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github | lcnhappe/happe-master | efficiency.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/bct/efficiency.m | 1,888 | utf_8 | 6f4bd3c62d773c46f3e2ac7d16e67a86 | function E=efficiency(G,local)
%EFFICIENCY Global efficiency, local efficiency.
%
% Eglob = efficiency(A);
% Eloc = efficiency(A,1);
%
% The global efficiency is the average of inverse shortest path length,
% and is inversely related to the characteristic path length.
%
% The local efficiency is the glob... |
github | lcnhappe/happe-master | generative_model.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/bct/generative_model.m | 23,153 | utf_8 | dd5cd182d827c9ede9fb54855b0cafd8 | function b = generative_model(A,D,m,modeltype,modelvar,params,epsilon)
%GENERATIVE_MODEL run generative model code
%
% B = GENERATIVE_MODEL(A,D,m,modeltype,modelvar,params)
%
% Generates synthetic networks using the models described in the study by
% Betzel et al (2016) in Neuroimage.
%
% Inputs:
% ... |
github | lcnhappe/happe-master | evaluate_generative_model.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/bct/evaluate_generative_model.m | 3,625 | utf_8 | 6c6df608db42f67c0908af434bff6aca | function [B,E,K] = evaluate_generative_model(A,Atgt,D,modeltype,modelvar,params)
% EVALUATE_GENERATIVE_MODEL generate and evaluate synthetic networks
%
% [B,E,K] = EVALUATE_GENERATIVE_MODEL(A,Atgt,D,m,modeltype,modelvar,params)
%
% Generates synthetic networks and evaluates their energy function (see
% below... |
github | lcnhappe/happe-master | make_motif34lib.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/bct/make_motif34lib.m | 2,838 | utf_8 | 68f4ca45316fc99ab16adbd5bda80236 | function make_motif34lib
%MAKE_MOTIF34LIB Auxiliary motif library function
%
% make_motif34lib;
%
% This function generates the motif34lib.mat library required for all
% other motif computations.
%
%
% Mika Rubinov, UNSW, 2007-2010
%#ok<*ASGLU>
[M3,M3n,ID3,N3]=motif3generate;
[M4,M4n,ID4,N4]=motif4gen... |
github | lcnhappe/happe-master | LoadBinary.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/LoadBinary.m | 9,722 | iso_8859_13 | ac6b47d239db8b0b4e76bb90c8d6263b | function data = LoadBinary(filename,varargin)
%LoadBinary - Load data from a multiplexed binary file.
%
% Reading a subset of the data can be done in two different manners: either
% by specifying start time and duration (more intuitive), or by indicating
% the position and size of the subset in terms of number of r... |
github | lcnhappe/happe-master | isivector.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isivector.m | 2,128 | iso_8859_13 | 1468dbe277d48ba93d39a34470a2a792 | %isivector - Test if parameter is a vector of integers satisfying an optional list of tests.
%
% USAGE
%
% test = isivector(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests (see examples below)
%
% EXAMPLES
%
% % Test if x is a vector of doubles
% ... |
github | lcnhappe/happe-master | isradians.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isradians.m | 1,179 | iso_8859_13 | b6d8ed7786fab2bd646134c1424d8304 | %isradians - Test if parameter is in range [0,2pi] or [-pi,pi].
%
% USAGE
%
% test = isradians(x)
%
% x array to test (NaNs are ignored)
%
% OUTPUT
%
% range 0 if uncertain (issues a warning)
% 1 for [-pi,pi]
% 2 for [0,2pi]
% SEE ALSO
%
% See als... |
github | lcnhappe/happe-master | isiscalar.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isiscalar.m | 1,623 | iso_8859_13 | 6b14f01efdb2893077da44a97760eecd | %isiscalar - Test if parameter is a scalar (integer) satisfying an optional list of tests.
%
% USAGE
%
% test = isiscalar(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a scalar (double)
% isiscalar(x)
%
% % ... |
github | lcnhappe/happe-master | islvector.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/islvector.m | 1,685 | iso_8859_13 | 0dfac49b5831a12166d7cfbeafcd5445 | %islvector - Test if parameter is a (pseudo) logical vector satisfying an optional list of tests.
%
% USAGE
%
% test = islvector(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests (see examples below)
%
% EXAMPLES
%
% % Test if x is a logical vector
... |
github | lcnhappe/happe-master | wrap.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/wrap.m | 974 | iso_8859_13 | 9fba4315faafeb5a9184f843e7593872 | %wrap - Set radian angles in range [0,2pi] or [-pi,pi].
%
% USAGE
%
% y = wrap(x,range)
%
% x angles in radians
% range optional: 1 for [-pi,pi] (default)
% 2 for [0,2pi]
%
% SEE ALSO
%
% See also isradians.
%
% Copyright (C) 2010-2011 by Michaël Zugaro... |
github | lcnhappe/happe-master | isimatrix.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isimatrix.m | 1,711 | iso_8859_13 | 301153c731a86f3cf9ab2cd3471a5d60 | %isimatrix - Test if parameter is a matrix of integers (>= 2 columns).
%
% USAGE
%
% test = isimatrix(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a matrix of doubles
% isimatrix(x)
%
% % Test if x is a mat... |
github | lcnhappe/happe-master | islscalar.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/islscalar.m | 1,077 | iso_8859_13 | af0d9269f1590dee3176575b0083aced | %islscalar - Test if parameter is a (pseudo) logical scalar.
%
% USAGE
%
% test = islscalar(x)
%
% x parameter to test
%
% NOTE
%
% To be considered logical, the scalar should be equal to 0 or 1, but it does
% not need to actually be of class 'logical' (class(x) could be e.g. 'double').
%
% ... |
github | lcnhappe/happe-master | isdvector.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isdvector.m | 2,081 | iso_8859_13 | 5ef70521f0fa1b770ada8d42d0fe9bee | %isdvector - Test if parameter is a vector of doubles satisfying an optional list of tests.
%
% USAGE
%
% test = isdvector(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests (see examples below)
%
% EXAMPLES
%
% % Test if x is a vector of doubles
% ... |
github | lcnhappe/happe-master | isstring.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isstring.m | 992 | iso_8859_13 | 3f0150034c5c2e51b50c80fc3828fd12 | %isstring - Test if parameter is an (admissible) character string.
%
% USAGE
%
% test = isstring(x,string1,string2,...)
%
% x item to test
% string1... optional list of admissible strings
%
% SEE ALSO
%
% See also isdmatrix, isdvector, isdscalar, isimatrix, isivector, isiscalar.
%
% Copy... |
github | lcnhappe/happe-master | islmatrix.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/islmatrix.m | 1,149 | iso_8859_13 | 2e0a52b0be376a939b2c68ef383358b2 | %islmatrix - Test if parameter is a logical matrix (>= 2 columns).
%
% USAGE
%
% test = islmatrix(x)
%
% x parameter to test
%
% NOTE
%
% To be considered logical, the matrix should contain only values 0 and 1, but it
% does not need to actually be of class 'logical' (class(x) could be e.g. '... |
github | lcnhappe/happe-master | isdscalar.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isdscalar.m | 1,575 | iso_8859_13 | 01e7b8dfec919c2f708c7a25d96262e3 | %isdscalar - Test if parameter is a scalar (double) satisfying an optional list of tests.
%
% USAGE
%
% test = isdscalar(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a scalar (double)
% isdscalar(x)
%
% % T... |
github | lcnhappe/happe-master | isdmatrix.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neuroscope/private/isdmatrix.m | 1,656 | iso_8859_13 | ba7943baf9c16023dd749f34097850df | %isdmatrix - Test if parameter is a matrix of doubles (>= 2 columns).
%
% USAGE
%
% test = isdmatrix(x,test1,test2,...)
%
% x parameter to test
% test1... optional list of additional tests
%
% EXAMPLES
%
% % Test if x is a matrix of doubles
% isdmatrix(x)
%
% % Test if x is a matr... |
github | lcnhappe/happe-master | readneuronedata.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/readneuronedata.m | 3,668 | utf_8 | 8b13da2d37c92187282b24464ba2d0cf | % readneuronedata() - Read NeurOne Binary files
%
% Usage: >> data = readneuronedata(dataFiles,nChannels,chans)
%
% ===================================================================
% Inputs:
% dataFiles - A cell structure containing full paths for data
% files to be read. Th... |
github | lcnhappe/happe-master | pop_readneurone.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/pop_readneurone.m | 8,116 | utf_8 | c755af0f65d561b1d3adaa77368be5ff | % pop_readneurone() - A function for reading NeurOne data.
%
% Usage: >> [EEGOUT,command] = pop_readneurone() % Launches GUI for user input
% OR
% >> [EEGOUT,command] = pop_readneurone(dataPath, sessionPhaseNumber, chans)
%
% Please note that if this function is called without using the menu item
% in EEGL... |
github | lcnhappe/happe-master | eegplugin_neurone.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/eegplugin_neurone.m | 1,598 | utf_8 | 1b5fe8ed27d31f4de4608dd4b652f905 | % eegplugin_neurone() - EEGLAB plugin to import data from a NeurOne device.
%
% Usage:
% >> eegplugin_neurone(fig,try_strings,catch_strings)
%
% Inputs:
% fig - [integer] handle to EEGLAB figure
% try_strings - [struct] "try" strings for menu callbacks.
% catch_strings - [struct] "catch" string... |
github | lcnhappe/happe-master | readneuroneevents.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/readneuroneevents.m | 4,947 | utf_8 | b51f19a943ed465494de552dfeb3b250 | % readneuroneevents() - Read events from a Mega NeurOne device.
%
% Usage: >> event = readneuroneevents(dataPath)
%
% =======================================================================
% Input:
% dataPath - Direct path for the folder containing the event
% data (file 'ev... |
github | lcnhappe/happe-master | readneurone.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/readneurone.m | 11,773 | utf_8 | cf4bc45088b4719e91b7b6b87c7300f1 | % readneurone() - Read data from a Mega NeurOne device and arrange it
% into a struct.
%
% Usage: >> NEURONE = readneurone(dataPath, sessionPhaseNumber, chans)
%
% =======================================================================
% Inputs:
% dataPath - Path to directory conta... |
github | lcnhappe/happe-master | guireadneurone.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/neurone/guireadneurone.m | 4,818 | utf_8 | 88c8053fef247ef0eff9f0bcd3992657 | function varargout = guireadneurone(varargin)
% GUIREADNEURONE Application M-file for guireadneurone.fig
% FIG = GUIREADNEURONE launch guireadneurone GUI.
% GUIREADNEURONE('callback_name', ...) invoke the named callback.
%
% ========================================================================
% NOTE:
% This f... |
github | lcnhappe/happe-master | floatread.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/floatread.m | 5,572 | utf_8 | 942a49968bcce849dfc9d359ac7d2651 | % floatread() - Read matrix from float file ssuming four byte floating point number
% Can use fseek() to read an arbitary (continguous) submatrix.
%
% Usage: >> a = floatread(filename,size,'format',offset)
%
% Inputs:
% filename - name of the file
% size - determine the number of float ele... |
github | lcnhappe/happe-master | floatwrite.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/floatwrite.m | 3,169 | utf_8 | 8472e61c3208f7a445ec052e9cc52b4b | % floatwrite() - Write data matrix to float file.
%
% Usage: >> floatwrite(data,filename, 'format')
%
% Inputs:
% data - write matrix data to specified file as four-byte floating point numbers.
% filename - name of the file
% 'format' - The option FORMAT argument specifies the storage format as
% ... |
github | lcnhappe/happe-master | eeglab2fieldtrip.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/eeglab2fieldtrip.m | 5,477 | utf_8 | bdb52aada07dc61861584ca6a70c7482 | % eeglab2fieldtrip() - do this ...
%
% Usage: >> data = eeglab2fieldtrip( EEG, fieldbox, transform );
%
% Inputs:
% EEG - [struct] EEGLAB structure
% fieldbox - ['preprocessing'|'freqanalysis'|'timelockanalysis'|'companalysis']
% transform - ['none'|'dipfit'] transform channel locations for DIPFIT
% ... |
github | lcnhappe/happe-master | sobi.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/sobi.m | 5,094 | utf_8 | ce6035ad7a3d7312fee7cf1a37d8e04e | % sobi() - Second Order Blind Identification (SOBI) by joint diagonalization of
% correlation matrices. THIS CODE ASSUMES TEMPORALLY CORRELATED SIGNALS,
% and uses correlations across times in performing the signal separation.
% Thus, estimated time delayed covariance matrices must be nonsi... |
github | lcnhappe/happe-master | varimax.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/varimax.m | 4,437 | utf_8 | d87cb189d37524e4920c2f9ad9c41aa4 | % varimax() - Perform orthogonal Varimax rotation on rows of a data
% matrix.
%
% Usage: >> V = varimax(data);
% >> [V,rotdata] = varimax(data,tol);
% >> [V,rotdata] = varimax(data,tol,'noreorder')
%
% Inputs:
% data - data matrix
% tol - set the termination tolerance to ... |
github | lcnhappe/happe-master | pcsquash.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/pcsquash.m | 2,802 | utf_8 | 9e0a0372b72b09c731ef70785b8ce862 | % pcsquash() - compress data using Principal Component Analysis (PCA)
% into a principal component subspace. To project back
% into the original channel space, use pcexpand()
%
% Usage:
% >> [eigenvectors,eigenvalues] = pcsquash(data,ncomps);
% >> [eigenvectors,eigenvalues,com... |
github | lcnhappe/happe-master | binica.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/binica.m | 13,069 | utf_8 | e1bfb70b5edae53d01116b6f9cf42d51 | % binica() - Run stand-alone binary version of runica() from the
% Matlab command line. Saves time and memory relative
% to runica(). If stored in a float file, data are not
% read into Matlab, and so may be larger than Matlab
% can handle owing to memory limitations.
% Usa... |
github | lcnhappe/happe-master | loadcnt.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/loadcnt.m | 24,511 | utf_8 | 4c5259259e1f529ae64cfe52eec5bd9a | % loadcnt() - Load a Neuroscan continuous signal file.
%
% Usage:
% >> cnt = loadcnt(file, varargin)
%
% Inputs:
% filename - name of the file with extension
%
% Optional inputs:
% 't1' - start at time t1, default 0. Warning, events latency
% might be innacurate (this is an open issue).
% ... |
github | lcnhappe/happe-master | runica.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/runica.m | 64,715 | utf_8 | 6d997fa33b536afd5abe7d1cac2c0c8d | % runica() - Perform Independent Component Analysis (ICA) decomposition
% of input data using the logistic infomax ICA algorithm of
% Bell & Sejnowski (1995) with the natural gradient feature
% of Amari, Cichocki & Yang, or optionally the extended-ICA
% algorithm of Lee, G... |
github | lcnhappe/happe-master | jader.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/eeglab/jader.m | 11,455 | utf_8 | 8b74fa9e0345ee0857e1e564b74dd872 | % jader() - blind separation of real signals using JADE (v1.5, Dec. 1997).
%
% Usage:
% >> B = jader(X);
% >> B = jader(X,m);
%
% Notes:
% 1) If X is an nxT data matrix (n sensors, T samples) then
% B=jader(X) is a nxn separating matrix such that S=B*X is an nxT
% matrix of estimated source signals.
% 2)... |
github | lcnhappe/happe-master | spm_write_sn.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_write_sn.m | 16,446 | utf_8 | c5ee1fa9a0d128de2d7e3d4522ea5ad1 | function VO = spm_write_sn(V,prm,flags,extras)
% Write Out Warped Images.
% FORMAT VO = spm_write_sn(V,prm,flags,msk)
% V - Images to transform (filenames or volume structure).
% matname - Transformation information (filename or structure).
% flags - flags structure, with fields...
% interp - ... |
github | lcnhappe/happe-master | spm_affreg.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_affreg.m | 18,476 | utf_8 | 46e5122f9bf661904177ad3e3beb09c1 | function [M,scal] = spm_affreg(VG,VF,flags,M,scal)
% Affine registration using least squares.
% FORMAT [M,scal] = spm_affreg(VG,VF,flags,M0,scal0)
%
% VG - Vector of template volumes.
% VF - Source volume.
% flags - a structure containing various options. The fields are:
% WG - Weig... |
github | lcnhappe/happe-master | spm_vol.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_vol.m | 3,510 | utf_8 | fe778e6a833de2a9f5466018c571d5a6 | function V = spm_vol(P)
% Get header information etc for images.
% FORMAT V = spm_vol(P)
% P - a matrix of filenames.
% V - a vector of structures containing image volume information.
% The elements of the structures are:
% V.fname - the filename of the image.
% V.dim - the x, y and z dimensions of the vo... |
github | lcnhappe/happe-master | spm_read_netcdf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_read_netcdf.m | 3,640 | utf_8 | 9339212a576f5d67662107cebb087054 | function cdf = spm_read_netcdf(fname)
% Read the header information from a NetCDF file into a data structure.
% FORMAT cdf = spm_read_netcdf(fname)
% fname - name of NetCDF file
% cdf - data structure
%
% See: http://www.unidata.ucar.edu/packages/netcdf/
% _____________________________________________________________... |
github | lcnhappe/happe-master | spm_figure.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_figure.m | 30,750 | utf_8 | 93a783638e6b9249e4ea8bb6377a5308 | function varargout=spm_figure(varargin)
% Setup and callback functions for Graphics window
% FORMAT varargout=spm_figure(varargin)
% - An embedded callback, multi-function function
% - For detailed programmers comments, see format specifications
% in main body of code
%______________________________... |
github | lcnhappe/happe-master | spm_smoothto8bit.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_smoothto8bit.m | 2,262 | utf_8 | b2475a56514dcda30f94612977b6f68a | function VO = spm_smoothto8bit(V,fwhm)
% 3 dimensional convolution of an image to 8bit data in memory
% FORMAT VO = spm_smoothto8bit(V,fwhm)
% V - mapped image to be smoothed
% fwhm - FWHM of Guassian filter width in mm
% VO - smoothed volume in a form that can be used by the
% spm_*_vol.mex* functions.... |
github | lcnhappe/happe-master | spm_platform.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_platform.m | 7,715 | utf_8 | c43c4cc00de257f7ef7f8f9e79552a22 | function varargout=spm_platform(varargin)
% Platform specific configuration parameters for SPM
%
% FORMAT ans = spm_platform(arg)
% arg - optional string argument, can be
% - 'bigend' - return whether this architecture is bigendian
% - Inf - is not IEEE floating point
% ... |
github | lcnhappe/happe-master | spm_read_hdr.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_read_hdr.m | 5,294 | utf_8 | 674302bc6310dd07e5c76a9cc58fc5ce | function [hdr,otherendian] = spm_read_hdr(fname)
% Read (SPM customised) Analyze header
% FORMAT [hdr,otherendian] = spm_read_hdr(fname)
% fname - .hdr filename
% hdr - structure containing Analyze header
% otherendian - byte swapping necessary flag
%_______________________________________________________... |
github | lcnhappe/happe-master | spm_write_plane.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_write_plane.m | 4,446 | utf_8 | 4112c03c69d90f524531bf05dc467067 | function V = spm_write_plane(V,A,p)
% Write a transverse plane of image data.
% FORMAT V = spm_write_plane(V,A,p)
% V - data structure containing image information.
% - see spm_vol for a description.
% A - the two dimensional image to write.
% p - the plane number (beginning from 1).
%
% VO - (possibly) mo... |
github | lcnhappe/happe-master | spm_normalise.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_normalise.m | 12,887 | utf_8 | e8649290b7272eb0337aeae86fb737c0 | function params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% Spatial (stereotactic) normalization
%
% FORMAT params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% VG - template handle(s)
% VF - handle of image to estimate params from
% matname - name of file to store deformation definitions
% VWG ... |
github | lcnhappe/happe-master | spm_create_vol.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_create_vol.m | 11,434 | utf_8 | f18edbf50d6186af1c5108b814690894 | function V = spm_create_vol(V,varargin)
% Create an image file.
% FORMAT Vo = spm_create_vol(Vi,['noopen'])
% Vi - data structure containing image information.
% - see spm_vol for a description.
% 'noopen' - optional flag to say "don't open/create the image file".
% Vo - data structure after modification for w... |
github | lcnhappe/happe-master | spm_segment.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_segment.m | 23,496 | utf_8 | 9a46c30048feeec44530aa433c773546 | function VO = spm_segment(VF,PG,flags)
% Segment an MR image into Gray, White & CSF.
%
% FORMAT VO = spm_segment(PF,PG,flags)
% PF - name(s) of image(s) to segment (must have same dimensions).
% PG - name(s) of template image(s) for realignment.
% - or a 4x4 transformation matrix which maps from the image t... |
github | lcnhappe/happe-master | spm_vol_ecat7.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm2/spm_vol_ecat7.m | 16,814 | utf_8 | 7c015c4444d187b46b81134cf388711c | function V = spm_vol_ecat7(fname,required)
% Get header information etc. for ECAT 7 images.
% FORMAT V = spm_vol_ecat7(fname,required)
% P - an ECAT 7 filename.
% fname - a structure containing image volume information.
% required - an optional text argument specifying which volumes to
% u... |
github | lcnhappe/happe-master | read_wobj.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/wavefront/read_wobj.m | 14,065 | utf_8 | 9ba67412c5fae158393557fd39a68306 | function OBJ=read_wobj(fullfilename)
% Read the objects from a Wavefront OBJ file
%
% OBJ=read_wobj(filename);
%
% OBJ struct containing:
%
% OBJ.vertices : Vertices coordinates
% OBJ.vertices_texture: Texture coordinates
% OBJ.vertices_normal : Normal vectors
% OBJ.vertices_point : Vertice data used for points and li... |
github | lcnhappe/happe-master | write_wobj.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/wavefront/write_wobj.m | 7,933 | utf_8 | 96f334af246b0a305d8e8d354ddc7bba | function write_wobj(OBJ,fullfilename)
% Write objects to a Wavefront OBJ file
%
% write_wobj(OBJ,filename);
%
% OBJ struct containing:
%
% OBJ.vertices : Vertices coordinates
% OBJ.vertices_texture: Texture coordinates
% OBJ.vertices_normal : Normal vectors
% OBJ.vertices_point : Vertice data used for points and line... |
github | lcnhappe/happe-master | mne_load_coil_def.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/mne/mne_load_coil_def.m | 8,714 | utf_8 | 27f6f7c6a6d28610885a9c1be788e73a | function [CoilDef,Header] = mne_load_coil_def(fname);
%
%
% [CoilDef,Header] = mne_load_coil_def(fname);
% CoilDef = mne_load_coil_def(fname);
%
% If file name is not specified, the standard coil definition file
% $MNE_ROOT/setup/mne/coil_def.dat or $MNE_ROOT/share/mne/coil_def.dat is read
%
% The co... |
github | lcnhappe/happe-master | fiff_find_evoked.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/mne/fiff_find_evoked.m | 2,846 | utf_8 | f7c5e4fd4395754f0e87d3fe6e984d62 | function [data_sets] = fiff_find_evoked(fname)
%
% [data_sets] = fiff_find_evoked(fname)
%
% Find all evoked data sets in a fif file and create a list of descriptors
%
%
% Author : Matti Hamalainen, MGH Martinos Center
% License : BSD 3-clause
%
global FIFF;
if isempty(FIFF)
FIFF = fiff_define_constants();
e... |
github | lcnhappe/happe-master | load_dicom_series.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/freesurfer/load_dicom_series.m | 3,258 | utf_8 | b4de6c347c9d4453d512c9f0b5cfa58a | function [vol, M, tmpdcminfo, mr_parms] = load_dicom_series(seriesno,dcmdir,dcmfile)
% [vol, M, dcminfo] = load_dicom_series(seriesno,<dcmdir>,<dcmfile>)
%
% Reads in a dicom series given:
% 1. The series number and directory, or
% 2. A dicom file from the desired series
%
% If the series number is given but no dcmdi... |
github | lcnhappe/happe-master | load_dicom_fl.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/freesurfer/load_dicom_fl.m | 5,504 | utf_8 | a1b99a4d200049ebdb809c0b684b98a1 | function [vol, M, dcminfo, mr_parms] = load_dicom_fl(flist)
% [vol, M, dcminfo, mr_parms] = load_dicom_fl(flist)
%
% Loads a volume from the dicom files in flist.
%
% The volume dimensions are arranged such that the
% readout dimension is first, followed by the phase-encode,
% followed by the slices (this is not implem... |
github | lcnhappe/happe-master | tukeywin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/tukeywin.m | 2,102 | utf_8 | 92cee22ee44a0bf1650a07edd3ef943a | % Copyright (C) 2007 Laurent Mazet <mazet@crm.mot.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%
% This progra... |
github | lcnhappe/happe-master | rectwin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/rectwin.m | 990 | utf_8 | 6fcae9032382b3785fa1a5fc7d35d0bd | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | triang.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/triang.m | 2,254 | utf_8 | 922302c6c872d9c51d61c97a76761328 | % Copyright (C) 2000-2002 Paul Kienzle <pkienzle@users.sf.net>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%
% Thi... |
github | lcnhappe/happe-master | bohmanwin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/bohmanwin.m | 1,381 | utf_8 | b837d6f243c8cd46b91ac9846a12da56 | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | hanning.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/hanning.m | 1,970 | utf_8 | 78215b654e6e105faa447902fa6cc81c | function [tap] = hanning(n, str)
%HANNING Hanning window.
% HANNING(N) returns the N-point symmetric Hanning window in a column
% vector. Note that the first and last zero-weighted window samples
% are not included.
%
% HANNING(N,'symmetric') returns the same result as HANNING(N).
%
% HANNING(N,'periodic'... |
github | lcnhappe/happe-master | filtfilt.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/filtfilt.m | 3,297 | iso_8859_1 | d01a26a827bc3379f05bbc57f46ac0a9 | % Copyright (C) 1999 Paul Kienzle
% Copyright (C) 2007 Francesco Potortì
% Copyright (C) 2008 Luca Citi
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (a... |
github | lcnhappe/happe-master | nuttallwin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/nuttallwin.m | 1,316 | utf_8 | 2a8b412e307f23d07700757c675abcc1 | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | hann.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/hann.m | 66 | utf_8 | 779d38839745c5c57530f4c470cc1352 | % w = hann(n)
% see hanning
function w = hann(n), w=hanning(n);
|
github | lcnhappe/happe-master | kaiser.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/kaiser.m | 1,745 | utf_8 | bae51aff1f9eb7c65b82a58fb3049d34 | % Copyright (C) 1995, 1996, 1997 Kurt Hornik <Kurt.Hornik@ci.tuwien.ac.at>
% Copyright (C) 2000 Paul Kienzle <pkienzle@users.sf.net>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either vers... |
github | lcnhappe/happe-master | window.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/window.m | 1,240 | utf_8 | a1ed726ea9ff030e26b60e47cd280d12 | % Copyright (C) 2008 David Bateman
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%
% This program is distributed in... |
github | lcnhappe/happe-master | blackmanharris.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/blackmanharris.m | 1,188 | utf_8 | 58ad36fc97b524266d6a9db98fb6e6ee | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | butter.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/butter.m | 3,578 | utf_8 | 696de0a27da88cbdd29b04aed067dbce | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | lcnhappe/happe-master | parzenwin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/parzenwin.m | 1,301 | utf_8 | 5e0e2262856d9c53bb520b02b54f2653 | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | gausswin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/gausswin.m | 1,116 | utf_8 | 17daab2749d4ce5c84bb5e676271e8f0 | % Copyright (C) 1999 Paul Kienzle <pkienzle@users.sf.net>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%
% This pro... |
github | lcnhappe/happe-master | barthannwin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/barthannwin.m | 1,173 | utf_8 | c90d57c40549a232f05664d193b8cb7a | % Copyright (C) 2007 Sylvain Pelissier <sylvain.pelissier@gmail.com>
%
% This program is free software; you can redistribute it and/or modify it under
% the terms of the GNU General Public License as published by the Free Software
% Foundation; either version 3 of the License, or (at your option) any later
% version.
%... |
github | lcnhappe/happe-master | postpad.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/private/postpad.m | 2,013 | utf_8 | 2c9539d77ff0f85c9f89108f4dc811e0 | % Copyright (C) 1994, 1995, 1996, 1997, 1998, 2000, 2002, 2004, 2005,
% 2006, 2007, 2008, 2009 John W. Eaton
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Founda... |
github | lcnhappe/happe-master | sftrans.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/private/sftrans.m | 7,947 | utf_8 | f64cb2e7d19bcdc6232b39d8a6d70e7c | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | lcnhappe/happe-master | bilinear.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/signal/private/bilinear.m | 4,339 | utf_8 | 17250db27826cad87fa3384823e1242f | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | lcnhappe/happe-master | fns_region_write.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fns/fns_region_write.m | 1,267 | utf_8 | 45ac73e5dd89386923a808a25a65dc99 | %% TODO: Need to remove this routine.
function fns_region_write(rgnfile,rgn)
%
% This routine write the region information to the HDF5 file
%
% rgnfile The output region file.
% rgn The region of interest data structure.
% @author Hung Dang, July 13, 2010
% Write the description of stored data to the output file
hdf... |
github | lcnhappe/happe-master | fns_contable_write.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fns/fns_contable_write.m | 2,490 | utf_8 | 3a266284afc0ca72cdb64b914acdf643 | function cond = fns_contable_write(varargin)
% Creates the default conductivity table
%
% Use as
% cond = fns_contable_write
%
% The FNS convention for tissue types is the following:
% 0 "Clear Label"
% 1 "CSF"
% 2 "Gray Matter"
% 3 "White Matter"
% 4 "Fat"
% 5 "Muscle"... |
github | lcnhappe/happe-master | denoise_energy.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/denoise_energy.m | 2,548 | utf_8 | 276746592d3b53d810d56acb6c3c952f | function [params, s_new] = denoise_energy(params, s, state)
% Energy based DSS denoising function
% [params, s_new] = denoise_energy(params, s, state)
% params Function specific modifiable parameters
% params.usepow ... (default: 1.3)
% params.c ... (default: ?)
% params.var_noise Initi... |
github | lcnhappe/happe-master | denoise_filter.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/denoise_filter.m | 2,143 | utf_8 | ae3a9902113a9f9a705cf8295dce183c | function [params, s_new] = denoise_filter(params, s, state)
% Generic filter function. Can be used as DSS denoising function.
% [params, s_new] = denoise_filter(params, s, state)
% params Defines the used filter
% params.filter_conv Inpulse response for convolution filter
% params.filter_dct Mask ... |
github | lcnhappe/happe-master | report_convergence.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/report_convergence.m | 1,476 | utf_8 | e97824a6b7f960c982c55b90b63cc8cf | function [report_data] = report_convergence(report_data, state)
% Report convergence of the algorithm
% Copyright (C) 2004, 2005 DSS MATLAB package team (dss@cis.hut.fi).
% Distributed by Laboratory of Computer and Information Science,
% Helsinki University of Technology. http://www.cis.hut.fi/projects/dss/.
% $Id$
i... |
github | lcnhappe/happe-master | denss.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/denss.m | 3,216 | utf_8 | 6682365eb0d33779435c21332112ad78 | function [state, B, A] = denss(X_or_state, parameters)
% Main DSS algorithm
% [state, B, A] = denss(X or state)
% [state, B, A] = denss(X or state, [params])
% [state, B, A] = denss(X or state, {param1, 'value1', param2, 'value2', ...})
% X Mixed signals
% state Existing or new algorithm s... |
github | lcnhappe/happe-master | default_stop.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/default_stop.m | 1,441 | utf_8 | 219744b4c15669056f70c9575f12440a | function [stop, params] = default_stop(params, state)
% Default stopping criteria function.
% [stop, params] = default_stop(params, state)
% params Function specific modifiable parameters
% params.maxiters Maximum number of allowed iterations
% params.epsilon Treshold angle, iteration is stopped when... |
github | lcnhappe/happe-master | estimate_mask.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dss/estimate_mask.m | 1,695 | utf_8 | 2147549d4388aa7913a35d434f4aa692 | function [mask] = estimate_mask(s, filter_params, iterations)
% Creates binary mask based on SNR estimate of the signal
% [mask] = estimate_mask(s, filter_params, iterations)
% s Source signal
% filter_params Filter parameters for smoothing variance estimate
% iterations Number of iterat... |
github | lcnhappe/happe-master | pcamat.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fastica/pcamat.m | 12,028 | utf_8 | b597f6c30d7c0ad437ab6a408e0cc1fb | function [E, D] = pcamat(vectors, firstEig, lastEig, s_interactive, ...
s_verbose);
%PCAMAT - Calculates the pca for data
%
% [E, D] = pcamat(vectors, firstEig, lastEig, ...
% interactive, verbose);
%
% Calculates the PCA matrices for given data (row) vectors. Returns
% the eigenvector (E) and diag... |
github | lcnhappe/happe-master | icaplot.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fastica/icaplot.m | 13,211 | utf_8 | 066670e2905b35f198920d743c74faf5 | function icaplot(mode, varargin);
%ICAPLOT - plot signals in various ways
%
% ICAPLOT is mainly for plottinf and comparing the mixed signals and
% separated ica-signals.
%
% ICAPLOT has many different modes. The first parameter of the function
% defines the mode. Other parameters and their order depends on the
% mode. ... |
github | lcnhappe/happe-master | cond_indep_fisher_z.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMstats/cond_indep_fisher_z.m | 3,635 | utf_8 | 74e2c5c915700e2f7a672113e333f813 | function [CI, r, p] = cond_indep_fisher_z(X, Y, S, C, N, alpha)
% COND_INDEP_FISHER_Z Test if X indep Y given Z using Fisher's Z test
% CI = cond_indep_fisher_z(X, Y, S, C, N, alpha)
%
% C is the covariance (or correlation) matrix
% N is the sample size
% alpha is the significance level (default: 0.05)
%
% See p133 of ... |
github | lcnhappe/happe-master | logistK.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMstats/logistK.m | 7,253 | utf_8 | 9539c8105ebca14d632373f5f9f4b70d | function [beta,post,lli] = logistK(x,y,w,beta)
% [beta,post,lli] = logistK(x,y,beta,w)
%
% k-class logistic regression with optional sample weights
%
% k = number of classes
% n = number of samples
% d = dimensionality of samples
%
% INPUT
% x dxn matrix of n input column vectors
% y kxn vector of class assignment... |
github | lcnhappe/happe-master | dhmm_em.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/hmm/dhmm_em.m | 3,862 | utf_8 | 83f088af19f326cf34ba80629cff4d01 | function [LL, prior, transmat, obsmat] = dhmm_em(data, prior, transmat, obsmat, varargin)
% LEARN_DHMM Find the ML/MAP parameters of an HMM with discrete outputs using EM.
% [ll_trace, prior, transmat, obsmat] = learn_dhmm(data, prior0, transmat0, obsmat0, ...)
%
% Notation: Q(t) = hidden state, Y(t) = observation
%
%... |
github | lcnhappe/happe-master | mhmm_em.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/hmm/mhmm_em.m | 5,562 | utf_8 | 5a337291416185ebcf567e46e08a3d09 | function [LL, prior, transmat, mu, Sigma, mixmat] = ...
mhmm_em(data, prior, transmat, mu, Sigma, mixmat, varargin);
% LEARN_MHMM Compute the ML parameters of an HMM with (mixtures of) Gaussians output using EM.
% [ll_trace, prior, transmat, mu, sigma, mixmat] = learn_mhmm(data, ...
% prior0, transmat0, mu0, sig... |
github | lcnhappe/happe-master | subv2ind.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/subv2ind.m | 1,574 | utf_8 | e85d0bab88fc0d35b803436fa1dc0e15 | function ndx = subv2ind(siz, subv)
% SUBV2IND Like the built-in sub2ind, but the subscripts are given as row vectors.
% ind = subv2ind(siz,subv)
%
% siz can be a row or column vector of size d.
% subv should be a collection of N row vectors of size d.
% ind will be of size N * 1.
%
% Example:
% subv = [1 1 1;
% ... |
github | lcnhappe/happe-master | zipload.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/zipload.m | 1,611 | utf_8 | 67412c21b14bebb640784443e9e3bbd8 | %ZIPLOAD Load compressed data file created with ZIPSAVE
%
% [data] = zipload( filename )
% filename: string variable that contains the name of the
% compressed file (do not include '.zip' extension)
% Use only with files created with 'zipsave'
% pkzip25.exe has to be in the matlab path. This file is a compression ut... |
github | lcnhappe/happe-master | plot_ellipse.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/plot_ellipse.m | 507 | utf_8 | 3a27bbd5c1bdfe99983171e96789da6d | % PLOT_ELLIPSE
% h=plot_ellipse(x,y,theta,a,b)
%
% This routine plots an ellipse with centre (x,y), axis lengths a,b
% with major axis at an angle of theta radians from the horizontal.
%
% Author: P. Fieguth
% Jan. 98
%
%http://ocho.uwaterloo.ca/~pfieguth/Teaching/372/plot_ellipse.m
function h=plot_ellipse(x,... |
github | lcnhappe/happe-master | conf2mahal.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/conf2mahal.m | 2,424 | utf_8 | 682226ca8c1183325f4204e0c22de0a7 | % CONF2MAHAL - Translates a confidence interval to a Mahalanobis
% distance. Consider a multivariate Gaussian
% distribution of the form
%
% p(x) = 1/sqrt((2 * pi)^d * det(C)) * exp((-1/2) * MD(x, m, inv(C)))
%
% where MD(x, m, P) is the Mahalanobis distance from x
% ... |
github | lcnhappe/happe-master | plotgauss2d.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/plotgauss2d.m | 970 | utf_8 | 768501b0264c4510e2724b15b5be4e97 | function h=plotgauss2d(mu, Sigma, plot_cross)
% PLOTGAUSS2D Plot a 2D Gaussian as an ellipse with optional cross hairs
% h=plotgauss2(mu, Sigma)
%
% h=plotgauss2(mu, Sigma, 1) also plots the major and minor axes
%
% Example
% clf; S=[2 1; 1 2]; plotgauss2d([0;0], S, 1); axis equal
h = plotcov2(mu, Sigma);
return;
%%... |
github | lcnhappe/happe-master | zipsave.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/zipsave.m | 1,480 | utf_8 | cc543374345b9e369d147c452008bc36 | %ZIPSAVE Save data in compressed format
%
% zipsave( filename, data )
% filename: string variable that contains the name of the resulting
% compressed file (do not include '.zip' extension)
% pkzip25.exe has to be in the matlab path. This file is a compression utility
% made by Pkware, Inc. It can be dowloaded from... |
github | lcnhappe/happe-master | matprint.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/matprint.m | 1,020 | utf_8 | e92a96dad0e0b9f25d2fe56280ba6393 | % MATPRINT - prints a matrix with specified format string
%
% Usage: matprint(a, fmt, fid)
%
% a - Matrix to be printed.
% fmt - C style format string to use for each value.
% fid - Optional file id.
%
% Eg. matprint(a,'%3.1f') will print each entry to 1 decimal place
... |
github | lcnhappe/happe-master | plotcov3.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/plotcov3.m | 4,040 | utf_8 | 1f186acd56002148a3da006a9fc8b6a2 | % PLOTCOV3 - Plots a covariance ellipsoid with axes for a trivariate
% Gaussian distribution.
%
% Usage:
% [h, s] = plotcov3(mu, Sigma[, OPTIONS]);
%
% Inputs:
% mu - a 3 x 1 vector giving the mean of the distribution.
% Sigma - a 3 x 3 symmetric positive semi-definite matrix giving
% the... |
github | lcnhappe/happe-master | exportfig.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/exportfig.m | 30,663 | utf_8 | 838a8ee93ca6a9b6a85a90fa68976617 | function varargout = exportfig(varargin)
%EXPORTFIG Export a figure.
% EXPORTFIG(H, FILENAME) writes the figure H to FILENAME. H is
% a figure handle and FILENAME is a string that specifies the
% name of the output file.
%
% EXPORTFIG(H, FILENAME, OPTIONS) writes the figure H to FILENAME
% with options init... |
github | lcnhappe/happe-master | plotcov2.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/plotcov2.m | 3,013 | utf_8 | 4305f11ba0280ef8ebcad4c8a4c4013c | % PLOTCOV2 - Plots a covariance ellipse with major and minor axes
% for a bivariate Gaussian distribution.
%
% Usage:
% h = plotcov2(mu, Sigma[, OPTIONS]);
%
% Inputs:
% mu - a 2 x 1 vector giving the mean of the distribution.
% Sigma - a 2 x 2 symmetric positive semi-definite matrix giving
% ... |
github | lcnhappe/happe-master | ind2subv.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/ind2subv.m | 1,206 | utf_8 | 5c2e8689803ece8fca091e60c913809d | function sub = ind2subv(siz, ndx)
% IND2SUBV Like the built-in ind2sub, but returns the answer as a row vector.
% sub = ind2subv(siz, ndx)
%
% siz and ndx can be row or column vectors.
% sub will be of size length(ndx) * length(siz).
%
% Example
% ind2subv([2 2 2], 1:8) returns
% [1 1 1
% 2 1 1
% ...
% 2 2 2]
% ... |
github | lcnhappe/happe-master | process_options.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/process_options.m | 4,385 | utf_8 | bb0450331cd2e6af72679b642ca38e24 | % PROCESS_OPTIONS - Processes options passed to a Matlab function.
% This function provides a simple means of
% parsing attribute-value options. Each option is
% named by a unique string and is given a default
% value.
%
% Usage: [var1, var2, ...... |
github | lcnhappe/happe-master | nonmaxsup.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/murphy/KPMtools/nonmaxsup.m | 1,708 | utf_8 | ad451680a9d414f907da2969e0809c22 | % NONMAXSUP - Non-maximal Suppression
%
% Usage: cim = nonmaxsup(im, radius)
%
% Arguments:
% im - image to be processed.
% radius - radius of region considered in non-maximal
% suppression (optional). Typical values to use might
% be 1-3. Default i... |
github | lcnhappe/happe-master | laplacedegenerate_ep.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/bayesianlogreg/laplacedegenerate_ep.m | 18,982 | utf_8 | f7c41d02425138606269031927275e33 | function [Gauss,terms,logp,comptime] = laplacedegenerate_ep(y,X,K,varargin)
% specialized version of our fast variant of
% Expectation Propagation for Logistic Regression (2 classes) with a (correlated) Laplace prior
% in the degenerate case, i.e., when the number of features >> number of samples
% (also works when n... |
github | lcnhappe/happe-master | bayesianlinreg_ep.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/bayesianlogreg/bayesianlinreg_ep.m | 17,556 | utf_8 | 64edf12e5451aa53b2d6ab3ff064778f | function [Gauss,terms,logp,comptime] = bayesianlinreg_ep(labels,examples,K,varargin)
% Bayesian linear regression with a multivariate Laplace prior using a fast
% variant of EP.
%HERE
% input:
% labels = an N x 1 vector of class labels [1,2]
% examples = an N x M matrix of input data
% K = the prior precis... |
github | lcnhappe/happe-master | LinRegLaplaceEP.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/bayesianlogreg/LinRegLaplaceEP.m | 16,909 | utf_8 | 1182837ca7d49d2ab0cd9588f826fffb | function [Gauss,terms,logp,EP_ERR,logphist] = LinRegLaplaceEP(y,X,K,sig2,varargin)
% specialized version of our fast variant of
% Expectation Propagation for Logistic Regression (2 classes) with a (correlated) Laplace prior
% in the degenerate case, i.e., when the number of features >> number of samples
% (also works ... |
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