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value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
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github | lcnhappe/happe-master | icassoEst.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/icassoEst.m | 8,817 | utf_8 | adb9102f63b02f7a42b3da5bdcf803ae | function sR=icassoEst(mode,X,M,varargin)
%function sR=icassoEst(mode,X,M,['FastICAparamName1',value1,'FastICAparamName2',value2,...])
%
%PURPOSE
%
%To compute randomized ICA estimates M times from data X. Output of
%this function (sR) is called 'Icasso result structure' (see
%icassoStruct). sR keeps the on all the meth... |
github | lcnhappe/happe-master | icassoStruct.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/icassoStruct.m | 8,190 | utf_8 | d80e7670415d1867f114b16bebb620f6 | function sR=icassoStruct(X)
%function sR=icassoStruct([X])
%
%PURPOSE
%
%To initiate an Icasso result data structure which is meant for
%storing and keeping organized all data, parameters and results
%when performing the Icasso procedure.
%
%EXAMPLE OF BASIC USAGE
%
% S=icassoStruct(X);
%
%creates an Icasso result st... |
github | lcnhappe/happe-master | som_dendrogram.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/som_dendrogram.m | 9,039 | utf_8 | 43f32770e95d19d4a12855bd8bfb91f3 | function [h,Coord,Color,height] = som_dendrogram(Z,varargin)
%SOM_DENDROGRAM Visualize a dendrogram.
%
% [h,Coord,Color,height] = som_dendrogram(Z, [[argID,] value, ...])
%
% Z = som_linkage(sM);
% som_dendrogram(Z);
% som_dendrogram(Z,sM);
% som_dendrogram(Z,'coord',co);
%
% Input and output arguments ([]'s ... |
github | lcnhappe/happe-master | corrw.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/corrw.m | 1,654 | utf_8 | b24c05ddd84adfca75a0870878a9c0f7 | function R=corrw(W,D)
%function R=corrw(W,D)
%
%PURPOSE
%
%To compute mutual linear correlation coefficients between M
%independent component estimates using the demixing matrix W and
%the dewhitening matrix D of the original data.
%
% R=W*D*D'*W';
%
%INPUT
%
% W (field W in Icasso struct: demixing matrices)
% D (fi... |
github | lcnhappe/happe-master | reducesim.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/reducesim.m | 3,056 | utf_8 | d2d2a37c6d316586dbfc3da7760af840 | function S=reducesim(S,minLimit,partition,scatter,scatterLimit)
%function S=reducesim(S,minLimit)
% or
%function S=reducesim(S,minLimit,partition,scatter,scatterLimit)
%
%PURPOSE
%
%To reduce the number of lines that are drawn when the similarity
%matrix is visualized. That is, to set similarities below certain
%thres... |
github | lcnhappe/happe-master | clusterhull.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/clusterhull.m | 5,149 | utf_8 | 49c19208dafd1008be107e012aa6f36e | function [h_marker,txtcoord]=clusterhull(mode,coord,partition,color)
%function [h_marker,txtcoord]=clusterhull(mode,coord,partition,[color])
%
%PURPOSE
%
%To draw a cluster visualization where the objects (represented by
%points) belonging to the same cluster are presented by "cluster hulls",
%polygons where the edge o... |
github | lcnhappe/happe-master | vis_valuetype.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/vis_valuetype.m | 7,502 | utf_8 | cb7a373fcda9120d69231b2748371740 | function flag=vis_valuetype(value, valid, str);
% VIS_VALUETYPE Used for type checks in SOM Toolbox visualization routines
%
% flag = vis_valuetype(value, valid, str)
%
% Input and output arguments:
% value (varies) variable to be checked
% valid (cell array) size 1xN, cells are strings or vectors (see below)
... |
github | lcnhappe/happe-master | icassoGet.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/icasso/icassoGet.m | 5,635 | utf_8 | 9a56d24c879fa67d054651240e964543 | function out=icassoGet(sR,field,index)
%function out=icassoGet(sR,field,[index])
%
%PURPOSE
%
%Auxiliary function for obtaining various information from the
%Icasso result data structure. Using icassoGet, you can return
%information related to original data, e.g.: data matrix,
%(de)whitening matrix, total number of es... |
github | lcnhappe/happe-master | spm_input.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_input.m | 89,257 | utf_8 | 74a73562f0562998a037c0c5d7a512c7 | function varargout = spm_input(varargin)
% Comprehensive graphical and command line input function
% FORMATs (given in Programmers Help)
%_______________________________________________________________________
%
% spm_input handles most forms of interactive user input for SPM.
% (File selection is handled by spm_select... |
github | lcnhappe/happe-master | spm_write_sn.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_write_sn.m | 20,195 | utf_8 | 5bb2c4d938b07e035b1552465111fcf7 | function VO = spm_write_sn(V,prm,flags,extras)
% Write Out Warped Images.
% FORMAT VO = spm_write_sn(V,matname,flags,msk)
% V - Images to transform (filenames or volume structure).
% matname - Transformation information (filename or structure).
% flags - flags structure, with fields...
% interp ... |
github | lcnhappe/happe-master | spm_imatrix.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_imatrix.m | 1,499 | utf_8 | 295b97abf7200bfd1af63c3e32aae6fd | function P = spm_imatrix(M)
% returns the parameters for creating an affine transformation
% FORMAT P = spm_imatrix(M)
% M - Affine transformation matrix
% P - Parameters (see spm_matrix for definitions)
%___________________________________________________________________________
% Copyright (C) 2008 Wellcome... |
github | lcnhappe/happe-master | spm_affreg.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_affreg.m | 20,248 | utf_8 | 431e3807877742bdec89d07ce61e87f8 | function [M,scal] = spm_affreg(VG,VF,flags,M,scal)
% Affine registration using least squares.
% FORMAT [M,scal] = spm_affreg(VG,VF,flags,M0,scal0)
%
% VG - Vector of template volumes.
% VF - Source volume.
% flags - a structure containing various options. The fields are:
% WG - Weig... |
github | lcnhappe/happe-master | spm_vol.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_vol.m | 5,475 | utf_8 | 41a73601c2e44259fb8f1f4f3e870558 | function V = spm_vol(P)
% Get header information etc for images.
% FORMAT V = spm_vol(P)
% P - a matrix of filenames.
% V - a vector of structures containing image volume information.
% The elements of the structures are:
% V.fname - the filename of the image.
% V.dim - the x, y and z dimensions of the vo... |
github | lcnhappe/happe-master | spm_jobman.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_jobman.m | 21,324 | utf_8 | 970b3aa24a514dea929b79722697efdc | function varargout = spm_jobman(varargin)
% Main interface for SPM Batch System
% This function provides a compatibility layer between SPM and matlabbatch.
% It translates spm_jobman callbacks into matlabbatch callbacks and allows
% to edit and run SPM5 style batch jobs.
%
% FORMAT job_id = spm_jobman
% job_id =... |
github | lcnhappe/happe-master | spm_eeg_inv_vbecd_disp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_eeg_inv_vbecd_disp.m | 22,913 | UNKNOWN | d298cddd05dcda0aab1c23b6a9f98906 | function spm_eeg_inv_vbecd_disp(action,varargin)
% Display the dipoles as obtained from VB-ECD
%
% FORMAT spm_eeg_inv_vbecd_disp('Init',D)
% Display the latest VB-ECD solution saved in the .inv{} field of the
% data structure D.
%
% FORMAT spm_eeg_inv_vbecd_disp('Init',D, ind)
% Display the ind^th .inv{} cell element, ... |
github | lcnhappe/happe-master | spm_figure.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_figure.m | 32,150 | utf_8 | 8f4bd924a038c03f7d509cc9e37b8395 | function varargout=spm_figure(varargin)
% Setup and callback functions for Graphics window
% FORMAT varargout=spm_figure(varargin)
% - An embedded callback, multi-function function
% - For detailed programmers comments, see format specifications
% in main body of code
%______________________________... |
github | lcnhappe/happe-master | spm_smooth.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_smooth.m | 3,654 | utf_8 | 0f00684dc1b7cb99c88cd50e6a64a20a | function spm_smooth(P,Q,s,dtype)
% 3 dimensional convolution of an image
% FORMAT spm_smooth(P,Q,S,dtype)
% P - image to be smoothed
% Q - filename for smoothed image
% S - [sx sy sz] Gaussian filter width {FWHM} in mm
% dtype - datatype [default: 0 == same datatype as P]
%__________________________________... |
github | lcnhappe/happe-master | spm_smoothto8bit.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_smoothto8bit.m | 2,377 | utf_8 | 89653bff7e0591df6fa676885a830a16 | function VO = spm_smoothto8bit(V,fwhm)
% 3 dimensional convolution of an image to 8bit data in memory
% FORMAT VO = spm_smoothto8bit(V,fwhm)
% V - mapped image to be smoothed
% fwhm - FWHM of Guassian filter width in mm
% VO - smoothed volume in a form that can be used by the
% spm_*_vol.mex* functions.... |
github | lcnhappe/happe-master | spm_platform.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_platform.m | 8,498 | utf_8 | 9af699511e4e0bff6555d7a1e3fe0a23 | function varargout=spm_platform(varargin)
% Platform specific configuration parameters for SPM
%
% FORMAT ans = spm_platform(arg)
% arg - optional string argument, can be
% - 'bigend' - return whether this architecture is bigendian
% - 0 - is little endian
% - 1 - ... |
github | lcnhappe/happe-master | spm_preproc.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_preproc.m | 20,519 | utf_8 | c08f55c5a2eaeb3e30508750d366f52f | function results = spm_preproc(varargin)
% Combined Segmentation and Spatial Normalisation
%
% FORMAT results = spm_preproc(V,opts)
% V - image to work with
% opts - options
% opts.tpm - n tissue probability images for each class
% opts.ngaus - number of Gaussians per class (n+1 classes)
% opts.warpreg ... |
github | lcnhappe/happe-master | spm_preproc_write.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_preproc_write.m | 8,906 | utf_8 | 9312486f72c3a8971ab0c9e847c3a465 | function spm_preproc_write(p,opts)
% Write out VBM preprocessed data
% FORMAT spm_preproc_write(p,opts)
% p - results from spm_prep2sn
% opts - writing options. A struct containing these fields:
% biascor - write bias corrected image
% GM - flags for which images should be written
% WM ... |
github | lcnhappe/happe-master | spm.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm.m | 44,832 | utf_8 | d2d75e50e191a0c29cf483d58a754d7f | function varargout=spm(varargin)
% SPM: Statistical Parametric Mapping (startup function)
%_______________________________________________________________________
% ___ ____ __ __
% / __)( _ \( \/ )
% \__ \ )___/ ) ( Statistical Parametric Mapping
% (___/(__) (_/\/\_) SPM - http://www.fil.ion.ucl.ac.uk/... |
github | lcnhappe/happe-master | spm_orthviews.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_orthviews.m | 77,288 | utf_8 | 8878b323c3d77a20da9a6c983c6cb96a | function varargout = spm_orthviews(action,varargin)
% Display Orthogonal Views of a Normalized Image
% FORMAT H = spm_orthviews('Image',filename[,position])
% filename - name of image to display
% area - position of image
% - area(1) - position x
% - area(2) - position y
% - area... |
github | lcnhappe/happe-master | spm_maff.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_maff.m | 11,287 | utf_8 | 67d7a7a2de40e5f6a1c0c0e5e9f630f3 | function [M,h] = spm_maff(varargin)
% Affine registration to MNI space using mutual information
% FORMAT M = spm_maff(P,samp,x,b0,MF,M,regtyp,ff)
% P - filename or structure handle of image
% x - cell array of {x1,x2,x3}, where x1 and x2 are
% co-ordinates (from ndgrid), and x3 is a list of
% ... |
github | lcnhappe/happe-master | spm_normalise.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_normalise.m | 13,235 | utf_8 | 5dfafbc96b6282a48b19ee3433a77167 | function params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% Spatial (stereotactic) normalization
%
% FORMAT params = spm_normalise(VG,VF,matname,VWG,VWF,flags)
% VG - template handle(s)
% VF - handle of image to estimate params from
% matname - name of file to store deformation definitions
% VWG ... |
github | lcnhappe/happe-master | spm_minmax.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_minmax.m | 3,705 | utf_8 | 58192721e506d5814be863bb8a7e2acf | function [mnv,mxv] = spm_minmax(g)
% Compute a suitable range of intensities for VBM preprocessing stuff
% FORMAT [mnv,mxv] = spm_minmax(g)
% g - array of data
% mnv - minimum value
% mxv - maximum value
%
% A MOG with two Gaussians is fitted to the intensities. The lower
% Gaussian is assumed to represent backgr... |
github | lcnhappe/happe-master | spm_create_vol.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_create_vol.m | 4,914 | utf_8 | 3d1ffa54c52618a0923d6642b8f5e471 | function V = spm_create_vol(V,varargin)
% Create a volume
% FORMAT V = spm_create_vol(V)
% V - image volume information (see spm_vol.m)
%____________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id$
for i=1:numel(V),
... |
github | lcnhappe/happe-master | spm_check_installation.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_check_installation.m | 19,147 | utf_8 | 5500b12cea8521a513b4ff3226dc8f4d | function spm_check_installation(action)
% Check SPM installation
% FORMAT spm_check_installation('basic')
% Perform a superficial check of SPM installation [default].
%
% FORMAT spm_check_installation('full')
% Perform an in-depth diagnostic of SPM installation.
%
% FORMAT spm_check_installation('build')
% Build signat... |
github | lcnhappe/happe-master | spm_prep2sn.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/spm_prep2sn.m | 7,345 | utf_8 | 41b5744c0289cc48a8070de4648e82da | function [po,pin] = spm_prep2sn(p)
% Convert the output from spm_preproc into an sn.mat
% FORMAT [po,pin] = spm_prep2sn(p)
% p - the results of spm_preproc
% po - the output in a form that can be used by
% spm_write_sn.
% pin - the inverse transform in a form that can be
% used by spm_write_sn.
%________... |
github | lcnhappe/happe-master | cfg_getfile.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/matlabbatch/cfg_getfile.m | 46,070 | utf_8 | 3e6a6877315f1b08af13c88de5044295 | function [t,sts] = cfg_getfile(varargin)
% File selector
% FORMAT [t,sts] = cfg_getfile(n,typ,mesg,sel,wd,filt,frames)
% n - Number of files
% A single value or a range. e.g.
% 1 - Select one file
% Inf - Select any number of files
% [1 Inf] - Select 1 to In... |
github | lcnhappe/happe-master | coor2D.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@meeg/coor2D.m | 4,007 | utf_8 | f94070275bb14e35788e110abf929115 | function [res, plotind] = coor2D(this, ind, val, mindist)
% returns x and y coordinates of channels in 2D plane
% FORMAT coor2D(this)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak, Laurence Hunt
% $Id: coor2D.m 43... |
github | lcnhappe/happe-master | cache.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@meeg/cache.m | 754 | utf_8 | 327310c88f9e84a225af302977c46fe6 | function res = cache(this, stuff)
% Method for retrieving/putting stuff from/into the temporary cache
% FORMAT res = cache(obj, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: cache.m 1373 2008-04-11 14:2... |
github | lcnhappe/happe-master | path.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@meeg/path.m | 558 | utf_8 | 7149045fd0a2ac178f0e2dcaf166b5e0 | function res = path(this, name)
% Method for getting/setting path
% FORMAT res = path(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: path.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
case 1... |
github | lcnhappe/happe-master | fname.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@meeg/fname.m | 538 | utf_8 | 00404808a43026efada0ed0cb853d259 | function res = fname(this, name)
% Method for getting/setting file name
% FORMAT res = fname(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fname.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
... |
github | lcnhappe/happe-master | fnamedat.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@meeg/fnamedat.m | 589 | utf_8 | 39857f5d9ecf819f3bc1581bde7009cf | function res = fnamedat(this, name)
% Method for getting/setting file name of data file
% FORMAT res = fnamedat(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fnamedat.m 1373 2008-04-11 14:24:03Z s... |
github | lcnhappe/happe-master | privatepermission.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatepermission.m | 827 | utf_8 | be8d85c3b8ab99ec9cf086139103335f | function varargout = permission(varargin)
% Format
% For getting the value
% dat = permission(obj)
%
% For setting the value
% obj = permission(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
va... |
github | lcnhappe/happe-master | privatescl_slope.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatescl_slope.m | 680 | utf_8 | 4f91ac10412885a1654d520cdaf4c008 | function varargout = scl_slope(varargin)
% Format
% For getting the value
% dat = scl_slope(obj)
%
% For setting the value
% obj = scl_slope(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnhappe/happe-master | subsasgn.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/subsasgn.m | 4,553 | utf_8 | 8649bb5b2b003aef0a04f01504128d47 | function obj = subsasgn(obj,subs,dat)
% Overloaded subsasgn function for file_array objects.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if isempty(subs)
return;
end;
if ~strcmp(subs(1).type,'()'),
if strcmp(su... |
github | lcnhappe/happe-master | privatedim.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatedim.m | 762 | utf_8 | 0ad58f05456fccb279755b25289027c4 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = asgn(vara... |
github | lcnhappe/happe-master | privatescl_inter.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatescl_inter.m | 681 | utf_8 | 341f747372c0465de4be134d3595e133 | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnhappe/happe-master | privatefname.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatefname.m | 648 | utf_8 | 87ba48423085238dda8deb873c3a5a24 | function varargout = fname(varargin)
% Format
% For getting the value
% dat = fname(obj)
%
% For setting the value
% obj = fname(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnhappe/happe-master | privateoffset.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privateoffset.m | 697 | utf_8 | 5b5493cb277651ae207a6e094e50f16f | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} =... |
github | lcnhappe/happe-master | privatedtype.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/privatedtype.m | 2,225 | utf_8 | 4e4a2cfe6a4a9d295f1b9f3eb3fd3eb1 | function varargout = dtype(varargin)
% Format
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnhappe/happe-master | subsref.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/subsref.m | 5,222 | utf_8 | 80f9298dd645012f0fe42fcb32d6beef | function varargout=subsref(obj,subs)
% SUBSREF Subscripted reference
% An overloaded function...
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if isempty(subs), return; end
switch subs(1).type
case '{}'
er... |
github | lcnhappe/happe-master | disp.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/disp.m | 887 | utf_8 | 64720ef6ff6e10ebb67d01f5d3a04f7f | function disp(obj)
% Display a file_array object
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if numel(struct(obj))>1,
fprintf(' %s object: ', class(obj));
sz = size(obj);
if length(sz)>4,
fpri... |
github | lcnhappe/happe-master | offset.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/offset.m | 697 | utf_8 | 5b5493cb277651ae207a6e094e50f16f | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} =... |
github | lcnhappe/happe-master | scl_slope.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/scl_slope.m | 680 | utf_8 | 4f91ac10412885a1654d520cdaf4c008 | function varargout = scl_slope(varargin)
% Format
% For getting the value
% dat = scl_slope(obj)
%
% For setting the value
% obj = scl_slope(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnhappe/happe-master | scl_inter.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/scl_inter.m | 681 | utf_8 | 341f747372c0465de4be134d3595e133 | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
github | lcnhappe/happe-master | fname.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/fname.m | 648 | utf_8 | 87ba48423085238dda8deb873c3a5a24 | function varargout = fname(varargin)
% Format
% For getting the value
% dat = fname(obj)
%
% For setting the value
% obj = fname(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnhappe/happe-master | dim.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/dim.m | 762 | utf_8 | 0ad58f05456fccb279755b25289027c4 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = asgn(vara... |
github | lcnhappe/happe-master | permission.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/permission.m | 827 | utf_8 | be8d85c3b8ab99ec9cf086139103335f | function varargout = permission(varargin)
% Format
% For getting the value
% dat = permission(obj)
%
% For setting the value
% obj = permission(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
va... |
github | lcnhappe/happe-master | dtype.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@file_array/private/dtype.m | 2,225 | utf_8 | 4e4a2cfe6a4a9d295f1b9f3eb3fd3eb1 | function varargout = dtype(varargin)
% Format
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} = as... |
github | lcnhappe/happe-master | subsasgn.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@nifti/subsasgn.m | 14,522 | utf_8 | 86db451a023fd9a4a9252278adcab3ab | function obj = subsasgn(obj,subs,varargin)
% Subscript assignment
% See subsref for meaning of fields.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
switch subs(1).type,
case {'.'},
if numel(obj)~=nargin-2,
e... |
github | lcnhappe/happe-master | subsref.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@nifti/subsref.m | 8,717 | utf_8 | 3e5580b77072a8d2a98deb98231f6bab | function varargout = subsref(opt,subs)
% Subscript referencing
%
% Fields are:
% dat - a file-array representing the image data
% mat0 - a 9-parameter affine transform (from qform0)
% Note that the mapping is from voxels (where the first
% is considered to be at [1,1,1], to m... |
github | lcnhappe/happe-master | create.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@nifti/create.m | 1,922 | utf_8 | 3d0a267602ecbe433be656c175acb2a2 | function create(obj,wrt)
% Create a NIFTI-1 file
% FORMAT create(obj)
% This writes out the header information for the nifti object
%
% create(obj,wrt)
% This also writes out an empty image volume if wrt==1
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Cen... |
github | lcnhappe/happe-master | getdict.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@nifti/private/getdict.m | 5,184 | utf_8 | eebe7d552eb3613897e82d860005c90e | function d = getdict
% Dictionary of NIFTI stuff
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
persistent dict;
if ~isempty(dict),
d = dict;
return;
end;
% Datatype
t = true;
f = false;
table = {...
0 ,'UN... |
github | lcnhappe/happe-master | write_extras.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/spm8/@nifti/private/write_extras.m | 829 | utf_8 | 598b84950ce613b42919ce1f50a59132 | function extras = write_extras(fname,extras)
% Write extra bits of information
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
[pth,nam,ext] = fileparts(fname);
switch ext
case {'.hdr','.img','.nii'}
mname = fullfile(pt... |
github | lcnhappe/happe-master | delete.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/delete.m | 1,189 | utf_8 | 9ca7b2db1b9fc84848585e118ac9d026 | function tree = delete(tree,uid)
% XMLTREE/DELETE Delete (delete a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be deleted
%__________________________________________________________________________
%
% Delete a subtree given its UID
% The tree parameter must be in ... |
github | lcnhappe/happe-master | save.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/save.m | 5,114 | utf_8 | 1c7adbb3f79946f51f25d9031fcb515c | function varargout = save(tree, filename)
% XMLTREE/SAVE Save an XML tree in an XML file
% FORMAT varargout = save(tree,filename)
%
% tree - XMLTree
% filename - XML output filename
% varargout - XML string
%__________________________________________________________________________
%
% Convert an XML tree into a ... |
github | lcnhappe/happe-master | branch.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/branch.m | 1,750 | utf_8 | 407ff520e9de6dc9150a5b4f44d75c90 | function subtree = branch(tree,uid)
% XMLTREE/BRANCH Branch Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the root element of the subtree
% subtree - XMLTree object (a subtree from tree)
%__________________________________________________________________________
%
% Return a su... |
github | lcnhappe/happe-master | flush.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/flush.m | 1,413 | utf_8 | 64502185e2efb9de8f36e36751a39517 | function tree = flush(tree,uid)
% XMLTREE/FLUSH Flush (Clear a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be cleared
% Default is root
%__________________________________________________________________________
%
% Clear a subtree given its UID (remove... |
github | lcnhappe/happe-master | copy.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/copy.m | 1,634 | utf_8 | e6df62a4f41243b78ed8c517b15e493b | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
github | lcnhappe/happe-master | convert.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/convert.m | 5,573 | utf_8 | 05b85174fb85e5d62de81654b76ef7ab | function s = convert(tree,uid)
% XMLTREE/CONVERT Converter an XML tree in a structure
%
% tree - XMLTree object
% uid - uid of the root of the subtree, if provided.
% Default is root
% s - converted structure
%__________________________________________________________________________
%
%... |
github | lcnhappe/happe-master | editor.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/editor.m | 12,418 | utf_8 | 80850644600bde45b47898d068ef0978 | function editor(tree)
%XMLTREE/EDITOR A Graphical User Interface for an XML tree
% EDITOR(TREE) opens a new figure displaying the xmltree object TREE.
% H = EDITOR(TREE) also returns the figure handle H.
%
% This is a beta version of <xmltree/view> successor
%
% See also XMLTREE
%___________________________________... |
github | lcnhappe/happe-master | find.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/find.m | 5,901 | utf_8 | b241bfaac569f137b8b809b7b66765f3 | function list = find(varargin)
% XMLTREE/FIND Find elements in a tree with specified characteristics
% FORMAT list = find(varargin)
%
% tree - XMLTree object
% xpath - string path with specific grammar (XPath)
% uid - lists of root uid's
% parameter/value - pair of pattern
% list - list of uid's of matched elements... |
github | lcnhappe/happe-master | xml_parser.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@xmltree/private/xml_parser.m | 16,192 | utf_8 | 7e44abd21a10863623b455d03e0651bb | function tree = xml_parser(xmlstr)
% XML (eXtensible Markup Language) Processor
% FORMAT tree = xml_parser(xmlstr)
%
% xmlstr - XML string to parse
% tree - tree structure corresponding to the XML file
%__________________________________________________________________________
%
% xml_parser.m is an XML 1.0 (http:/... |
github | lcnhappe/happe-master | save.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@gifti/save.m | 21,043 | utf_8 | 747d3d8c45fa4a27160c0c333450a4dc | function save(this,filename,encoding)
% Save GIfTI object in a GIfTI format file
% FORMAT save(this,filename)
% this - GIfTI object
% filename - name of GIfTI file to be created [Default: 'untitled.gii']
% encoding - optional argument to specify encoding format, among
% ASCII, Base64Binary, GZipBase6... |
github | lcnhappe/happe-master | gifti.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@gifti/gifti.m | 3,728 | utf_8 | 37f5d9e67cb8f5e79f2ac46e1486ffd0 | function this = gifti(varargin)
% GIfTI Geometry file format class
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%_____________________________________________________________... |
github | lcnhappe/happe-master | read_gifti_file.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@gifti/private/read_gifti_file.m | 6,604 | utf_8 | 3e691fdd0839d8cfad3929e4e181a5c1 | function this = read_gifti_file(filename, this)
% Low level reader of GIfTI 1.0 files
% FORMAT this = read_gifti_file(filename, this)
% filename - XML GIfTI filename
% this - structure with fields 'metaData', 'label' and 'data'.
%__________________________________________________________________________
% Cop... |
github | lcnhappe/happe-master | isintent.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/gifti/@gifti/private/isintent.m | 2,477 | utf_8 | 611bd4b3bf09d89f88da3652cc8e6320 | function [a, b] = isintent(this,intent)
% Correspondance between fieldnames and NIfTI intent codes
% FORMAT ind = isintent(this,intent)
% this - GIfTI object
% intent - fieldnames
% a - indices of found intent(s)
% b - indices of dataarrays of found intent(s)
%_______________________________________... |
github | lcnhappe/happe-master | sb_rhs_venant.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/simbio/sb_rhs_venant.m | 1,317 | utf_8 | 2a6743d0e11f6cd5ca8bc3f2a5bab884 | function rhs = sb_rhs_venant(pos,dir,vol);
% SB_RHS_VENANT
%
% $Id$
%find node closest to source position
next_nd = sb_get_next_nd(pos,vol.pos);
%find nodes neighbouring closest node
if isfield(vol,'tet')
ven_nd = sb_get_ven_nd(next_nd,vol.tet);
elseif isfield(vol,'hex')
ven_nd = sb_get_ven_nd(next_nd,vol.hex... |
github | lcnhappe/happe-master | netcdf.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/netcdf/netcdf.m | 5,097 | utf_8 | 3cc73e65d1ed73e0a6836af118228033 | function S = netcdf(File,varargin)
% Function to read NetCDF files
% S = netcdf(File)
% Input Arguments
% File = NetCDF file to read
% Optional Input Arguments:
% 'Var',Var - Read data for VarArray(Var), default [1:length(S.VarArray)]
% 'Rec',Rec - Read data for Record(Rec), default [1:S.NumRecs]
% Output Argum... |
github | lcnhappe/happe-master | writeCPersist.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/writeCPersist.m | 5,086 | utf_8 | 0c56dc571aa56100f050678e5fe815ff | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%% Function writeCPersist %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function writeCPersist(filename,Tag)
% Version 1.2 24 April 2007. Removed terminating null characters from charatcer strings
% ... |
github | lcnhappe/happe-master | getCTFBalanceCoefs.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/getCTFBalanceCoefs.m | 20,490 | utf_8 | 2c434fcbdb53fbc50ee3fbda72e98883 | function [alphaMEG,MEGindex,MEGbalanceindex,alphaGref,Grefindex,Gbalanceindex]=...
getCTFBalanceCoefs(ds,balanceType,unit);
% Reads balance coefficients for SQUID data in phi0's, and converts to coefficients
% for data in physical units.
% Input : ds : (1) ds structure from readCTFds
% balanceType : 'N... |
github | lcnhappe/happe-master | writeCTFds.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/writeCTFds.m | 68,946 | utf_8 | 96615f4833d69490d5b3e47f6f86c538 | function ds=writeCTFds(datasetname,ds,data,unit);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %
% ... |
github | lcnhappe/happe-master | writeRes4.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/writeRes4.m | 8,560 | utf_8 | 416bc2b62624835c63140e54415d2f49 | function res4=writeRes4(res4File,res4,MAX_COILS);
% Write the new .res4 file. Use ieee-be (big endian) format
% Character-string output is done using function writeCTFstring which
% checks that strings are the correct length for the .res4 file format.
% Function calls: - writeCTFstring (included in this listing).... |
github | lcnhappe/happe-master | addCTFtrial.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/addCTFtrial.m | 51,483 | utf_8 | b59730fdb231f07741e7e87dea9e6c1c | function cntrl=addCTFtrial(datasetname,data,unit,mrk,cls,badSegments);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %... |
github | lcnhappe/happe-master | setCTFDataBalance.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/setCTFDataBalance.m | 32,056 | utf_8 | 894c3744554abe635876ce6944dca0cd | function [data,ds]=setCTFDataBalance(data,ds,balance1,unit,chanList,messages);
% Version 1.1 13 April 2007 Mod to chanList: If chanList is omitted and
% size(data,2)<ds.res4.no_channels, then setCTFDataBalance
% sets chanList=1:size(data,2) and prints a war... |
github | lcnhappe/happe-master | writeCTFMRI.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/writeCTFMRI.m | 8,517 | utf_8 | c6bdbc15d67e3621b8109f6b399f5eae | function writeCTFMRI(fileName,MRItags,MRIdata);
% Version 1.2 25 April 2007 Module writeCPersist changed, and removed from this text
% file.
% Version 1.1 19 April 2007 : No changes from v1.0
% Version 1.0 27 Oct. 2006
% Write a CTF MRI in v4 format.
% For file format and a def... |
github | lcnhappe/happe-master | readCTFds.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/ctf/readCTFds.m | 36,570 | utf_8 | e228d972ce0710af61be4d1d0c89f3fe | function ds=readCTFds(datasetname)
% ************************************************************************
%
% This program is provided to users of CTF MEG systems as a courtesy only.
% It's operation has not been verified for clinical use.
% Please do not redistribute it without permission from CTF Systems I... |
github | lcnhappe/happe-master | sqddemo.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/sqddemo.m | 13,633 | utf_8 | 3e91690d3d302c08b018202387b55f3c | function sqddemo(action)
% SQDDEMO; Provides a interactive demo explaining the use of sqdread and
% sqdwrite functions
persistent Newline;
persistent Running;
persistent Decoration;
if ~nargin
action = 'start';
end;
switch lower(action)
case 'init'
Newline = sprintf('\n');
Running = uicontinue(... |
github | lcnhappe/happe-master | get.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/@chanhandle/get.m | 6,405 | utf_8 | 72519eea5ca24f660f7729d2725a9efb | function out = get(t,varargin)
% GET Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-N or... |
github | lcnhappe/happe-master | chanhandle.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/@chanhandle/chanhandle.m | 3,739 | utf_8 | d43b79acd008d1094f4aabd77746e71b | function t = chanhandle(varargin)
% T = CHANHANDLE; Constructor for class CHANHANDLE
% Chanhandle class contains channel-specific information only.
% An object belonging to chanhandle has the following properties:
% ChannelNumber
% Sensitivity
% SensorInfo
% Usage:
% t = chanhandle; Default values
% t = chanhan... |
github | lcnhappe/happe-master | get.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/@sqdhandle/get.m | 3,777 | utf_8 | ee256890517a8c295444d2cc58ed54cd | function out = get(t,prop)
% GET Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-N or N-b... |
github | lcnhappe/happe-master | putdata.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/@sqdhandle/putdata.m | 10,726 | utf_8 | 59ea137b693298211a264bf05305767f | function err = putdata(t,filename,varargin)
% ERR = PUTDATA(SQDHANDLE,FILENAME,'DATA',channeldata);
% Writes new Channel Data to .sqd file given by 'filename'. The template
% (Acquisition and Setup Information) is chosen from SQDHANDLE. It assumes
% that the channeldata is in a format (shown below) and appropriately ... |
github | lcnhappe/happe-master | get.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/external/sqdproject/@acqparam/get.m | 3,525 | utf_8 | c36be430c00919d46ee5184a3794613e | function out = get(t,prop)
% GET(T,PROP) Get object properties.
% out = GET(t,'PropertyName') returns the value of the specified
% property for the object t. If t is a vector of handles, then
% get will return an M-by-1 cell array of values where M is equal
% to length(t). If 'PropertyName' is replaced by a 1-by-... |
github | lcnhappe/happe-master | nansum.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/src/nansum.m | 194 | utf_8 | d26aaa8d5695a2cd15c51e72c3d4a186 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
x(isnan(x)) = 0;
if nargin==1
y = sum(x);
else
y = sum(x,dim);
end
end % function
|
github | lcnhappe/happe-master | nanstd.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/src/nanstd.m | 248 | utf_8 | fa0dc38960ab4c502a685ee11ebb3328 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
end % function
|
github | lcnhappe/happe-master | nanmean.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/src/nanmean.m | 245 | utf_8 | 8ab56ab826c1e69fd89a8937baae4bf0 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
if nargin<2
N = sum(~isnan(x));
y = nansum(x) ./ N;
else
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
end % function
|
github | lcnhappe/happe-master | ft_connectivity_corr.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/connectivity/ft_connectivity_corr.m | 8,589 | utf_8 | 65aed98bf500c7a9cfb427092834352e | function [c, v, outcnt] = ft_connectivity_corr(input, varargin)
% FT_CONNECTIVITY_CORR computes correlation, coherence or a related
% quantity from a data-matrix containing a covariance or cross-spectral
% density.
%
% Use as
% [c, v, n] = ft_connectivity_corr(input, varargin)
%
% The input data input should be an a... |
github | lcnhappe/happe-master | ft_connectivity_psi.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/connectivity/ft_connectivity_psi.m | 5,649 | utf_8 | db9ca445aeb3e9dc93fc82e65fdc4335 | function [c, v, n] = ft_connectivity_psi(input, varargin)
% FT_CONNECTIVITY_PSI computes the phase slope index from a data-matrix
% containing the cross-spectral density. It implements the method described
% in: Nolte et al., Robustly estimating the flow direction of information
% in complex physical systems. Physical... |
github | lcnhappe/happe-master | sfactorization_wilson2x2.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/connectivity/private/sfactorization_wilson2x2.m | 8,406 | utf_8 | 73bfa40093aff0fb82e9ca232813340b | function [H, Z, S, psi] = sfactorization_wilson2x2(S,freq,Niterations,tol,cmbindx,fb,init,checkflag)
% SFACTORIZATION_WILSON2X2 performs pairwise non-parametric spectral factorization on
% cross-spectra, based on Wilson's algorithm.
%
% Usage : [H, Z, psi] = sfactorization_wilson(S,freq);
%
% Inputs : S (1-sided, 3D-... |
github | lcnhappe/happe-master | ft_warning.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/connectivity/private/ft_warning.m | 7,789 | utf_8 | d832a7ad5e2f9bb42995e6e5d4caa198 | function [ws, warned] = ft_warning(varargin)
% FT_WARNING will throw a warning for every unique point in the
% stacktrace only, e.g. in a for-loop a warning is thrown only once.
%
% Use as one of the following
% ft_warning(string)
% ft_warning(id, string)
% Alternatively, you can use ft_warning using a timeout
% ... |
github | lcnhappe/happe-master | sfactorization_wilson.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/connectivity/private/sfactorization_wilson.m | 7,826 | utf_8 | 42fad4dc181f918d0eae9b4b4158dec0 | function [H, Z, S, psi] = sfactorization_wilson(S,freq,Niterations,tol,fb,init,checkflag)
% SFACTORIZATION_WILSON performs multivariate non-parametric spectral factorization on
% cross-spectra, based on Wilson's algorithm.
%
% Usage : [H, Z, S, psi] = sfactorization_wilson(S,freq);
%
% Inputs : S (1-sided, 3D-spectra... |
github | lcnhappe/happe-master | test_corrupt_matfiles.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_corrupt_matfiles.m | 977 | utf_8 | 5ab1651a584ef5f3c5112d046bde5d58 | function test_corrupt_matfiles
% MEM 8gb
% WALLTIME 10:00:00
files = findfiles('/home/common/matlab/fieldtrip/data/test');
status = true(size(files));
for i=1:length(files)
try
tmp = load(files{i});
clear tmp
fprintf('passed reading %s\n', files{i});
catch
status(i) = false;
warning('failed r... |
github | lcnhappe/happe-master | test_tutorial_eventrelatedstatistics.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_tutorial_eventrelatedstatistics.m | 9,523 | utf_8 | 2cf8fa1f8ee413ae513bff8697d5f5e7 | function test_tutorial_eventrelatedstatistics(datadir)
% MEM 2500mb
% WALLTIME 00:20:00
% TEST test_tutorial_eventrelatedstatistics
% TEST ft_timelockanalysis ft_multiplotER ft_singleplotER ft_timelockstatistics
% TEST ft_topoplotER ft_clusterplot
global ft_default;
ft_default.feedback = 'no';
if nargin==0
if isp... |
github | lcnhappe/happe-master | test_old_ft_freqanalysis.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_old_ft_freqanalysis.m | 4,746 | utf_8 | 6af1e431442a1ca536fdb9f401782c5c | function test_old_ft_freqanalysis
% MEM 1gb
% WALLTIME 00:10:00
% TEST test_old_ft_freqanalysis
function test_ft_freqanalysis
% TEST_FT_FREQANALYSIS
% This script tests the ft_freqanalysis functions using simulated data
% A. Stolk and J.M. Schoffelen
% simulate one second of data, samplefreq = 1200 hz
t = (1:1200)/... |
github | lcnhappe/happe-master | test_bug1306.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_bug1306.m | 3,242 | utf_8 | 6eafe5e96456aef8810d60524f895038 | function test_bug1306b
% MEM 1500mb
% WALLTIME 00:10:00
% Use function signature below for testing --- note that xUnit does not seem to support it.
%function datanew = test_ft_preprocessing(datainfo, writeflag, version)
% TEST test_ft_preprocessing
% TEST ft_preprocessing ref_datasets
% writeflag determines whether... |
github | lcnhappe/happe-master | test_bug1988.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_bug1988.m | 3,484 | utf_8 | 843427441883f86575969f343d6b7737 | function test_bug1988
% MEM 3gb
% WALLTIME 00:45:00
% TEST test_bug1988 ft_volumesegment ft_prepare_headmodel
%% segmentedmri.mat
% from current version may not match what is on the ftp for tutorials
% as it's called in the BF tutorial
mri = ft_read_mri('/home/common/matlab/fieldtrip/data/ftp/tutorial/beamformer/Su... |
github | lcnhappe/happe-master | test_ft_sourceanalysis.m | .m | happe-master/Packages/eeglab14_0_0b/plugins/fieldtrip-20160917/test/test_ft_sourceanalysis.m | 84,994 | utf_8 | 8dd6e4bc89de5f6d19e62984a36b9342 | function [varargout] = test_ft_sourceanalysis(datainfo, writeflag, version, diagnosticsflag)
% MEM 4gb
% WALLTIME 04:30:00
% TEST test_ft_sourceanalysis
% TEST ft_sourceanalysis ref_datasets
% writeflag determines whether the output should be saved to disk
% version determines the output directory
% diagnosticsflag... |
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