plateform stringclasses 1
value | repo_name stringlengths 13 113 | name stringlengths 3 74 | ext stringclasses 1
value | path stringlengths 12 229 | size int64 23 843k | source_encoding stringclasses 9
values | md5 stringlengths 32 32 | text stringlengths 23 843k |
|---|---|---|---|---|---|---|---|---|
github | philippboehmsturm/antx-master | spm_cfg_fmri_spec.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_fmri_spec.m | 42,012 | utf_8 | 7692832cbcb1b1b77dff681c2a7319f9 | function fmri_spec = spm_cfg_fmri_spec
% SPM Configuration file for fMRI model specification
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_spec.m 637 2011-05-11 09:53:31Z vglauche $
rev = '$Rev: 637 $';
% ------... |
github | philippboehmsturm/antx-master | spm_cfg_bms.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_bms.m | 26,212 | utf_8 | e9c005333a71f641ae7d9147b7144d8d | function bms = spm_cfg_bms
% Configuration file for BMS interface.
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Maria Joao Rosa
% $Id: spm_cfg_bms.m 3955 2010-06-29 17:26:29Z maria $
% -------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_convert2images.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_convert2images.m | 1,533 | utf_8 | 278f08c7b6bc00ad2186e3d343a12b7c | function S = spm_cfg_eeg_convert2images
% configuration file for writing voxel-based images from SPM M/EEG format,
% as a time-series of 2Dimages
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_conve... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_results.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_inv_results.m | 3,226 | utf_8 | 4785178456ae76c108a54bc2b56a776c | function results = spm_cfg_eeg_inv_results
% configuration file for creating images from results of source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_results.m 3976 2010-0... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_contrast.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_contrast.m | 2,514 | utf_8 | 5ef4acc26bd25c57a355ebd077aecc82 | function S = spm_cfg_eeg_contrast
% configuration file for computing contrast over epochs
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% Stefan Kiebel
% $Id: spm_cfg_eeg_contrast.m 3881 2010-05-07 21:02:57Z vladimir $
D = cfg_file... |
github | philippboehmsturm/antx-master | spm_cfg_checkreg.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_checkreg.m | 2,265 | utf_8 | c81f7c3223052066b263026099947cec | function checkreg = spm_cfg_checkreg
% SPM Configuration file for Check Reg
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_checkreg.m 4205 2011-02-21 15:39:08Z guillaume $
%-----------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_deletefiles.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_deletefiles.m | 2,302 | utf_8 | 8fd0b19822b9648162bb473b9dbe360f | function deletefiles = spm_cfg_deletefiles
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_deletefiles.m 2222 2008-09-29 11:... |
github | philippboehmsturm/antx-master | spm_cfg_md.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_md.m | 1,974 | utf_8 | 7596c832b50c0ecadcf8ef562069a262 | function md = spm_cfg_md
% SPM Configuration file for making directory function
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_md.m 1827 2008-06-16 13:54:37Z guillaume $
% ---------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_normalise.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_normalise.m | 25,506 | utf_8 | a01a87d691294117634f2d14d848977e | function normalise = spm_cfg_normalise
% SPM Configuration file
% automatically generated by the MATLABBATCH utility function GENCODE
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_normalise.m 3804 2010-03-31 16:16:21Z... |
github | philippboehmsturm/antx-master | spm_run_check_reg_adv.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_run_check_reg_adv.m | 7,221 | utf_8 | c6c96f98231a4807166f63e0998bed82 | function varargout = spm_run_check_reg_adv(cmd, varargin)
% Template function to implement callbacks for an cfg_exbranch. The calling
% syntax is
% varargout = spm_run_check_reg_adv(cmd, varargin)
% where cmd is one of
% 'run' - out = spm_run_check_reg_adv('run', job)
% Run a job, and return its outpu... |
github | philippboehmsturm/antx-master | spm_cfg_disp.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_disp.m | 4,719 | utf_8 | 9f6f5adf2e1375a3f6df5d5daeb54bae | function disp = spm_cfg_disp
% SPM Configuration file for Image Display
%__________________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_disp.m 4205 2011-02-21 15:39:08Z guillaume $
%-------------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_st.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_st.m | 8,731 | utf_8 | 16a36edc715d472d387db03f6733781d | function st = spm_cfg_st
% SPM Configuration file for Slice Timing Correction
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_st.m 4269 2011-03-29 16:03:43Z guillaume $
% -----------------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_invert.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_inv_invert.m | 7,820 | utf_8 | d768c9182c47d6daeccc44b246268094 | function invert = spm_cfg_eeg_inv_invert
% configuration file for configuring imaging source inversion
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2010 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_invert.m 4326 2011-05-13 ... |
github | philippboehmsturm/antx-master | spm_cfg_eeg_inv_extract.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_eeg_inv_extract.m | 3,307 | utf_8 | 42d3e193e87fc5b983a7382f3f7d68e4 | function extract = spm_cfg_eeg_inv_extract
% configuration file for extracting source data from imaging source
% reconstruction
%_______________________________________________________________________
% Copyright (C) 2011 Wellcome Trust Centre for Neuroimaging
% Vladimir Litvak
% $Id: spm_cfg_eeg_inv_extract.m 4257 20... |
github | philippboehmsturm/antx-master | spm_cfg_fmri_est.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_fmri_est.m | 24,501 | utf_8 | 14607a45526013760c39408f23f0d2fa | function fmri_est = spm_cfg_fmri_est
% SPM Configuration file for Model Estimation
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_fmri_est.m 3753 2010-03-05 13:06:47Z guillaume $
% ------------------------------------... |
github | philippboehmsturm/antx-master | spm_cfg_plot_fdmar.m | .m | antx-master/freiburgLight/matlab/spm8/config/spm_cfg_plot_fdmar.m | 1,538 | utf_8 | 53838da078ffd2b340d1746a4ec0f674 | function cfg = spm_cfg_plot_fdmar
spmmat = cfg_files;
spmmat.name = 'SPM.mat file';
spmmat.tag = 'spmmat';
spmmat.num = [1 1];
spmmat.filter = '^SPM.mat$';
spmmat.help = {'Select SPM.mat file.'};
%spmmat.check = @has_arfit;
ana = cfg_const;
ana.name = 'SPM analysis mask';
ana.tag = 'ana';
ana.v... |
github | philippboehmsturm/antx-master | paint.m | .m | antx-master/freiburgLight/matlab/spm8/@slover/paint.m | 10,669 | utf_8 | 58c77775943c79df7da192623addf239 | function obj = paint(obj, params)
% method to display slice overlay
% FORMAT paint(obj, params)
%
% Inputs
% obj - slice overlay object
% params - optional structure containing extra display parameters
% - refreshf - overrides refreshf in object
% - clf - overrides clf in... |
github | philippboehmsturm/antx-master | pr_basic_ui.m | .m | antx-master/freiburgLight/matlab/spm8/@slover/private/pr_basic_ui.m | 3,679 | utf_8 | 88d91189a824825f094d4979cbdc7fb4 | function obj = pr_basic_ui(imgs, dispf)
% GUI to request parameters for slover routine
% FORMAT obj = pr_basic_ui(imgs, dispf)
%
% GUI requests choices while accepting many defaults
%
% imgs - string or cell array of image names to display
% (defaults to GUI select if no arguments passed)
% dispf - optional fl... |
github | philippboehmsturm/antx-master | delete.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/delete.m | 1,203 | utf_8 | f523d5fa52766f6af01c283da5bb87bf | function tree = delete(tree,uid)
% XMLTREE/DELETE Delete (delete a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be deleted
%_______________________________________________________________________
%
% Delete a subtree given its UID
% The tree parameter must be in inp... |
github | philippboehmsturm/antx-master | save.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/save.m | 5,121 | utf_8 | fa70739c5d89fa5e5759fe4d0dd5d1b3 | function varargout = save(tree, filename)
% XMLTREE/SAVE Save an XML tree in an XML file
% FORMAT varargout = save(tree,filename)
%
% tree - XMLTree
% filename - XML output filename
% varargout - XML string
%_______________________________________________________________________
%
% Convert an XML tree into a wel... |
github | philippboehmsturm/antx-master | branch.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/branch.m | 1,763 | utf_8 | f109760669fd1d0e0de8fc92a2a29e7d | function subtree = branch(tree,uid)
% XMLTREE/BRANCH Branch Method
% FORMAT uid = parent(tree,uid)
%
% tree - XMLTree object
% uid - UID of the root element of the subtree
% subtree - XMLTree object (a subtree from tree)
%_______________________________________________________________________
%
% Return a subtr... |
github | philippboehmsturm/antx-master | flush.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/flush.m | 1,426 | utf_8 | fe4b3a9c9e324178be9b06001c9fec8f | function tree = flush(tree,uid)
% XMLTREE/FLUSH Flush (Clear a subtree given its UID)
%
% tree - XMLTree object
% uid - array of UID's of subtrees to be cleared
% Default is root
%_______________________________________________________________________
%
% Clear a subtree given its UID (remove al... |
github | philippboehmsturm/antx-master | copy.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/copy.m | 1,644 | utf_8 | 8cbde6d7d6e761ad86ecb0379b54b269 | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%______________________________________... |
github | philippboehmsturm/antx-master | convert.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/convert.m | 5,612 | utf_8 | c2c0cfe54bad9ce85b1cccc7c53acfce | function s = convert(tree,uid)
% XMLTREE/CONVERT Converter an XML tree in a Matlab structure
%
% tree - XMLTree object
% uid - uid of the root of the subtree, if provided.
% Default is root
% s - converted structure
%_______________________________________________________________________... |
github | philippboehmsturm/antx-master | editor.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/editor.m | 12,428 | utf_8 | 6344af0067d2405a13d1dabf8e96efc3 | function editor(tree)
%XMLTREE/EDITOR A Graphical User Interface for an XML tree
% EDITOR(TREE) opens a new Matlab figure displaying the xmltree
% object TREE.
% H = EDITOR(TREE) also returns the figure handle H.
%
% This is a beta version of <xmltree/view> successor
%
% See also XMLTREE
%_________________________... |
github | philippboehmsturm/antx-master | find.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/find.m | 5,904 | utf_8 | f06a6b831a6222020bfa34df1176ccaa | function list = find(varargin)
% XMLTREE/FIND Find elements in a tree with specified characteristics
% FORMAT list = find(varargin)
%
% tree - XMLTree object
% xpath - string path with specific grammar (XPath)
% uid - lists of root uid's
% parameter/value - pair of pattern
% list - list of uid's of matched elements... |
github | philippboehmsturm/antx-master | xml_parser.m | .m | antx-master/freiburgLight/matlab/spm8/@xmltree/private/xml_parser.m | 16,122 | utf_8 | e9c0fb44fd5c086cab09c4df5a6e0087 | function tree = xml_parser(xmlstr)
% XML (eXtensible Markup Language) Processor
% FORMAT tree = xml_parser(xmlstr)
%
% xmlstr - XML string to parse
% tree - tree structure corresponding to the XML file
%_______________________________________________________________________
%
% xml_parser.m is an XML 1.0 (http://ww... |
github | philippboehmsturm/antx-master | save.m | .m | antx-master/freiburgLight/matlab/spm8/@gifti/save.m | 20,878 | utf_8 | 9dda5745b44a50e7b47d1885c7e30435 | function save(this,filename,encoding)
% Save GIfTI object in a GIfTI format file
% FORMAT save(this,filename)
% this - GIfTI object
% filename - name of GIfTI file to be created [Default: 'untitled.gii']
% encoding - optional argument to specify encoding format, among
% ASCII, Base64Binary, GZipBase6... |
github | philippboehmsturm/antx-master | gifti.m | .m | antx-master/freiburgLight/matlab/spm8/@gifti/gifti.m | 3,622 | utf_8 | 770f3ed1f17658bff49edbacd0062416 | function this = gifti(varargin)
% GIfTI Geometry file format class
% Geometry format under the Neuroimaging Informatics Technology Initiative
% (NIfTI):
% http://www.nitrc.org/projects/gifti/
% http://nifti.nimh.nih.gov/
%_____________________________________________________________... |
github | philippboehmsturm/antx-master | read_gifti_file.m | .m | antx-master/freiburgLight/matlab/spm8/@gifti/private/read_gifti_file.m | 6,672 | utf_8 | 6b1ffd0854407b6710a55c2345f19d7e | function this = read_gifti_file(filename, this)
% Low level reader of GIfTI 1.0 files
% FORMAT this = read_gifti_file(filename, this)
% filename - XML GIfTI filename
% this - structure with fields 'metaData', 'label' and 'data'.
%__________________________________________________________________________
% Cop... |
github | philippboehmsturm/antx-master | isintent.m | .m | antx-master/freiburgLight/matlab/spm8/@gifti/private/isintent.m | 2,094 | utf_8 | 558a3aa4dffb45d067e660999e803050 | function [a, b] = isintent(this,intent)
% Correspondance between fieldnames and NIfTI intents
% FORMAT ind = isintent(this,intent)
% this - GIfTI object
% intent - fieldnames
% a - indices of found intent(s)
% b - indices of dataarrays of found intent(s)
%____________________________________________... |
github | philippboehmsturm/antx-master | mne_load_coil_def.m | .m | antx-master/freiburgLight/matlab/spm8/external/mne/mne_load_coil_def.m | 8,644 | utf_8 | 772b6afb3be6c17199d073e9078d092f | function [CoilDef,Header] = mne_load_coil_def(fname);
%
%
% [CoilDef,Header] = mne_load_coil_def(fname);
% CoilDef = mne_load_coil_def(fname);
%
% If file name is not specified, the standard coil definition file
% $MNE_ROOT/setup/mne/coil_def.dat or $MNE_ROOT/share/mne/coil_def.dat is read
%
% The co... |
github | philippboehmsturm/antx-master | fiff_find_evoked.m | .m | antx-master/freiburgLight/matlab/spm8/external/mne/fiff_find_evoked.m | 2,846 | utf_8 | f7c5e4fd4395754f0e87d3fe6e984d62 | function [data_sets] = fiff_find_evoked(fname)
%
% [data_sets] = fiff_find_evoked(fname)
%
% Find all evoked data sets in a fif file and create a list of descriptors
%
%
% Author : Matti Hamalainen, MGH Martinos Center
% License : BSD 3-clause
%
global FIFF;
if isempty(FIFF)
FIFF = fiff_define_constants();
e... |
github | philippboehmsturm/antx-master | bemcp_example.m | .m | antx-master/freiburgLight/matlab/spm8/external/bemcp/bemcp_example.m | 21,651 | utf_8 | 253b283a3e15ed5e68f2c888f37b65ff |
function bemcp_example
% Simple function to test/demonstrate how the Boundary element functions are
% used in combination with Fildtrip/Forwinv routines.
%
% 1. A model is created as 3 concentric meshed spheres (using FT's
% icosahedron routines),
% 2. then random electrodes are placed on the upper part of the outer... |
github | philippboehmsturm/antx-master | writeCPersist.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/writeCPersist.m | 5,086 | utf_8 | 0c56dc571aa56100f050678e5fe815ff | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%% Function writeCPersist %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function writeCPersist(filename,Tag)
% Version 1.2 24 April 2007. Removed terminating null characters from charatcer strings
% ... |
github | philippboehmsturm/antx-master | getCTFBalanceCoefs.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/getCTFBalanceCoefs.m | 20,490 | utf_8 | 2c434fcbdb53fbc50ee3fbda72e98883 | function [alphaMEG,MEGindex,MEGbalanceindex,alphaGref,Grefindex,Gbalanceindex]=...
getCTFBalanceCoefs(ds,balanceType,unit);
% Reads balance coefficients for SQUID data in phi0's, and converts to coefficients
% for data in physical units.
% Input : ds : (1) ds structure from readCTFds
% balanceType : 'N... |
github | philippboehmsturm/antx-master | writeCTFds.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/writeCTFds.m | 68,946 | utf_8 | 96615f4833d69490d5b3e47f6f86c538 | function ds=writeCTFds(datasetname,ds,data,unit);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %
% ... |
github | philippboehmsturm/antx-master | writeRes4.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/writeRes4.m | 8,560 | utf_8 | 416bc2b62624835c63140e54415d2f49 | function res4=writeRes4(res4File,res4,MAX_COILS);
% Write the new .res4 file. Use ieee-be (big endian) format
% Character-string output is done using function writeCTFstring which
% checks that strings are the correct length for the .res4 file format.
% Function calls: - writeCTFstring (included in this listing).... |
github | philippboehmsturm/antx-master | addCTFtrial.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/addCTFtrial.m | 51,483 | utf_8 | b59730fdb231f07741e7e87dea9e6c1c | function cntrl=addCTFtrial(datasetname,data,unit,mrk,cls,badSegments);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% This program creates datasets that can be analyzed by CTF software. %... |
github | philippboehmsturm/antx-master | setCTFDataBalance.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/setCTFDataBalance.m | 32,056 | utf_8 | 894c3744554abe635876ce6944dca0cd | function [data,ds]=setCTFDataBalance(data,ds,balance1,unit,chanList,messages);
% Version 1.1 13 April 2007 Mod to chanList: If chanList is omitted and
% size(data,2)<ds.res4.no_channels, then setCTFDataBalance
% sets chanList=1:size(data,2) and prints a war... |
github | philippboehmsturm/antx-master | writeCTFMRI.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/writeCTFMRI.m | 8,517 | utf_8 | c6bdbc15d67e3621b8109f6b399f5eae | function writeCTFMRI(fileName,MRItags,MRIdata);
% Version 1.2 25 April 2007 Module writeCPersist changed, and removed from this text
% file.
% Version 1.1 19 April 2007 : No changes from v1.0
% Version 1.0 27 Oct. 2006
% Write a CTF MRI in v4 format.
% For file format and a def... |
github | philippboehmsturm/antx-master | readCTFds.m | .m | antx-master/freiburgLight/matlab/spm8/external/ctf/readCTFds.m | 36,336 | utf_8 | 4526ccf95cbee4b0f46584ff977b80ba | function ds=readCTFds(datasetname)
% ************************************************************************
%
% This program is provided to users of CTF MEG systems as a courtesy only.
% It's operation has not been verified for clinical use.
% Please do not redistribute it without permission from CTF Systems I... |
github | philippboehmsturm/antx-master | ft_artifact_manual.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_artifact_manual.m | 18,495 | utf_8 | 532b06f68db8ce590b675f50faa4380e | function [cfg, artifact] = ft_artifact_manual(cfg);
% THIS FUNCTION IS DEPRECIATED, USE FT_REJECTVISUAL INSTEAD
%
% FT_ARTIFACT_MANUAL allows the user to detect artifacts manually using visual
% inspection.
%
% Use as:
% [cfg, artifact] = ft_artifact_manual(cfg)
% required configuration options:
% cfg.dataset o... |
github | philippboehmsturm/antx-master | ft_prepare_layout.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_prepare_layout.m | 26,587 | utf_8 | 117888be4827d20a2f38900a75e94637 | function [lay] = ft_prepare_layout(cfg, data)
% FT_PREPARE_LAYOUT creates a 2-D layout of the channel locations. This layout
% is required for plotting the topographical distribution of the potential
% or field distribution, or for plotting timecourses in a topographical
% arrangement.
%
% Use as
% lay = ft_prepare_... |
github | philippboehmsturm/antx-master | ft_spike_triggeredspectrum.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_triggeredspectrum.m | 15,754 | utf_8 | e32c9544218da94d42d8ff2acd4ec6f5 | function [freq] = ft_spike_triggeredspectrum(cfg, data, spike)
% FT_SPIKE_TRIGGEREDSPECTRUM computes the Fourier spectrup of the LFP around the spikes.
%
% When spikes have binary representation, as obtained from APPENDSPIKE or FT_SPIKE_SPIKE2DATA, use
% [freq] = spiketriggeredspectrum(cfg, data)
% When spikes from ... |
github | philippboehmsturm/antx-master | ft_freqbaseline.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_freqbaseline.m | 7,075 | utf_8 | 4dcbe7bcd54a8553f75b2a5fc67d4c45 | function [freqOut] = ft_freqbaseline(cfg, freq)
% FT_FREQBASELINE performs baseline normalization for time-frequency data
%
% Use as
% [freq] = ft_freqbaseline(cfg, freq)
% where the freq data comes from FT_FREQANALYSIS and the configuration
% should contain
% cfg.baseline = [begin end] (default = 'no')
% c... |
github | philippboehmsturm/antx-master | ft_spike_psth.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_psth.m | 12,255 | utf_8 | df3235e096d34b7c5dab6c7fe244a8a1 | function [psth] = ft_spike_psth(cfg,spike)
% FT_SPIKE_PSTH computes the peristimulus histogram of spiketrains.
%
% Use as
% [PSTH] = FT_SPIKE_PSTH(CFG,SPIKE)
%
% The input SPIKE should be organised as:
% The SPIKE datatype, obtained from FT_SPIKE_DATA2SPIKE or
% FT_SPIKE_MAKETRIALS.
%
% Configurations options:... |
github | philippboehmsturm/antx-master | ft_sourceinterpolate.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sourceinterpolate.m | 18,752 | utf_8 | 19e7fac5cb7784e717324357e8b95815 | function [interp] = ft_sourceinterpolate(cfg, functional, anatomical)
% FT_SOURCEINTERPOLATE reslices and interpolates a source reconstruction
% or a statistical distribution as an overlay onto an anatomical MRI.
%
% Both the functional data and the anatomical data can either describe a
% 3-dimensional volume, an arbi... |
github | philippboehmsturm/antx-master | ft_megplanar.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_megplanar.m | 13,770 | utf_8 | a0374c6a05ac11b0542b63351812b05c | function [interp] = ft_megplanar(cfg, data)
% FT_MEGPLANAR computes planar MEG gradients gradients for raw data
% obtained from FT_PREPROCESSING or an average ERF that was computed using
% FT_TIMELOCKANALYSIS. It can also work on data in the frequency domain,
% obtained with FREQANALYSIS. Prerequisite for this is that... |
github | philippboehmsturm/antx-master | ft_volumerealign.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_volumerealign.m | 20,951 | utf_8 | d1ad8363bae8b0ea6ebc4bad08d6d197 | function [mri] = ft_volumerealign(cfg, mri)
% FT_VOLUMEREALIGN spatially aligns an anatomical MRI with head coordinates based on
% external fiducials or anatomical landmarks. This function does not change the
% volume itself, but adjusts the homogeneous transformation matrix that describes
% the coordinate system.
%
%... |
github | philippboehmsturm/antx-master | ft_qualitycheck.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_qualitycheck.m | 26,394 | utf_8 | 9352272d7862a9702b7cf92f071cf8c0 | function [varargout] = ft_qualitycheck(cfg)
% FT_QUALITYCHECK facilitates quality inspection of a dataset. 1) The data is
% analyzed, quantified, and stored in a .mat file in a timelock- and
% freq- like fashion. 2) The quantifications are visualized and exported to
% a .PNG and .PDF file.
%
% In case the data is MEG ... |
github | philippboehmsturm/antx-master | ft_denoise_pca.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_denoise_pca.m | 16,221 | utf_8 | ca602a310a7e0a8f6d90d988eef7ee81 | function [data, pca, stdpre, stdpst] = ft_denoise_pca(cfg, varargin)
% DENOISE_PCA performs a pca on specified reference channels and subtracts
% the projection of the data of interest onto this orthogonal basis from
% the data of interest. This is the algorithm which is applied by 4D to
% compute noise cancellation... |
github | philippboehmsturm/antx-master | ft_sensorrealign.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sensorrealign.m | 31,808 | utf_8 | d579e892f804b2535ec8664491e736c5 | function [elec_realigned] = ft_sensorrealign(cfg, elec_original)
% FT_SENSORREALIGN rotates and translates electrode and gradiometer
% sensor positions to template electrode positions or towards the head
% surface. It can either perform a rigid body transformation, in which only
% the coordinate system is changed, or ... |
github | philippboehmsturm/antx-master | ft_spike_data2spike.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_data2spike.m | 4,689 | utf_8 | 1519e77ecd52978f98a93437ee57a7d2 | function [spike] = ft_spike_data2spike(cfg,data)
% FT_SPIKE_DATA2SPIKE converts a continuous spikestation DATA structure to a point
% representation of the data in a spikestation SPIKE structure.
%
% Configurations options (CFG):
%
% Configuration options related to selection of spike channel and trials:
%
% cfg.s... |
github | philippboehmsturm/antx-master | ft_databrowser.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_databrowser.m | 51,564 | utf_8 | bbe291a12d02c5fbf5eb26906a44cbe5 | function [cfg] = ft_databrowser(cfg, data)
% FT_DATABROWSER can be used for visual inspection of data. Artifacts that were detected
% by artifact functions (see FT_ARTIFACT_xxx functions where xxx is the type of artifact)
% are marked. Additionally data pieces can be marked and unmarked as artifact by
% manual selecti... |
github | philippboehmsturm/antx-master | ft_singleplotER.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_singleplotER.m | 24,509 | utf_8 | b68b1345c22cb3b2deb537b1c49bc458 | function [cfg] = ft_singleplotER(cfg, varargin)
% ft_singleplotER plots the event-related fields or potentials of a single channel
% or the average over multiple channels. multiple datasets can be overlayed.
%
% use as:
% ft_singleplotER(cfg, data)
% ft_singleplotER(cfg, data1, data2, ..., datan)
%
% the data can ... |
github | philippboehmsturm/antx-master | ft_spikesimulation.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spikesimulation.m | 4,954 | utf_8 | f336f0a180f84b0a80ef24d6bd862640 | function data = ft_spikesimulation(cfg)
% FT_SPIKESIMULATION
%
% Use as
% data = ft_spikesimulation(cfg)
% and please look in the code for the cfg details.
%
% See also FT_DIPOLESIMULATION, FT_FREQSIMULATION
% Copyright (C) 2007, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimagin... |
github | philippboehmsturm/antx-master | ft_analysisprotocol.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_analysisprotocol.m | 11,770 | utf_8 | 3969ed9e334c7c7690a1581f8466046d | function [script, details] = ft_analysisprotocol(cfg, datacfg)
% FT_ANALYSISPROTOCOL tries to reconstruct the complete analysis protocol that
% was used to create an arbitrary FieldTrip data structure. It will create
% a Matlab script (as text file) and a flowchart with a graphical
% representation.
%
% Use as
% ft_... |
github | philippboehmsturm/antx-master | ft_mvaranalysis.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_mvaranalysis.m | 19,679 | utf_8 | f71777fe8c5f884fd1d2671943107b3c | function [mvardata] = ft_mvaranalysis(cfg, data)
% FT_MVARANALYSIS performs multivariate autoregressive modeling on
% time series data over multiple trials.
%
% Use as
% [mvardata] = ft_mvaranalysis(cfg, data)
%
% The input data should be organised in a structure as obtained from
% the FT_PREPROCESSING function. The... |
github | philippboehmsturm/antx-master | ft_databrowser_old.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_databrowser_old.m | 56,720 | utf_8 | 3bc8d11301b8bf813ef8c432cf0c49e3 | function [cfg] = ft_databrowser_old(cfg, data)
% FT_DATABROWSER can be used for visual inspection of data. Artifacts that were detected
% by artifact functions (see FT_ARTIFACT_xxx functions where xxx is the type of artifact)
% are marked. Additionally data pieces can be marked and unmarked as artifact by
% manual sel... |
github | philippboehmsturm/antx-master | ft_volumesegment.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_volumesegment.m | 22,470 | utf_8 | 78a76e125b0adb93d8d39508455d1428 | function [segment] = ft_volumesegment(cfg, mri)
% FT_VOLUMESEGMENT segments an anatomical MRI. The behaviour depends on the
% output requested. It can return probabilistic tissue maps of
% gray/white/csf compartments, a skull-stripped anatomy, or binary masks
% representing the brain surface, skull, or scalp surface.
... |
github | philippboehmsturm/antx-master | ft_sourceplot.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sourceplot.m | 45,118 | utf_8 | 7add1886d3ca1752014d51f9fdaf2071 | function [cfg] = ft_sourceplot(cfg, data)
% FT_SOURCEPLOT plots functional source reconstruction data on slices or on a
% surface, optionally as an overlay on anatomical MRI data, where
% statistical data can be used to determine the opacity of the mask.
% Input data comes from FT_SOURCEANALYSIS, FT_SOURCEGRANDAVERAG... |
github | philippboehmsturm/antx-master | ft_spike_rate.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_rate.m | 9,725 | utf_8 | fae9529146eb80f86cd4594d1ba8325a | function [rate] = ft_spike_rate(cfg,spike)
% FT_SPIKE_RATE computes the firing rate of spiketrains and their variance
%
% Use as
% [RATE] = FT_SPIKE_RATE(CFG,SPIKE)
%
% The input SPIKE should be organised as:
% The SPIKE datatype, obtained from FT_SPIKE_DATA2SPIKE or
% FT_SPIKE_MAKETRIALS.
%
% Configuratio... |
github | philippboehmsturm/antx-master | ft_megrealign.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_megrealign.m | 18,970 | utf_8 | 26effaa10bc2b32a00cc201f2126ce5b | function [interp] = ft_megrealign(cfg, data);
% FT_MEGREALIGN interpolates MEG data towards standard gradiometer locations
% by projecting the individual timelocked data towards a coarse source
% reconstructed representation and computing the magnetic field on
% the standard gradiometer locations.
%
% Use as
% [inte... |
github | philippboehmsturm/antx-master | ft_volumelookup.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_volumelookup.m | 11,255 | utf_8 | 0c598c2c597ea0a8c5584aaa8fed4178 | function [output] = ft_volumelookup(cfg, volume)
% FT_VOLUMELOOKUP can be used in to combine an anatomical or functional
% atlas with source recunstruction. You can use it for forward and reverse
% lookup.
%
% Given the anatomical or functional label, it looks up the locations and
% creates a mask (as a binary volume)... |
github | philippboehmsturm/antx-master | ft_freqanalysis_tfr.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_freqanalysis_tfr.m | 8,844 | utf_8 | 1a8fc9097d265161321abe1a02974fb5 | function [freq] = ft_freqanalysis_tfr(cfg, data);
% FT_FREQANALYSIS_TFR computes time-frequency representations of single-trial
% data using a convolution in the time-domain with Morlet's wavelets.
%
% Use as
% [freq] = ft_freqanalysis(cfg, data)
%
% The data should be organised in a structure as obtained from
% the... |
github | philippboehmsturm/antx-master | ft_multiplotTFR.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_multiplotTFR.m | 27,659 | utf_8 | e73168c92f7898f4de31ba530431bcf3 | function [cfg] = ft_multiplotTFR(cfg, data)
% ft_multiplotTFR plots time-frequency representations of power or coherence in a
% topographical layout. The plots of the indivual sensors are arranged according
% to their location specified in the layout.
%
% Use as:
% ft_multiplotTFR(cfg, data)
%
% The data can be a ... |
github | philippboehmsturm/antx-master | ft_spike_spike2data.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_spike2data.m | 7,855 | utf_8 | 99e4f74cba1a0d29f32d4dbf155682be | function [spikedata] = ft_spikestation_ets2data(cfg,spike,data)
% FT_SPIKESTATION_SPIKE2DATA converts a point representation SPIKE structure to a continuous
% representation DATA structure.
% Use as:
% [data] = ft_spikestation_spike2data(cfg,spike,data)
% or
% [data] = ft_spikestation_spike2data(cfg,spike)
%
% I... |
github | philippboehmsturm/antx-master | ft_connectivityanalysis.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_connectivityanalysis.m | 36,072 | utf_8 | f78d6c55b565a6fd2c80168cc398abca | function [stat] = ft_connectivityanalysis(cfg, data)
% FT_CONNECTIVITYANALYIS computes various measures of connectivity
% between MEG/EEG channels or between source-level signals.
%
% Use as
% stat = ft_connectivityanalysis(cfg, data)
% stat = ft_connectivityanalysis(cfg, timelock)
% stat = ft_connectivityanalys... |
github | philippboehmsturm/antx-master | ft_spiketriggeredspectrum.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spiketriggeredspectrum.m | 10,372 | utf_8 | 265b67d97bf3022ba71efd52ec02f999 | function [freq] = ft_spiketriggeredspectrum(cfg, data)
% FT_SPIKETRIGGEREDSPECTRUM computes the Fourier spectrup of the LFP around the spikes.
%
% Use as
% [freq] = ft_spiketriggeredspectrum(cfg, data)
%
% The input data should be organised in a structure as obtained from
% the FT_APPENDSPIKE function. The configura... |
github | philippboehmsturm/antx-master | ft_conjunctionanalysis.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_conjunctionanalysis.m | 9,072 | utf_8 | 58afcd8bb20e28e073829a3e2c688a99 | function [Cval] = ft_conjunctionanalysis(cfg, varargin)
% FT_CONJUNCTIONANALYSIS finds minimalistic (maximum common) T values,
% clusters and probabilities in the input contrasts (n>=2).
% Furthermore, the output mask structure shows the overlap of sensors/voxels
% that are significantly different (logical AND).
%
% A... |
github | philippboehmsturm/antx-master | ft_spike_plot_psth.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_plot_psth.m | 6,101 | utf_8 | 6d81db6e1cbd9184978d301b0120b096 | function [hdl] = ft_spike_plot_psth(cfg,psth)
% FT_SPIKE_PLOT_PSTH makes a bar plot of PSTH structure (output from FT_SPIKE_PSTH)
% with error bars.
%
% Inputs:
% PSTH typically is a structure from FT_SPIKE_PSTH.
%
% Configurations (cfg):
%
% cfg.latency = [begin end] in seconds, 'maxperiod' (default), ... |
github | philippboehmsturm/antx-master | ft_sliceinterp.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sliceinterp.m | 18,011 | utf_8 | 5faba7a0b4387433ccdcfa79d195336e | function [outim]=ft_sliceinterp(cfg, ininterp)
% FT_SLICEINTERP plots a 2D-montage of source reconstruction and anatomical MRI
% after these have been interpolated onto the same grid.
%
% Use as
% ft_sliceinterp(cfg, interp)
% or
% [rgbimage] = ft_sliceinterp(cfg, interp), rgbimage is the monatage image
%
% w... |
github | philippboehmsturm/antx-master | ft_clusterplot.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_clusterplot.m | 16,490 | utf_8 | b8379032ebcbc79b3690053a475183fd | function ft_clusterplot(cfg, stat)
% FT_CLUSTERPLOT plots a series of topoplots with found clusters highlighted.
% stat is 2D or 1D data from FT_TIMELOCKSTATISTICS or FT_FREQSTATISTICS with 'cluster'
% as cfg.correctmc. 2D: stat from FT_TIMELOCKSTATISTICS not averaged over
% time, or stat from FT_FREQSTATISTICS averag... |
github | philippboehmsturm/antx-master | ft_sourcemovie.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sourcemovie.m | 8,106 | utf_8 | 74b719b98fa2f7af869cfc332e70a7fa | function cfg = ft_sourcemovie(cfg, source)
% FT_SOURCEMOVIE displays the source reconstruction on a cortical mesh
% and allows the user to scroll through time with a movie
%
% Use as
% FT_SOURCEMOVIE(cfg, source)
% where indata is obtained from FT_SOURCEANALYSIS
% and cfg is a configuratioun structure that should co... |
github | philippboehmsturm/antx-master | ft_sourcestatistics.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sourcestatistics.m | 21,411 | utf_8 | aad51cd6bbd790904f065535f4c33a11 | function [stat] = ft_sourcestatistics(cfg, varargin)
% FT_SOURCESTATISTICS computes the probability for a given null-hypothesis using
% a parametric statistical test or using a non-parametric randomization test.
%
% Use as
% [stat] = ft_sourcestatistics(cfg, source1, source2, ...)
% where the input data is the resu... |
github | philippboehmsturm/antx-master | ft_sourcedescriptives.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_sourcedescriptives.m | 47,954 | utf_8 | f734bb25dae653941d53735ba4b2598e | function [source] = ft_sourcedescriptives(cfg, source)
% FT_SOURCEDESCRIPTIVES computes descriptive parameters of the source
% analysis results.
%
% Use as:
% [source] = ft_sourcedescriptives(cfg, source)
%
% where cfg is a structure with the configuration details and source is the
% result from a beamformer source ... |
github | philippboehmsturm/antx-master | ft_componentbrowser_old.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_componentbrowser_old.m | 8,188 | utf_8 | 42dd5e64a1f8b29bbc4398a22c2aa440 | function [varargout] = ft_componentbrowser_old(cfg, comp)
% FT_COMPONENTBROWSER plots topography and activations of ICA components
% This function is deprecated, use FT_DATABROWSER with cfg.viewmode='template' instead.
%
% Use as
% ft_componentbrowser_old(cfg, comp)
% where comp is a FieldTrip structure obtained fro... |
github | philippboehmsturm/antx-master | ft_freqanalysis_mvar.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_freqanalysis_mvar.m | 4,454 | utf_8 | fa9d69e0cc7817d01bd2e89dccc5cfe6 | function [freq] = ft_freqanalysis_mvar(cfg, data)
% FT_FREQANALYSIS_MVAR performs frequency analysis on
% mvar data.
%
% Use as
% [freq] = ft_freqanalysis(cfg, data)
% Copyright (C) 2009, Jan-Mathijs Schoffelen
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documentation a... |
github | philippboehmsturm/antx-master | ft_interactiverealign.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_interactiverealign.m | 15,069 | utf_8 | aee4683cbadc909e326c438c1bbf57fc | function cfg = ft_interactiverealign(cfg)
% FT_INTERACTIVEREALIGN interactively rotates, scales and translates
% electrode positions to template electrode positions or towards
% the head surface.
%
% Use as
% [cfg] = ft_interactiverealign(cfg)
%
% Required configuration options:
% cfg.individual.vol
% cfg.individ... |
github | philippboehmsturm/antx-master | ft_topoplotER.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_topoplotER.m | 41,447 | utf_8 | 2ed7fe6daff435d1ed7ef28c7c343eb9 | function [cfg] = ft_topoplotER(cfg, varargin)
% FT_TOPOPLOTER plots the topographic distribution of 2-Dimensional ft_datatypes as
% event-related fields (ERF), potentials (ERP), the powerspectrum or coherence spectum
% that was computed using the FT_TIMELOCKANALYSIS, FT_TIMELOCKGRANDAVERAGE, FT_FREQANALYSIS or
% FT_FR... |
github | philippboehmsturm/antx-master | ft_spike_plot_raster.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_plot_raster.m | 14,853 | utf_8 | 6ff7ffacc8bc4b5b2e8c94560944ae5b | function [hdl] = ft_spike_plot_raster(cfg, spike)
% FT_SPIKE_RASTERPLOT:
% - makes a raster plot of spike-trains
% - allows for spike-density or psth plot on top
%
% The input SPIKE should be organised as:
% The SPIKE datatype, obtained from FT_SPIKESTATION_DATA2SPIKE or FT_SPIKE_MAKETRIALS
%
% The optional inp... |
github | philippboehmsturm/antx-master | ft_electroderealign.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_electroderealign.m | 28,009 | utf_8 | 3f54c6cc419ca2ba2fa35dd3892ae692 | function [norm] = ft_electroderealign(cfg)
% FT_ELECTRODEREALIGN rotates and translates electrode positions to
% template electrode positions or towards the head surface. It can
% either perform a rigid body transformation, in which only the
% coordinate system is changed, or it can apply additional deformations
% to ... |
github | philippboehmsturm/antx-master | ft_singleplotTFR.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_singleplotTFR.m | 19,869 | utf_8 | a7375cdecd992f1c7ac3a85269e85753 | function [cfg] = ft_singleplotTFR(cfg, data)
% ft_singleplotTFR plots the time-frequency representations of power of a
% single channel or the average over multiple channels.
%
% Use as:
% ft_singleplotTFR(cfg,data)
%
% The data can be a time-frequency representation of power that was
% computed using the FT_FREQANA... |
github | philippboehmsturm/antx-master | ft_multiplotER.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_multiplotER.m | 30,333 | utf_8 | e0c6664daaa3c05950c772ba99a61345 | function [cfg] = ft_multiplotER(cfg, varargin)
% ft_multiplotER plots the event-related fields or potentials versus time
% or of oscillatory activity (power or coherence) versus frequency. Multiple
% datasets can be overlayed. The plots are arranged according to their
% location specified in the layout.
%
% Use as:
%... |
github | philippboehmsturm/antx-master | ft_spikesorting.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spikesorting.m | 7,854 | utf_8 | a39d6cf535b4f2352fc27a704698a019 | function [spike] = ft_spikesorting(cfg, spike);
% FT_SPIKESORTING performs clustering of spike-waveforms and returns the unit number to which each spike belongs.
%
% Use as
% [spike] = ft_spikesorting(cfg, spike)
%
% The configuration can contain
% cfg.channel cell-array with channel selection (default = '... |
github | philippboehmsturm/antx-master | ft_spike_plot_isi.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_plot_isi.m | 3,481 | utf_8 | 7fae512a14b0530b7173a35ff65c5dbf | function [H] = ft_spike_plot_isih(cfg,isih)
% FT_SPIKE_PLOT_ISI makes an inter-spike-interval bar plot
%
% Inputs:
% ISIH is the output from FT_SPIKE_ISIHIST
%
% Configurations (cfg):
%
% cfg.spikechannel = string or index or logical array to to select 1 spike channel.
% (defaul... |
github | philippboehmsturm/antx-master | ft_spike_plot_jpsth.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_plot_jpsth.m | 12,629 | utf_8 | d6fc9d84b5e6bbd6b41575640eb64396 | function [H] = plot_jpsth(cfg,jpsth)
% plot_jpsth makes a return plot from JPSTH structure (output from
% plot_jpsth).
%
% Inputs:
% JPSTH must be the output structure from SPIKE_JPSTH and contain the field
% JPSTH.avg. If cfg.psth = 'yes', the field JPSTH.psth must be
% present as well.
%
% Use must... |
github | philippboehmsturm/antx-master | besa2fieldtrip.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/besa2fieldtrip.m | 16,494 | utf_8 | a73c6b43c6f501a6bf90b208ebe22bdf | function [data] = besa2fieldtrip(input)
% BESA2FIELDTRIP reads and converts various BESA datafiles into a FieldTrip
% data structure, which subsequently can be used for statistical analysis
% or other analysis methods implemented in Fieldtrip.
%
% Use as
% [data] = besa2fieldtrip(filename)
% where the filename shoul... |
github | philippboehmsturm/antx-master | ft_spike_plot_isireturn.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_spike_plot_isireturn.m | 11,709 | utf_8 | 1cdf323ebae6bacda934fc6851fbdc30 | function [hdl] = ft_spike_plot_isireturn(cfg,isih)
% FT_SPIKE_PLOT_ISIRETURN makes a return plot from ISIH structure (output from FT_SPIKE_ISIHIST). A
% return plot (or Poincare plots) plots the isi to the next spike versus the isi from the next
% spike to the second next spike, and thus gives insight in the second o... |
github | philippboehmsturm/antx-master | ft_movieplotER.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_movieplotER.m | 12,072 | utf_8 | f8d2c7570d15e8b4bdfd15e988591d98 | function ft_movieplotER(cfg, timelock)
% FT_MOVIEPLOTER makes a movie of the topographic distribution of the
% time-locked average.
%
% Use as
% ft_movieplotER(cfg, timelock)
% where the input data is from FT_TIMELOCKANALYSIS and the configuration
% can contain
% cfg.xparam = string, parameter over which the... |
github | philippboehmsturm/antx-master | ft_topoplotCC.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/ft_topoplotCC.m | 9,403 | utf_8 | cc237e56a89500a093d28a09a0104331 | function cfg = ft_topoplotCC(cfg, freq)
% FT_TOPOPLOTCC plots the connections between significantly coherent
% sensor pairs
%
% Use as
% ft_topoplotCC(cfg, freq)
%
% The configuration should contain:
% cfg.feedback = string (default = 'textbar')
% cfg.layout = specification of the layout, see FT_PREPARE_L... |
github | philippboehmsturm/antx-master | ft_struct2single.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_struct2single.m | 2,973 | utf_8 | b9e20af224d511cefc32a176b8d020d0 | function [x] = ft_struct2single(x, maxdepth);
% FT_STRUCT2SINGLE converts all double precision numeric data in a structure
% into single precision, which takes up half the amount of memory compared
% to double precision. It will also convert plain matrices and cell-arrays.
%
% Use as
% x = ft_struct2single(x);
%
% ... |
github | philippboehmsturm/antx-master | ft_checkconfig.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_checkconfig.m | 20,215 | utf_8 | 27c3f11d00ec0a63a1a446f4b4c30121 | function [cfg] = ft_checkconfig(cfg, varargin)
% FT_CHECKCONFIG checks the input cfg of the main FieldTrip functions.
%
% 1: It checks whether the cfg contains all the required options, it gives
% a warning when renamed or deprecated options are used, and it makes sure
% no forbidden options are used. If necessary and... |
github | philippboehmsturm/antx-master | ft_determine_coordsys.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_determine_coordsys.m | 9,713 | utf_8 | 8f08a860d0f42103b7c4b63fba2cbbeb | function [data] = ft_determine_coordsys(data, varargin)
% FT_DETERMINECOORDSYS plots a geometrical object, allowing you to perform a visual
% check on the coordinatesystem, the units and on the anatomical labels for the
% coordinate system axes.
%
% Use as
% [dataout] = ft_checkcoordsys(datain, varargin)
% where the... |
github | philippboehmsturm/antx-master | ft_hastoolbox.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_hastoolbox.m | 15,262 | utf_8 | 614a00df8ff0166ef4b5ad254779bc35 | function [status] = ft_hastoolbox(toolbox, autoadd, silent)
% FT_HASTOOLBOX tests whether an external toolbox is installed. Optionally
% it will try to determine the path to the toolbox and install it
% automatically.
%
% Use as
% [status] = ft_hastoolbox(toolbox, autoadd, silent)
%
% autoadd = 0 means that it will ... |
github | philippboehmsturm/antx-master | ft_checkdata.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_checkdata.m | 58,801 | utf_8 | 8d543f06e04e77fc4583d7f265baf5e4 | function [data] = ft_checkdata(data, varargin)
% FT_CHECKDATA checks the input data of the main FieldTrip functions, e.g. whether
% the type of data strucure corresponds with the required data. If neccessary
% and possible, this function will adjust the data structure to the input
% requirements (e.g. change dimord, a... |
github | philippboehmsturm/antx-master | nearest.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/nearest.m | 2,220 | utf_8 | 2bb829a5040b8b57693d43dee7d42f08 | function [i] = nearest(array, val)
% NEAREST return the index of an array nearest to a scalar
%
% [indx] = nearest(array, val)
% Copyright (C) 2002, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.ru.nl/neuroimaging/fieldtrip
% for the documentation and details.
%
% FieldTrip is free software... |
github | philippboehmsturm/antx-master | ft_checkopt.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_checkopt.m | 2,880 | utf_8 | e5dcf5f9eda8bcdbe4e14c446ec47697 | function opt = ft_checkopt(opt, key, allowedtype, allowedval)
% FT_CHECKOPT does a validity test on the types and values of a configuration
% structure or cell-array with key-value pairs.
%
% Use as
% opt = ft_checkopt(opt, key, allowedtype, allowedval)
%
% For allowedtype you can specify a string or a cell-array wi... |
github | philippboehmsturm/antx-master | ft_struct2double.m | .m | antx-master/freiburgLight/matlab/spm8/external/fieldtrip/utilities/ft_struct2double.m | 2,907 | utf_8 | 80254f0d01f62d7443be4f8c21f36ded | function [x] = ft_struct2double(x, maxdepth);
% FT_STRUCT2DOUBLE converts all single precision numeric data in a structure
% into double precision. It will also convert plain matrices and
% cell-arrays.
%
% Use as
% x = ft_struct2double(x);
%
% Starting from Matlab 7.0, you can use single precision data in your
% ... |
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