plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | philippboehmsturm/antx-master | spm_latex_cfg.m | .m | antx-master/xspm8/config/spm_latex_cfg.m | 6,676 | utf_8 | a47b123dac969fa8a766913b882670a1 | function spm_latex_cfg(c)
% Convert a job configuration tree into a series of LaTeX documents
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_latex_cfg.m 3934 2010-06-17 14:58:25Z guillaume $
if ~nargin... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_convert.m | .m | antx-master/xspm8/config/spm_cfg_eeg_convert.m | 7,130 | utf_8 | 9bf1bea2b0e3690b8d396162b76d4d33 | function S = spm_cfg_eeg_convert
% configuration file for data conversion
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_convert.m 3881 2010-05-07 21:02:57Z vladimir $
dataset = cfg_files;
dataset.... |
github | philippboehmsturm/antx-master | spm_cfg_cat.m | .m | antx-master/xspm8/config/spm_cfg_cat.m | 2,707 | utf_8 | 51b661dca39a9275dd0e770ae9c3cc6c | function cat = spm_cfg_cat
% SPM Configuration file for 3D to 4D volumes conversion
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_cat.m 3613 2009-12-04 18:47:59Z guillaume $
%---------------------... |
github | philippboehmsturm/antx-master | spm_cfg_minc.m | .m | antx-master/xspm8/config/spm_cfg_minc.m | 3,433 | utf_8 | db7b8cb0f154a59326a8d72eafdb6d94 | function minc = spm_cfg_minc
% SPM Configuration file for MINC Import
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_minc.m 3691 2010-01-20 17:08:30Z guillaume $
rev = '$Rev: 3691 $';
% -------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_tf_rescale.m | .m | antx-master/xspm8/config/spm_cfg_eeg_tf_rescale.m | 6,005 | utf_8 | 692deed1fb1ca3d56ae284ba0ae3850b | function S = spm_cfg_eeg_tf_rescale
% configuration file for rescaling spectrograms
%__________________________________________________________________________
% Copyright (C) 2009 Wellcome Trust Centre for Neuroimaging
% Will Penny
% $Id: spm_cfg_eeg_tf_rescale.m 4287 2011-04-04 13:55:54Z vladimir $
%---------------... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_data.m | .m | antx-master/xspm8/config/spm_cfg_fmri_data.m | 3,059 | utf_8 | 12045b3c567f606b6bfd8daba94e14d2 | function fmri_data = spm_cfg_fmri_data
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_data.m 1517 2008-04-29 15:46:08Z... |
github | philippboehmsturm/antx-master | spm_cfg_movefile.m | .m | antx-master/xspm8/config/spm_cfg_movefile.m | 2,964 | utf_8 | ed20756093eb13755fe0d764b20f3b79 | function movefile = spm_cfg_movefile
% SPM Configuration file for 'move'
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_movefile.m 4907 2012-09-06 19:33:21Z guillaume $
% ----------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_spec.m | .m | antx-master/xspm8/config/spm_cfg_fmri_spec.m | 41,739 | utf_8 | 34ff7beb83f6e1476649d3ad6cd9fca6 | function fmri_spec = spm_cfg_fmri_spec
% SPM Configuration file for fMRI model specification
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_spec.m 3691 2010-01-20 17:08:30Z guillaume $
rev = '$Rev: 3691 $';
% ---... |
github | philippboehmsturm/antx-master | spm_cfg_bms.m | .m | antx-master/xspm8/config/spm_cfg_bms.m | 26,212 | utf_8 | e9c005333a71f641ae7d9147b7144d8d | function bms = spm_cfg_bms
% Configuration file for BMS interface.
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Maria Joao Rosa
% $Id: spm_cfg_bms.m 3955 2010-06-29 17:26:29Z maria $
% -------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_convert2images.m | .m | antx-master/xspm8/config/spm_cfg_eeg_convert2images.m | 1,533 | utf_8 | 278f08c7b6bc00ad2186e3d343a12b7c | function S = spm_cfg_eeg_convert2images
% configuration file for writing voxel-based images from SPM M/EEG format,
% as a time-series of 2Dimages
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_conve... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_results.m | .m | antx-master/xspm8/config/spm_cfg_eeg_inv_results.m | 3,226 | utf_8 | 4785178456ae76c108a54bc2b56a776c | function results = spm_cfg_eeg_inv_results
% configuration file for creating images from results of source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_results.m 3976 2010-0... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_contrast.m | .m | antx-master/xspm8/config/spm_cfg_eeg_contrast.m | 2,514 | utf_8 | 5ef4acc26bd25c57a355ebd077aecc82 | function S = spm_cfg_eeg_contrast
% configuration file for computing contrast over epochs
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_contrast.m 3881 2010-05-07 21:02:57Z vladimir $
D = cfg_file... |
github | philippboehmsturm/antx-master | spm_cfg_checkreg.m | .m | antx-master/xspm8/config/spm_cfg_checkreg.m | 2,265 | utf_8 | c81f7c3223052066b263026099947cec | function checkreg = spm_cfg_checkreg
% SPM Configuration file for Check Reg
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_checkreg.m 4205 2011-02-21 15:39:08Z guillaume $
%-----------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_deletefiles.m | .m | antx-master/xspm8/config/spm_cfg_deletefiles.m | 2,355 | utf_8 | a52badd2dedc7ae616252beab2db79b1 | function deletefiles = spm_cfg_deletefiles
% SPM Configuration file for 'rm'
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_deletefiles.m 4907 2012-09-06 19:33:21Z guillaume $
rev = '$Rev: 4907 $';
% -----------------... |
github | philippboehmsturm/antx-master | spm_cfg_md.m | .m | antx-master/xspm8/config/spm_cfg_md.m | 2,106 | utf_8 | 203b2cc952d61779c598ca8fd36abf74 | function md = spm_cfg_md
% SPM Configuration file for 'mkdir'
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_md.m 4907 2012-09-06 19:33:21Z guillaume $
% ---------------------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_normalise.m | .m | antx-master/xspm8/config/spm_cfg_normalise.m | 25,506 | utf_8 | a01a87d691294117634f2d14d848977e | function normalise = spm_cfg_normalise
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_normalise.m 3804 2010-03-31 16:16:21Z... |
github | philippboehmsturm/antx-master | spm_cfg_disp.m | .m | antx-master/xspm8/config/spm_cfg_disp.m | 4,719 | utf_8 | 9f6f5adf2e1375a3f6df5d5daeb54bae | function disp = spm_cfg_disp
% SPM Configuration file for Image Display
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_disp.m 4205 2011-02-21 15:39:08Z guillaume $
%-------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_st.m | .m | antx-master/xspm8/config/spm_cfg_st.m | 8,731 | utf_8 | 16a36edc715d472d387db03f6733781d | function st = spm_cfg_st
% SPM Configuration file for Slice Timing Correction
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_st.m 4269 2011-03-29 16:03:43Z guillaume $
% -----------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_invert.m | .m | antx-master/xspm8/config/spm_cfg_eeg_inv_invert.m | 7,820 | utf_8 | d768c9182c47d6daeccc44b246268094 | function invert = spm_cfg_eeg_inv_invert
% configuration file for configuring imaging source inversion
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_invert.m 4326 2011-05-13 ... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_extract.m | .m | antx-master/xspm8/config/spm_cfg_eeg_inv_extract.m | 3,307 | utf_8 | 42d3e193e87fc5b983a7382f3f7d68e4 | function extract = spm_cfg_eeg_inv_extract
% configuration file for extracting source data from imaging source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2011 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_extract.m 4257 20... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_est.m | .m | antx-master/xspm8/config/spm_cfg_fmri_est.m | 24,501 | utf_8 | 14607a45526013760c39408f23f0d2fa | function fmri_est = spm_cfg_fmri_est
% SPM Configuration file for Model Estimation
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_est.m 3753 2010-03-05 13:06:47Z guillaume $
% ------------------------------------... |
github | philippboehmsturm/antx-master | paint.m | .m | antx-master/xspm8/@slover/paint.m | 10,669 | utf_8 | 58c77775943c79df7da192623addf239 | function obj = paint(obj, params)
% method to display slice overlay
% FORMAT paint(obj, params)
%
% Inputs
% obj - slice overlay object
% params - optional structure containing extra display parameters
% - refreshf - overrides refreshf in object
% - clf - overrides clf in... |
github | philippboehmsturm/antx-master | pr_basic_ui.m | .m | antx-master/xspm8/@slover/private/pr_basic_ui.m | 3,679 | utf_8 | 88d91189a824825f094d4979cbdc7fb4 | function obj = pr_basic_ui(imgs, dispf)
% GUI to request parameters for slover routine
% FORMAT obj = pr_basic_ui(imgs, dispf)
%
% GUI requests choices while accepting many defaults
%
% imgs - string or cell array of image names to display
% (defaults to GUI select if no arguments passed)
% dispf - optional fl... |
github | philippboehmsturm/antx-master | delete.m | .m | antx-master/xspm8/@xmltree/delete.m | 1,203 | utf_8 | f523d5fa52766f6af01c283da5bb87bf | function tree = delete(tree,uid)
% XMLTREE/DELETE Delete (delete a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be deleted
%_______________________________________________________________________
%
% Delete a subtree given its UID
% The tree parameter must be in inp... |
github | philippboehmsturm/antx-master | save.m | .m | antx-master/xspm8/@xmltree/save.m | 5,121 | utf_8 | fa70739c5d89fa5e5759fe4d0dd5d1b3 | function varargout = save(tree, filename)
% XMLTREE/SAVE Save an XML tree in an XML file
% FORMAT varargout = save(tree,filename)
%
% tree - XMLTree
% filename - XML output filename
% varargout - XML string
%_______________________________________________________________________
%
% Convert an XML tree into a wel... |
github | philippboehmsturm/antx-master | branch.m | .m | antx-master/xspm8/@xmltree/branch.m | 1,763 | utf_8 | f109760669fd1d0e0de8fc92a2a29e7d | function subtree = branch(tree,uid)
% XMLTREE/BRANCH Branch Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the root element of the subtree
% subtree - XMLTree object (a subtree from tree)
%_______________________________________________________________________
%
% Return a subtr... |
github | philippboehmsturm/antx-master | flush.m | .m | antx-master/xspm8/@xmltree/flush.m | 1,426 | utf_8 | fe4b3a9c9e324178be9b06001c9fec8f | function tree = flush(tree,uid)
% XMLTREE/FLUSH Flush (Clear a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be cleared
% Default is root
%_______________________________________________________________________
%
% Clear a subtree given its UID (remove al... |
github | philippboehmsturm/antx-master | copy.m | .m | antx-master/xspm8/@xmltree/copy.m | 1,644 | utf_8 | 8cbde6d7d6e761ad86ecb0379b54b269 | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
github | philippboehmsturm/antx-master | convert.m | .m | antx-master/xspm8/@xmltree/convert.m | 5,612 | utf_8 | c2c0cfe54bad9ce85b1cccc7c53acfce | function s = convert(tree,uid)
% XMLTREE/CONVERT Converter an XML tree in a Matlab structure
%
% tree - XMLTree object
% uid - uid of the root of the subtree, if provided.
% Default is root
% s - converted structure
%_______________________________________________________________________... |
github | philippboehmsturm/antx-master | editor.m | .m | antx-master/xspm8/@xmltree/editor.m | 12,428 | utf_8 | 6344af0067d2405a13d1dabf8e96efc3 | function editor(tree)
%XMLTREE/EDITOR A Graphical User Interface for an XML tree
% EDITOR(TREE) opens a new Matlab figure displaying the xmltree
% object TREE.
% H = EDITOR(TREE) also returns the figure handle H.
%
% This is a beta version of <xmltree/view> successor
%
% See also XMLTREE
%_________________________... |
github | philippboehmsturm/antx-master | find.m | .m | antx-master/xspm8/@xmltree/find.m | 5,904 | utf_8 | f06a6b831a6222020bfa34df1176ccaa | function list = find(varargin)
% XMLTREE/FIND Find elements in a tree with specified characteristics
% FORMAT list = find(varargin)
%
% tree - XMLTree object
% xpath - string path with specific grammar (XPath)
% uid - lists of root uid's
% parameter/value - pair of pattern
% list - list of uid's of matched elements... |
github | philippboehmsturm/antx-master | xml_parser.m | .m | antx-master/xspm8/@xmltree/private/xml_parser.m | 16,122 | utf_8 | e9c0fb44fd5c086cab09c4df5a6e0087 | function tree = xml_parser(xmlstr)
% XML (eXtensible Markup Language) Processor
% FORMAT tree = xml_parser(xmlstr)
%
% xmlstr - XML string to parse
% tree - tree structure corresponding to the XML file
%_______________________________________________________________________
%
% xml_parser.m is an XML 1.0 (http://ww... |
github | philippboehmsturm/antx-master | save.m | .m | antx-master/xspm8/@gifti/save.m | 20,878 | utf_8 | 9dda5745b44a50e7b47d1885c7e30435 | function save(this,filename,encoding)
% Save GIfTI object in a GIfTI format file
% FORMAT save(this,filename)
% this - GIfTI object
% filename - name of GIfTI file to be created [Default: 'untitled.gii']
% encoding - optional argument to specify encoding format, among
% ASCII, Base64Binary, GZipBase6... |
github | philippboehmsturm/antx-master | gifti.m | .m | antx-master/xspm8/@gifti/gifti.m | 3,622 | utf_8 | 770f3ed1f17658bff49edbacd0062416 | function this = gifti(varargin)
% GIfTI Geometry file format class
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%_____________________________________________________________... |
github | philippboehmsturm/antx-master | read_gifti_file.m | .m | antx-master/xspm8/@gifti/private/read_gifti_file.m | 6,672 | utf_8 | 6b1ffd0854407b6710a55c2345f19d7e | function this = read_gifti_file(filename, this)
% Low level reader of GIfTI 1.0 files
% FORMAT this = read_gifti_file(filename, this)
% filename - XML GIfTI filename
% this - structure with fields 'metaData', 'label' and 'data'.
%__________________________________________________________________________
% Cop... |
github | philippboehmsturm/antx-master | isintent.m | .m | antx-master/xspm8/@gifti/private/isintent.m | 2,094 | utf_8 | 558a3aa4dffb45d067e660999e803050 | function [a, b] = isintent(this,intent)
% Correspondance between fieldnames and NIfTI intents
% FORMAT ind = isintent(this,intent)
% this - GIfTI object
% intent - fieldnames
% a - indices of found intent(s)
% b - indices of dataarrays of found intent(s)
%____________________________________________... |
github | philippboehmsturm/antx-master | mne_load_coil_def.m | .m | antx-master/xspm8/external/mne/mne_load_coil_def.m | 8,644 | utf_8 | 772b6afb3be6c17199d073e9078d092f | function [CoilDef,Header] = mne_load_coil_def(fname);
%
%
% [CoilDef,Header] = mne_load_coil_def(fname);
% CoilDef = mne_load_coil_def(fname);
%
% If file name is not specified, the standard coil definition file
% $MNE_ROOT/setup/mne/coil_def.dat or $MNE_ROOT/share/mne/coil_def.dat is read
%
% The co... |
github | philippboehmsturm/antx-master | fiff_find_evoked.m | .m | antx-master/xspm8/external/mne/fiff_find_evoked.m | 2,846 | utf_8 | f7c5e4fd4395754f0e87d3fe6e984d62 | function [data_sets] = fiff_find_evoked(fname)
%
% [data_sets] = fiff_find_evoked(fname)
%
% Find all evoked data sets in a fif file and create a list of descriptors
%
%
% Author : Matti Hamalainen, MGH Martinos Center
% License : BSD 3-clause
%
global FIFF;
if isempty(FIFF)
FIFF = fiff_define_constants();
e... |
github | philippboehmsturm/antx-master | bemcp_example.m | .m | antx-master/xspm8/external/bemcp/bemcp_example.m | 21,718 | utf_8 | b6bc2bc4ee1696a4f8720bd0d79be654 |
function bemcp_example
% Simple function to test/demonstrate how the Boundary element functions are
% used in combination with Fildtrip/Forwinv routines.
%
% 1. A model is created as 3 concentric meshed spheres (using FT's
% icosahedron routines),
% 2. then random electrodes are placed on the upper part of the outer... |
github | philippboehmsturm/antx-master | writeCPersist.m | .m | antx-master/xspm8/external/ctf/writeCPersist.m | 5,086 | utf_8 | 0c56dc571aa56100f050678e5fe815ff | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%% Function writeCPersist %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function writeCPersist(filename,Tag)
% Version 1.2 24 April 2007. Removed terminating null characters from charatcer strings
% ... |
github | philippboehmsturm/antx-master | getCTFBalanceCoefs.m | .m | antx-master/xspm8/external/ctf/getCTFBalanceCoefs.m | 20,490 | utf_8 | 2c434fcbdb53fbc50ee3fbda72e98883 | function [alphaMEG,MEGindex,MEGbalanceindex,alphaGref,Grefindex,Gbalanceindex]=...
getCTFBalanceCoefs(ds,balanceType,unit);
% Reads balance coefficients for SQUID data in phi0's, and converts to coefficients
% for data in physical units.
% Input : ds : (1) ds structure from readCTFds
% balanceType : 'N... |
github | philippboehmsturm/antx-master | writeCTFds.m | .m | antx-master/xspm8/external/ctf/writeCTFds.m | 68,946 | utf_8 | 96615f4833d69490d5b3e47f6f86c538 | function ds=writeCTFds(datasetname,ds,data,unit);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %
% ... |
github | philippboehmsturm/antx-master | writeRes4.m | .m | antx-master/xspm8/external/ctf/writeRes4.m | 8,560 | utf_8 | 416bc2b62624835c63140e54415d2f49 | function res4=writeRes4(res4File,res4,MAX_COILS);
% Write the new .res4 file. Use ieee-be (big endian) format
% Character-string output is done using function writeCTFstring which
% checks that strings are the correct length for the .res4 file format.
% Function calls: - writeCTFstring (included in this listing).... |
github | philippboehmsturm/antx-master | addCTFtrial.m | .m | antx-master/xspm8/external/ctf/addCTFtrial.m | 51,483 | utf_8 | b59730fdb231f07741e7e87dea9e6c1c | function cntrl=addCTFtrial(datasetname,data,unit,mrk,cls,badSegments);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %... |
github | philippboehmsturm/antx-master | setCTFDataBalance.m | .m | antx-master/xspm8/external/ctf/setCTFDataBalance.m | 32,056 | utf_8 | 894c3744554abe635876ce6944dca0cd | function [data,ds]=setCTFDataBalance(data,ds,balance1,unit,chanList,messages);
% Version 1.1 13 April 2007 Mod to chanList: If chanList is omitted and
% size(data,2)<ds.res4.no_channels, then setCTFDataBalance
% sets chanList=1:size(data,2) and prints a war... |
github | philippboehmsturm/antx-master | writeCTFMRI.m | .m | antx-master/xspm8/external/ctf/writeCTFMRI.m | 8,517 | utf_8 | c6bdbc15d67e3621b8109f6b399f5eae | function writeCTFMRI(fileName,MRItags,MRIdata);
% Version 1.2 25 April 2007 Module writeCPersist changed, and removed from this text
% file.
% Version 1.1 19 April 2007 : No changes from v1.0
% Version 1.0 27 Oct. 2006
% Write a CTF MRI in v4 format.
% For file format and a def... |
github | philippboehmsturm/antx-master | readCTFds.m | .m | antx-master/xspm8/external/ctf/readCTFds.m | 36,570 | utf_8 | e228d972ce0710af61be4d1d0c89f3fe | function ds=readCTFds(datasetname)
% ************************************************************************
%
% This program is provided to users of CTF MEG systems as a courtesy only.
% It's operation has not been verified for clinical use.
% Please do not redistribute it without permission from CTF Systems I... |
github | philippboehmsturm/antx-master | ft_prepare_layout.m | .m | antx-master/xspm8/external/fieldtrip/ft_prepare_layout.m | 32,267 | utf_8 | 18d451bdbc116b579311470991ea5e7e | function [lay, cfg] = ft_prepare_layout(cfg, data)
% FT_PREPARE_LAYOUT loads or creates a 2-D layout of the channel locations. This layout
% is required for plotting the topographical distribution of the potential
% or field distribution, or for plotting timecourses in a topographical
% arrangement.
%
% Use as
% la... |
github | philippboehmsturm/antx-master | ft_analysispipeline.m | .m | antx-master/xspm8/external/fieldtrip/ft_analysispipeline.m | 20,188 | utf_8 | d09d01943d4f0a9fb448ce59b763a52a | function [pipeline] = ft_analysispipeline(cfg, data)
% FT_ANALYSIPIPELINE reconstructs the complete analysis pipeline that was used to create
% the input FieldTrip data structure. The pipeline will be visualized as a flowchart.
% In the future it will be possible to output the complete pipeline as a MATLAB script
% or... |
github | philippboehmsturm/antx-master | ft_freqbaseline.m | .m | antx-master/xspm8/external/fieldtrip/ft_freqbaseline.m | 6,365 | utf_8 | 8e3f594a996245ab60e43110c92934ef | function [freq] = ft_freqbaseline(cfg, freq)
% FT_FREQBASELINE performs baseline normalization for time-frequency data
%
% Use as
% [freq] = ft_freqbaseline(cfg, freq)
% where the freq data comes from FT_FREQANALYSIS and the configuration
% should contain
% cfg.baseline = [begin end] (default = 'no')
% cfg.... |
github | philippboehmsturm/antx-master | ft_sourceinterpolate.m | .m | antx-master/xspm8/external/fieldtrip/ft_sourceinterpolate.m | 18,972 | utf_8 | e8e4f5c04c87d8718c7769028703cede | function [interp] = ft_sourceinterpolate(cfg, functional, anatomical)
% FT_SOURCEINTERPOLATE interpolates the source reconstructed activity
% or a statistical distribution onto the voxels or vertices of an
% anatomical description of the brain. Both the functional and the
% anatomical data can either describe a 3-dim... |
github | philippboehmsturm/antx-master | ft_megplanar.m | .m | antx-master/xspm8/external/fieldtrip/ft_megplanar.m | 14,646 | utf_8 | af259a2e1ff9a0dca3919e64523a12c3 | function [data] = ft_megplanar(cfg, data)
% FT_MEGPLANAR computes planar MEG gradients gradients for raw data or average
% event-related field data. It can also convert frequency-domain data that was computed
% using FT_FREQANALYSIS, as long as it contains the complex-valued fourierspcrm and not
% only the powspctrm.
... |
github | philippboehmsturm/antx-master | ft_movieplotTFR.m | .m | antx-master/xspm8/external/fieldtrip/ft_movieplotTFR.m | 15,885 | utf_8 | 4629b5114994ea433b22443e6dabab05 | function [cfg] = ft_movieplotTFR(cfg, data)
% FT_MOVIEPLOTTFR makes a movie of a time frequency representation of power or coherence
%
% Use as
% ft_movieplotTFR(cfg, data)
% where the input data comes from FT_FREQANALYSIS or FT_FREQDESCRIPTIVES and the
% configuration is a structure that can contain
% cfg.parame... |
github | philippboehmsturm/antx-master | ft_volumerealign.m | .m | antx-master/xspm8/external/fieldtrip/ft_volumerealign.m | 36,731 | utf_8 | 393894855ca91a6ebaba17f940cea0b8 | function [realign, h] = ft_volumerealign(cfg, mri, target)
% FT_VOLUMEREALIGN spatially aligns an anatomical MRI with head coordinates
% based on external fiducials or anatomical landmarks. This function does
% not change the volume itself, but adjusts the homogeneous transformation
% matrix that describes the coordin... |
github | philippboehmsturm/antx-master | ft_qualitycheck.m | .m | antx-master/xspm8/external/fieldtrip/ft_qualitycheck.m | 25,639 | utf_8 | e995fba1c9f2599395608faaf67621ec | function [varargout] = ft_qualitycheck(cfg)
% FT_QUALITYCHECK performs a quality inspection of a given MEG/EEG dataset,
% stores (.mat), and visualizes the result (.png and .pdf).
%
% This function segments the data into 10-second pieces and performs the
% following analyses:
% 1) reads the properties of the dataset
... |
github | philippboehmsturm/antx-master | ft_denoise_pca.m | .m | antx-master/xspm8/external/fieldtrip/ft_denoise_pca.m | 16,673 | utf_8 | 8eba524b752f9743586ca6d1507aa9fb | function data = ft_denoise_pca(cfg, varargin)
% FT_DENOISE_PCA performs a principal component analysis (PCA) on specified
% reference channels and subtracts the projection of the data of interest onto
% this orthogonal basis from the data of interest. This is the algorithm which
% is applied by 4D to compute noise can... |
github | philippboehmsturm/antx-master | ft_sensorrealign.m | .m | antx-master/xspm8/external/fieldtrip/ft_sensorrealign.m | 31,763 | utf_8 | a8c06b8f47f8da67954655edab1ec82a | function [elec_realigned] = ft_sensorrealign(cfg, elec_original)
% FT_SENSORREALIGN rotates and translates electrode and gradiometer
% sensor positions to template electrode positions or towards the head
% surface. It can either perform a rigid body transformation, in which only
% the coordinate system is changed, or ... |
github | philippboehmsturm/antx-master | ft_databrowser.m | .m | antx-master/xspm8/external/fieldtrip/ft_databrowser.m | 74,844 | utf_8 | 5bf9df5cccb44bd8eeead55f5453f237 | function [cfg] = ft_databrowser(cfg, data)
% FT_DATABROWSER can be used for visual inspection of data. Artifacts that
% were detected by artifact functions (see FT_ARTIFACT_xxx functions where
% xxx is the type of artifact) are marked. Additionally data pieces can be
% marked and unmarked as artifact by manual selecti... |
github | philippboehmsturm/antx-master | ft_singleplotER.m | .m | antx-master/xspm8/external/fieldtrip/ft_singleplotER.m | 26,306 | utf_8 | 5939ca528f41ee990267b9257eb92fe5 | function [cfg] = ft_singleplotER(cfg, varargin)
% FT_SINGLEPLOTER plots the event-related fields or potentials of a single
% channel or the average over multiple channels. Multiple datasets can be
% overlayed.
%
% Use as
% ft_singleplotER(cfg, data)
% or
% ft_singleplotER(cfg, data1, data2, ..., datan)
%
% The dat... |
github | philippboehmsturm/antx-master | ft_analysisprotocol.m | .m | antx-master/xspm8/external/fieldtrip/ft_analysisprotocol.m | 20,299 | utf_8 | aa755691c86b456eef58b268f25d837a | function [script, details] = ft_analysisprotocol(cfg, data)
% FT_ANALYSISPROTOCOL tries to reconstruct the complete analysis protocol that
% was used to create an arbitrary FieldTrip data structure. It will create
% a Matlab script (as text file) and a flowchart with a graphical
% representation.
%
% Use as
% ft_ana... |
github | philippboehmsturm/antx-master | ft_mvaranalysis.m | .m | antx-master/xspm8/external/fieldtrip/ft_mvaranalysis.m | 17,631 | utf_8 | 170b19b1e29004c2c509ef166d2c2e7e | function [mvardata] = ft_mvaranalysis(cfg, data)
% FT_MVARANALYSIS performs multivariate autoregressive modeling on
% time series data over multiple trials.
%
% Use as
% [mvardata] = ft_mvaranalysis(cfg, data)
%
% The input data should be organised in a structure as obtained from
% the FT_PREPROCESSING function. The... |
github | philippboehmsturm/antx-master | ft_megrealign.m | .m | antx-master/xspm8/external/fieldtrip/ft_megrealign.m | 18,641 | utf_8 | 1cda98807ec99633822ecdf42991629d | function [data] = ft_megrealign(cfg, data)
% FT_MEGREALIGN interpolates MEG data towards standard gradiometer locations
% by projecting the individual timelocked data towards a coarse source
% reconstructed representation and computing the magnetic field on
% the standard gradiometer locations.
%
% Use as
% [interp]... |
github | philippboehmsturm/antx-master | ft_volumelookup.m | .m | antx-master/xspm8/external/fieldtrip/ft_volumelookup.m | 11,852 | utf_8 | 916f8874426446763ab71bbde375fd7b | function [output] = ft_volumelookup(cfg, volume)
% FT_VOLUMELOOKUP can be used in to combine an anatomical or functional
% atlas with source recunstruction. You can use it for forward and reverse
% lookup.
%
% Given the anatomical or functional label, it looks up the locations and
% creates a mask (as a binary volume)... |
github | philippboehmsturm/antx-master | ft_multiplotTFR.m | .m | antx-master/xspm8/external/fieldtrip/ft_multiplotTFR.m | 29,967 | utf_8 | 539fb58a4046a8166a5781efb53b569c | function [cfg] = ft_multiplotTFR(cfg, data)
% FT_MULTIPLOTTFR plots time-frequency representations of power or
% coherence in a topographical layout. The plots of the indivual sensors
% are arranged according to their location specified in the layout.
%
% Use as
% ft_multiplotTFR(cfg, data)
%
% The data can be a tim... |
github | philippboehmsturm/antx-master | ft_defaults.m | .m | antx-master/xspm8/external/fieldtrip/ft_defaults.m | 9,592 | utf_8 | ca5df74513e83b199c1f0ed30f718519 | function ft_defaults
% FT_DEFAULTS (ending with "s") sets some general settings in the global variable
% ft_default (without the "s") and takes care of the required path settings. This
% function is called at the begin of all FieldTrip functions.
%
% The configuration defaults are stored in the global "ft_default" str... |
github | philippboehmsturm/antx-master | ft_prepare_neighbours.m | .m | antx-master/xspm8/external/fieldtrip/ft_prepare_neighbours.m | 12,121 | utf_8 | 246abb4a5696ac99d7b95ab9afa6585c | function [neighbours, cfg] = ft_prepare_neighbours(cfg, data)
% FT_PREPARE_NEIGHBOURS finds the neighbours of the channels based on three
% different methods. Using the 'distance'-method, prepare_neighbours is
% based on a minimum neighbourhood distance (in cfg.neighbourdist). The
% 'triangulation'-method calculates a... |
github | philippboehmsturm/antx-master | ft_conjunctionanalysis.m | .m | antx-master/xspm8/external/fieldtrip/ft_conjunctionanalysis.m | 8,590 | utf_8 | a03da23d74c832a62651ec40acffd376 | function [conjunction] = ft_conjunctionanalysis(cfg, varargin)
% FT_CONJUNCTIONANALYSIS finds the minimum statistic common across two or
% more contrasts, i.e. data following ft_xxxstatistics. Furthermore, it
% finds the overlap of sensors/voxels that show statistically significant
% results (a logical AND on the m... |
github | philippboehmsturm/antx-master | ft_sliceinterp.m | .m | antx-master/xspm8/external/fieldtrip/ft_sliceinterp.m | 18,439 | utf_8 | bd145a75e58dc47cf4ea80eb8999f6dd | function [outim]=ft_sliceinterp(cfg, ininterp)
% FT_SLICEINTERP plots a 2D-montage of source reconstruction and anatomical MRI
% after these have been interpolated onto the same grid.
%
% Use as
% ft_sliceinterp(cfg, interp)
% or
% [rgbimage] = ft_sliceinterp(cfg, interp), rgbimage is the monatage image
%
% w... |
github | philippboehmsturm/antx-master | ft_clusterplot.m | .m | antx-master/xspm8/external/fieldtrip/ft_clusterplot.m | 16,789 | utf_8 | c4c3bbddd939a0c172b983f111def76a | function [cfg] = ft_clusterplot(cfg, stat)
% FT_CLUSTERPLOT plots a series of topoplots with found clusters highlighted.
% stat is 2D or 1D data from FT_TIMELOCKSTATISTICS or FT_FREQSTATISTICS with 'cluster'
% as cfg.correctmc. 2D: stat from FT_TIMELOCKSTATISTICS not averaged over
% time, or stat from FT_FREQSTATISTIC... |
github | philippboehmsturm/antx-master | ft_sourcemovie.m | .m | antx-master/xspm8/external/fieldtrip/ft_sourcemovie.m | 21,618 | utf_8 | ec436384a67196b47d56edfc701a3099 | function [cfg, M] = ft_sourcemovie(cfg, source, source2)
% FT_SOURCEMOVIE displays the source reconstruction on a cortical mesh
% and allows the user to scroll through time with a movie
%
% Use as
% ft_sourcemovie(cfg, source)
% where the input source data is obtained from FT_SOURCEANALYSIS and cfg is
% a configurat... |
github | philippboehmsturm/antx-master | ft_sourcestatistics.m | .m | antx-master/xspm8/external/fieldtrip/ft_sourcestatistics.m | 20,635 | utf_8 | 1595794cee3bcfd803961c94261f78ba | function [stat] = ft_sourcestatistics(cfg, varargin)
% FT_SOURCESTATISTICS computes the probability for a given null-hypothesis using
% a parametric statistical test or using a non-parametric randomization test.
%
% Use as
% [stat] = ft_sourcestatistics(cfg, source1, source2, ...)
% where the input data is the resu... |
github | philippboehmsturm/antx-master | ft_sourcedescriptives.m | .m | antx-master/xspm8/external/fieldtrip/ft_sourcedescriptives.m | 48,234 | utf_8 | df813b6e3dc10a6821632c72738012e6 | function [source] = ft_sourcedescriptives(cfg, source)
% FT_SOURCEDESCRIPTIVES computes descriptive parameters of the source
% analysis results.
%
% Use as
% [source] = ft_sourcedescriptives(cfg, source)
%
% where cfg is a structure with the configuration details and source is the
% result from a beamformer source e... |
github | philippboehmsturm/antx-master | ft_freqanalysis_mvar.m | .m | antx-master/xspm8/external/fieldtrip/ft_freqanalysis_mvar.m | 6,212 | utf_8 | b7a476d517585098dfe29498494e1061 | function [freq] = ft_freqanalysis_mvar(cfg, data)
% FT_FREQANALYSIS_MVAR performs frequency analysis on
% mvar data, by fourier transformation of the coefficients. The output
% contains cross-spectral density, spectral transfer matrix, and the
% covariance of the innovation noise. The dimord = 'chan_chan(_freq)(_time)... |
github | philippboehmsturm/antx-master | ft_math.m | .m | antx-master/xspm8/external/fieldtrip/ft_math.m | 7,107 | utf_8 | 56b3b1a3236eeb3c5433a72fb65e3ba8 | function data = ft_math(cfg, varargin)
% FT_MATH performs mathematical operations on FieldTrip data structures,
% such as addition, subtraction, division, etc.
%
% Use as
% data = ft_examplefunction(cfg, data1, data2, ...)
% with one or multiple FieldTrip data structures as input and where cfg is a
% configuration s... |
github | philippboehmsturm/antx-master | ft_removetmsartifact.m | .m | antx-master/xspm8/external/fieldtrip/ft_removetmsartifact.m | 7,826 | utf_8 | 3f77889260456f76aa0f2bad5b4e70f1 | function data = ft_removetmsartifact(cfg, data)
% FT_REMOVETMSARTIFACT removes TMS artifacts from EEG data
%
% Use as
% data = ft_removetmsartifact(cfg, data)
% where the input data is a raw data, for example obtained from FT_PREPROCESSING, and
% cfg is a configuratioun structure that should contain
% cfg.method ... |
github | philippboehmsturm/antx-master | ft_interactiverealign.m | .m | antx-master/xspm8/external/fieldtrip/ft_interactiverealign.m | 15,020 | utf_8 | 29855615aa0bf4f359855c52a73878b6 | function cfg = ft_interactiverealign(cfg)
% FT_INTERACTIVEREALIGN interactively rotates, scales and translates
% electrode positions to template electrode positions or towards
% the head surface.
%
% Use as
% [cfg] = ft_interactiverealign(cfg)
%
% The configuration structure should contain the individuals geometrica... |
github | philippboehmsturm/antx-master | ft_neighbourplot.m | .m | antx-master/xspm8/external/fieldtrip/ft_neighbourplot.m | 13,837 | utf_8 | ca95890c5dd526a7238dfeb645702897 | function [cfg] = ft_neighbourplot(cfg, data)
% FT_NEIGHBOURPLOT visualizes neighbouring channels in a particular channel
% configuration. The positions of the channel are specified in a
% gradiometer or electrode configuration or from a layout.
%
% Use as
% ft_neighbourplot(cfg)
% or as
% ft_neighbourplot(cfg, dat... |
github | philippboehmsturm/antx-master | ft_topoplotTFR.m | .m | antx-master/xspm8/external/fieldtrip/ft_topoplotTFR.m | 44,990 | utf_8 | 68581358241f3de5de9302c9b0807e29 | function [cfg] = ft_topoplotTFR(cfg, varargin)
% FT_TOPOPLOTTFR plots the topographic distribution over the head
% of a 3-dimensional data representations such as time-frequency
% representation of the power or coherence spectrum.
%
% Use as
% ft_topoplotTFR(cfg, freq)
%
% The input freq structrure should contain a ... |
github | philippboehmsturm/antx-master | ft_appendfreq.m | .m | antx-master/xspm8/external/fieldtrip/ft_appendfreq.m | 12,697 | utf_8 | d808aa3cf94695d0e5f63462ebf5869f | function [freq] = ft_appendfreq(cfg, varargin)
% FT_APPENDFREQ concatenates multiple frequency or time-frequency data
% structures that have been processed separately. If the input data
% structures contain different channels, it will be concatenated along the
% channel direction. If the channels are identical in the ... |
github | philippboehmsturm/antx-master | ft_electroderealign.m | .m | antx-master/xspm8/external/fieldtrip/ft_electroderealign.m | 28,137 | utf_8 | 06410d99f7ae866c70c2aed5f814bd24 | function [norm] = ft_electroderealign(cfg)
% FT_ELECTRODEREALIGN rotates and translates electrode positions to
% template electrode positions or towards the head surface. It can
% either perform a rigid body transformation, in which only the
% coordinate system is changed, or it can apply additional deformations
% to ... |
github | philippboehmsturm/antx-master | ft_singleplotTFR.m | .m | antx-master/xspm8/external/fieldtrip/ft_singleplotTFR.m | 23,569 | utf_8 | 89516bc37d55606231d19db09c9d982f | function [cfg] = ft_singleplotTFR(cfg, data)
% FT_SINGLEPLOTTFR plots the time-frequency representation of power of a
% single channel or the average over multiple channels.
%
% Use as
% ft_singleplotTFR(cfg,data)
%
% The input freq structure should be a a time-frequency representation of
% power or coherence that w... |
github | philippboehmsturm/antx-master | ft_multiplotER.m | .m | antx-master/xspm8/external/fieldtrip/ft_multiplotER.m | 31,382 | utf_8 | 1bd80c2bfc256430d7fae96db74f6f5c | function [cfg] = ft_multiplotER(cfg, varargin)
% FT_MULTIPLOTER plots the event-related fields or potentials versus time
% or of oscillatory activity (power or coherence) versus frequency. Multiple
% datasets can be overlayed. The plots are arranged according to their
% location specified in the layout.
%
% Use as
% ... |
github | philippboehmsturm/antx-master | ft_prepare_mesh.m | .m | antx-master/xspm8/external/fieldtrip/ft_prepare_mesh.m | 10,173 | utf_8 | fbd785246b232a3602fdd438fd772878 | function [bnd, cfg] = ft_prepare_mesh(cfg, mri)
% FT_PREPARE_MESH creates a triangulated surface mesh for the volume
% conduction model. The mesh can either be selected manually from raw
% mri data or can be generated starting from a segmented volume
% information stored in the mri structure. The result is a bnd
% str... |
github | philippboehmsturm/antx-master | ft_compile_mex.m | .m | antx-master/xspm8/external/fieldtrip/ft_compile_mex.m | 7,313 | utf_8 | 99f0549ed011b3639df37378d6aa4305 | function ft_compile_mex(force)
% FT_COMPILE_MEX can be used for compiling most of the FieldTrip MEX files
% Note that this function does not put the MEX files in the correct
% location in the private folders, this is managed by SVN autosync. In case
% you are not working with SVN and you want to recompile the mex file... |
github | philippboehmsturm/antx-master | fieldtrip2fiff.m | .m | antx-master/xspm8/external/fieldtrip/fieldtrip2fiff.m | 8,464 | utf_8 | 64f159942bcde33deaf3ee377c4fcf68 | function fieldtrip2fiff(filename, data)
% FIELDTRIP2FIFF saves a FieldTrip raw data structure as a fiff-file,
% in order to be useable by the Neuromag software, or in the MNE suite
% software.
%
% Use as
% fieldtrip2fiff(filename, data)
% where filename is the name of the output file, and data is a raw
% data struct... |
github | philippboehmsturm/antx-master | ft_artifact_zvalue.m | .m | antx-master/xspm8/external/fieldtrip/ft_artifact_zvalue.m | 44,375 | utf_8 | 328e4d904f0da260a5ef1d676bee355a | function [cfg, artifact] = ft_artifact_zvalue(cfg, data)
% FT_ARTIFACT_ZVALUE reads the interesting segments of data from file and
% identifies artifacts by means of thresholding the z-transformed value
% of the preprocessed raw data. Depending on the preprocessing options,
% this method will be sensitive to EOG, musc... |
github | philippboehmsturm/antx-master | besa2fieldtrip.m | .m | antx-master/xspm8/external/fieldtrip/besa2fieldtrip.m | 16,161 | utf_8 | 16dbde9bd7a8b61a3207953ffb97ae31 | function [data] = besa2fieldtrip(input)
% BESA2FIELDTRIP reads and converts various BESA datafiles into a FieldTrip
% data structure, which subsequently can be used for statistical analysis
% or other analysis methods implemented in Fieldtrip.
%
% Use as
% [data] = besa2fieldtrip(filename)
% where the filename shoul... |
github | philippboehmsturm/antx-master | ft_topoplotCC.m | .m | antx-master/xspm8/external/fieldtrip/ft_topoplotCC.m | 10,121 | utf_8 | e97031b4c8c292d5ba9f6f0a48e87f29 | function [cfg] = ft_topoplotCC(cfg, freq)
% FT_TOPOPLOTCC plots the coherence between channel pairs
%
% Use as
% ft_topoplotCC(cfg, freq)
%
% The configuration should contain:
% cfg.feedback = string (default = 'textbar')
% cfg.layout = specification of the layout, see FT_PREPARE_LAYOUT
% cfg.foi ... |
github | philippboehmsturm/antx-master | ft_struct2single.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_struct2single.m | 2,973 | utf_8 | c154a80ca65e233f13e2245801ed532a | function [x] = ft_struct2single(x, maxdepth);
% FT_STRUCT2SINGLE converts all double precision numeric data in a structure
% into single precision, which takes up half the amount of memory compared
% to double precision. It will also convert plain matrices and cell-arrays.
%
% Use as
% x = ft_struct2single(x);
%
% ... |
github | philippboehmsturm/antx-master | ft_datatype_sens.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_datatype_sens.m | 8,876 | utf_8 | 776724d18f8a763419894019a25ee4de | function [sens] = ft_datatype_sens(sens, varargin)
% FT_DATATYPE_SENS describes the FieldTrip structure that represents
% an EEG, ECoG, or MEG sensor array. This structure is commonly called
% "elec" for EEG and "grad" for MEG, or more general "sens" for either
% one.
%
% The structure for MEG gradiometers and/or magn... |
github | philippboehmsturm/antx-master | ft_datatype.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_datatype.m | 7,749 | utf_8 | 975852e96f4caa3ccb50bbbd5f8c5248 | function [type, dimord] = ft_datatype(data, desired)
% FT_DATATYPE determines the type of data represented in a FieldTrip data
% structure and returns a string with raw, freq, timelock source, comp,
% spike, source, volume, dip.
%
% Use as
% [type, dimord] = ft_datatype(data)
% [status] = ft_datatype(data, d... |
github | philippboehmsturm/antx-master | ft_checkconfig.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_checkconfig.m | 24,347 | utf_8 | 545c5f8e319ccf687bd339ea79cbe228 | function [cfg] = ft_checkconfig(cfg, varargin)
% FT_CHECKCONFIG checks the input cfg of the main FieldTrip functions.
%
% 1: It checks whether the cfg contains all the required options, it gives
% a warning when renamed or deprecated options are used, and it makes sure
% no forbidden options are used. If necessary and... |
github | philippboehmsturm/antx-master | ft_determine_coordsys.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_determine_coordsys.m | 11,594 | utf_8 | 02a948edaf44283cf81dfeee7d66f5a6 | function [data] = ft_determine_coordsys(data, varargin)
% FT_DETERMINE_COORDSYS plots a geometrical object, allowing you to perform
% a visual check on the coordinatesystem, the units and on the anatomical
% labels for the coordinate system axes.
%
% Use as
% [dataout] = ft_determine_coordsys(datain, ...)
% where th... |
github | philippboehmsturm/antx-master | ft_selectdata_new.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_selectdata_new.m | 19,469 | utf_8 | bf4cdb4378072b367c7cd985e5c4ecce | function [varargout] = ft_selectdata(cfg, varargin)
% FT_SELECTDATA makes a selection in the input data along specific data
% dimensions, such as channels, time, frequency, trials, etc. It can also
% be used to average the data along each of the specific dimensions.
%
% Use as
% [data] = ft_selectdata_new(cfg, data, ... |
github | philippboehmsturm/antx-master | ft_hastoolbox.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_hastoolbox.m | 21,701 | utf_8 | 04ca07a96e26de4cd2386496621c8d96 | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | philippboehmsturm/antx-master | ft_checkdata.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_checkdata.m | 68,446 | utf_8 | d4ad62d9da37d3069bf84c4d0d5e603a | function [data] = ft_checkdata(data, varargin)
% FT_CHECKDATA checks the input data of the main FieldTrip functions, e.g. whether
% the type of data strucure corresponds with the required data. If neccessary
% and possible, this function will adjust the data structure to the input
% requirements (e.g. change dimord, a... |
github | philippboehmsturm/antx-master | nearest.m | .m | antx-master/xspm8/external/fieldtrip/utilities/nearest.m | 5,600 | utf_8 | 31bee361ec4ba27b1c1a0595b6c40e2d | function [indx] = nearest(array, val, insideflag, toleranceflag)
% NEAREST return the index of an array nearest to a scalar
%
% Use as
% [indx] = nearest(array, val, insideflag, toleranceflag)
%
% The second input val can be a scalar, or a [minval maxval] vector for
% limits selection.
%
% If not specified or if lef... |
github | philippboehmsturm/antx-master | ft_checkopt.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_checkopt.m | 5,140 | utf_8 | 38274e2a1d9d0ac029879a9ec80e61c9 | function opt = ft_checkopt(opt, key, allowedtype, allowedval)
% FT_CHECKOPT does a validity test on the types and values of a configuration
% structure or cell-array with key-value pairs.
%
% Use as
% opt = ft_checkopt(opt, key)
% opt = ft_checkopt(opt, key, allowedtype)
% opt = ft_checkopt(opt, key, allowedtype... |
github | philippboehmsturm/antx-master | ft_struct2double.m | .m | antx-master/xspm8/external/fieldtrip/utilities/ft_struct2double.m | 2,907 | utf_8 | 95c620e84c2559c8b004c80743b12b95 | function [x] = ft_struct2double(x, maxdepth);
% FT_STRUCT2DOUBLE converts all single precision numeric data in a structure
% into double precision. It will also convert plain matrices and
% cell-arrays.
%
% Use as
% x = ft_struct2double(x);
%
% Starting from Matlab 7.0, you can use single precision data in your
% ... |
github | philippboehmsturm/antx-master | printstruct.m | .m | antx-master/xspm8/external/fieldtrip/utilities/printstruct.m | 6,214 | utf_8 | 7d5e93679920b5cd933fb3e92cc3eddd | function str = printstruct(name, val)
% PRINTSTRUCT converts a Matlab structure to text which can be interpreted by MATLAB,
% resulting in the original structure.
%
% Use as
% str = printstruct(val)
% or
% str = printstruct(name, val)
% where "val" is any MATLAB variable, e.g. a scalar, vector, matrix, structure, ... |
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