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|---|---|---|---|---|---|---|---|---|
github | lcnhappe/happe-master | lik_probit.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_probit.m | 11,048 | UNKNOWN | 5ab0288a472ad19a923d50739c297a64 | function lik = lik_probit(varargin)
%LIK_PROBIT Create a Probit likelihood structure
%
% Description
% LIK = LIK_PROBIT creates Probit likelihood for classification
% problem with class labels {-1,1}.
%
% The likelihood is defined as follows:
% __ n
% p(y|f, z) = || i=1 normcdf(y_i *... |
github | lcnhappe/happe-master | lik_negbin.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_negbin.m | 25,046 | utf_8 | a4815ddb29de3291580a7b2ecc130906 | function lik = lik_negbin(varargin)
%LIK_NEGBIN Create a Negative-binomial likelihood structure
%
% Description
% LIK = LIK_NEGBIN('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates Negative-binomial likelihood structure in which the
% named parameters have the specified values. Any unspecified
% parameters ... |
github | lcnhappe/happe-master | gpcf_cat.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_cat.m | 11,705 | UNKNOWN | 78197ff0860b39f108847aa8abae1847 | function gpcf = gpcf_cat(varargin)
%GPCF_CAT Create a categorical covariance function
%
% Description
% GPCF = GPCF_CAT('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates a categorical covariance function structure in
% which the named parameters have the specified values. Any
% unspecified parameters are set... |
github | lcnhappe/happe-master | gp_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gp_install.m | 14,808 | utf_8 | f3429c304b3ddc097046417323d93093 | function gp_install(suiteSparse)
% Matlab function to compile all the c-files to mex in the GPstuff/gp
% folder. The function is called from GPstuff/matlab_install.m but
% can be run separately also.
%
% If you want to use GPstuff without compactly supported (CS)
% covariance functions run as gp_install([]). If y... |
github | lcnhappe/happe-master | lik_poisson.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_poisson.m | 17,766 | utf_8 | 9883c930a03527bfc0126d7e930f2a82 | function lik = lik_poisson(varargin)
%LIK_POISSON Create a Poisson likelihood structure
%
% Description
% LIK = LIK_POISSON creates Poisson likelihood structure
%
% The likelihood is defined as follows:
% __ n
% p(y|f, z) = || i=1 Poisson(y_i|z_i*exp(f_i))
%
% where z is a vector of... |
github | lcnhappe/happe-master | gpcf_mask.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_mask.m | 11,666 | UNKNOWN | aac6a91c7e0fd4518d918b34507b986c | function gpcf = gpcf_mask(varargin)
%GPCF_MASK Create a mask covariance function
%
% Description
% GPCF = GPCF_MASK('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates a mask covariance function structure in
% which the named parameters have the specified values. Any
% unspecified parameters are set to default... |
github | lcnhappe/happe-master | gp_e.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gp_e.m | 19,648 | utf_8 | 3ec15c96030544b6ae806bdd136d7b29 | function [e, edata, eprior] = gp_e(w, gp, x, y, varargin)
%GP_E Evaluate the energy function (un-normalized negative
% log marginal posterior)
%
% Description
% E = GP_E(W, GP, X, Y, OPTIONS) takes a Gaussian process
% structure GP together with a matrix X of input vectors and a
% matrix Y of targets, ... |
github | lcnhappe/happe-master | lik_multinom.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_multinom.m | 10,705 | UNKNOWN | e987daaabebb5e9ffcb11120d36bb4f4 | function lik = lik_multinom(varargin)
%LIK_MULTINOM Create a multinom likelihood structure
%
% Description
% LIK = LIK_MULTINOM creates multinom likelihood for multi-class
% count data. The observed numbers in each class with C classes is given
% as 1xC vector.
%
% The likelihood is defined as follows:... |
github | lcnhappe/happe-master | lik_binomial.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_binomial.m | 18,897 | UNKNOWN | a57c5a78ab9b3f5404f6da03ff6f88c6 | function lik = lik_binomial(varargin)
%LIK_BINOMIAL Create a Binomial likelihood structure
%
% Description
% LIK = LIK_BINOMIAL creates Binomial likelihood structure.
%
% The likelihood is defined as follows:
% __ n
% p(y|f, z) = || i=1 [ p_i^(y_i)*(1-p_i)^(z_i-y_i)) *
% ... |
github | lcnhappe/happe-master | lik_loglogistic.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_loglogistic.m | 23,851 | utf_8 | 488337e3c0403b611d2cf1246ceb8658 | function lik = lik_loglogistic(varargin)
%LIK_LOGLOGISTIC Create a right censored log-logistic likelihood structure
%
% Description
% LIK = LIK_LOGLOGISTIC('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates a likelihood structure for right censored log-logistic
% survival model in which the named parameters have... |
github | lcnhappe/happe-master | gpcf_sexp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_sexp.m | 39,532 | utf_8 | 0ef6e85965ae3b707bb5d1d78df49bd4 | function gpcf = gpcf_sexp(varargin)
%GPCF_SEXP Create a squared exponential covariance function
%
% Description
% GPCF = GPCF_SEXP('PARAM1',VALUE1,'PARAM2,VALUE2,...) creates
% squared exponential covariance function structure in which the
% named parameters have the specified values. Any unspecified
% pa... |
github | lcnhappe/happe-master | gpcf_prod.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_prod.m | 15,801 | utf_8 | bdd8dde16beff8dd6249f6ff7f82aeaa | function gpcf = gpcf_prod(varargin)
%GPCF_PROD Create a product form covariance function
%
% Description
% GPCF = GPCF_PROD('cf', {GPCF_1, GPCF_2, ...})
% creates a product form covariance function
% GPCF = GPCF_1 .* GPCF_2 .* ... .* GPCF_N
%
% See also
% GP_SET, GPCF_*
% Copyright (c) 2009-201... |
github | lcnhappe/happe-master | scaled_mh.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/scaled_mh.m | 10,266 | utf_8 | 1563f9eb51b7be715e98686a4c44a6fd | function [f, energ, diagn] = scaled_mh(f, opt, gp, x, y, z)
%SCALED_MH A scaled Metropolis-Hastings sampling for latent values
%
% Description
% [F, ENERG, DIAG] = SCALED_MH(F, OPT, GP, X, Y) takes the
% current latent values F, options structure OPT, Gaussian
% process structure GP, inputs X and outputs Y. ... |
github | lcnhappe/happe-master | lik_lgp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/lik_lgp.m | 15,167 | windows_1250 | 7b7a6270ae79e34121ec3ef3091f6b59 | function lik = lik_lgp(varargin)
%LIK_LGP Create a logistic Gaussian process likelihood structure
%
% Description
% LIK = LIK_LGP creates a logistic Gaussian process likelihood structure
%
% The likelihood is defined as follows:
% __ n
% p(y|f) = || i=1 exp(f_i) / Sum_{j=1}^n exp(f_j),
%
% ... |
github | lcnhappe/happe-master | gpmf_squared.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpmf_squared.m | 8,746 | utf_8 | fcd6e5e58eb18041d7c0f1fb70a152c0 | function gpmf = gpmf_squared(varargin)
%GPMF_SQUARED Create a squared mean function
%
% Description
% GPMF = GPMF_SQUARED('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates linear mean function structure in which the named
% parameters have the specified values. Any unspecified
% parameters are set to defaul... |
github | lcnhappe/happe-master | gpmf_linear.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpmf_linear.m | 7,746 | utf_8 | 093d9284e00323d01f6ed94a25f6947a | function gpmf = gpmf_linear(varargin)
%GPMF_LINEAR Create a linear mean function
%
% Description
% GPMF = GPMF_LINEAR('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates linear mean function structure in which the named
% parameters have the specified values. Any unspecified
% parameters are set to default val... |
github | lcnhappe/happe-master | gpcf_matern52.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_matern52.m | 28,809 | utf_8 | 1086d8b7cac3a06976c064521dc35ad8 | function gpcf = gpcf_matern52(varargin)
%GPCF_MATERN52 Create a Matern nu=5/2 covariance function
%
% Description
% GPCF = GPCF_MATERN52('PARAM1',VALUE1,'PARAM2,VALUE2,...)
% creates Matern nu=5/2 covariance function structure in which
% the named parameters have the specified values. Any
% unspecified p... |
github | lcnhappe/happe-master | gpcf_exp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/gp/gpcf_exp.m | 27,016 | utf_8 | e1b8f5e6efd82d342321a33398df19b1 | function gpcf = gpcf_exp(varargin)
%GPCF_EXP Create an exponential covariance function
%
% Description
% GPCF = GPCF_EXP('PARAM1',VALUE1,'PARAM2,VALUE2,...) creates a
% exponential covariance function structure in which the named
% parameters have the specified values. Any unspecified
% parameters are set... |
github | lcnhappe/happe-master | SuiteSparse_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/SuiteSparse_install.m | 11,112 | utf_8 | fb32defab8ad43d072b65d41d20fb41f | function paths = SuiteSparse_install (do_demo)
%SuiteSparse_install: compiles and installs all of SuiteSparse
% A Suite of Sparse matrix packages, authored or co-authored by Tim Davis, Univ.
% Florida. You must be in the same directory as SuiteSparse_install to use this.
%
% Packages in SuiteSparse:
%
% UMFPACK ... |
github | lcnhappe/happe-master | colamd_test.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/COLAMD/MATLAB/colamd_test.m | 11,715 | utf_8 | 67855282bea237b3f5e5aaead650f90e | function colamd_test
%COLAMD_TEST test colamd2 and symamd2
% Example:
% colamd_test
%
% COLAMD and SYMAMD testing function. Here we try to give colamd2 and symamd2
% every possible type of matrix and erroneous input that they may encounter.
% We want either a valid permutation returned or we want them to fail
% gra... |
github | lcnhappe/happe-master | ccolamd_test.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CCOLAMD/MATLAB/ccolamd_test.m | 11,803 | utf_8 | 2cf7c488966fe7d5987b4062e6f6a1ca | function ccolamd_test
%CCOLAMD_TEST extensive test of ccolamd and csymamd
%
% Example:
% ccolamd_test
%
% See also csymamd, ccolamd, ccolamd_make.
% Copyright 1998-2007, Timothy A. Davis, Stefan Larimore, and Siva Rajamanickam
% Developed in collaboration with J. Gilbert and E. Ng.
help ccolamd_test
global ccolamd... |
github | lcnhappe/happe-master | klu_make.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/KLU/MATLAB/klu_make.m | 10,922 | utf_8 | e85d62511e714298f5a2601c105ef2fe | function klu_make (with_cholmod)
%KLU_MAKE compiles the KLU mexFunctions
%
% Example:
% klu_make % compiles KLU without CHOLMOD
% klu_make (1) % with CHOLMOD, CAMD, CCOLAMD, and METIS
%
% KLU relies on AMD, COLAMD, and BTF for its ordering options, and can
% optionally use CHOLMOD, CCOLAMD, CAMD, ... |
github | lcnhappe/happe-master | cs_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CSparse/MATLAB/cs_install.m | 1,729 | utf_8 | 698e3a7be8710df4bca038a373f4850f | function cs_install (do_pause)
%CS_INSTALL: compile and install CSparse for use in MATLAB.
% Your current working directory must be CSparse/MATLAB in order to use this
% function.
%
% The directories
%
% CSparse/MATLAB/CSparse
% CSparse/MATLAB/Demo
% CSparse/MATLAB/UFget
%
% are added to yo... |
github | lcnhappe/happe-master | cs_make.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CSparse/MATLAB/CSparse/cs_make.m | 6,443 | utf_8 | db813bf30398d17dfe66ed1f938ee591 | function [objfiles, timestamp_out] = cs_make (f)
%CS_MAKE compiles CSparse for use in MATLAB.
% Usage:
% cs_make
% [objfiles, timestamp] = cs_make (f)
%
% With no input arguments, or with f=0, only those files needing to be
% compiled are compiled (like the Unix/Linux/GNU "make" command, but not
% r... |
github | lcnhappe/happe-master | mynormest1.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CSparse/MATLAB/Test/mynormest1.m | 1,843 | utf_8 | 0f6e7b3dd575c4dbfa809e784838035e | function est = mynormest1 (L, U, P, Q)
%MYNORMEST1 estimate norm(A,1), using LU factorization (L*U = P*A*Q).
%
% Example:
% est = mynormest1 (L, U, P, Q)
% See also: testall
% Copyright 2006-2007, Timothy A. Davis.
% http://www.cise.ufl.edu/research/sparse
n = size (L,1) ;
est = 0 ;
S = zeros (n,1) ;
for k = ... |
github | lcnhappe/happe-master | testall.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CSparse/MATLAB/Test/testall.m | 1,517 | utf_8 | 221311b233cabd5b041462eeed288254 | function testall
%TESTALL test all CSparse functions (run tests 1 to 28 below)
%
% Example:
% testall
% See also: cs_demo
% Copyright 2006-2007, Timothy A. Davis.
% http://www.cise.ufl.edu/research/sparse
h = waitbar (0, 'CSparse') ;
cs_test_make % compile all CSparse, Demo, Text, and Test mexFunctions
... |
github | lcnhappe/happe-master | umfpack_report.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UMFPACK/MATLAB/umfpack_report.m | 16,015 | utf_8 | ab2ab9204411376267d5931f57b6b59b | function umfpack_report (Control, Info)
%UMFPACK_REPORT prints optional control settings and statistics
%
% Example:
% umfpack_report (Control, Info) ;
%
% Prints the current Control settings for umfpack2, and the statistical
% information returned by umfpack2 in the Info array. If Control is
% an empty matrix... |
github | lcnhappe/happe-master | umfpack_make.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UMFPACK/MATLAB/umfpack_make.m | 12,201 | utf_8 | c47a8208e044186c2dd6795d63bbe158 | function umfpack_make (lapack)
%UMFPACK_MAKE to compile umfpack2 for use in MATLAB
%
% Compiles the umfpack2 mexFunction and then runs a simple demo.
%
% Example:
% umfpack_make % use default LAPACK and BLAS
% umfpack_make ('lcc_lib/libmwlapack.lib') % for Windows
% umfpack_make ... |
github | lcnhappe/happe-master | umfpack_btf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UMFPACK/MATLAB/umfpack_btf.m | 4,651 | utf_8 | 905709090e298d8bfd5e9937181c95b6 | function [x, info] = umfpack_btf (A, b, Control)
%UMFPACK_BTF factorize A using a block triangular form
%
% Example:
% x = umfpack_btf (A, b, Control)
%
% solve Ax=b by first permuting the matrix A to block triangular form via dmperm
% and then using UMFPACK to factorize each diagonal block. Adjacent 1-by-1
% blocks... |
github | lcnhappe/happe-master | cs_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CXSparse_newfiles/MATLAB/cs_install.m | 1,625 | utf_8 | 7431badf82b77fa1911f89c54dbbb33c | function cs_install (do_pause)
%CS_INSTALL: compile and install CXSparse for use in MATLAB.
% Your current working directory must be CXSparse/MATLAB in order to use this
% function.
%
% The directories
%
% CXSparse/MATLAB/CSparse
% CXSparse/MATLAB/Demo
% CXSparse/MATLAB/UFget
%
% are added ... |
github | lcnhappe/happe-master | camd_demo.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CAMD/MATLAB/camd_demo.m | 3,308 | utf_8 | 823dfa42e18c7d2753b7dadb43e5cde2 | function camd_demo
%CAMD_DEMO a demo of camd, using the can_24 matrix
%
% A demo of CAMD for MATLAB.
%
% Example:
% camd_demo
%
% See also: camd, camd_make
% Copyright 1994-2007, Tim Davis, University of Florida,
% Patrick R. Amestoy, Iain S. Duff, and Yanqing Chen.
% This orders the same matrix as the ANSI C demo,... |
github | lcnhappe/happe-master | cs_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CXSparse/MATLAB/cs_install.m | 1,625 | utf_8 | 7431badf82b77fa1911f89c54dbbb33c | function cs_install (do_pause)
%CS_INSTALL: compile and install CXSparse for use in MATLAB.
% Your current working directory must be CXSparse/MATLAB in order to use this
% function.
%
% The directories
%
% CXSparse/MATLAB/CSparse
% CXSparse/MATLAB/Demo
% CXSparse/MATLAB/UFget
%
% are added ... |
github | lcnhappe/happe-master | cholmod_make.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CHOLMOD/MATLAB/cholmod_make.m | 10,939 | utf_8 | 1fe1b7470711101787a8e019798fbc53 | function cholmod_make (metis_path)
%CHOLMOD_MAKE compiles the CHOLMOD mexFunctions
%
% Example:
% cholmod_make
%
% CHOLMOD relies on AMD and COLAMD, and optionally CCOLAMD, CAMD, and METIS.
% All but METIS are distributed with CHOLMOD. To compile CHOLMOD to use METIS
% you must first place a copy of the metis-4.0 di... |
github | lcnhappe/happe-master | graph_demo.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CHOLMOD/MATLAB/graph_demo.m | 2,476 | utf_8 | d68493e617f06b2d5a601b7cb3b91a33 | function graph_demo (n)
%GRAPH_DEMO graph partitioning demo
% graph_demo(n) constructs an set of n-by-n 2D grids, partitions them, and
% plots them in one-second intervals. n is optional; it defaults to 60.
%
% Example:
% graph_demo
%
% See also DELSQ, NUMGRID, GPLOT, TREEPLOT
% Copyright 2006-2007, T... |
github | lcnhappe/happe-master | cholmod_demo.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CHOLMOD/MATLAB/cholmod_demo.m | 3,684 | utf_8 | 366c6ffc28d9204098b51142c5e72445 | function cholmod_demo
%CHOLMOD_DEMO a demo for CHOLMOD
%
% Tests CHOLMOD with various randomly-generated matrices, and the west0479
% matrix distributed with MATLAB. Random matrices are not good test cases,
% but they are easily generated. It also compares CHOLMOD and MATLAB on the
% sparse matrix problem used in the... |
github | lcnhappe/happe-master | test15.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CHOLMOD/MATLAB/Test/test15.m | 3,742 | utf_8 | 138acfd9c60538711b73c3f3938a3644 | function test15 (nmat)
%TEST15 test symbfact2 vs MATLAB
% Example:
% test15(nmat)
% See also cholmod_test
% Copyright 2006-2007, Timothy A. Davis, University of Florida
fprintf ('=================================================================\n');
index = UFget ;
% only test matrices with nrows = 109000 or less... |
github | lcnhappe/happe-master | test26.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/CHOLMOD/MATLAB/Test/test26.m | 1,919 | utf_8 | 76a21ab29ef4ddc3b64ae785a716c51a | function test26 (do_metis)
%TEST26 test logical full and sparse matrices
% Example:
% test26
% See also cholmod_test
% Copyright 2006-2007, Timothy A. Davis, University of Florida
fprintf ('=================================================================\n');
fprintf ('test26: test logical full and sparse matrices... |
github | lcnhappe/happe-master | meshnd_example.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MESHND/meshnd_example.m | 2,391 | utf_8 | b73633dae23b3d361785dff0a3577e93 | function meshnd_example
%MESHND_EXAMPLE example usage of meshnd and meshsparse.
%
% Example:
% meshnd_example
%
% See also meshnd.
% Copyright 2007, Timothy A. Davis, Univ. of Florida
help meshnd
% 2D mesh, compare with Cleve Moler's demos
m = 7 ;
n = 7 ;
[G p pinv Gnew] = meshnd (m,n) ;
fprintf ('Original mesh:... |
github | lcnhappe/happe-master | meshnd.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MESHND/meshnd.m | 3,103 | utf_8 | f852a9aec88b5fcf8d39f1afe5d6eb25 | function [G, p, pinv, Gnew] = meshnd (arg1,n,k)
%MESHND creation and nested dissection of a regular 2D or 3D mesh.
% [G p pinv Gnew] = meshnd (m,n) constructs an m-by-n 2D mesh G, and then finds
% a permuted mesh Gnew where Gnew = pinv(G) and G = p(Gnew). meshnd(m,n,k)
% creates an m-by-n-by-k 3D mesh.
%
% [G p pinv G... |
github | lcnhappe/happe-master | ssmult_install.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/SSMULT/ssmult_install.m | 6,256 | utf_8 | ca7bbd625a43cfd1c3cec4e2980ff27c | function ssmult_install (dotests)
%SSMULT_INSTALL compiles, installs, and tests ssmult.
% Note that the "lcc" compiler provided with MATLAB for Windows can generate
% slow code; use another compiler if possible. Your current directory must be
% SSMULT for ssmult_install to work properly. If you use Linux/Unix/Mac, I
... |
github | lcnhappe/happe-master | pagerankdemo.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/pagerankdemo.m | 6,301 | utf_8 | 2a933a39d67b7f916bc79b747055d403 | function pagerankdemo (steps)
% PAGERANKDEMO draw a 6-node web and compute its pagerank
%
% PAGERANKDEMO draws the 6-node "tiny web" in Section 2.11 of "Numerical
% Computing with MATLAB", by Cleve Moler, SIAM, 2004. It then simulates the
% computation of Google's PageRank algorithm, by randomly selecting links to
% t... |
github | lcnhappe/happe-master | gipper.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/gipper.m | 7,444 | utf_8 | b1e1e96f392196e2afd7ffa43315ff4d | function files_out = gipper (directory, include, exclude, exclude_hidden)
%GIPPER zip selected files and subdirectories (gipper = grep + zip)
%
% files = gipper (directory, include, exclude, exclude_hidden) ;
%
% Creates a zip file of all files and subdirectories in a directory. A file in
% the directory or any of i... |
github | lcnhappe/happe-master | shellgui.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/shellgui/shellgui.m | 11,655 | utf_8 | 989265d0d56df9f25461086f5878b569 | function varargout = shellgui(varargin)
%SHELLGUI GUI interface for seashell function
% Timothy A. Davis, Chapman Hall / CRC Press, 7th edition.
% Controls the parameters a, b, c, n, azimuth, and elevation, using
% sliders. To the whole range of each parameter, click on the button to
% the right of each slider... |
github | lcnhappe/happe-master | spok_test.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/spok/spok_test.m | 1,896 | utf_8 | fb75171c79dfb5ddc82c0cd60c48db62 | function spok_test
%SPOK_TEST installs and tests SPOK
%
% Example:
% spok_install
%
% See also sparse, spok, spok_install
% Copyright 2008, Tim Davis, University of Florida
% compile and install spok
help spok ;
spok_install ;
c = pwd ;
cd private ;
mex spok_invalid.c ;
cd (c) ;
% test with valid matrices
fprintf ... |
github | lcnhappe/happe-master | waitex.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/waitmex/waitex.m | 1,047 | utf_8 | 65beaefa68f21bc993f23673d3d2c040 | function result = waitex
%WAITEX same as the waitexample mexFunction, just in M instead of C.
% The only purpose of this function is to serve as a precise description of
% what the waitexample mexFunction does.
%
% Example:
% waitex % draw a waitbar, make progress, and then close the waitbar
% h = waitex ;... |
github | lcnhappe/happe-master | find_components_example.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/MATLAB_Tools/find_components/find_components_example.m | 3,897 | utf_8 | a53a3fbb3ee31c9062389fd2faf0f302 | function find_components_example(example)
%FIND_COMPONENTS_EXAMPLE gives an example usage of find_components.
%
% Example:
% find_components_example(0) % a small example, with lots of printing
% find_components_example(1) % Doug's example, with lots of printing
% find_components_example(2) % a large example, j... |
github | lcnhappe/happe-master | spqr_make.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/SPQR/MATLAB/spqr_make.m | 17,403 | utf_8 | b2219499a73fd1e89a27ba4c1286be03 | function spqr_make (metis_path,opt1,opt2)
%SPQR_MAKE compiles the SuiteSparseQR mexFunctions
%
% Example:
% spqr_make
%
% SuiteSparseQR relies on CHOLMOD, AMD, and COLAMD, and optionally CCOLAMD,
% CAMD, and METIS. All but METIS are distributed with CHOLMOD. To compile
% SuiteSparseQR to use METIS you must first pl... |
github | lcnhappe/happe-master | UFpage.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UFcollection/UFpage.m | 18,515 | utf_8 | f7bbbbf0f99dcc348d3d968ee195f656 | function UFpage (matrix, index, figures)
%UFPAGE create web page for a matrix in UF Sparse Matrix Collection
%
% Usage:
% UFpage (matrix, index, figures)
%
% matrix: id or name of matrix to create the web page for.
% index: the UF index, from UFget.
% figures: 1 if the figures are to be created, 0 otherwise
%
% Ex... |
github | lcnhappe/happe-master | UFread.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UFcollection/UFread.m | 13,594 | utf_8 | f661a98aa4deaee771002bd338d97870 | function Problem = UFread (directory, tmp)
%UFREAD read a Problem in Matrix Market or Rutherford/Boeing format
% containing a set of files created by UFwrite, in either Matrix Market or
% Rutherford/Boeing format. See UFwrite for a description of the Problem struct.
%
% Usage: Problem = UFread (directory)
%
% Example:
... |
github | lcnhappe/happe-master | UFwrite.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/gpstuff/SuiteSparse/UFcollection/UFwrite.m | 17,757 | utf_8 | c4256659f09dc533119bcaa94146d846 | function UFwrite (Problem, Master, arg3, arg4)
%UFWRITE write a Problem in Matrix Market or Rutherford/Boeing format
% containing a set of text files in either Matrix Market or Rutherford/Boeing
% format. The Problem can be read from the files back into MATLAB via UFread.
% See http://www.cise.ufl.edu/research/sparse/... |
github | lcnhappe/happe-master | isLegal.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/minFunc/isLegal.m | 111 | utf_8 | 201b5c177a5a05ba3a3322077c1acae1 |
function [legal] = isLegal(v)
legal = sum(any(imag(v(:))))==0 & sum(isnan(v(:)))==0 & sum(isinf(v(:)))==0;
end |
github | lcnhappe/happe-master | WolfeLineSearch.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/minFunc/WolfeLineSearch.m | 11,132 | utf_8 | bbe46a7fa9b05110d6c9f2ecba335fd1 | function [t,f_new,g_new,funEvals,H] = WolfeLineSearch(...
x,t,d,f,g,gtd,c1,c2,LS,maxLS,tolX,debug,doPlot,saveHessianComp,funObj,varargin)
%
% Bracketing Line Search to Satisfy Wolfe Conditions
%
% Inputs:
% x: starting location
% t: initial step size
% d: descent direction
% f: function value at starting lo... |
github | lcnhappe/happe-master | minFunc_processInputOptions.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dmlt/external/minFunc/minFunc_processInputOptions.m | 3,252 | utf_8 | 72f66f58081120213a4f63f1bb4f42df |
function [verbose,verboseI,debug,doPlot,maxFunEvals,maxIter,tolFun,tolX,method,...
corrections,c1,c2,LS_init,LS,cgSolve,SR1,cgUpdate,initialHessType,...
HessianModify,Fref,useComplex,numDiff,LS_saveHessianComp,...
DerivativeCheck,Damped,HvFunc,bbType,cycle,boundStepLength,...
HessianIter,outputFcn] = .... |
github | lcnhappe/happe-master | betapdf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/betapdf.m | 4,091 | utf_8 | 22972826a645e022df6b35f62bc7c557 | % Copyright (C) 2012 Rik Wehbring
% Copyright (C) 1995-2012 Kurt Hornik
% Copyright (C) 2010 Christos Dimitrakakis
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Foundation; ei... |
github | lcnhappe/happe-master | nansum.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/nansum.m | 194 | utf_8 | d26aaa8d5695a2cd15c51e72c3d4a186 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
x(isnan(x)) = 0;
if nargin==1
y = sum(x);
else
y = sum(x,dim);
end
end % function
|
github | lcnhappe/happe-master | betacdf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/betacdf.m | 2,801 | utf_8 | e1af8d1223714ddeef6f5d873bf36c57 | % Copyright (C) 2012 Rik Wehbring
% Copyright (C) 1995-2012 Kurt Hornik
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3 of the License, or (at
% you... |
github | lcnhappe/happe-master | nanstd.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/nanstd.m | 248 | utf_8 | fa0dc38960ab4c502a685ee11ebb3328 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
end % function
|
github | lcnhappe/happe-master | finv.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/finv.m | 1,923 | utf_8 | fd552f83d58acd399ecde455a11523d0 | % Copyright (C) 2012 Rik Wehbring
% Copyright (C) 1995-2012 Kurt Hornik
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3 of the License, or (at
% you... |
github | lcnhappe/happe-master | nanmean.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/nanmean.m | 245 | utf_8 | 8ab56ab826c1e69fd89a8937baae4bf0 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
if nargin<2
N = sum(~isnan(x));
y = nansum(x) ./ N;
else
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
end % function
|
github | lcnhappe/happe-master | tinv.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/tinv.m | 7,513 | utf_8 | 8aca90435b847d43ade0cd829db21624 | function x = tinv(p,v);
% TINV Inverse of Student's T cumulative distribution function (cdf).
% X=TINV(P,V) returns the inverse of Student's T cdf with V degrees
% of freedom, at the values in P.
%
% The size of X is the common size of P and V. A scalar input
% functions as a constant matrix of the same s... |
github | lcnhappe/happe-master | betainv.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/stats/betainv.m | 2,699 | utf_8 | 105a6134b0eb25f2c863062d582e2040 | % Copyright (C) 2012 Rik Wehbring
% Copyright (C) 1995-2012 Kurt Hornik
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 3 of the License, or (at
% you... |
github | lcnhappe/happe-master | arrow.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fileexchange/arrow.m | 58,340 | utf_8 | e4ceab5f059e48a1443dff678cf4be7f | function [h,yy,zz] = arrow(varargin)
% ARROW Draw a line with an arrowhead.
%
% ARROW(Start,Stop) draws a line with an arrow from Start to Stop (points
% should be vectors of length 2 or 3, or matrices with 2 or 3
% columns), and returns the graphics handle of the arrow(s).
%
% ARROW uses the mouse (cl... |
github | lcnhappe/happe-master | icp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fileexchange/icp.m | 19,293 | utf_8 | 344fc5e77eb0c82e12ab2f075f996060 | function [TR, TT, ER, t, info] = icp(q,p,varargin)
% Perform the Iterative Closest Point algorithm on three dimensional point
% clouds.
%
% [TR, TT] = icp(q,p) returns the rotation matrix TR and translation
% vector TT that minimizes the distances from (TR * p + TT) to q.
% p is a 3xm matrix and q is a 3xn matrix.
%
... |
github | lcnhappe/happe-master | DataHash.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/fileexchange/DataHash.m | 18,999 | utf_8 | 8e6737cdb54095fc9656428c35490821 | function Hash = DataHash(Data, Opt)
% DATAHASH - Checksum for Matlab array of any type
% This function creates a hash value for an input of any type. The type and
% dimensions of the input are considered as default, such that UINT8([0,0]) and
% UINT16(0) have different hash values. Nested STRUCTs and CELLs are parsed
%... |
github | lcnhappe/happe-master | meshresample.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/meshresample.m | 1,665 | utf_8 | a84fc4c4bfcb7894e079f34b8a9c6f9d | function [node,elem]=meshresample(v,f,keepratio)
%
% [node,elem]=meshresample(v,f,keepratio)
%
% resample mesh using CGAL mesh simplification utility
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% date: 2007/11/12
%
% input:
% v: list of nodes
% f: list of surface elements (each row for each triangle... |
github | lcnhappe/happe-master | savejson.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/savejson.m | 14,306 | utf_8 | efe098b229009f38be24329e7d8af75d | function json=savejson(rootname,obj,varargin)
%
% json=savejson(rootname,obj,filename)
% or
% json=savejson(rootname,obj,opt)
% json=savejson(rootname,obj,'param1',value1,'param2',value2,...)
%
% convert a MATLAB object (cell, struct or array) into a JSON (JavaScript
% Object Notation) string
%
% author: Qianqian Fa... |
github | lcnhappe/happe-master | loadjson.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/loadjson.m | 16,225 | ibm852 | f1745f9ac3fd57bd26f86b59f45cfb39 | function data = loadjson(fname,varargin)
%
% data=loadjson(fname,opt)
% or
% data=loadjson(fname,'param1',value1,'param2',value2,...)
%
% parse a JSON (JavaScript Object Notation) file or string
%
% authors:Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% date: 2011/09/09
% Nedialko Krouchev: http:... |
github | lcnhappe/happe-master | surfaceclean.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/surfaceclean.m | 1,015 | utf_8 | 7e36bba6243ce6e4c9645e4599663dfe | function f=surfaceclean(f,v)
%
% f=surfaceclean(f,v)
%
% remove surface patches that are located inside
% the bounding box faces
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% date: 2008/04/08
%
% input:
% v: surface node list, dimension (nn,3)
% f: surface face element list, dime... |
github | lcnhappe/happe-master | plotsurf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/plotsurf.m | 3,890 | utf_8 | cb1cd7f508119c87ac12155d80e72f2d | function hm=plotsurf(node,face,varargin)
%
% hm=plotsurf(node,face,opt)
%
% plot 3D surface meshes
%
% author: Qianqian Fang <fangq at nmr.mgh.harvard.edu>
%
% input:
% node: node coordinates, dimension (nn,3); if node has a
% 4th column, it will be used to set the color at each node.
% face: tr... |
github | lcnhappe/happe-master | readoff.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/iso2mesh/readoff.m | 1,446 | utf_8 | aece4a72343e6bece72b82ced7e8fbe6 | function [node,elem]=readoff(fname)
%
% [node,elem]=readoff(fname)
%
% read Geomview Object File Format (OFF)
%
% author: Qianqian Fang (fangq<at> nmr.mgh.harvard.edu)
% date: 2008/03/28
%
% input:
% fname: name of the OFF data file
%
% output:
% node: node coordinates of the mesh
% elem: list of elements of t... |
github | lcnhappe/happe-master | om_check_vol.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/om_check_vol.m | 1,911 | utf_8 | 2ad2a2270818ab0b2323ee1513c5a541 | function status = om_check_vol(vol)
% OM_CHECK_VOL Check meshes of volume conductor for BEM modeling
% [STATUS] = OM_CHECK_VOL(VOL)
%
% returns 1 if there is a problem with geometry
% else returns 0
%
% Copyright (C) 2010, Alexandre Gramfort, INRIA
% $Id$
% $LastChangedBy: alegra $
% $LastChangedDate: 20... |
github | lcnhappe/happe-master | testOpenMEEGeeg.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/testOpenMEEGeeg.m | 3,442 | utf_8 | da3bbd9c98535f6d189d29d80e72d0f0 | function testOpenMEEGeeg
% TEST testOpenMEEGeeg
% Test the computation of an EEG leadfield with OpenMEEG
addpath(cd) % Make sure current folder is in the path
%% Set the position of the probe dipole
pos = [0 0 70];
%% Set the radius and conductivities of each of the compartments
% 4 Layers
r = [85 88 92 100];
c = ... |
github | lcnhappe/happe-master | openmeeg.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/openmeeg.m | 4,515 | utf_8 | 0fd160989b8ea14353b3fae3fe6b2d9b | function [vol] = openmeeg(vol, isolated)
% OPENMEEG computes a symmetric BEM system matrix
%
% Use as
% [vol] = openmeeg(vol, isolated)
%
% Attention: the normals of the mesh describing the volume conductor are by
% FieldTrip convention pointing outwards (with respect to the mesh center),
% whereas OpenMEEG binari... |
github | lcnhappe/happe-master | openmeeg_dsm.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/openmeeg_dsm.m | 4,055 | utf_8 | b5927ebd6c389bc30f4183cb25c4499f | function [dsm] = openmeeg_dsm(pos, vol, flag)
% OPENMEEG_DSM computes the OpenMEEG DSM matrix
% i.e. Right hand side in the potential equation
%
% Use as
% [dsm] = openmeeg_dsm(po, vol, flag)
%
% flag = 1 non adaptive algorithm: does not try to approximate the
% potential in the neighborhodd of the lead... |
github | lcnhappe/happe-master | openmeeg_megm.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/openmeeg_megm.m | 3,786 | utf_8 | 65f11e114798758fdc4c4b43287f55c1 | function [h2mm, s2mm] = openmeeg_megm(pos, vol, sens)
% OPENMEEG_MEGM computes the OpenMEEG H2MM and S2MM matrices
% i.e. the contribution to MEG from the potential and from the source
%
% Use as
% [h2mm,s2mm] = openmeeg_megm(vol, isolated)
% Copyright (C) 2010, Emmanuel Olivi
% INRIA Athena Project Te... |
github | lcnhappe/happe-master | om_normals.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/om_normals.m | 1,572 | utf_8 | ca0342ba8f9473f946c7df879e4a82c8 | function [nrm] = normals(pos, tri, opt)
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% Use as
% nrm = normals(pos, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
if nargin<3
opt='vertex';
elseif (opt(1)=='... |
github | lcnhappe/happe-master | normals.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/openmeeg/private/normals.m | 2,346 | utf_8 | fc0a8ff8ded57a42b7f5436338ed6788 | function [nrm] = normals(pnt, tri, opt);
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% [nrm] = normals(pnt, tri, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.... |
github | lcnhappe/happe-master | dipoli.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/dipoli/dipoli.m | 4,457 | utf_8 | f2e2fe3dbd61e25b90d68adb9202f375 | function [vol] = dipoli(vol, isolated)
% DIPOLI computes a BEM system matrix
%
% Use as
% [vol] = dipoli(vol, isolated)
% Copyright (C) 2005-2008, Robert Oostenveld
%
% $Log: dipoli.m,v $
% Revision 1.3 2008/12/24 10:25:41 roboos
% cleaned up the dipoli wrapper, replaced the binary by a better one and added a cop... |
github | lcnhappe/happe-master | scpopen.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/biosig/private/scpopen.m | 57,392 | utf_8 | efe5be2dea8235810f4b98539abfdbd1 | function [HDR]=scpopen(arg1,CHAN,arg4,arg5,arg6)
% SCPOPEN reads and writes SCP-ECG files
%
% SCPOPEN is an auxillary function to SOPEN for
% opening of SCP-ECG files for reading ECG waveform data
%
% Use SOPEN instead of SCPOPEN
%
% See also: fopen, SOPEN,
% $Id$
% (C) 2004,2006,2007,2008 by Alois Schloegl <a... |
github | lcnhappe/happe-master | openxml.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/biosig/private/openxml.m | 13,850 | utf_8 | a2522f85226716568c1d40ee7e6666f6 | function [HDR]=openxml(arg1,CHAN,arg4,arg5,arg6)
% OPENXML reads XML files and tries to extract biosignal data
%
% This is an auxilary function to SOPEN.
% Use SOPEN instead of OPENXML.
%
%
% HDR = openxml(HDR);
%
% HDR contains the Headerinformation and internal data
%
% see also: SOPEN, SREAD, SSEEK, STELL, SCLOSE,... |
github | lcnhappe/happe-master | matread.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/biosig/private/matread.m | 10,217 | utf_8 | 0c42f4955d1ed526f04022f79b06fd87 | function [HDR,data,t]=matread(HDR,arg2,idxlist)
% MATRREAD Loads (parts of) data stored in Matlab-format
%
% [HDR,data,timeindex]=matread(HDR,block_number, [startidx, endidx])
% This is the recommended use for Matlab-files generated from ADICHT data
% Before using MATREAD, HDR=MATOPEN(filename, 'ADI', ...) must be app... |
github | lcnhappe/happe-master | GE_createSPMmat.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/GE_createSPMmat.m | 1,480 | utf_8 | 9da4628d724922838247f14727e25722 | %%%%%%%%%%%%%%%%%%%%%%%%
% %
% Write SPM mat file %
% %
%%%%%%%%%%%%%%%%%%%%%%%%
function M = GE_createSPMmat(im_hdr, scandir)
%
% Put the appropriate translations and rotations to the M matrix
% given the information in the image header and the direction of
% acquisition
%
%... |
github | lcnhappe/happe-master | NewCs.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/NewCs.m | 20,018 | utf_8 | 02f4f3b94b14be6adab8ee52224b2dc3 | function [cs] = NewCs(Name, win, p1, p2, p3, p4, p5)
%
% [cs] = NewCs (Name, Con, P1, P2)
%
%Purpose:
% Create a command structure for passing to TellAfni
%
%
%Input Parameters:
% Name: Name of command, see AFNI's README.driver for all possibilities
% Example: SET_THRESHOLD
% To see a list ... |
github | lcnhappe/happe-master | New_HEAD.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/New_HEAD.m | 8,432 | utf_8 | 3213a4c8b09f49855cafdf9925e5b3d3 | function [err,Info, opt] = New_HEAD (opt)
%
% [err,Info, Opt] = New_HEAD (Opt)
%
%Purpose:
% A function for the likes of Greg Detre.
% It makes the creation of an AFNI dataset
% from a 3 or 4 dimensional matrix in matlab a breeze.
%
%
%
%Input Parameters:
% opt is an options structure with the follow... |
github | lcnhappe/happe-master | PeakFinder.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/PeakFinder.m | 13,081 | utf_8 | 2f79a40d4194ae7e9ad3a34c87589a80 | function [R, e] = PeakFinder(vvec, Opt)
%Example: PeakFinder('Resp*.1D');
% or PeakFinder(v) where v is a column vector
% if v is a matrix, each column is processed separately.
%
%clear all but vvec (useful if I run this function as as script)
keep('vvec', 'Opt');
e = 0;
R = struct([]);
if (nargin < 2) Opt = struct();... |
github | lcnhappe/happe-master | rgbdectohex.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/rgbdectohex.m | 6,032 | utf_8 | fca22486bef72eb78e71977479b7940b | function [Cs] = rgbdectohex (Mrgb,strg)
%
% Mode 1:
% [Cs] = rgbdectohex (Mrgb,[string])
% Mode 2:
% rgbdectohex
%
% Mode 1:
%This function takes as an input the rgb matrix Mrgb (size is Nx3)
% where each row represents the rgb gun values of a color.
% gun values should be integers between 0 and 255
%
... |
github | lcnhappe/happe-master | afni_niml_writesimple.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_niml_writesimple.m | 4,503 | utf_8 | 231807f9346f2bfcc56fa5f3eda8ff00 | function D=afni_niml_writesimple(S,fn)
% writes surface data in a 'simple' struct in NIML format to a file.
%
% D=AFNI_NIML_WRITESIMPLE(fn,S) writes surface data S to the file FN.
% S should be a struct with a field S.data, and optionally S.stats,
% S.labels, S.history, S.types, and S.node_indices.
% This function ret... |
github | lcnhappe/happe-master | zglobb.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/zglobb.m | 3,946 | utf_8 | 508195b45ee39c7296447826b75515f4 | function [err,ErrMessage, NameList] = zglobb (Identifiers, Opt)
%
% [err, ErrMessage, List] = zglobb (Identifiers, [Opt])
%or
% [List] = zglobb (Identifiers, [Opt])
%Purpose:
% returns the list of files specified in Identifiers
%
%
%Input Parameters:
% Identifiers is a cellstr identifying which briks to ... |
github | lcnhappe/happe-master | afni_niml_parse.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_niml_parse.m | 4,013 | utf_8 | 928c1d463779f609cd8549cfec5a0a37 | function niml = afni_niml_parse(s)
% Simple parsing routine for AFNI NIML datasets
%
% N=AFNI_NIML_PARSE(S) parses the niml string S and returns a parsed
% structure P.
%
% P can either be an niml element, or a group of niml elements. In the
% formder case, P contains a field .data; in the latter, a cell .nodes.
%
% If... |
github | lcnhappe/happe-master | afni_fig_interface.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_fig_interface.m | 3,035 | utf_8 | a6e27aaa75a4fe2aebabe4db5d20acfb | function afni_fig_interface(src, evnt)
cf = gcf;
figure(src);
% evnt
ud = get(src,'UserData');
if (isempty(ud) | ~isfield(ud,'axes_lock')),
ud = default_ud();
set(src,'UserData',ud);
end
if ( lower(evnt.Character) == 'l' ),
ud.axes_lock = ~ud.axes_lock;
set (src,'UserD... |
github | lcnhappe/happe-master | TellAfni.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/TellAfni.m | 5,472 | utf_8 | 77dce5f5339989af26f3e100da6bcfc3 | function [err] = TellAfni (cs, opt)
%
% [err] = TellAfni (cs, opt)
%
%Purpose:
% Drive AFNI
%
%
%Input Parameters:
% cs: An Nx1 vector of communication command structures
% It is obtained using NewCs structure
% opt: An optional options structure
% .QuitOnErr (0/[1]): Return from function if ... |
github | lcnhappe/happe-master | zinputdlg.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/zinputdlg.m | 16,591 | utf_8 | 63dc0806876466dc33fef8fbdfeb45c5 | function Answer=zinputdlg(Prompt, Title, NumLines, DefAns, Resize)
% A copy of inputdlg.m , modified to have better looking font settings
%ZINPUTDLG Input dialog box.
% ANSWER = ZINPUTDLG(PROMPT) creates a modal dialog box that returns user
% input for multiple prompts in the cell array ANSWER. PROMPT is a cell
% ar... |
github | lcnhappe/happe-master | afni_niml_read.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_niml_read.m | 2,791 | utf_8 | 3da5cff1cf07ffd470bd42539f8078b9 | function [p,s]=afni_niml_read(fn)
% simple function to read niml files
%
% P=AFNI_NIML_READ(FN) reads a file FN and returns a NIML structure P.
% [P,S]=AFNI_NIML_READ(FN) also returns the file contents S
%
% If FN refers to a file in another format than ASCII NIML, an attempt is
% made to convert the file to this forma... |
github | lcnhappe/happe-master | afni_nel_parse.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_nel_parse.m | 1,763 | utf_8 | 62fbd076a3c4430f06f6385abc18b2d8 | function [nel] = afni_nel_parse(nellcell)
%should really check that this is nel and not ngr ...
%assuming we have nel
%get the header part
cnel = char(nellcell); clear nellcell;
ncnel = length(cnel);
%break up into head and data
expr = '(?<head><(\w+).*?>)(?<data>.*)<';
%usi... |
github | lcnhappe/happe-master | afni_niml_print.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/afni_niml_print.m | 5,521 | utf_8 | 9dbc69da949e82e64071c668290ac2da | function s=afni_niml_print(p)
% takes a NIML data structure and converts it to string representation
%
% S=AFNI_NIML_PRINT(P) takes an NIML datastructure P and returns a string
% representation S.
%
% This function is more or less the inverse of AFNI_NIML_PARSE.
%
% The current implementation will take any struct that... |
github | lcnhappe/happe-master | CA_EZ_Prep.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/CA_EZ_Prep.m | 14,358 | utf_8 | af87e1ccd31dc096f0a411e877de8dd9 | function [MapMPM, MapML, aur] = CA_EZ_Prep()
% A function to process a new Eickhoff, Amunts and Zilles CA toolbox
% The function creates new versions of AFNI's source files
% thd_ttatlas_CA_EZ.c and thd_ttatlas_CA_EZ.h .
% The new files created are called thd_ttatlas_CA_EZ-auto.c and thd_ttatlas_CA_EZ-auto.h
% must be ... |
github | lcnhappe/happe-master | ROIcmap.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/afni/ROIcmap.m | 3,688 | utf_8 | 93376acea9697c3dce4c73aea3838d9b | function [M] = ROIcmap(nc,opt)
% [M] = ROIcmap([nc],[opt]);
% creates a colormap with
% no color too close to grayscale,
% no two consecutive colors too close
% no colors exeedingly close to another in the map
% no colors too close to a background color (optional)
% nc: number... |
github | lcnhappe/happe-master | bemcp_example.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/bemcp/bemcp_example.m | 21,663 | utf_8 | ee954ecd4779bb13a017d139b7a6acb1 |
function bemcp_example
% Simple function to test/demonstrate how the Boundary element functions are
% used in combination with Fildtrip/Forwinv routines.
%
% 1. A model is created as 3 concentric meshed spheres (using FT's
% icosahedron routines),
% 2. then random electrodes are placed on the upper part of the outer... |
github | lcnhappe/happe-master | hcluster.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/hcluster.m | 3,513 | utf_8 | 4f1454878c289ef16d6355f9b24353ce | function [P,Z,order]=hcluster(D,link)
%function [P,Z,order] = hcluster(D,link)
%
%PURPOSE
%
%To perform a hierarchical agglomerative clustering on a distance
%matrix. Returns partition vectors for each level of the clustering
%hierarchy and information for visualizing the clustering hierarchy
%as a dendrogram.
%
%INPU... |
github | lcnhappe/happe-master | cca.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/cca.m | 8,088 | utf_8 | b5659dc842e6c1fde35175caed2d8ea2 | function [P] = cca(D, P, epochs, Mdist, alpha0, lambda0)
%CCA Projects data vectors using Curvilinear Component Analysis.
%
% P = cca(D, P, epochs, [Dist], [alpha0], [lambda0])
%
% P = cca(D,2,10); % projects the given data to a plane
% P = cca(D,pcaproj(D,2),5); % same, but with PCA initialization
% P = ... |
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