README.md

metadata

license: cc-by-4.0
pretty_name: TrialDesignBench Source
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/tdr.csv

TrialDesignBench Source

CSV index of clinical trials with linked protocol and SAP PDFs under documents/<row_id>/.

Bulk download from AACT

download_ctgov_prot_sap.py downloads protocol and SAP PDFs in bulk from an AACT static dataset dump. It reads <aact_dir>/provided_documents.txt and saves each PDF to documents/<nct_id>/<original-filename>.pdf.

pip install pandas requests tqdm
python download_ctgov_prot_sap.py /path/to/aact_pipe_delimited_dump

Useful flags: --output-dir, --limit N, --full (re-download existing), --include-icf (also fetch ICF-only rows).

Example output (already in documents/):

• documents/NCT03254108/Prot_000.pdf, documents/NCT03254108/SAP_001.pdf — separate protocol and SAP
• documents/NCT03521102/Prot_SAP_001.pdf — combined protocol + SAP