d04 | function test_ft_freqanalysis(datainfo, writeflag, version)
% MEM 8000mb
% WALLTIME 01:30:00
% TEST test_ft_freqanalysis
% TEST ft_freqanalysis ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
if nargin<1
datainfo = ref_datasets;
end
if narg... |
github | lcnbeapp/beapp-master | test_warning_once.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_warning_once.m | 1,458 | utf_8 | 2b8f09a3ad31a7f8ae5279e661006211 | function test_warning_once
% MEM 1500mb
% WALLTIME 00:10:00
ft_warning('-clear');
warning1 = 'hululu';
warning2 = 'aloah hey';
for i=1:2
[output] = evalc(['warning_caller(warning1, warning2)']);
w1size = strfind(output, warning1);
w2size = strfind(output, warning2);
if numel(w1size)~=2 || numel(w2size)~=2
... |
github | lcnbeapp/beapp-master | test_ft_connectivity_powcorr_ortho.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_connectivity_powcorr_ortho.m | 985 | utf_8 | ab81c598019efd18451700831a55be59 | function test_ft_connectivity_powcorr_ortho
% MEM 1500mb
% WALLTIME 00:10:00
% TEST: test_ft_connectivity_powcorr_ortho
% TEST: ft_connectivity_powcorr_ortho
mom1 = randn(1,100)+1i*randn(1,100);
mom2 = randn(1,100)+1i*randn(1,100);
c = ft_connectivity_powcorr_ortho([mom1;mom2], 'refindx', 1);
c = c(2,:);
[c1, c2] ... |
github | lcnbeapp/beapp-master | test_ft_timelockanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_timelockanalysis.m | 2,917 | utf_8 | 544f3d9ad6b049dc2e929a3fd9bf8ec1 | function test_ft_timelockanalysis(datainfo, writeflag, version)
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_ft_timelockanalysis
% ft_timelockanalysis ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
if nargin<1
datainfo = ref_datasets;
end
i... |
github | lcnbeapp/beapp-master | test_ft_prepare_mesh.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_prepare_mesh.m | 6,496 | utf_8 | 1509c54e1eea7cffc5bf32566f1d1a85 | function test_ft_prepare_mesh
% MEM 1500mb
% WALLTIME 00:10:00
% test ft_prepare_mesh also used for constructing SIMBIO FEM head models
% see also http://bugzilla.fcdonders.nl/show_bug.cgi?id=1815
% TEST test_ft_prepare_mesh
% TEST ft_prepare_mesh ft_datatype_segmentation ft_plot_mesh
%% segmentations
example.dim ... |
github | lcnbeapp/beapp-master | trialfun_affcog.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/trialfun_affcog.m | 1,267 | utf_8 | 559386a8dcd6b0a2b6966552240ca5f9 |
function [trl, event] = trialfun_affcog(cfg)
%% the first part is common to all trial functions
% read the header (needed for the samping rate) and the events
hdr = ft_read_header(cfg.headerfile);
event = ft_read_event(cfg.headerfile);
%% from here on it becomes specific to the experiment and the data fo... |
github | lcnbeapp/beapp-master | test_bug1397.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1397.m | 3,150 | utf_8 | 0a032e78d8becf9f7f3c7c25f069b8b3 | function test_bug1397
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_bug1397
% TEST ft_preprocessing ft_appenddata
% the following code was obtained from http://www.fieldtriptoolbox.org/tutorial/coherence
% on Wed Mar 28 15:36:40 CEST 2012
% find the interesting epochs of data
cfg = [];
% MODIFICATION, use trialfun h... |
github | lcnbeapp/beapp-master | test_bug1618.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_bug1618.m | 449 | utf_8 | 76ec9df5e64a5bca83b6011dbde758b8 | function test_suite = test_bug1618
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_bug1618
% add xunit to path
ft_hastoolbox('xunit',1);
initTestSuite; % for xUnit
function test_no_nan
% TODO: load example data, test for absence of NAN.
h = ft_read_header('data_bug1618/bug1618.dat');
h
h.chanunit
h.chantype... |
github | lcnbeapp/beapp-master | test_ft_crossfrequencyanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_crossfrequencyanalysis.m | 6,513 | utf_8 | d38e768a1f5937af96f9a351237c54a5 | function test_ft_crossfrequencyanalysis
% MEM 2gb
% WALLTIME 0:15:00
% TEST test_ft_crossfrequencyanalysis
% TEST ft_crossfrequencyanalysis
clear all;
close all;
%%%%%% generate simulation data %%%%%%%%%%%%%
% channels
N = 2;
s = zeros(N,4000);
for i = 1:N
num = 45; % number of alpha cyc... |
github | lcnbeapp/beapp-master | test_ft_selectdata.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_selectdata.m | 25,710 | utf_8 | 8c3047968d7baeba558f3d6580c426e9 | function test_ft_selectdata
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_ft_selectdata
% TEST ft_selectdata ft_selectdata_old ft_selectdata_new ft_appendfreq
timelock1 = [];
timelock1.label = {'1' '2'};
timelock1.time = 1:5;
timelock1.dimord = 'chan_time';
timelock1.avg = randn(2,5);
cfg = [];
cfg.channel = 1;
tim... |
github | lcnbeapp/beapp-master | test_ft_channelcombination.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_channelcombination.m | 7,145 | utf_8 | 92126b1e575f43f578016080f381e561 | function test_ft_channelcombination
% MEM 1500mb
% WALLTIME 00:10:00
% TEST test_ft_channelcombination
% TEST ft_channelcombination
% this function tests the new implementation of ft_channelcombination
load(fullfile(dccnpath('/home/common/matlab/fieldtrip/data/test/latest/raw/meg'),'preproc_ctf151.mat'));
label = d... |
github | lcnbeapp/beapp-master | test_ft_analysispipeline.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_analysispipeline.m | 2,685 | utf_8 | 9466e08ec41682a2c6b7afc284babec1 | function test_ft_analysispipeline
% MEM 1500mb
% WALLTIME 02:53:11
% TEST test_ft_analysispipeline
% TEST ft_analysispipeline
% the style of this test script is also used in test_ft_datatype and test_bug2185
global ft_default
ft_default.trackusage = 'no'; % this calls ft_analysispipeline more than 6000 times, those... |
github | lcnbeapp/beapp-master | test_ft_componentanalysis.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_componentanalysis.m | 3,273 | utf_8 | b0c2b5a3a4fc97828c4305a836bde27c | function test_ft_componentanalysis(datainfo, writeflag, version)
% MEM 2gb
% WALLTIME 00:10:00
% TEST test_ft_componentanalysis
% ft_componentanalysis ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
if nargin<1
datainfo = ref_datasets;
end
i... |
github | lcnbeapp/beapp-master | test_prepare_freq_matrices.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_prepare_freq_matrices.m | 15,003 | utf_8 | 08bea5d768d5aeaaa4ad0938cac4ce3b | function test_prepare_freq_matrices
% WALLTIME 00:10:00
% MEM 1000mb
% TEST test_prepare_freq_matrices
% TEST prepare_freq_matrices
% TEST ft_sourceanalysis
datadir = dccnpath('/home/common/matlab/fieldtrip/data/test/latest/freq/meg');
curdir = pwd;
cd(dccnpath('/home/common/matlab/fieldtrip'));
% fourier data, mu... |
github | lcnbeapp/beapp-master | test_ft_checkdata.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/test_ft_checkdata.m | 7,907 | utf_8 | 342cc383141a15f393ff7aedcbb493a4 | function test_ft_checkdata
% MEM 1500mb
% WALLTIME 00:20:00
% TEST test_ft_checkdata
% TEST ft_checkdata
%% converting raw data to timelock data
% make some raw data with unequal time-axis, excluding 0
data = [];
data.label = {'1', '2'};
for m=[eps exp(1) pi 1:20]
for n=.1:.1:m
data.time{1} = -.5:(n/m):-.1;
... |
github | lcnbeapp/beapp-master | getdimord.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/getdimord.m | 20,107 | utf_8 | 706f4f45a5d4ae7535c204b8c010f76b | function dimord = getdimord(data, field, varargin)
% GETDIMORD
%
% Use as
% dimord = getdimord(data, field)
%
% See also GETDIMSIZ, GETDATFIELD
if ~isfield(data, field) && isfield(data, 'avg') && isfield(data.avg, field)
field = ['avg.' field];
elseif ~isfield(data, field) && isfield(data, 'trial') && isfield(dat... |
github | lcnbeapp/beapp-master | normals.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/normals.m | 2,528 | utf_8 | 96701c7ebda7e6efca8095b3adb6081c | function [nrm] = normals(pnt, tri, opt)
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% [nrm] = normals(pnt, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fiel... |
github | lcnbeapp/beapp-master | csp.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/csp.m | 1,702 | utf_8 | 3eb6c73192bc8163344c9b5e70a04877 | function [W] = csp(C1, C2, m)
% CSP calculates the common spatial pattern (CSP) projection.
%
% Use as:
% [W] = csp(C1, C2, m)
%
% This function implements the intents of the CSP algorithm described in [1].
% Specifically, CSP finds m spatial projections that maximize the variance (or
% band power) in one condition (... |
github | lcnbeapp/beapp-master | hcp_dirlist.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/hcp_dirlist.m | 1,228 | utf_8 | b0501179c448a08e78e771ff578fa072 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% SUBFUNCTION
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [list, numdirs, numfiles] = hcp_dirlist(basedir, recursive)
if nargin<2
recursive = true;
end
if ~isdir(basedir)
error('directory "%s" does not exist', basedir)
end
list = dir... |
github | lcnbeapp/beapp-master | ft_platform_supports.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/ft_platform_supports.m | 9,557 | utf_8 | eb0e55d84d57e6873cce8df6cad90d96 | function tf = ft_platform_supports(what,varargin)
% FT_PLATFORM_SUPPORTS returns a boolean indicating whether the current platform
% supports a specific capability
%
% Usage:
% tf = ft_platform_supports(what)
% tf = ft_platform_supports('matlabversion', min_version, max_version)
%
% The following values are allowe... |
github | lcnbeapp/beapp-master | ft_warning.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/ft_warning.m | 7,789 | utf_8 | d832a7ad5e2f9bb42995e6e5d4caa198 | function [ws, warned] = ft_warning(varargin)
% FT_WARNING will throw a warning for every unique point in the
% stacktrace only, e.g. in a for-loop a warning is thrown only once.
%
% Use as one of the following
% ft_warning(string)
% ft_warning(id, string)
% Alternatively, you can use ft_warning using a timeout
% ... |
github | lcnbeapp/beapp-master | benchmark.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/benchmark.m | 3,925 | utf_8 | c57855145ed5e0e6dcce46f2eac7ad03 | function benchmark(funname, argname, argval, m_array, n_array, niter, varargin)
% BENCHMARK a given function
%
% Use as
% benchmark(funname, argname, argval, m_array, n_array, niter, ...)
%
% Optional input arguments should come in key-value pairs and may include
% feedback = none, figure, text, table, all
% ... |
github | lcnbeapp/beapp-master | identical.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/identical.m | 6,335 | utf_8 | 75a144da8012630d9a34dca990228677 | function [ok, message] = identical2(a, b, varargin)
% IDENTICAL compares two input variables and returns 1/0
% and a message containing the details on the observed difference.
%
% Use as
% [ok, message] = identical(a, b)
% [ok, message] = identical(a, b, ...)
%
% This works for all possible input variables a and b... |
github | lcnbeapp/beapp-master | getdimsiz.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/getdimsiz.m | 2,235 | utf_8 | 340d495a654f2f6752aa1af7ac915390 | function dimsiz = getdimsiz(data, field)
% GETDIMSIZ
%
% Use as
% dimsiz = getdimsiz(data, field)
%
% If the length of the vector that is returned is smaller than the
% number of dimensions that you would expect from GETDIMORD, you
% should assume that it has trailing singleton dimensions.
%
% Example use
% dimord... |
github | lcnbeapp/beapp-master | hcp_filelist.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/test/private/hcp_filelist.m | 447 | utf_8 | 71aed91ab0ef231e13aba8c62e7b1661 |
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% SUBFUNCTION
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function list = hcp_filelist(basedir)
dirlist = hcp_dirlist(basedir, true);
dirlist{end+1} = basedir;
list = {};
for i=1:length(dirlist)
f = dir(dirlist{i});
f = f(~[f.isdir]);
f = {... |
github | lcnbeapp/beapp-master | beamformer_pcc.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/beamformer_pcc.m | 13,262 | utf_8 | c6189828cfd87b980fb6d6c6f69ae63d | function [dipout] = beamformer_pcc(dip, grad, headmodel, dat, Cf, varargin)
% BEAMFORMER_PCC implements an experimental beamformer based on partial
% canonical correlations or coherences. Dipole locations that are outside
% the head will return a NaN value.
%
% Use as
% [dipout] = beamformer_pcc(dipin, grad, headmod... |
github | lcnbeapp/beapp-master | beamformer_dics.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/beamformer_dics.m | 26,041 | utf_8 | d4c1f578b6725dbeb67c9a09c2ae2dd0 | function [dipout] = beamformer_dics(dip, grad, headmodel, dat, Cf, varargin)
% BEAMFORMER_DICS scans on pre-defined dipole locations with a single dipole
% and returns the beamformer spatial filter output for a dipole on every
% location. Dipole locations that are outside the head will return a
% NaN value.
%
% Use as... |
github | lcnbeapp/beapp-master | ft_sloreta.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/ft_sloreta.m | 16,166 | utf_8 | 80ba97c0f6bbf9828825f37d58664d9f | function [dipout] = ft_sloreta(dip, grad, headmodel, dat, Cy, varargin)
% ft_sloreta scans on pre-defined dipole locations with a single dipole
% and returns the sLORETA spatial filter output for a dipole on every
% location. Dipole locations that are outside the head will return a
% NaN value. Adapted from beamformer... |
github | lcnbeapp/beapp-master | beamformer_lcmv.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/beamformer_lcmv.m | 17,369 | utf_8 | 2cfd8f53b59635586786d35fb121f695 | function [dipout] = beamformer_lcmv(dip, grad, headmodel, dat, Cy, varargin)
% BEAMFORMER_LCMV scans on pre-defined dipole locations with a single dipole
% and returns the beamformer spatial filter output for a dipole on every
% location. Dipole locations that are outside the head will return a
% NaN value.
%
% Use as... |
github | lcnbeapp/beapp-master | dipole_fit.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/dipole_fit.m | 14,489 | utf_8 | b89f3d077a26265e017c4fd90d2fb7ac | function [dipout] = dipole_fit(dip, sens, headmodel, dat, varargin)
% DIPOLE_FIT performs an equivalent current dipole fit with a single
% or a small number of dipoles to explain an EEG or MEG scalp topography.
%
% Use as
% [dipout] = dipole_fit(dip, sens, headmodel, dat, ...)
%
% Additional input arguments should b... |
github | lcnbeapp/beapp-master | mesh_spectrum.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/private/mesh_spectrum.m | 1,370 | utf_8 | 94ec5a0ad9c740bd99c6d6a415702be9 | % Mesh spectrum
function [L,H,d] = mesh_spectrum(S,n,varargin)
%[L,H,d] = ct_mesh_spectrum(S,n,mode)
% Compute the mesh laplace matrix and its spectrum
% input,
% S: mesh file, it has to have a pnt and a tri field
% n: number of mesh harmonic functions
% mode: 'full' for the full graph, 'half' if you want to do the f... |
github | lcnbeapp/beapp-master | ft_hastoolbox.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/private/ft_hastoolbox.m | 24,831 | utf_8 | 43bae19e25ce108f013f1c401e497630 | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | lcnbeapp/beapp-master | ft_inverse_beamformer_dics.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/fieldtrip-20160917/inverse/new/ft_inverse_beamformer_dics.m | 13,353 | utf_8 | 79c230d4fcdc8529ee9f1f03b205f5fd | function [estimate] = ft_inverse_beamformer_dics(leadfield, Cf, varargin)
% FT_INVERSE_BEAMFORMER_DICS estimates the source power or source
% coherence according to the Dynamic Imaging of Coherent Sources
% method.
%
% Use as
% estimate = ft_inverse_beamformer_dics(leadfield, Cf, ...)
% where
% leadfield = leadfi... |
github | lcnbeapp/beapp-master | FASTER_GUI.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/FASTER_GUI.m | 36,087 | utf_8 | d1fce591456e8b19817ecca7674bdfc3 | % FASTER GUI v1.2.1b - see manual for help.
function varargout=FASTER_GUI(varargin)
% Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity
% College Dublin,
% Ireland
% nolanhu@tcd.ie, robert.whelan@tcd.ie
%
% This program is free software; you can redistribute it and/or modify
% it under the term... |
github | lcnbeapp/beapp-master | h_epoch_interp_spl.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/h_epoch_interp_spl.m | 5,579 | utf_8 | b3f72af0ca562a5a7d2b9cd9eca573ff | % Edit to the EEGLAB interpolation function to interpolate different
% channels within each epoch
% Cleaned up and removed irrelevant sections.
%
% Additions Copyright (C) 2010 Hugh Nolan, Robert Whelan and Richard Reilly, Trinity College Dublin,
% Ireland
%
% Based on:
%
% eeg_interp() - interpolate data channels
%
% ... |
github | lcnbeapp/beapp-master | eegplugin_FASTER.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/eegplugin_FASTER.m | 2,551 | utf_8 | 98ac92883268851cbb74b2daa08b7c98 | % eegplugin_FASTER() - EEGLAB plugin for using FASTER processing on EEG datasets
%
% Usage:
% >> eegplugin_FASTER(fig, trystrs, catchstrs);
%
% Inputs:
% fig - [integer] EEGLAB figure
% trystrs - [struct] "try" strings for menu callbacks.
% catchstrs - [struct] "catch" strings for menu callbacks.
%
... |
github | lcnbeapp/beapp-master | h_eeg_interp_spl.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/h_eeg_interp_spl.m | 5,078 | utf_8 | 887ab5def593310f45ee7c583ca04292 | % Small edits to the EEGLAB file
% Cleaned up and removed irrelevant sections.
%
% eeg_interp() - interpolate data channels
%
% Usage: EEGOUT = eeg_interp(EEG, badchans, method);
%
% Inputs:
% EEG - EEGLAB dataset
% badchans - [integer array] indices of channels to interpolate.
% For instanc... |
github | lcnbeapp/beapp-master | h_reref.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/h_reref.m | 12,057 | utf_8 | f9190302954232bfa533a4bb51c9ca87 | % Small edits to the EEGLAB file
%
% reref() - convert common reference EEG data to some other common reference
% or to average reference
% Usage:
% >> Dataout = reref(data); % convert all channels to average reference
% >> [Dataout Chanlocs] = reref(data, refchan, 'key', 'val');
% ... |
github | lcnbeapp/beapp-master | h_pop_reref.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/h_pop_reref.m | 14,783 | utf_8 | 363e04d93bd0a84d86aea7f1fb86d6e1 | % Small edits to the EEGLAB file
%
% pop_reref() - Convert an EEG dataset to average reference or to a
% new common reference channel (or channels). Calls reref().
% Usage:
% >> EEGOUT = pop_reref( EEG ); % pop up interactive window
% >> EEGOUT = pop_reref( EEG, ref, 'key', 'val' ...);
%
% Gra... |
github | lcnbeapp/beapp-master | hurst_exponent.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/hurst_exponent.m | 1,324 | utf_8 | f2772282eef28b3eeec78642c5fd889e | % The Hurst exponent
%--------------------------------------------------------------------------
% This function does dispersional analysis on a data series, then does a
% Matlab polyfit to a log-log plot to estimate the Hurst exponent of the
% series.
%
% This algorithm is far faster than a full-blown implementation... |
github | lcnbeapp/beapp-master | firws.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/firws.m | 3,227 | utf_8 | 3d732467f46f18c70fca51f36feabfd4 | %firws() - Designs windowed sinc type I linear phase FIR filter
%
% Usage:
% >> b = firws(m, f);
% >> b = firws(m, f, w);
% >> b = firws(m, f, t);
% >> b = firws(m, f, t, w);
%
% Inputs:
% m - filter order (mandatory even)
% f - vector or scalar of cutoff frequency/ies (-6 dB;
% pi rad / sample)
%
% O... |
github | lcnbeapp/beapp-master | pop_firma.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_firma.m | 3,364 | utf_8 | 4e1fb5835a4bfa56f8b8ad7d6ed377c1 | % pop_firma() - Filter data using moving average FIR filter
%
% Usage:
% >> [EEG, com] = pop_firma(EEG); % pop-up window mode
% >> [EEG, com] = pop_firma(EEG, 'forder', order);
%
% Inputs:
% EEG - EEGLAB EEG structure
% 'forder' - scalar filter order. Mandatory even
%
% Outputs:
% EEG - filtered ... |
github | lcnbeapp/beapp-master | pop_firpm.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_firpm.m | 7,905 | utf_8 | 18b20a1644f32aa46e8fdad8b3ca5149 | % pop_firpm() - Filter data using Parks-McClellan FIR filter
%
% Usage:
% >> [EEG, com, b] = pop_firpm(EEG); % pop-up window mode
% >> [EEG, com, b] = pop_firpm(EEG, 'key1', value1, 'key2', ...
% value2, 'keyn', valuen);
%
% Inputs:
% EEG - EEGLAB EEG structure
% 'fcutoff' -... |
github | lcnbeapp/beapp-master | pop_eegfiltnew.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_eegfiltnew.m | 6,988 | utf_8 | 192e6c0679f44e762fb295fe7898d611 | % pop_eegfiltnew() - Filter data using Hamming windowed sinc FIR filter
%
% Usage:
% >> [EEG, com, b] = pop_eegfiltnew(EEG); % pop-up window mode
% >> [EEG, com, b] = pop_eegfiltnew(EEG, locutoff, hicutoff, filtorder,
% revfilt, usefft, plotfreqz);
%
% Inputs:
% EEG - EEG... |
github | lcnbeapp/beapp-master | pop_xfirws.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_xfirws.m | 10,433 | utf_8 | e50f8473a53547e08ecf35bde0822a84 | % pop_xfirws() - Design and export xfir compatible windowed sinc FIR filter
%
% Usage:
% >> pop_xfirws; % pop-up window mode
% >> [b, a] = pop_xfirws; % pop-up window mode
% >> pop_xfirws('key1', value1, 'key2', value2, 'keyn', valuen);
% >> [b, a] = pop_xfirws('key1', value1, 'key2', value2, 'keyn', valuen);
%... |
github | lcnbeapp/beapp-master | eegplugin_firfilt.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/eegplugin_firfilt.m | 2,623 | utf_8 | e2cbc71201334f670b757782339a1a16 | % eegplugin_firfilt() - EEGLAB plugin for filtering data using linear-
% phase FIR filters
%
% Usage:
% >> eegplugin_firfilt(fig, trystrs, catchstrs);
%
% Inputs:
% fig - [integer] EEGLAB figure
% trystrs - [struct] "try" strings for menu callbacks.
% catchstrs - [struct] "catc... |
github | lcnbeapp/beapp-master | windows.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/windows.m | 2,884 | utf_8 | d5dd1dd418a0157f1d74aa637483adbb | % windows() - Returns handle to window function or window
%
% Usage:
% >> h = windows(t);
% >> h = windows(t, m);
% >> h = windows(t, m, a);
%
% Inputs:
% t - char array 'rectangular', 'bartlett', 'hann', 'hamming',
% 'blackman', 'blackmanharris', or 'kaiser'
%
% Optional inputs:
% m - scalar window len... |
github | lcnbeapp/beapp-master | pop_firpmord.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_firpmord.m | 2,985 | utf_8 | 43d544f8a2934971e0ff4943c503d958 | % pop_firpmord() - Estimate Parks-McClellan filter order and weights
%
% Usage:
% >> [m, wtpass, wtstop] = pop_firpmord(f, a); % pop-up window mode
% >> [m, wtpass, wtstop] = pop_firpmord(f, a, dev);
% >> [m, wtpass, wtstop] = pop_firpmord(f, a, dev, fs);
%
% Inputs:
% f - vector frequency band edges
% ... |
github | lcnbeapp/beapp-master | firfilt.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/firfilt.m | 4,314 | utf_8 | a73172ef5f6e0bf92a874f207472f213 | % firfilt() - Pad data with DC constant, filter data with FIR filter,
% and shift data by the filter's group delay
%
% Usage:
% >> EEG = firfilt(EEG, b, nFrames);
%
% Inputs:
% EEG - EEGLAB EEG structure
% b - vector of filter coefficients
%
% Optional inputs:
% nFrames -... |
github | lcnbeapp/beapp-master | pop_firws.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_firws.m | 9,357 | utf_8 | b9d85da74165773f413cbb09e6f4ae29 | % pop_firws() - Filter data using windowed sinc FIR filter
%
% Usage:
% >> [EEG, com, b] = pop_firws(EEG); % pop-up window mode
% >> [EEG, com, b] = pop_firws(EEG, 'key1', value1, 'key2', ...
% value2, 'keyn', valuen);
%
% Inputs:
% EEG - EEGLAB EEG structure
% 'fcutoff' - v... |
github | lcnbeapp/beapp-master | plotfresp.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/plotfresp.m | 3,628 | utf_8 | 76c9766074bc2ceaea8414f8be2bee6d | % plotfresp() - Plot FIR filter's impulse, step, frequency, magnitude,
% and phase response
%
% Usage:
% >> plotfresp(b, a, n, fs);
%
% Inputs:
% b - vector filter coefficients
%
% Optional inputs:
% a - currently unused, reserved for future compatibility with IIR
% filters {defaul... |
github | lcnbeapp/beapp-master | pop_firwsord.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_firwsord.m | 5,357 | utf_8 | c13d3b977f890fd6703ddf1e8c6528f5 | % pop_firwsord() - Estimate windowed sinc filter order depending on
% window type and requested transition band width
%
% Usage:
% >> [m, dev] = pop_firwsord; % pop-up window mode
% >> m = pop_firwsord(wtype, fs, df);
% >> m = pop_firwsord('kaiser', fs, df, dev);
%
% Inputs:
% wtype - char arra... |
github | lcnbeapp/beapp-master | pop_kaiserbeta.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/pop_kaiserbeta.m | 2,323 | utf_8 | 7dd46855b195aba93c307d7b61185ad1 | % pop_kaiserbeta() - Estimate Kaiser window beta
%
% Usage:
% >> [beta, dev] = pop_kaiserbeta; % pop-up window mode
% >> beta = pop_kaiserbeta(dev);
%
% Inputs:
% dev - scalar maximum passband deviation/ripple
%
% Output:
% beta - scalar Kaiser window beta
% dev - scalar maximum passband devi... |
github | lcnbeapp/beapp-master | findboundaries.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/FASTER/firfilt1.5.1/firfilt1.5.1/findboundaries.m | 1,875 | utf_8 | 1cf26fcfa1c97aa8a5201a81c4a63bc2 | % findboundaries() - Find boundaries (data discontinuities) in event
% structure of continuous EEG dataset
%
% Usage:
% >> boundaries = findboundaries(EEG.event);
%
% Inputs:
% EEG.event - EEGLAB EEG event structure
%
% Outputs:
% boundaries - scalar or vector of boundary event latencies... |
github | lcnbeapp/beapp-master | firfiltdcpadded.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/firfiltdcpadded.m | 2,137 | utf_8 | b21b4207bf032e32cc6f0597db3cb4fe | % firfiltdcpadded() - Pad data with DC constant and filter
%
% Usage:
% >> data = firfiltdcpadded(data, b, causal);
%
% Inputs:
% data - raw data
% b - vector of filter coefficients
% causal - boolean perform causal filtering {default 0}
%
% Outputs:
% data - smoothed data
%
% Note:
% f... |
github | lcnbeapp/beapp-master | minphaserceps.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/minphaserceps.m | 1,275 | utf_8 | 7b751637e7eed71e29f91a4ef6b586e6 | % rcepsminphase() - Convert FIR filter coefficient to minimum phase
%
% Usage:
% >> b = minphaserceps(b);
%
% Inputs:
% b - FIR filter coefficients
%
% Outputs:
% bMinPhase - minimum phase FIR filter coefficients
%
% Author: Andreas Widmann, University of Leipzig, 2013
%
% References:
% [1] Smith III, O. J. (20... |
github | lcnbeapp/beapp-master | firws.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/firws.m | 3,219 | utf_8 | 0ab4c517238d31712ba1d97ab2497f45 | %firws() - Designs windowed sinc type I linear phase FIR filter
%
% Usage:
% >> b = firws(m, f);
% >> b = firws(m, f, w);
% >> b = firws(m, f, t);
% >> b = firws(m, f, t, w);
%
% Inputs:
% m - filter order (mandatory even)
% f - vector or scalar of cutoff frequency/ies (-6 dB;
% pi rad / sample)
%
% O... |
github | lcnbeapp/beapp-master | pop_firma.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/pop_firma.m | 3,356 | utf_8 | e6d49147b8406a5ac3fed31ab0809194 | % pop_firma() - Filter data using moving average FIR filter
%
% Usage:
% >> [EEG, com] = pop_firma(EEG); % pop-up window mode
% >> [EEG, com] = pop_firma(EEG, 'forder', order);
%
% Inputs:
% EEG - EEGLAB EEG structure
% 'forder' - scalar filter order. Mandatory even
%
% Outputs:
% EEG - filtered ... |
github | lcnbeapp/beapp-master | pop_firpm.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/pop_firpm.m | 7,885 | utf_8 | c7719de703135804f12c5877e899956b | % pop_firpm() - Filter data using Parks-McClellan FIR filter
%
% Usage:
% >> [EEG, com, b] = pop_firpm(EEG); % pop-up window mode
% >> [EEG, com, b] = pop_firpm(EEG, 'key1', value1, 'key2', ...
% value2, 'keyn', valuen);
%
% Inputs:
% EEG - EEGLAB EEG structure
% 'fcutoff' -... |
github | lcnbeapp/beapp-master | pop_eegfiltnew.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/pop_eegfiltnew.m | 8,458 | utf_8 | 568c652401a53a0b370d55e248775e5a | % pop_eegfiltnew() - Filter data using Hamming windowed sinc FIR filter
%
% Usage:
% >> [EEG, com, b] = pop_eegfiltnew(EEG); % pop-up window mode
% >> [EEG, com, b] = pop_eegfiltnew(EEG, locutoff, hicutoff, filtorder,
% revfilt, usefft, plotfreqz, minphase);
%
% Inputs:
% EEG ... |
github | lcnbeapp/beapp-master | pop_xfirws.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/pop_xfirws.m | 10,425 | utf_8 | d0777a1329eeb3b766e505a0b61242c9 | % pop_xfirws() - Design and export xfir compatible windowed sinc FIR filter
%
% Usage:
% >> pop_xfirws; % pop-up window mode
% >> [b, a] = pop_xfirws; % pop-up window mode
% >> pop_xfirws('key1', value1, 'key2', value2, 'keyn', valuen);
% >> [b, a] = pop_xfirws('key1', value1, 'key2', value2, 'keyn', valuen);
%... |
github | lcnbeapp/beapp-master | firfiltsplit.m | .m | beapp-master/Packages/eeglab14_1_2b/plugins/firfilt1.6.2/firfiltsplit.m | 2,363 | utf_8 | 8e58b4fa2694a8b1d55b8fcddcf94b4f | % firfiltsplit() - Split data at discontinuities and forward to dc padded
% filter function
%
% Usage:
% >> EEG = firfiltsplit(EEG, b);
%
% Inputs:
% EEG - EEGLAB EEG structure
% b - vector of filter coefficients
% causal - scalar boolean perform causal filtering {d... |
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