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value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | philippboehmsturm/antx-master | xml2struct.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/xml2struct.m | 8,612 | utf_8 | 3d883353ccb551f2dcd554835610a565 | function [ s ] = xml2struct( file )
%Convert xml file into a MATLAB structure
% [ s ] = xml2struct( file )
%
% A file containing:
% <XMLname attrib1="Some value">
% <Element>Some text</Element>
% <DifferentElement attrib2="2">Some more text</DifferentElement>
% <DifferentElement attrib3="2" attrib4="1">Even more ... |
github | philippboehmsturm/antx-master | nanstd.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/nanstd.m | 231 | utf_8 | 0ff62b1c345b5ad76a9af59cf07c2983 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
|
github | philippboehmsturm/antx-master | read_eeglabdata.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_eeglabdata.m | 3,193 | utf_8 | 33c4ab48f49c3929347fee8295589fbc | % read_eeglabdata() - import EEGLAB dataset files
%
% Usage:
% >> dat = read_eeglabdata(filename);
%
% Inputs:
% filename - [string] file name
%
% Optional inputs:
% 'begtrial' - [integer] first trial to read
% 'endtrial' - [integer] last trial to read
% 'chanindx' - [integer] list with channel indices to ... |
github | philippboehmsturm/antx-master | readbdf.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/readbdf.m | 3,632 | utf_8 | 9c94d90dc0c8728b0b46e5276747e847 | % readbdf() - Loads selected Records of an EDF or BDF File (European Data Format
% for Biosignals) into MATLAB
% Usage:
% >> [DAT,signal] = readedf(EDF_Struct,Records,Mode);
% Notes:
% Records - List of Records for Loading
% Mode - 0 Default
% 1 ... |
github | philippboehmsturm/antx-master | warning_once.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/warning_once.m | 3,832 | utf_8 | 07dc728273934663973f4c716e7a3a1c | function [ws warned] = warning_once(varargin)
%
% Use as one of the following
% warning_once(string)
% warning_once(string, timeout)
% warning_once(id, string)
% warning_once(id, string, timeout)
% where timeout should be inf if you don't want to see the warning ever
% again. The default timeout value is 60 sec... |
github | philippboehmsturm/antx-master | ft_hastoolbox.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/ft_hastoolbox.m | 21,701 | utf_8 | 7141791b922e3b46334b4d5888532adf | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | philippboehmsturm/antx-master | read_yokogawa_data_new.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_yokogawa_data_new.m | 5,691 | utf_8 | 0f379a92d07b29f6a231c357f4f02920 | function [dat] = read_yokogawa_data_new(filename, hdr, begsample, endsample, chanindx)
% READ_YOKAGAWA_DATA_NEW reads continuous, epoched or averaged MEG data
% that has been generated by the Yokogawa MEG system and software
% and allows that data to be used in combination with FieldTrip.
%
% Use as
% [dat] = read_y... |
github | philippboehmsturm/antx-master | read_plexon_nex.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_plexon_nex.m | 7,633 | utf_8 | 64b3b2124d2af848afb0d1746f422818 | function [varargout] = read_plexon_nex(filename, varargin)
% READ_PLEXON_NEX reads header or data from a Plexon *.nex file, which
% is a file containing action-potential (spike) timestamps and waveforms
% (spike channels), event timestamps (event channels), and continuous
% variable data (continuous A/D channels).
%
%... |
github | philippboehmsturm/antx-master | read_bti_m4d.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_bti_m4d.m | 5,505 | utf_8 | 1c319e059794d81ea2fe302a09a2ba73 | function [msi] = read_bti_m4d(filename)
% READ_BTI_M4D
%
% Use as
% msi = read_bti_m4d(filename)
% Copyright (C) 2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documentation and details.
%
% FieldTrip is free software: you can redistribute it and... |
github | philippboehmsturm/antx-master | read_asa.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_asa.m | 3,857 | utf_8 | bd6525da96c296723f6a29b027b2445e | function [val] = read_asa(filename, elem, format, number, token)
% READ_ASA reads a specified element from an ASA file
%
% val = read_asa(filename, element, type, number)
%
% where the element is a string such as
% NumberSlices
% NumberPositions
% Rows
% Columns
% etc.
%
% and format specifies the datatype a... |
github | philippboehmsturm/antx-master | nanmean.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/nanmean.m | 165 | utf_8 | e6c473a49d8be6e12960af55ced45e54 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
|
github | philippboehmsturm/antx-master | ft_checkdata.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/ft_checkdata.m | 68,446 | utf_8 | 826e5a3878076ce68bb166d5afbfe9fd | function [data] = ft_checkdata(data, varargin)
% FT_CHECKDATA checks the input data of the main FieldTrip functions, e.g. whether
% the type of data strucure corresponds with the required data. If neccessary
% and possible, this function will adjust the data structure to the input
% requirements (e.g. change dimord, a... |
github | philippboehmsturm/antx-master | nanvar.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/nanvar.m | 1,093 | utf_8 | d9641af3bba1e2c6e3512199221e686c | % NANVAR provides a replacement for MATLAB's nanvar that is almost
% compatible.
%
% For usage see VAR. Note that the weight-vector is not supported. If you
% need it, please file a ticket at our bugtracker.
function Y = nanvar(X, w, dim)
switch nargin
case 1
% VAR(x)
% Normalize by n-1 when no dim is given... |
github | philippboehmsturm/antx-master | read_yokogawa_data.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_yokogawa_data.m | 11,038 | utf_8 | aa2c8a06c417ada7e9af353f2307443e | function [dat] = read_yokogawa_data(filename, hdr, begsample, endsample, chanindx)
% READ_YOKAGAWA_DATA reads continuous, epoched or averaged MEG data
% that has been generated by the Yokogawa MEG system and software
% and allows that data to be used in combination with FieldTrip.
%
% Use as
% [dat] = read_yokogawa_... |
github | philippboehmsturm/antx-master | read_biff.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_biff.m | 5,857 | utf_8 | d71281c0e6be7868430597d71c166b5d | function [this] = read_biff(filename, opt)
% READ_BIFF reads data and header information from a BIFF file
%
% This is a attemt for a reference implementation to read the BIFF
% file format as defined by the Clinical Neurophysiology department of
% the University Medical Centre, Nijmegen.
%
% read all data and inform... |
github | philippboehmsturm/antx-master | read_eeglabheader.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_eeglabheader.m | 2,255 | utf_8 | fe4446f32b250441d57acff9ebe691a2 | % read_eeglabheader() - import EEGLAB dataset files
%
% Usage:
% >> header = read_eeglabheader(filename);
%
% Inputs:
% filename - [string] file name
%
% Outputs:
% header - FILEIO toolbox type structure
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, 2008-
%1234567890123456789012345678901234567890123456789012345... |
github | philippboehmsturm/antx-master | read_ctf_svl.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_ctf_svl.m | 3,812 | utf_8 | d3442d0a013cf5e0a8d4277d99e45206 | % [data, hdr] = opensvl(filename)
%
% Reads a CTF SAM (.svl) file.
function [data, hdr] = read_ctf_svl(filename)
fid = fopen(filename, 'rb', 'ieee-be', 'ISO-8859-1');
if fid <= 0
error('Could not open SAM file: %s\n', filename);
end
% --------------------------------------------------------------... |
github | philippboehmsturm/antx-master | read_erplabevent.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_erplabevent.m | 1,786 | utf_8 | 40ece49ff6bd2afd6024b46f210e65fa | % read_erplabevent() - import ERPLAB dataset events
%
% Usage:
% >> event = read_erplabevent(filename, ...);
%
% Inputs:
% filename - [string] file name
%
% Optional inputs:
% 'header' - FILEIO structure header
%
% Outputs:
% event - FILEIO toolbox event structure
%
% Modified from read_eeglabevent
%12... |
github | philippboehmsturm/antx-master | read_yokogawa_header_new.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_yokogawa_header_new.m | 8,959 | utf_8 | 654f373c60405e9a27c40d65ab0147dd | function hdr = read_yokogawa_header_new(filename)
% READ_YOKOGAWA_HEADER_NEW reads the header information from continuous,
% epoched or averaged MEG data that has been generated by the Yokogawa
% MEG system and software and allows that data to be used in combination
% with FieldTrip.
%
% Use as
% [hdr] = read_yokoga... |
github | philippboehmsturm/antx-master | ft_datatype_raw.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/ft_datatype_raw.m | 10,365 | utf_8 | 8e666a629bcfec8802a49fc7d1eb4d8c | function data = ft_datatype_raw(data, varargin)
% FT_DATATYPE_RAW describes the FieldTrip MATLAB structure for raw data
%
% The raw datatype represents sensor-level time-domain data typically
% obtained after calling FT_DEFINETRIAL and FT_PREPROCESSING. It contains
% one or multiple segments of data, each represented ... |
github | philippboehmsturm/antx-master | loadcnt.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/loadcnt.m | 23,166 | utf_8 | 3629cdf2a890ef76f423f15fff965b3a | % loadcnt() - Load a Neuroscan continuous signal file.
%
% Usage:
% >> cnt = loadcnt(file, varargin)
%
% Inputs:
% filename - name of the file with extension
%
% Optional inputs:
% 't1' - start at time t1, default 0. Warning, events latency
% might be innacurate (this is an open issue).
% ... |
github | philippboehmsturm/antx-master | read_yokogawa_header.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_yokogawa_header.m | 8,340 | utf_8 | c1392a52ad7bb86127e7a704c5abce9d | function hdr = read_yokogawa_header(filename)
% READ_YOKOGAWA_HEADER reads the header information from continuous,
% epoched or averaged MEG data that has been generated by the Yokogawa
% MEG system and software and allows that data to be used in combination
% with FieldTrip.
%
% Use as
% [hdr] = read_yokogawa_heade... |
github | philippboehmsturm/antx-master | encode_nifti1.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/encode_nifti1.m | 4,870 | utf_8 | 9cf92a03587c511a5cec2c8c76a3c2c3 | function blob = encode_nifti1(H)
%function blob = encode_nifti1(H)
%
% Encodes a NIFTI-1 header (=> raw 348 bytes (uint8)) from a Matlab structure
% that matches the C struct defined in nifti1.h.
%
% WARNING: This function currently ignores endianness !!!
% (C) 2010 S.Klanke
blob = uint8(zeros(1,348));
if ~isstruct(... |
github | philippboehmsturm/antx-master | avw_hdr_read.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/avw_hdr_read.m | 16,668 | utf_8 | 7cb599cd5b75177fed96189188822304 | function [ avw, machine ] = avw_hdr_read(fileprefix, machine, verbose)
% avw_hdr_read - read Analyze format data header (*.hdr)
%
% [ avw, machine ] = avw_hdr_read(fileprefix, [machine], [verbose])
%
% fileprefix - string filename (without .hdr); the file name
% can be given as a full path or relative to ... |
github | philippboehmsturm/antx-master | read_stl.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_stl.m | 4,072 | utf_8 | f8ab163555c079a78445be6bc53cac39 | function [pnt, tri, nrm] = read_stl(filename);
% READ_STL reads a triangulation from an ascii or binary *.stl file, which
% is a file format native to the stereolithography CAD software created by
% 3D Systems.
%
% Use as
% [pnt, tri, nrm] = read_stl(filename)
%
% The format is described at http://en.wikipedia.org/w... |
github | philippboehmsturm/antx-master | read_itab_mhd.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_itab_mhd.m | 12,499 | utf_8 | 3f00166bb7197b9d65c619cfe0ac954d | function mhd = read_itab_mhd(filename)
fid = fopen(filename, 'rb');
% Name of structure
mhd.stname = fread(fid, [1 10], 'uint8=>char'); % Header identifier (VP_BIOMAG)
mhd.stver = fread(fid, [1 8], 'uint8=>char'); % Header version
mhd.stendian = fread(fid, [1 4], 'uint8=>char'); % ... |
github | philippboehmsturm/antx-master | read_plexon_plx.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_plexon_plx.m | 19,936 | utf_8 | a5f213ea449dd4e5bb51d240302e6364 | function [varargout] = read_plexon_plx(filename, varargin)
% READ_PLEXON_PLX reads header or data from a Plexon *.plx file, which
% is a file containing action-potential (spike) timestamps and waveforms
% (spike channels), event timestamps (event channels), and continuous
% variable data (continuous A/D channels).
%
%... |
github | philippboehmsturm/antx-master | read_neurosim_evolution.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_neurosim_evolution.m | 4,562 | utf_8 | fef2b6110659fbc86ec755b093316cc2 | function [hdr, dat] = read_neurosim_evolution(filename, varargin)
% READ_NEUROSIM_EVOLUTION reads the "evolution" file that is written
% by Jan van der Eerden's NeuroSim software. When a directory is used
% as input, the default filename 'evolution' is read.
%
% Use as
% [hdr, dat] = read_neurosim_evolution(filename... |
github | philippboehmsturm/antx-master | read_eeglabevent.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_eeglabevent.m | 4,191 | utf_8 | 67bd5db5f42d6abb30df32d9db8277eb | % read_eeglabevent() - import EEGLAB dataset events
%
% Usage:
% >> event = read_eeglabevent(filename, ...);
%
% Inputs:
% filename - [string] file name
%
% Optional inputs:
% 'header' - FILEIO structure header
%
% Outputs:
% event - FILEIO toolbox event structure
%
% Author: Arnaud Delorme, SCCN, INC, ... |
github | philippboehmsturm/antx-master | read_bti_ascii.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/read_bti_ascii.m | 2,301 | utf_8 | 1a848485b63c5722f7013276c80d4dab | function [file] = read_bti_ascii(filename);
% READ_BTI_ASCII reads general data from a BTI configuration file
%
% The file should be formatted like
% Group:
% item1 : value1a value1b value1c
% item2 : value2a value2b value2c
% item3 : value3a value3b value3c
% item4 : value4a value4b value4c... |
github | philippboehmsturm/antx-master | openbdf.m | .m | antx-master/xspm8/external/fieldtrip/fileio/private/openbdf.m | 6,812 | utf_8 | cb49358a2a955b165a5c50127c25e3d8 | % openbdf() - Opens an BDF File (European Data Format for Biosignals) in MATLAB (R)
%
% Usage:
% >> EDF=openedf(FILENAME)
%
% Note: About EDF -> www.biosemi.com/faq/file_format.htm
%
% Author: Alois Schloegl, 5.Nov.1998
%
% See also: readedf()
% Copyright (C) 1997-1998 by Alois Schloegl
% a.schloegl@ieee.org
% ... |
github | philippboehmsturm/antx-master | ft_trialfun_general.m | .m | antx-master/xspm8/external/fieldtrip/trialfun/ft_trialfun_general.m | 13,271 | utf_8 | 0cfa2157a643d65e98d581477165b7b5 | function [trl, event] = ft_trialfun_general(cfg)
% FT_TRIALFUN_GENERAL determines trials/segments in the data that are
% interesting for analysis, using the general event structure returned
% by read_event. This function is independent of the dataformat
%
% The trialdef structure can contain the following specificatio... |
github | philippboehmsturm/antx-master | ft_trialfun_realtime.m | .m | antx-master/xspm8/external/fieldtrip/trialfun/ft_trialfun_realtime.m | 4,591 | utf_8 | 643acf8caae74037ece5c0f0d5ca7057 | function trl = ft_trialfun_realtime(cfg)
% FT_TRIALFUN_REALTIME can be used to segment a continuous stream of
% data in real-time. Trials are defined as [begsample endsample offset
% condition]
%
% The configuration structure can contain the following specifications
% cfg.minsample = the last sample number that wa... |
github | philippboehmsturm/antx-master | select_channel_list.m | .m | antx-master/xspm8/external/fieldtrip/trialfun/private/select_channel_list.m | 5,910 | utf_8 | 51149b83e6eca7c0510e5a740c7f87e7 | function [select] = select_channel_list(label, select, titlestr);
% SELECT_CHANNEL_LIST presents a dialog for selecting multiple elements
% from a cell array with strings, such as the labels of EEG channels.
% The dialog presents two columns with an add and remove mechanism.
%
% select = select_channel_list(label, in... |
github | philippboehmsturm/antx-master | ft_headmodel_fns.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_headmodel_fns.m | 5,731 | utf_8 | 2a5fde79978f74623faf81f8d9fa4af7 | function vol = ft_headmodel_fns(seg, varargin)
% FT_HEADMODEL_FNS creates the volume conduction structure to be used
% in the FNS forward solver.
%
% Use as
% vol = ft_headmodel_fns(seg, ...)
%
% Optional input arguments should be specified in key-value pairs and
% can include
% tissuecond = matrix C [9XN t... |
github | philippboehmsturm/antx-master | ft_convert_units.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_convert_units.m | 7,014 | utf_8 | bd2c535cfe17e9623a258e0cabe01226 | function [obj] = ft_convert_units(obj, target)
% FT_CONVERT_UNITS changes the geometrical dimension to the specified SI unit.
% The units of the input object is determined from the structure field
% object.unit, or is estimated based on the spatial extend of the structure,
% e.g. a volume conduction model of the head ... |
github | philippboehmsturm/antx-master | ft_apply_montage.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_apply_montage.m | 13,440 | utf_8 | ba256ae86f2bc28cc2d9f26098e25236 | function [input] = ft_apply_montage(input, montage, varargin)
% FT_APPLY_MONTAGE changes the montage of an electrode or gradiometer array. A
% montage can be used for EEG rereferencing, MEG synthetic gradients, MEG
% planar gradients or unmixing using ICA. This function applies the montage
% to the inputor array. The ... |
github | philippboehmsturm/antx-master | ft_headmodel_slab.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_headmodel_slab.m | 3,466 | utf_8 | 757f6a05af6be4410be4b60f68219358 | function vol = ft_headmodel_slab(geom1, geom2, Pc, varargin)
% FT_HEADMODEL_SLAB creates an EEG volume conduction model that
% is described with an infinite conductive slab. You can think
% of this as two parallel planes containing a mass of conductive
% material (e.g. water) and externally to them a non-conductive ma... |
github | philippboehmsturm/antx-master | ft_prepare_vol_sens.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_prepare_vol_sens.m | 23,785 | utf_8 | 48ad68a40571bf206b4973418d72acab | function [vol, sens] = ft_prepare_vol_sens(vol, sens, varargin)
% FT_PREPARE_VOL_SENS does some bookkeeping to ensure that the volume
% conductor model and the sensor array are ready for subsequent forward
% leadfield computations. It takes care of some pre-computations that can
% be done efficiently prior to the lead... |
github | philippboehmsturm/antx-master | ft_headmodel_halfspace.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_headmodel_halfspace.m | 3,240 | utf_8 | d78abbad6c8d161643451f71b14c2877 | function vol = ft_headmodel_halfspace(geom, Pc, varargin)
% FT_HEADMODEL_HALFSPACE creates an EEG volume conduction model that
% is described with an infinite conductive halfspace. You can think
% of this as a plane with on one side a infinite mass of conductive
% material (e.g. water) and on the other side non-conduc... |
github | philippboehmsturm/antx-master | ft_headmodel_dipoli.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_headmodel_dipoli.m | 6,816 | utf_8 | 3465b5ee40c407eb1d5678ae6507e8f3 | function vol = ft_headmodel_dipoli(geom, varargin)
% FT_HEADMODEL_DIPOLI creates a volume conduction model of the head
% using the boundary element method (BEM) for EEG. This function takes
% as input the triangulated surfaces that describe the boundaries and
% returns as output a volume conduction model which can be ... |
github | philippboehmsturm/antx-master | ft_headmodel_openmeeg.m | .m | antx-master/xspm8/external/fieldtrip/forward/ft_headmodel_openmeeg.m | 7,299 | utf_8 | 471a50b0b7a3a9726773a1f15bcfa4f3 | function vol = ft_headmodel_openmeeg(geom, varargin)
% FT_HEADMODEL_OPENMEEG creates a volume conduction model of the
% head using the boundary element method (BEM). This function takes
% as input the triangulated surfaces that describe the boundaries and
% returns as output a volume conduction model which can be used... |
github | philippboehmsturm/antx-master | ft_datatype_sens.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/ft_datatype_sens.m | 8,876 | utf_8 | 9cca02c1384fde3f0c40f1a5a3a0253a | function [sens] = ft_datatype_sens(sens, varargin)
% FT_DATATYPE_SENS describes the FieldTrip structure that represents
% an EEG, ECoG, or MEG sensor array. This structure is commonly called
% "elec" for EEG and "grad" for MEG, or more general "sens" for either
% one.
%
% The structure for MEG gradiometers and/or magn... |
github | philippboehmsturm/antx-master | normals.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/normals.m | 2,582 | utf_8 | c474f14b83010d46459376013fa6e047 | function [nrm] = normals(pnt, dhk, opt);
% NORMALS compute the surface normals of a triangular mesh
% for each triangle or for each vertex
%
% [nrm] = normals(pnt, dhk, opt)
% where opt is either 'vertex' or 'triangle'
% Copyright (C) 2002-2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.... |
github | philippboehmsturm/antx-master | meg_ini.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/meg_ini.m | 5,605 | utf_8 | ebfaeafe751fd7aea7baf1049e6865b4 | function forwpar=meg_ini(vc,center,order,sens,refs,gradlocs,weights)
% initializes MEG-forward calculation
% usage: forwpar=meg_ini(vc,center,order,sens,refs,gradlocs,weights);
%
% input:
% vc: Nx6 matrix; N is the number of surface points
% the first three numbers in each row are the location
% and the... |
github | philippboehmsturm/antx-master | eeg_halfspace_monopole.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/eeg_halfspace_monopole.m | 3,531 | utf_8 | a30cd5fd8a55c538ea729282dd92336a | function [lf] = eeg_halfspace_monopole(rd, elc, vol)
% EEG_HALFSPACE_MONOPOLE calculate the halfspace medium leadfield
% on positions pnt for a monopole at position rd and conductivity cond
% The halfspace solution requires a plane dividing a conductive zone of
% conductivity cond, from a non coductive zone (cond = 0)... |
github | philippboehmsturm/antx-master | eeg_halfspace_medium_leadfield.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/eeg_halfspace_medium_leadfield.m | 3,539 | utf_8 | 1e8b5e9c0f452dc034f74f1a4035efd7 | function [lf] = eeg_halfspace_medium_leadfield(rd, elc, vol)
% HALFSPACE_MEDIUM_LEADFIELD calculate the halfspace medium leadfield
% on positions pnt for a dipole at position rd and conductivity cond
% The halfspace solution requires a plane dividing a conductive zone of
% conductivity cond, from a non coductive zone ... |
github | philippboehmsturm/antx-master | warning_once.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/warning_once.m | 3,832 | utf_8 | 07dc728273934663973f4c716e7a3a1c | function [ws warned] = warning_once(varargin)
%
% Use as one of the following
% warning_once(string)
% warning_once(string, timeout)
% warning_once(id, string)
% warning_once(id, string, timeout)
% where timeout should be inf if you don't want to see the warning ever
% again. The default timeout value is 60 sec... |
github | philippboehmsturm/antx-master | leadsphere_all.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/leadsphere_all.m | 2,351 | utf_8 | 8a0c7658993d13ebbeafaa335b06386a | function out=leadsphere_chans(xloc,sensorloc,sensorori)
% usage: out=leadsphere_chans(xloc,sensorloc,sensorori)
% Copyright (C) 2003, Guido Nolte
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documentation and details.
%
% FieldTrip is free software: you can redistribute ... |
github | philippboehmsturm/antx-master | ft_hastoolbox.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/ft_hastoolbox.m | 21,701 | utf_8 | 7141791b922e3b46334b4d5888532adf | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | philippboehmsturm/antx-master | eeg_slab_monopole.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/eeg_slab_monopole.m | 4,438 | utf_8 | a73da4acab82be2e433ef6b96c5da222 | function [lf] = eeg_slab_monopole(rd, elc, vol)
% EEG_SLAB_MONOPOLE calculate the strip medium leadfield
% on positions pnt for a monopole at position rd and conductivity cond
% The halfspace solution requires a plane dividing a conductive zone of
% conductivity cond, from a non coductive zone (cond = 0)
%
% [l... |
github | philippboehmsturm/antx-master | eeg_leadfield1.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/eeg_leadfield1.m | 3,851 | utf_8 | 5b4189b3e0cfc474f626b46f8d47b752 | function lf = eeg_leadfield1(R, elc, vol)
% EEG_LEADFIELD1 electric leadfield for a dipole in a single sphere
%
% [lf] = eeg_leadfield1(R, elc, vol)
%
% with input arguments
% R position dipole (vector of length 3)
% elc position electrodes
% and vol being a structure with the elements
% vol.r radius... |
github | philippboehmsturm/antx-master | meg_forward.m | .m | antx-master/xspm8/external/fieldtrip/forward/private/meg_forward.m | 4,038 | utf_8 | ac153d74863728e2e7c2eb70a19bf210 | function field=meg_forward(dip_par,forwpar)
% calculates the magnetic field of n dipoles
% in a realistic volume conductor
% usage: field=meg_forward(dip_par,forwpar)
%
% input:
% dip_par nx6 matrix where each row contains location (first 3 numbers)
% and moment (second 3 numbers) of a dipole
% forwpar st... |
github | philippboehmsturm/antx-master | postpad.m | .m | antx-master/xspm8/external/fieldtrip/preproc/private/postpad.m | 2,013 | utf_8 | 2c9539d77ff0f85c9f89108f4dc811e0 | % Copyright (C) 1994, 1995, 1996, 1997, 1998, 2000, 2002, 2004, 2005,
% 2006, 2007, 2008, 2009 John W. Eaton
%
% This file is part of Octave.
%
% Octave is free software; you can redistribute it and/or modify it
% under the terms of the GNU General Public License as published by
% the Free Software Founda... |
github | philippboehmsturm/antx-master | sftrans.m | .m | antx-master/xspm8/external/fieldtrip/preproc/private/sftrans.m | 7,947 | utf_8 | f64cb2e7d19bcdc6232b39d8a6d70e7c | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | philippboehmsturm/antx-master | filtfilt.m | .m | antx-master/xspm8/external/fieldtrip/preproc/private/filtfilt.m | 3,297 | iso_8859_1 | d01a26a827bc3379f05bbc57f46ac0a9 | % Copyright (C) 1999 Paul Kienzle
% Copyright (C) 2007 Francesco Potortì
% Copyright (C) 2008 Luca Citi
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (a... |
github | philippboehmsturm/antx-master | bilinear.m | .m | antx-master/xspm8/external/fieldtrip/preproc/private/bilinear.m | 4,339 | utf_8 | 17250db27826cad87fa3384823e1242f | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | philippboehmsturm/antx-master | butter.m | .m | antx-master/xspm8/external/fieldtrip/preproc/private/butter.m | 3,559 | utf_8 | ad82b4c04911a5ea11fd6bd2cc5fd590 | % Copyright (C) 1999 Paul Kienzle
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in t... |
github | philippboehmsturm/antx-master | ft_statfun_roc.m | .m | antx-master/xspm8/external/fieldtrip/statfun/ft_statfun_roc.m | 5,372 | utf_8 | ec4b890f9fa0c3a897be1b3cc74e9910 | function [s, cfg] = statfun_roc(cfg, dat, design)
% STATFUN_roc computes the area under the curve (AUC) of the
% Receiver Operator Characteristic (ROC). This is a measure of the
% separability of the data divided over two conditions. The AUC can
% be used to test statistical significance of being able to predict
% on ... |
github | philippboehmsturm/antx-master | nansum.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/nansum.m | 185 | utf_8 | 4859ec062780c478011dd7a8d94684a0 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
if nargin == 1
dim = 1;
end
idx = isnan(x);
x(idx) = 0;
y = sum(x, dim);
end |
github | philippboehmsturm/antx-master | nanstd.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/nanstd.m | 231 | utf_8 | 0ff62b1c345b5ad76a9af59cf07c2983 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
|
github | philippboehmsturm/antx-master | warning_once.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/warning_once.m | 3,832 | utf_8 | 07dc728273934663973f4c716e7a3a1c | function [ws warned] = warning_once(varargin)
%
% Use as one of the following
% warning_once(string)
% warning_once(string, timeout)
% warning_once(id, string)
% warning_once(id, string, timeout)
% where timeout should be inf if you don't want to see the warning ever
% again. The default timeout value is 60 sec... |
github | philippboehmsturm/antx-master | nanmean.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/nanmean.m | 165 | utf_8 | e6c473a49d8be6e12960af55ced45e54 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
|
github | philippboehmsturm/antx-master | nanvar.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/nanvar.m | 1,093 | utf_8 | d9641af3bba1e2c6e3512199221e686c | % NANVAR provides a replacement for MATLAB's nanvar that is almost
% compatible.
%
% For usage see VAR. Note that the weight-vector is not supported. If you
% need it, please file a ticket at our bugtracker.
function Y = nanvar(X, w, dim)
switch nargin
case 1
% VAR(x)
% Normalize by n-1 when no dim is given... |
github | philippboehmsturm/antx-master | tinv.m | .m | antx-master/xspm8/external/fieldtrip/statfun/private/tinv.m | 7,634 | utf_8 | 8fe66ec125f91e1a7ac5f8d3cb2ac51a | function x = tinv(p,v);
% TINV Inverse of Student's T cumulative distribution function (cdf).
% X=TINV(P,V) returns the inverse of Student's T cdf with V degrees
% of freedom, at the values in P.
%
% The size of X is the common size of P and V. A scalar input
% functions as a constant matrix of the same s... |
github | philippboehmsturm/antx-master | nansum.m | .m | antx-master/xspm8/external/fieldtrip/src/nansum.m | 185 | utf_8 | 4859ec062780c478011dd7a8d94684a0 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
if nargin == 1
dim = 1;
end
idx = isnan(x);
x(idx) = 0;
y = sum(x, dim);
end |
github | philippboehmsturm/antx-master | nanstd.m | .m | antx-master/xspm8/external/fieldtrip/src/nanstd.m | 231 | utf_8 | 0ff62b1c345b5ad76a9af59cf07c2983 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
|
github | philippboehmsturm/antx-master | nanmean.m | .m | antx-master/xspm8/external/fieldtrip/src/nanmean.m | 165 | utf_8 | e6c473a49d8be6e12960af55ced45e54 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
|
github | philippboehmsturm/antx-master | nanvar.m | .m | antx-master/xspm8/external/fieldtrip/src/nanvar.m | 1,093 | utf_8 | d9641af3bba1e2c6e3512199221e686c | % NANVAR provides a replacement for MATLAB's nanvar that is almost
% compatible.
%
% For usage see VAR. Note that the weight-vector is not supported. If you
% need it, please file a ticket at our bugtracker.
function Y = nanvar(X, w, dim)
switch nargin
case 1
% VAR(x)
% Normalize by n-1 when no dim is given... |
github | philippboehmsturm/antx-master | ft_connectivity_corr.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/ft_connectivity_corr.m | 8,643 | utf_8 | ff666c57a9e6619f5cef4afbccd42832 | function [c, v, outcnt] = ft_connectivity_corr(input, varargin)
% FT_CONNECTIVITY_CORR computes correlation or coherence (or a related
% quantity) from a data-matrix containing a covariance or cross-spectral
% density. It implements the methods described in:
% Coherence: Rosenberg et al, The Fourier approach to the i... |
github | philippboehmsturm/antx-master | ft_connectivity_psi.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/ft_connectivity_psi.m | 5,704 | utf_8 | f3a2ec7e8d4d69aca6e1b1f88eb342cf | function [p, v, n] = ft_connectivity_psi(input, varargin)
% FT_CONNECTIVITY_PSI computes the phase slope index from a data-matrix
% containing the cross-spectral density. It implements the method described
% in: Nolte et al., Robustly estimating the flow direction of information
% in complex physical systems. Physical... |
github | philippboehmsturm/antx-master | nansum.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/nansum.m | 185 | utf_8 | 4859ec062780c478011dd7a8d94684a0 | % NANSUM provides a replacement for MATLAB's nanmean.
%
% For usage see SUM.
function y = nansum(x, dim)
if nargin == 1
dim = 1;
end
idx = isnan(x);
x(idx) = 0;
y = sum(x, dim);
end |
github | philippboehmsturm/antx-master | sfactorization_wilson2x2.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/sfactorization_wilson2x2.m | 4,756 | utf_8 | 9d8be7f686ab1325b21f3b94de613d12 | function [H, Z, S, psi] = sfactorization_wilson2x2(S,freq,Niterations,tol,cmbindx,fb,init)
% Usage : [H, Z, psi] = sfactorization_wilson(S,fs,freq);
% Inputs : S (1-sided, 3D-spectral matrix in the form of Channel x Channel x frequency)
% : fs (sampling frequency in Hz)
% : freq (a vector of frequencie... |
github | philippboehmsturm/antx-master | nanstd.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/nanstd.m | 231 | utf_8 | 0ff62b1c345b5ad76a9af59cf07c2983 | % NANSTD provides a replacement for MATLAB's nanstd that is almost
% compatible.
%
% For usage see STD. Note that the three-argument call with FLAG is not
% supported.
function Y = nanstd(varargin)
Y = sqrt(nanvar(varargin{:}));
|
github | philippboehmsturm/antx-master | warning_once.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/warning_once.m | 3,832 | utf_8 | 07dc728273934663973f4c716e7a3a1c | function [ws warned] = warning_once(varargin)
%
% Use as one of the following
% warning_once(string)
% warning_once(string, timeout)
% warning_once(id, string)
% warning_once(id, string, timeout)
% where timeout should be inf if you don't want to see the warning ever
% again. The default timeout value is 60 sec... |
github | philippboehmsturm/antx-master | nanmean.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/nanmean.m | 165 | utf_8 | e6c473a49d8be6e12960af55ced45e54 | % NANMEAN provides a replacement for MATLAB's nanmean.
%
% For usage see MEAN.
function y = nanmean(x, dim)
N = sum(~isnan(x), dim);
y = nansum(x, dim) ./ N;
end
|
github | philippboehmsturm/antx-master | sfactorization_wilson.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/sfactorization_wilson.m | 4,706 | utf_8 | ebcbea0ae06debde297adbb94bfb0e5e | function [H, Z, S, psi] = sfactorization_wilson(S,freq,Niterations,tol,fb,init)
% Usage : [H, Z, S, psi] = sfactorization_wilson(S,fs,freq);
% Inputs : S (1-sided, 3D-spectral matrix in the form of Channel x Channel x frequency)
% : fs (sampling frequency in Hz)
% : freq (a vector of frequencies) at wh... |
github | philippboehmsturm/antx-master | nanvar.m | .m | antx-master/xspm8/external/fieldtrip/connectivity/private/nanvar.m | 1,093 | utf_8 | d9641af3bba1e2c6e3512199221e686c | % NANVAR provides a replacement for MATLAB's nanvar that is almost
% compatible.
%
% For usage see VAR. Note that the weight-vector is not supported. If you
% need it, please file a ticket at our bugtracker.
function Y = nanvar(X, w, dim)
switch nargin
case 1
% VAR(x)
% Normalize by n-1 when no dim is given... |
github | philippboehmsturm/antx-master | beamformer_pcc.m | .m | antx-master/xspm8/external/fieldtrip/inverse/beamformer_pcc.m | 11,650 | utf_8 | 9448fde03bcc26701dc45d4191e63e50 | function [dipout] = beamformer_pcc(dip, grad, vol, dat, Cf, varargin)
% BEAMFORMER_PCC implements an experimental beamformer based on partial canonical
% correlations or coherences.
% Copyright (C) 2005-2008, Robert Oostenveld & Jan-Mathijs Schoffelen
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroima... |
github | philippboehmsturm/antx-master | beamformer_dics.m | .m | antx-master/xspm8/external/fieldtrip/inverse/beamformer_dics.m | 24,638 | utf_8 | 9201784dbd8090bd17ebbb75c3c3d1e5 | function [dipout] = beamformer_dics(dip, grad, vol, dat, Cf, varargin)
% BEAMFORMER_DICS scans on pre-defined dipole locations with a single dipole
% and returns the beamformer spatial filter output for a dipole on every
% location. Dipole locations that are outside the head will return a
% NaN value.
%
% Use as
% ... |
github | philippboehmsturm/antx-master | beamformer_lcmv.m | .m | antx-master/xspm8/external/fieldtrip/inverse/beamformer_lcmv.m | 16,360 | utf_8 | 24543219357b20596a7a2d8f35070a41 | function [dipout] = beamformer_lcmv(dip, grad, vol, dat, Cy, varargin)
% BEAMFORMER_LCMV scans on pre-defined dipole locations with a single dipole
% and returns the beamformer spatial filter output for a dipole on every
% location. Dipole locations that are outside the head will return a
% NaN value.
%
% Use as
% ... |
github | philippboehmsturm/antx-master | dipole_fit.m | .m | antx-master/xspm8/external/fieldtrip/inverse/dipole_fit.m | 11,095 | utf_8 | 3ed8bcfd404bb481eb98539a1e371239 | function [dipout] = dipole_fit(dip, sens, vol, dat, varargin)
% DIPOLE_FIT performs an equivalent current dipole fit with a single
% or a small number of dipoles to explain an EEG or MEG scalp topography.
%
% Use as
% [dipout] = dipole_fit(dip, sens, vol, dat, ...)
%
% Additional input arguments should be specified ... |
github | philippboehmsturm/antx-master | ft_hastoolbox.m | .m | antx-master/xspm8/external/fieldtrip/inverse/private/ft_hastoolbox.m | 21,701 | utf_8 | 7141791b922e3b46334b4d5888532adf | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | philippboehmsturm/antx-master | subsasgn.m | .m | antx-master/xspm8/@nifti/subsasgn.m | 14,541 | utf_8 | ffdb84b7956d93c2f9a0a980ccbe8a22 | function obj = subsasgn(obj,subs,varargin)
% Subscript assignment
% See subsref for meaning of fields.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: subsasgn.m 4136 2010-12-09 22:22:28Z guillaume $
switch subs(1).type,
c... |
github | philippboehmsturm/antx-master | subsref.m | .m | antx-master/xspm8/@nifti/subsref.m | 8,741 | utf_8 | 2d67123e4dc7e0b20a7ee19962324fee | function varargout = subsref(opt,subs)
% Subscript referencing
%
% Fields are:
% dat - a file-array representing the image data
% mat0 - a 9-parameter affine transform (from qform0)
% Note that the mapping is from voxels (where the first
% is considered to be at [1,1,1], to m... |
github | philippboehmsturm/antx-master | create.m | .m | antx-master/xspm8/@nifti/create.m | 1,963 | utf_8 | 3c70cc73a693e9e93f4a3f3b60c91d1c | function create(obj,wrt)
% Create a NIFTI-1 file
% FORMAT create(obj)
% This writes out the header information for the nifti object
%
% create(obj,wrt)
% This also writes out an empty image volume if wrt==1
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Cen... |
github | philippboehmsturm/antx-master | getdict.m | .m | antx-master/xspm8/@nifti/private/getdict.m | 5,226 | utf_8 | 94716c88e3d44be3c8207f14a928510a | function d = getdict
% Dictionary of NIFTI stuff
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: getdict.m 1143 2008-02-07 19:33:33Z spm $
persistent dict;
if ~isempty(dict),
d = dict;
return;
end;
% Datatype
t = ... |
github | philippboehmsturm/antx-master | write_extras.m | .m | antx-master/xspm8/@nifti/private/write_extras.m | 876 | utf_8 | f3686c5d5d6e88449972819a302e8c5c | function extras = write_extras(fname,extras)
% Write extra bits of information
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: write_extras.m 1143 2008-02-07 19:33:33Z spm $
[pth,nam,ext] = fileparts(fname);
switch ext
case... |
github | philippboehmsturm/antx-master | setpath.m | .m | antx-master/freiburgLight/setpath.m | 1,503 | utf_8 | 61605b0bdc54dfec7f0f06543e7c6327 |
%% SET PATHS For freiburg tools
% setpath or setpath(1) : SETS PATHS For freiburg tools
% setpath(0) :REMOVES PATHS For freiburg tools
function setpath(arg)
warning off;
if exist('arg')==0; arg=1; end
if arg==1
addpath(genpath(fullfile(pwd,'matlab', 'matlab_new')))
ad... |
github | philippboehmsturm/antx-master | buildtable.m | .m | antx-master/freiburgLight/allen/buildtable.m | 1,038 | utf_8 | 533e7574bda6931cad1b44fc010347b9 | function [table idxLUT] = buildtable(tree)
table = recur(tree);
cnt = 1;
for k = 1:length(table)
for j = 1:length(table{k})
str = table{k}(j).allinfo;
str.includes = [table{k}(1:j-1).id];
str.children = [table{k}(j).children];
str.nameinlist = [repmat('-',[1 j]) str.name];
... |
github | philippboehmsturm/antx-master | spm_uitab.m | .m | antx-master/freiburgLight/matlab/spm8/spm_uitab.m | 7,695 | utf_8 | e80b69279b276644a59f0e838bc07817 | function [handles] = spm_uitab(hparent,labels,callbacks,...
tag,active,height,tab_height)
% Create tabs in the SPM Graphics window
% FORMAT [handles] = spm_uitab(hfig,labels,callbacks,...
% tag,active,height,tab_height)
% This functiuon creates tabs in the SPM graphics window.
% These tabs may be associated with... |
github | philippboehmsturm/antx-master | spm_vb_ppm_anova.m | .m | antx-master/freiburgLight/matlab/spm8/spm_vb_ppm_anova.m | 3,873 | utf_8 | 5360b2f4d1d7fe1f61c455b53a468fd5 | function spm_vb_ppm_anova(SPM)
% Bayesian ANOVA using model comparison
% FORMAT spm_vb_ppm_anova(SPM)
%
% SPM - Data structure corresponding to a full model (ie. one
% containing all experimental conditions).
%
% This function creates images of differences in log evidence
% which characterise t... |
github | philippboehmsturm/antx-master | spm_coreg_paul.m | .m | antx-master/freiburgLight/matlab/spm8/spm_coreg_paul.m | 15,181 | utf_8 | 9d4ef60b26a7fd206c6d5484ab26092e | function [x ffmin] = spm_coreg_paul(varargin)
% Between modality coregistration using information theory
% FORMAT x = spm_coreg(VG,VF,flags)
% VG - handle for reference image (see spm_vol).
% VF - handle for source (moved) image.
% flags - a structure containing the following elements:
% sep - optim... |
github | philippboehmsturm/antx-master | spm_fmri_spm_ui.m | .m | antx-master/freiburgLight/matlab/spm8/spm_fmri_spm_ui.m | 19,710 | utf_8 | 9d0ac73f1907933c2ee6bdad95b8210b | function [SPM] = spm_fmri_spm_ui(SPM)
% Setting up the general linear model for fMRI time-series
% FORMAT [SPM] = spm_fmri_spm_ui(SPM)
%
% creates SPM with the following fields
%
% xY: [1x1 struct] - data structure
% nscan: [double] - vector of scans per session
% xBF: [1x1 struct] - Basis function st... |
github | philippboehmsturm/antx-master | spm_input.m | .m | antx-master/freiburgLight/matlab/spm8/spm_input.m | 89,728 | utf_8 | d9477978de23772976e2d790d78bf1f4 | function varargout = spm_input(varargin)
% Comprehensive graphical and command line input function
% FORMATs (given in Programmers Help)
%_______________________________________________________________________
%
% spm_input handles most forms of interactive user input for SPM.
% (File selection is handled by spm_select... |
github | philippboehmsturm/antx-master | spm_realign.m | .m | antx-master/freiburgLight/matlab/spm8/spm_realign.m | 18,205 | utf_8 | 71e4880ae3886c6cff4d532cbaa0810a | function P = spm_realign(P,flags)
% Estimation of within modality rigid body movement parameters
% FORMAT P = spm_realign(P,flags)
%
% P - matrix of filenames {one string per row}
% All operations are performed relative to the first image.
% ie. Coregistration is to the first image, and resampling
%... |
github | philippboehmsturm/antx-master | spm_surf.m | .m | antx-master/freiburgLight/matlab/spm8/spm_surf.m | 9,740 | utf_8 | aa92ddde8b875463a0fefee45e0a1d79 | function varargout = spm_surf(P,mode,thresh)
% Surface extraction
% FORMAT spm_surf(P,mode,thresh)
%
% P - char array of filenames
% Usually, this will be c1xxx.img & c2xxx.img - grey and white
% matter segments created using the segmentation routine.
% mode - operation mode [1: rendering, 2: s... |
github | philippboehmsturm/antx-master | spm_eeg_plotScalpData.m | .m | antx-master/freiburgLight/matlab/spm8/spm_eeg_plotScalpData.m | 11,761 | utf_8 | 47767f883d6ed147946a3f14900db01d | function [ZI,f] = spm_eeg_plotScalpData(Z,pos,ChanLabel,in)
% Display interpolated sensor data on the scalp in a new figure
% FORMAT [ZI,f] = spm_eeg_plotScalpData(Z,pos,ChanLabel,in)
%
% INPUT:
% Z - the data matrix at the sensors
% pos - the positions of the sensors
% ChanLabel - the names of t... |
github | philippboehmsturm/antx-master | spm_eeg_render.m | .m | antx-master/freiburgLight/matlab/spm8/spm_eeg_render.m | 10,872 | utf_8 | 52b7ba99932d4227bf2efefcc8766540 | function [out] = spm_eeg_render(m,options)
% Visualisation routine for the cortical surface
% FORMAT [out] = spm_eeg_render(m,options)
%
% INPUT:
% - m = MATLAB mesh (containing the fields .faces et .vertices) or GIFTI
% format file.
% - options = structure variable:
% .texture = texture to be projected onto the... |
github | philippboehmsturm/antx-master | spm_write_sn.m | .m | antx-master/freiburgLight/matlab/spm8/spm_write_sn.m | 19,859 | utf_8 | 0ea1c7ae2ba1644c71deaf8ae1518452 | function VO = spm_write_sn(V,prm,flags,extras)
% Write out warped images
% FORMAT VO = spm_write_sn(V,prm,flags,msk)
% V - Images to transform (filenames or volume structure).
% prm - Transformation information (filename or structure).
% flags - flags structure, with fields...
% interp - i... |
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