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github | philippboehmsturm/antx-master | tbx_run_fbi_dicom_dti.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/FBIDicom/tbx_run_fbi_dicom_dti.m | 6,847 | utf_8 | bcd21d678faa8a40b734a5af3de31348 | function out = tbx_run_fbi_dicom_dti(job)
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation results, usually a struct variable.
% tbx_... |
github | philippboehmsturm/antx-master | spm_dpss.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/spectral/spm_dpss.m | 4,266 | utf_8 | f38f5c5d111b9dd2c799242fc07d7e30 | function [E] = spm_dpss (N,NW)
% Compute discrete prolate spheroidal sequences
% FORMAT [E] = spm_dpss (N,NW)
%
% N Length of taper
% NW Product of N and W
%
% E [N x 2NW] matrix containing dpss sequences
% The kth column contains the sequence which
% comprises the length N s... |
github | philippboehmsturm/antx-master | tbx_cfg_vgtbx_Diffusion.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/tbx_cfg_vgtbx_Diffusion.m | 155,387 | utf_8 | 8dd9995d5b6c7f79aa25787c3f08fd63 | function vgtbx_Diffusion = tbx_cfg_vgtbx_Diffusion
% Diffusion toolbox
%_______________________________________________________________________
%
% This toolbox contains various functions related to post-processing of
% diffusion weighted image series in SPM5. Topics include movement
% correction for image time serie... |
github | philippboehmsturm/antx-master | vgtbx_config_Diffusion.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/vgtbx_config_Diffusion.m | 42,826 | utf_8 | eb9604e7277e472a87001e6ff56b0f26 | function varargout = vgtbx_config_Diffusion(varargin)
% Diffusion toolbox
%_______________________________________________________________________
%
% This toolbox contains various functions related to post-processing of
% diffusion weighted image series in SPM5. Topics include movement
% correction for image time se... |
github | philippboehmsturm/antx-master | dti_warp_tensors.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Preprocessing/dti_warp_tensors.m | 16,258 | utf_8 | a6a5a358bf12126d9b28e14f63b80ff1 | function varargout=dti_warp_tensors(bch)
% Apply image reorientation information to diffusion gradients
%
% Batch processing:
% FORMAT dti_warp_tensors(bch)
% ======
% Input argument
% bch struct with fields:
%/*\begin{description}*/
%/*\item[*/ .srcimgs/*]*/ cell array of file names (tensor images
% ... |
github | philippboehmsturm/antx-master | spm_coreg_FAVBS.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/FAVBS/spm_coreg_FAVBS.m | 4,853 | utf_8 | 89628eae19d61819bd45464fb3e8db4c | function spm_coreg_FAVBS(PF,FA_on,opt)
% modified version of spm_coreg_ui.m
% Volkmar Glauche and Siawoosh Mohammadi 10/01/09
%%% begin modification %%%
spm_defaults
global defaults
% if nargin==2 | strcmp(lower(opt),'ui'),
% run_ui(PF,FA_on,defaults.coreg);
% elseif nargin>0 & strcmp(lower(opt),'defaults')... |
github | philippboehmsturm/antx-master | FAVBS_do_the_job.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/FAVBS/FAVBS_do_the_job.m | 11,909 | utf_8 | dd46a423955940aab3381a7642dc51b5 | function out = FAVBS_do_the_job(rVb0, rVFA, rVmean, FA_on, iter, VGstemp)
% function out = FAVBS_do_the_job(rVb0, rVFA, rVmean, FA_on, iter, stemp)
% function out = FAVBS_do_the_job(rVb0, rVFA, rVmean, FA_on, iter, VG)
% Begin VARIABLES
% rVb0 = b0 images
% rVFA = FA images
% rVmean = average of all DW ima... |
github | philippboehmsturm/antx-master | cfg_run_favbs_create_template.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/FAVBS/cfg_run_favbs_create_template.m | 12,282 | utf_8 | 1cff5a75eb5463c0b49ed9bf8d634812 | function varargout = cfg_run_favbs_create_template(cmd, varargin)
% Template function to implement callbacks for an cfg_exbranch. The calling
% syntax is
% varargout = cfg_run_favbs_create_template(cmd, varargin)
% where cmd is one of
% 'run' - out = cfg_run_favbs_create_template('run', job)
% Run a j... |
github | philippboehmsturm/antx-master | norm_spm_FAVBS.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/FAVBS/norm_spm_FAVBS.m | 6,098 | utf_8 | b1fd5e5b601f815b6ad0cf4b592c5322 | function varargout = norm_spm_FAVBS(VG,V,rVmean,FA_on,iter)
% modified version of spm_normalise.m
% Output:
% cell array(s) of normalisation parameter filenames
% ----
% V = resliced images (FA or b0); rVmean = resliced mean
% DWIs
% ----
% Volkmar Glauche and Siawoosh Mohammadi 10/01/09
%spm_defaults
defaults_n.esti... |
github | philippboehmsturm/antx-master | tbxdti_run_favbs_norm.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/FAVBS/tbxdti_run_favbs_norm.m | 12,793 | utf_8 | 943dfad17a02784a50ae1894bdb09547 | function varargout = tbxdti_run_favbs_norm(cmd, varargin)
% Run a sequence of normalisations on DWI/FA data
% varargout = tbxdti_run_favbs_norm(cmd, varargin)
% where cmd is one of
% 'run' - out = tbxdti_run_favbs_norm('run', job)
% Run a job, and return its output argument
% 'vout' - dep = tbxdti... |
github | philippboehmsturm/antx-master | dti_sphere_nb.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Helpers/dti_sphere_nb.m | 3,720 | utf_8 | d0720724fc721f2295c3f7d70f36350e | function varargout = dti_sphere_nb(varargin)
% Proximity of points on a unit sphere to a 6-, 18-, 26-neighbourhood
%
% Batch processing:
% FORMAT bchdefaults = dti_sphere_nb('defaults')
% ======
% returns the default batch structure as described below. This structure
% can be used as a skeleton to fill in necessary va... |
github | philippboehmsturm/antx-master | tensor_gop.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Computations/tensor_gop.m | 1,596 | utf_8 | 58878f4452e9c3192c95c027a88b66c6 | function t = tensor_gop(varargin)
% generalised outer product
% FORMAT t = tensor_gop(u1,u2,...uN)
% ======
% Input arguments
% - u1,..,uN - generating vectors
% or
% - U - udim-by-N matrix of generating vectors U(:,1) ... U(:,N)
% Output argument
% - t - generated tensor
%
% Computes t(i1,i2,...,... |
github | philippboehmsturm/antx-master | dti_eig.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Computations/dti_eig.m | 9,841 | utf_8 | c5451b9b2d2579b6d08b9776b0ad1917 | function varargout=dti_eig(bch)
% Tensor decomposition
%
% Computes eigenvector components, eigenvalues and euler angles (pitch,
% roll, yaw convention) from diffusion tensor data.
% Output image naming convention
%/*\begin{itemize}*/
%/*\item*/ evec1[x,y,z]*IMAGE - components of 1st eigenvector
%/*\item*/ evec2[x,y,... |
github | philippboehmsturm/antx-master | dti_dt_time3.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TimeOfArrival/dti_dt_time3.m | 13,277 | utf_8 | 834fc3ef1b12e2b89986d9c2835347e5 | function varargout=dti_dt_time3(bch)
% Compute time of arrival map for diffusion data
%
% A level set algorithm is used to compute time of arrival maps. Starting
% with a start region, diffusion is simulated by evaluating the
% diffusivity profile at each voxel of a propagating front. The profile
% is computed effic... |
github | philippboehmsturm/antx-master | dti_dt_fzero.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TimeOfArrival/dti_dt_fzero.m | 15,171 | utf_8 | 3d65517f6973f291d7b07a9f851580bb | function [b,fval,exitflag,output] = dti_dt_fzero(x,varargin)
%FZERO Scalar nonlinear zero finding.
% modified by VG from Matlab 6.5 for diffusion modelling:
% hard-coded function to minimise.
%
% X = FZERO(FUN,X0) tries to find a zero of the function FUN near X0.
% FUN accepts real scalar input X and returns... |
github | philippboehmsturm/antx-master | dti_evec_time3.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TimeOfArrival/dti_evec_time3.m | 13,671 | utf_8 | 7a81df6fbc32eab4606e9ee08607fd64 | function dti_evec_time3(varargin)
% Compute time of arrival map for diffusion data
%
% References:
% [Set96] Sethian, James A. A Fast Marching Level Set Method for
% Monotonically Advancing Fronts. Proceedings of the National
% Academy of Sciences, USA, 93(4):1591 -- 1595, 1996.
%
% FORMA... |
github | philippboehmsturm/antx-master | dti_dw_wmean_review.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Visualisation/dti_dw_wmean_review.m | 14,022 | utf_8 | 5b57fd0970a0906497c1e37170a64be5 | function varargout = dti_dw_wmean_review(cmd,varargin)
% Compare image series to (weighted) means using a GUI
if ischar(cmd)
switch lower(cmd)
case 'run'
spm('pointer','watch');
job = local_getjob(varargin{1});
% do computation, return results in variable out
... |
github | philippboehmsturm/antx-master | dti_surf_decomp.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Visualisation/dti_surf_decomp.m | 2,207 | utf_8 | 83315266d87402226268df29007fff04 | function dti_surf_decomp(D,x,l)
% display a full tensor and its decomposition
SD=zeros(size(D));
nrows = ceil(sqrt(length(l)+2));
ncols = ceil(sqrt(length(l)+2));
while (nrows-1)*ncols >= length(l)+2
nrows = nrows - 1;
end;
order = ndims(D);
[Hind mult iHperm]=dti_dt_order(order);
f = figure;
for k=1:length(... |
github | philippboehmsturm/antx-master | dti_dw_generate.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Simulations/dti_dw_generate.m | 10,420 | utf_8 | 14b2ae9008e16b91cf39091535470a36 | function varargout = dti_dw_generate(bch)
% generate simulated diffusion weighted data
%
% Batch processing:
% FORMAT function dti_dw_generate(bch)
% ======
% Input argument:
% bch struct with fields
%/*\begin{description}*/
%/*\item[*/ .dim/*]*/ [Inf Inf Inf] or [xdim ydim zdim] dimension of output images
%/*\... |
github | philippboehmsturm/antx-master | dti_simu_rot.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Simulations/dti_simu_rot.m | 3,291 | utf_8 | 4713e57a55cb425c81676f9c0eeef50d | function [faD, faMD, divMD, Dsim, rots] = dti_simu_rot(varargin)
% function rots = dti_simu_rot(evals,mxrot,pflag)
%
% evals: mx3 matrix eigenvalues of original tensor (default [1 1 1])
% mxrot: nx1 vector of maximum rotation in degrees
% pflag: plot results? (default no)
%
% This function is part of the diffusion too... |
github | philippboehmsturm/antx-master | dti_run_parcellation.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Parcellation/dti_run_parcellation.m | 8,801 | utf_8 | aad7ce031463c97b5ae2c7ab495e2c1a | function varargout = dti_run_parcellation(cmd, varargin)
% Template function to implement callbacks for an cfg_exbranch. The calling
% syntax is
% varargout = cfg_run_template(cmd, varargin)
% where cmd is one of
% 'run' - out = cfg_run_template('run', job)
% Run a job, and return its output argument
... |
github | philippboehmsturm/antx-master | dti_smarch.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TensorVoting/dti_smarch.m | 6,382 | utf_8 | c5384f80ec0f9295c3d50d433e20b04b | function FV=dti_smarch(n,S,hiS,loS)
%
% This function is part of the diffusion toolbox for SPM5. For general help
% about this toolbox, bug reports, licensing etc. type
% spm_help vgtbx_config_Diffusion
% in the matlab command window after the toolbox has been launched.
%_______________________________________... |
github | philippboehmsturm/antx-master | dti_cmarch.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TensorVoting/dti_cmarch.m | 9,862 | utf_8 | 335a363c4facfc2aad7044da190813f4 | function Lines=dti_cmarch(Vt,S,hiS,loS,minlen)
% Vt: 3-by-1 cell array of volume handles or XDIM-by-YDIM-by-ZDIM arrays of
% vector components for surface normals (represented in VOXEL space)
% S: XDIM-by-YDIM-by-ZDIM array of saliencies (eg. eval1-eval2)
%
% This function is part of the diffusion toolbox for SPM5.... |
github | philippboehmsturm/antx-master | csmarch.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TensorVoting/csmarch.m | 3,759 | utf_8 | 0a717371ecf68cb749a000e5d3a34dc0 | function ret=march
Vt = spm_vol(spm_get(3,'evec1*s*IMAGE','Curve tangents'));
Vt = {Vt(1), Vt(2), Vt(3)};
n = spm_read_vols(spm_vol(spm_get(3,'evec3*s*IMAGE','Surface normals')));
Ev = spm_read_vols(spm_vol(spm_get(3,'eval*s*IMAGE','Eigenvalues')));
St = (Ev(:,:,:,1) - Ev(:,:,:,2));%./Ev(:,:,:,1);
Sn = (Ev(:,:,:,2) -... |
github | philippboehmsturm/antx-master | dti_vote_field.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/TensorVoting/dti_vote_field.m | 6,717 | utf_8 | 3016b3e2520fd95b1ba21413e39c0c8b | function [f, ss] = dti_vote_field(t, varargin);
% changed tensor order to alphabetical convention
%
% This function is part of the diffusion toolbox for SPM5. For general help
% about this toolbox, bug reports, licensing etc. type
% spm_help vgtbx_config_Diffusion
% in the matlab command window after the toolbo... |
github | philippboehmsturm/antx-master | dti_compare.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Comparisons/dti_compare.m | 5,297 | utf_8 | f8d35047719abee9ce3579295637e742 | function dti_compare(job)
% Compare tensors
%
% Determine affine transformation (without shearing) that would map
% tensors voxel-by-voxel to a volume of reference tensors.
%
% This function is part of the diffusion toolbox for SPM5. For general
% help about this toolbox, bug reports, licensing etc. type
% sp... |
github | philippboehmsturm/antx-master | dti_dw_cluster_std_differences.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Comparisons/dti_dw_cluster_std_differences.m | 9,851 | utf_8 | 8b5309280d8bdb0d4bf71b0542fb38e5 | function varargout = dti_dw_cluster_std_differences(cmd, varargin)
% Template function to implement callbacks for an cfg_exbranch. The calling
% syntax is
% varargout = dti_dw_cluster_std_differences(cmd, varargin)
% where cmd is one of
% 'run' - out = dti_dw_cluster_std_differences('run', job)
% Run ... |
github | philippboehmsturm/antx-master | dti_classify.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Comparisons/dti_classify.m | 3,968 | utf_8 | bc5148c48e1e41da6651a82f4df1e273 | function C=dti_classify(job)
% Classify DTI data based on anisotropy and direction of first eigenvector
%
% This function is part of the diffusion toolbox for SPM5. For general
% help about this toolbox, bug reports, licensing etc. type
% spm_help vgtbx_config_Diffusion
% in the matlab command window after the ... |
github | philippboehmsturm/antx-master | dti_dw_wmean_variance.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/Diffusion/Comparisons/dti_dw_wmean_variance.m | 8,189 | utf_8 | fc27520ac5df97767041faecfaee2764 | function varargout = dti_dw_wmean_variance(cmd, varargin)
% Generate a series of weighted mean and variance images from a DWI series
% varargout = dti_dw_wmean_variance(cmd, varargin)
% where cmd is one of
% 'run' - out = dti_dw_wmean_variance('run', job)
% Run a job, and return its output argument
% ... |
github | philippboehmsturm/antx-master | spm_eeg_inv_ecd_DrawDip.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_eeg_inv_ecd_DrawDip.m | 19,836 | utf_8 | c1fb718e9c4d595b873949ad1274953d | function varargout = spm_eeg_inv_ecd_DrawDip(action,varargin)
% Display the dipoles as obtained from the optim routine
%
% Use it with arguments or not:
% - spm_eeg_inv_ecd_DrawDip('Init')
% The routine asks for the dipoles file and image to display
% - spm_eeg_inv_ecd_DrawDip('Init',sdip)
% The routine w... |
github | philippboehmsturm/antx-master | spm_dcm_phase_results.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_dcm_phase_results.m | 4,023 | utf_8 | ebef13805761004edd122059cb98863f | function [DCM] = spm_dcm_phase_results(DCM,Action)
% Results for Dynamic Causal Modeling (DCM) for phase coupling
% FORMAT spm_dcm_phase_results(DCM,Action);
% Action:
% 'Sin(Data) - Region j'
% 'Coupling (As)'
% 'Coupling (Bs)'
%__________________________________________________________________________
% C... |
github | philippboehmsturm/antx-master | spm_fx_mfm.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_fx_mfm.m | 10,959 | utf_8 | 09cfd1e3edc8e5baca7c0a987c5b51b7 | function [f,J,Q] = spm_fx_mfm(x,u,P,M)
% state equations for neural-mass and mean-field models
% FORMAT [f,J,Q] = spm_fx_mfm(x,u,P,M)
%
% x - states and covariances
%
% x{1}(i,j,k) - k-th state of j-th population on i-th source
% i.e., running over sources, pop. and states
% x{2}(:,:,i,j) - covariance... |
github | philippboehmsturm/antx-master | spm_api_erp.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_api_erp.m | 46,323 | utf_8 | 11703ffca3f14fa523b3ddecc5f685f2 | function varargout = spm_api_erp(varargin)
% SPM_API_ERP Application M-file for spm_api_erp.fig
% FIG = SPM_API_ERP launch spm_api_erp GUI.
% SPM_API_ERP('callback_name', ...) invoke the named callback.
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust... |
github | philippboehmsturm/antx-master | spm_dcm_erp_viewspatial.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_dcm_erp_viewspatial.m | 10,619 | utf_8 | 3273ab19ea6a3906d4a70cf5c22b98c8 | function varargout = spm_dcm_erp_viewspatial(varargin)
% SPM_DCM_ERP_VIEWSPATIAL M-file for spm_dcm_erp_viewspatial.fig
% SPM_DCM_ERP_VIEWSPATIAL, by itself, creates a new SPM_DCM_ERP_VIEWSPATIAL or raises the existing
% singleton*.
%
% H = SPM_DCM_ERP_VIEWSPATIAL returns the handle to a new SPM_DCM_ERP_... |
github | philippboehmsturm/antx-master | spm_api_nmm.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_api_nmm.m | 16,055 | utf_8 | 4144c4d41da26bb528f4d79e58415ee9 | function varargout = spm_api_nmm(varargin)
% SPM_API_NMM M-file for spm_api_nmm.fig
% SPM_API_NMM, by itself, creates a new SPM_API_NMM or raises the existing
% singleton*.
%
% H = SPM_API_NMM returns the handle to a new SPM_API_NMM or the handle to
% the existing singleton*.
%
% SPM_API_NMM('C... |
github | philippboehmsturm/antx-master | spm_erp_L.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/dcm_meeg/spm_erp_L.m | 3,838 | utf_8 | d272a989f0e0a3b8dd3f98a941016faa | function [L] = spm_erp_L(P,M)
% returns [projected] lead field L as a function of position and moments
% FORMAT [L] = spm_erp_L(P,M)
% P - model parameters
% M - model specification
% L - lead field
%__________________________________________________________________________
%
% The lead field (L) is constructed usin... |
github | philippboehmsturm/antx-master | spm_eeg_megheadloc.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/MEEGtools/spm_eeg_megheadloc.m | 15,281 | utf_8 | 9bee3f89fa1da54831f841f36e7315b5 | function D = spm_eeg_megheadloc(S)
% Use head localization of CTF to select/reject trials based on head
% position and (optionally) correct the sensor coordinates to correspond to
% the selected trials. The function can be used on a single dataset as well
% as several datasets together. Most of the functionality requir... |
github | philippboehmsturm/antx-master | spm_eeg_fix_ctf_headloc.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/MEEGtools/spm_eeg_fix_ctf_headloc.m | 18,735 | utf_8 | 59b50ccd4a5352cdbd25ef92faa7c2b4 | function D = spm_eeg_fix_ctf_headloc(S)
% Fix head localization data in a continuous CTF dataset with continuous
% head localization. The tracking has to be valid at least some of the time
%
% The functionality requires the original CTF header (read with CTF toolbox)
% to be present (set S.saveorigheader = 1 at convers... |
github | philippboehmsturm/antx-master | spm_eeg_read_bsa.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/MEEGtools/spm_eeg_read_bsa.m | 2,723 | utf_8 | cdc73e063e7cce45ce7704211f74f278 | function sconfounds = spm_eeg_read_bsa(bsa)
% This function reads a definition of spatial confounds from a BESA
% *.bsa file and returns an sconfounds struct with the following fields
% .label - labels of channels
% .coeff - matrix of coefficients (channels x components)
% .bad - logical vector - channels marked as bad... |
github | philippboehmsturm/antx-master | spm_eeg_var_measures.m | .m | antx-master/freiburgLight/matlab/spm8/toolbox/MEEGtools/spm_eeg_var_measures.m | 8,911 | utf_8 | ef5d9fc2cf700622f75d4c6fa1c8c0a7 | function spm_eeg_var_measures
% Function for computing Fourier coherence using Fieldtrip and VAR based directed measures
% using SPM's spectral toolbox, developed by Will Penny.
%
% Disclaimer: this code is provided as an example and is not guaranteed to work
% with data on which it was not tested. If it does not work ... |
github | philippboehmsturm/antx-master | coor2D.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/coor2D.m | 4,007 | utf_8 | f94070275bb14e35788e110abf929115 | function [res, plotind] = coor2D(this, ind, val, mindist)
% returns x and y coordinates of channels in 2D plane
% FORMAT coor2D(this)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak, Laurence Hunt
% $Id: coor2D.m 43... |
github | philippboehmsturm/antx-master | cache.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/cache.m | 754 | utf_8 | 327310c88f9e84a225af302977c46fe6 | function res = cache(this, stuff)
% Method for retrieving/putting stuff from/into the temporary cache
% FORMAT res = cache(obj, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: cache.m 1373 2008-04-11 14:2... |
github | philippboehmsturm/antx-master | path.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/path.m | 558 | utf_8 | 7149045fd0a2ac178f0e2dcaf166b5e0 | function res = path(this, name)
% Method for getting/setting path
% FORMAT res = path(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: path.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
case 1... |
github | philippboehmsturm/antx-master | fname.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/fname.m | 538 | utf_8 | 00404808a43026efada0ed0cb853d259 | function res = fname(this, name)
% Method for getting/setting file name
% FORMAT res = fname(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fname.m 1373 2008-04-11 14:24:03Z spm $
switch nargin
... |
github | philippboehmsturm/antx-master | fnamedat.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/fnamedat.m | 589 | utf_8 | 39857f5d9ecf819f3bc1581bde7009cf | function res = fnamedat(this, name)
% Method for getting/setting file name of data file
% FORMAT res = fnamedat(this, name)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: fnamedat.m 1373 2008-04-11 14:24:03Z s... |
github | philippboehmsturm/antx-master | ftraw.m | .m | antx-master/freiburgLight/matlab/spm8/@meeg/ftraw.m | 1,526 | utf_8 | 02c913aa11fd6acae96a98a5268b2789 | function raw = ftraw(this, memmap)
% Method for converting meeg object to Fieldtrip raw struct
% FORMAT raw = ftraw(this, memmap)
% memmap - 1 (default) memory map the data with file_array
% 0 load the data into memory
% _______________________________________________________________________
% Co... |
github | philippboehmsturm/antx-master | subsasgn.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/subsasgn.m | 4,602 | utf_8 | 0b4cd116c71239ee913cdf7c826c838a | function obj = subsasgn(obj,subs,dat)
% Overloaded subsasgn function for file_array objects.
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: subsasgn.m 4136 2010-12-09 22:22:28Z guillaume $
if isempty(subs)
return;
end... |
github | philippboehmsturm/antx-master | subsref.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/subsref.m | 5,317 | utf_8 | 64728e33af32c06b26b99b74b700f1f5 | function varargout=subsref(obj,subs)
% SUBSREF Subscripted reference
% An overloaded function...
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: subsref.m 4136 2010-12-09 22:22:28Z guillaume $
if isempty(subs), return; e... |
github | philippboehmsturm/antx-master | disp.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/disp.m | 929 | utf_8 | d0546a638c254605a9122a095e4a06ff | function disp(obj)
% Display a file_array object
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: disp.m 4136 2010-12-09 22:22:28Z guillaume $
if numel(struct(obj))>1,
fprintf(' %s object: ', class(obj));
sz =... |
github | philippboehmsturm/antx-master | offset.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/offset.m | 738 | utf_8 | 366c2df9f0b718e446521ec24447d7a8 | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: offset.m 1143 2008-02-07 19:33:33Z ... |
github | philippboehmsturm/antx-master | scl_slope.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/scl_slope.m | 724 | utf_8 | 3da54efdb2422c907f41b13b577c1e11 | function varargout = scl_slope(varargin)
% Format
% For getting the value
% dat = scl_slope(obj)
%
% For setting the value
% obj = scl_slope(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: scl_slope.m 1143 2008-02-0... |
github | philippboehmsturm/antx-master | scl_inter.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/scl_inter.m | 725 | utf_8 | 8beb5c3767db12faab13c212db9a22ee | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: scl_inter.m 1143 2008-02-0... |
github | philippboehmsturm/antx-master | fname.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/fname.m | 688 | utf_8 | a873d5e909b320be0af566b05e301636 | function varargout = fname(varargin)
% Format
% For getting the value
% dat = fname(obj)
%
% For setting the value
% obj = fname(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: fname.m 1143 2008-02-07 19:33:33Z spm ... |
github | philippboehmsturm/antx-master | dim.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/dim.m | 800 | utf_8 | ee81353b13c1dd2f6e5a186f9db0f205 | function varargout = dim(varargin)
% Format
% For getting the value
% dat = dim(obj)
%
% For setting the value
% obj = dim(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: dim.m 1143 2008-02-07 19:33:33Z spm $
if n... |
github | philippboehmsturm/antx-master | permission.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/permission.m | 873 | utf_8 | c058329145646bbcd34aaeffb7184ea9 | function varargout = permission(varargin)
% Format
% For getting the value
% dat = permission(obj)
%
% For setting the value
% obj = permission(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: permission.m 1340 2008-... |
github | philippboehmsturm/antx-master | dtype.m | .m | antx-master/freiburgLight/matlab/spm8/@file_array/private/dtype.m | 2,265 | utf_8 | 0298fb2f4de45f2f789a8a855bf62a2c | function varargout = dtype(varargin)
% Format
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id: dtype.m 1143 2008-02-07 19:33:33Z spm ... |
github | philippboehmsturm/antx-master | spm_cfg_ppi.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_ppi.m | 5,867 | utf_8 | 895e4dae672dbaf9f85422e01a2647f2 | function ppis = spm_cfg_ppi
% SPM Configuration file for PPIs
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_ppi.m 4136 2010-12-09 22:22:28Z guillaume $
% ---------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_preproc.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_preproc.m | 30,016 | utf_8 | b471e8090bf6ae6a44134c195fcdaefb | function preproc = spm_cfg_preproc
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_preproc.m 3124 2009-05-18 08:13:52Z volkm... |
github | philippboehmsturm/antx-master | spm_run_fmri_design.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_fmri_design.m | 11,410 | utf_8 | 966cf5ef726bcdbf52473fdcdd3d3525 | function out = spm_run_fmri_design(job)
% Set up the design matrix and run a design.
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation ... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_grandmean.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_grandmean.m | 2,570 | utf_8 | 41cefba7c2387be2142bfcd23931e054 | function S = spm_cfg_eeg_grandmean
% configuration file for averaging evoked responses
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_grandmean.m 3881 2010-05-07 21:02:57Z vladimir $
% ---------... |
github | philippboehmsturm/antx-master | spm_cfg_dicom.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_dicom.m | 5,587 | utf_8 | bf4d49bb102e084fbe7722b3589b8ea9 | function dicom = spm_cfg_dicom
% SPM Configuration file for DICOM Import
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_dicom.m 4012 2010-07-22 12:45:53Z volkmar $
% ---------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_mfx.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_mfx.m | 7,440 | utf_8 | a686fb62a68adf0ecfec1bc72c9e10de | function mfx = spm_cfg_mfx
% SPM Configuration file for MFX
%______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_mfx.m 4023 2010-07-28 18:41:36Z guillaume $
% ---------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_factorial_design.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_factorial_design.m | 50,375 | utf_8 | ecbb87ccd5528ba75b6b9a85758a9c3b | function factorial_design = spm_cfg_factorial_design
% SPM Configuration file for 2nd-level models
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Will Penny
% $Id: spm_cfg_factorial_design.m 3900 2010-05-25 16:17:13Z guillaume $
%... |
github | philippboehmsturm/antx-master | spm_cfg_con.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_con.m | 33,800 | utf_8 | 79fe74a6a2a79a4f4215918ab982042d | function con = spm_cfg_con
% SPM Configuration file for contrast specification
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_con.m 3993 2010-07-13 11:59:32Z volkmar $
rev = '$Rev: 3993 $';
% -------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_headmodel.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_inv_headmodel.m | 8,264 | utf_8 | bdaa34d7b948462ae8b446b38e7aaf6e | function headmodel = spm_cfg_eeg_inv_headmodel
% configuration file for specifying the head model for source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_headmodel.m 4118 20... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_average.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_average.m | 3,037 | utf_8 | dd74140584689604aeafa61c63166da8 | function S = spm_cfg_eeg_average
% configuration file for M/EEG epoching
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_average.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 3881 $';
D = cfg_... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_fuse.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_fuse.m | 1,316 | utf_8 | f68fede02ad0b7e98d3e5bcffb4067f1 | function S = spm_cfg_eeg_fuse
% configuration file for fusing M/EEG files
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_fuse.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 3881 $';
D = cfg_... |
github | philippboehmsturm/antx-master | spm_cfg_reorient.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_reorient.m | 5,240 | utf_8 | 2ea92b7d5abbfb7cc208d7967030afa3 | function reorient = spm_cfg_reorient
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_reorient.m 4380 2011-07-05 11:27:12Z vo... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_design.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_fmri_design.m | 41,307 | utf_8 | 544e55095f3244947f8aa8b98fd18c93 | function fmri_design = spm_cfg_fmri_design
% SPM Configuration file for fMRI model specification (design only)
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_design.m 637 2011-05-11 09:53:31Z vglauche $
rev = '$R... |
github | philippboehmsturm/antx-master | spm_cfg_voi.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_voi.m | 14,416 | utf_8 | a2ccb5fea6f79b4ec5ddf31f014ce87a | function voi = spm_cfg_voi
% SPM Configuration file for VOIs
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Guillaume Flandin
% $Id: spm_cfg_voi.m 4513 2011-10-07 17:26:41Z guillaume $
% ----------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_defs.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_defs.m | 12,082 | utf_8 | d7106895556ec79d85dcffa5211d3048 | function conf = spm_cfg_defs
% Configuration file for deformation jobs.
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_defs.m 4136 2010-12-09 22:22:28Z guillaume $
hsummary = {[...
'This is a utility ... |
github | philippboehmsturm/antx-master | spm_cfg_coreg.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_coreg.m | 15,295 | utf_8 | d33c81d106b8fca36404ed99f363be34 | function coreg = spm_cfg_coreg
% SPM Configuration file for Coregister
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_coreg.m 4380 2011-07-05 11:27:12Z volkmar $
% -----------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_spm_surf.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_spm_surf.m | 3,180 | utf_8 | bfb0cbe3b4a7af4aec50af905110631c | function spm_surf_node = spm_cfg_spm_surf
% SPM Configuration file
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_spm_surf.m 3081 2009-04-22 20:15:38Z guillaume $
rev = '$Rev: 3081 $';
% ------------------------------... |
github | philippboehmsturm/antx-master | spm_run_voi.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_voi.m | 7,634 | utf_8 | 028d2bd9767100793c0c5af2426d1a0b | function out = spm_run_voi(job)
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation results, usually a struct variable.
%________________... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_merge.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_merge.m | 2,920 | utf_8 | 5724987e1f048f63b75ae6f68520be28 | function S = spm_cfg_eeg_merge
% configuration file for merging of M/EEG files
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel, Volkmar Glauche
% $Id: spm_cfg_eeg_merge.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$R... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_artefact.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_artefact.m | 2,704 | utf_8 | 9be0b57d491daf05b39ef0bb0e836673 | function S = spm_cfg_eeg_artefact
% configuration file for M/EEG artefact detection
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_artefact.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 388... |
github | philippboehmsturm/antx-master | spm_run_fmri_spec.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_fmri_spec.m | 11,586 | utf_8 | 323408725405fe269ac8eb5e2e667b6c | function out = spm_run_fmri_spec(job)
% Set up the design matrix and run a design.
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation re... |
github | philippboehmsturm/antx-master | spm_cfg_realign.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_realign.m | 22,762 | utf_8 | 91e216ef099732fd3b42a4b8561c487c | function realign = spm_cfg_realign
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_realign.m 4152 2011-01-11 14:13:35Z volkm... |
github | philippboehmsturm/antx-master | spm_cfg_smooth.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_smooth.m | 4,201 | utf_8 | 09740f4ae4c4a5c7260951bcb875e841 | function smooth = spm_cfg_smooth
% SPM Configuration file for Smooth
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_smooth.m 3691 2010-01-20 17:08:30Z guillaume $
rev = '$Rev: 3691 $';
% ------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_epochs.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_epochs.m | 3,555 | utf_8 | b602c570d73c2f10fa1a3f0efe68015e | function S = spm_cfg_eeg_epochs
% configuration file for M/EEG epoching
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_epochs.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 3881 $';
D = cfg_fi... |
github | philippboehmsturm/antx-master | spm_cfg_imcalc.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_imcalc.m | 8,938 | utf_8 | 27ef890fb5b522b50c01dd5e37434086 | function imcalc = spm_cfg_imcalc
% SPM Configuration file for ImCalc
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_imcalc.m 4385 2011-07-08 16:53:38Z guillaume $
% ----------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_montage.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_montage.m | 1,898 | utf_8 | 634d67c28180cedd128491a4bb51ecc8 | function S = spm_cfg_eeg_montage
% configuration file for reading montage files
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_montage.m 4212 2011-02-23 17:50:55Z vladimir $
D = cfg_files;
D.tag = ... |
github | philippboehmsturm/antx-master | spm_run_regions.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_regions.m | 8,611 | utf_8 | 9c364ea7e6db98ff80f6e8cd0861f7d3 | function varargout = spm_run_regions(cmd, varargin)
% Batch callback to extract data from a ROI - This is Freiburg specific!!
% varargout = spm_run_regions(cmd, varargin)
% where cmd is one of
% 'run' - out = spm_run_regions('run', job)
% Run extract job. Extracted data are both saved into VOI .mat
% ... |
github | philippboehmsturm/antx-master | spm_run_fmri_data.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_fmri_data.m | 2,029 | utf_8 | 1c5c4ccd6eaa0935710083844d6d4453 | function out = spm_run_fmri_data(job)
% Set up the design matrix and run a design.
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation re... |
github | philippboehmsturm/antx-master | spm_cfg_cdir.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_cdir.m | 1,931 | utf_8 | b1ea39d134d41d865c66dcc2fe876c30 | function cdir = spm_cfg_cdir
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_cdir.m 1295 2008-04-02 14:31:24Z volkmar $
rev... |
github | philippboehmsturm/antx-master | spm_run_preproc.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_preproc.m | 2,209 | utf_8 | 6527bf563f7e57ac5f3cc404fa7e12ce | function out = spm_run_preproc(job)
% SPM job execution function
% takes a harvested job data structure and call SPM functions to perform
% computations on the data.
% Input:
% job - harvested job data structure (see matlabbatch help)
% Output:
% out - computation results, usually a struct variable.
%____________... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_filter.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_filter.m | 2,437 | utf_8 | a82fcc280506266a693b6e8d2b0ff67f | function S = spm_cfg_eeg_filter
% configuration file for EEG Filtering
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_filter.m 4212 2011-02-23 17:50:55Z vladimir $
rev = '$Rev: 4212 $';
D = cfg_fil... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_bc.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_bc.m | 2,077 | utf_8 | cd9810ba021ab48f80a52d739c741c00 | function S = spm_cfg_eeg_bc
% configuration file for baseline correction
%__________________________________________________________________________
% Copyright (C) 2009 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_bc.m 3818 2010-04-13 14:36:31Z vladimir $
%-----------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_review.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_review.m | 780 | utf_8 | 53451e3a49cf80ec8eabbec3f903689a | function S = spm_cfg_eeg_review
% configuration file for M/EEG reviewing tool
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_review.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 3881 $';... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_tf.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_tf.m | 3,334 | utf_8 | d3bf9980666e47b4f76cce8420c31fb6 | function S = spm_cfg_eeg_tf
% configuration file for M/EEG time-frequency analysis
%__________________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_tf.m 4257 2011-03-18 15:28:29Z vladimir $
rev = '$Rev: 4257 $'... |
github | philippboehmsturm/antx-master | spm_cfg_ecat.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_ecat.m | 2,223 | utf_8 | bf0ab8263e35bd042da8e4331a6ef6ba | function ecat = spm_cfg_ecat
% SPM Configuration file for ECAT Import
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_ecat.m 3691 2010-01-20 17:08:30Z guillaume $
rev = '$Rev: 3691 $';
% -------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_realignunwarp.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_realignunwarp.m | 35,630 | utf_8 | 1d4f758948fa9a2af3f66637e97f5b84 | function realignunwarp = spm_cfg_realignunwarp
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_realignunwarp.m 4152 2011-01-... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_downsample.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_downsample.m | 1,627 | utf_8 | b15f0a9d9a0b53425bd6ba4bc8d7a13e | function S = spm_cfg_eeg_downsample
% configuration file for M/EEG downsampling
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_downsample.m 3881 2010-05-07 21:02:57Z vladimir $
rev = '$Rev: 3881 $'... |
github | philippboehmsturm/antx-master | spm_latex_cfg.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_latex_cfg.m | 6,676 | utf_8 | a47b123dac969fa8a766913b882670a1 | function spm_latex_cfg(c)
% Convert a job configuration tree into a series of LaTeX documents
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_latex_cfg.m 3934 2010-06-17 14:58:25Z guillaume $
if ~nargin... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_convert.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_convert.m | 7,130 | utf_8 | 9bf1bea2b0e3690b8d396162b76d4d33 | function S = spm_cfg_eeg_convert
% configuration file for data conversion
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_convert.m 3881 2010-05-07 21:02:57Z vladimir $
dataset = cfg_files;
dataset.... |
github | philippboehmsturm/antx-master | spm_cfg_cat.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_cat.m | 2,707 | utf_8 | 51b661dca39a9275dd0e770ae9c3cc6c | function cat = spm_cfg_cat
% SPM Configuration file for 3D to 4D volumes conversion
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: spm_cfg_cat.m 3613 2009-12-04 18:47:59Z guillaume $
%---------------------... |
github | philippboehmsturm/antx-master | spm_cfg_minc.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_minc.m | 3,433 | utf_8 | db7b8cb0f154a59326a8d72eafdb6d94 | function minc = spm_cfg_minc
% SPM Configuration file for MINC Import
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_minc.m 3691 2010-01-20 17:08:30Z guillaume $
rev = '$Rev: 3691 $';
% -------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_tf_rescale.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_tf_rescale.m | 6,005 | utf_8 | 692deed1fb1ca3d56ae284ba0ae3850b | function S = spm_cfg_eeg_tf_rescale
% configuration file for rescaling spectrograms
%__________________________________________________________________________
% Copyright (C) 2009 Wellcome Trust Centre for Neuroimaging
% Will Penny
% $Id: spm_cfg_eeg_tf_rescale.m 4287 2011-04-04 13:55:54Z vladimir $
%---------------... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_data.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_fmri_data.m | 3,059 | utf_8 | 12045b3c567f606b6bfd8daba94e14d2 | function fmri_data = spm_cfg_fmri_data
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_data.m 1517 2008-04-29 15:46:08Z... |
github | philippboehmsturm/antx-master | spm_cfg_movefile.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_movefile.m | 2,778 | utf_8 | 3aed73b31c1eefbf725dd13633890907 | function movefile = spm_cfg_movefile
% SPM Configuration file for move file function
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_movefile.m 1827 2008-06-16 13:54:37Z guillaume $
% ----------------------------------... |
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