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hf_public_repos/transformers/examples/research_projects/codeparrot | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/arguments.py | from dataclasses import dataclass, field
from typing import Optional
@dataclass
class TrainingArguments:
"""
Configuration for training model.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be trained."}
)
save_dir: Optional[str] = field(
default="./", metadata={"help": "Save dir where model repo is cloned and models updates are saved to."}
)
dataset_name_train: Optional[str] = field(
default="codeparrot/codeparrot-clean-train", metadata={"help": "Name or path of training dataset."}
)
dataset_name_valid: Optional[str] = field(
default="codeparrot/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
train_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for training."})
valid_batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size for evaluation."})
weight_decay: Optional[float] = field(default=0.1, metadata={"help": "Value of weight decay."})
shuffle_buffer: Optional[int] = field(
default=10000, metadata={"help": "Size of buffer used to shuffle streaming dataset."}
)
learning_rate: Optional[float] = field(default=2e-4, metadata={"help": "Learning rate fo training."})
lr_scheduler_type: Optional[str] = field(default="cosine", metadata={"help": "Learning rate."})
num_warmup_steps: Optional[int] = field(
default=750, metadata={"help": "Number of warmup steps in the learning rate schedule."}
)
gradient_accumulation_steps: Optional[int] = field(
default=16, metadata={"help": "Number of gradient accumulation steps."}
)
gradient_checkpointing: Optional[bool] = field(
default=True, metadata={"help": "Use gradient checkpointing to reduce memory footprint."}
)
max_train_steps: Optional[int] = field(default=50000, metadata={"help": "Maximum number of training steps."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Sequence lengths used for training."})
seed: Optional[int] = field(default=1, metadata={"help": "Training seed."})
save_checkpoint_steps: Optional[int] = field(
default=1024,
metadata={"help": "Interval to save checkpoints. Measured as number of forward passes not training steps."},
)
resume_from_checkpoint: Optional[str] = field(
default=None, metadata={"help": "States path if the training should continue from a checkpoint folder."}
)
tokenized: Optional[bool] = field(default=False, metadata={"help": "If True the data is pretokenized."})
@dataclass
class EvaluationArguments:
"""
Configuration for evaluating model.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be evaluated."}
)
dataset_name: Optional[str] = field(
default="codeparrot/codeparrot-clean-valid", metadata={"help": "Name or path of validation dataset."}
)
batch_size: Optional[int] = field(default=2, metadata={"help": "Batch size used for evaluation."})
max_eval_steps: Optional[int] = field(
default=-1, metadata={"help": "Maximum number of evaluation steps. If -1 the full dataset is evaluated."}
)
seq_length: Optional[int] = field(default=1024, metadata={"help": "Length of sequences to be evaluated."})
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
@dataclass
class HumanEvalArguments:
"""
Configuration for running evaluation on HumanEval dataset.
"""
model_ckpt: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Model name or path of model to be evaluated."}
)
num_workers: Optional[int] = field(default=None, metadata={"help": "Number of workers used for code evaluation."})
num_tasks: Optional[int] = field(
default=None,
metadata={"help": "The number of human-eval tasks to run. If not included all tasks are evaluated."},
)
do_sample: Optional[bool] = field(
default=True, metadata={"help": "Sample from the language model's output distribution."}
)
temperature: Optional[float] = field(default=0.2, metadata={"help": "Sampling temperature used for generation."})
max_new_tokens: Optional[int] = field(default=256, metadata={"help": "Maximum number of newly generated tokens."})
top_k: Optional[int] = field(default=0, metadata={"help": "Top-k parameter used for generation."})
top_p: Optional[float] = field(default=0.95, metadata={"help": "Top-p parameter used for nucleus sampling."})
batch_size: Optional[int] = field(default=10, metadata={"help": "Number of generations to run in parallel."})
n_samples: Optional[int] = field(
default=200, metadata={"help": "Number of completions to generate for each sample."}
)
seed: Optional[int] = field(default=1, metadata={"help": "Random seed used for evaluation."})
output_file: Optional[str] = field(
default="eval_results.json", metadata={"help": "Random seed used for evaluation."}
)
HF_ALLOW_CODE_EVAL: Optional[str] = field(
default="0", metadata={"help": "Allow `code_eval` to execute Python code on machine"}
)
device_int: Optional[int] = field(
default=-1,
metadata={
"help": (
"Determine which device to run the `text-generation` Pipeline on. -1 is CPU and any zero or positive"
" number corresponds to which GPU device id to run on."
)
},
)
@dataclass
class PreprocessingArguments:
"""
Configuration for preprocessing data.
"""
num_workers: Optional[int] = field(
default=None,
metadata={
"help": "The number of CPU cores to use for parallel preprocessing. Default uses the maximum available."
},
)
dataset_name: Optional[str] = field(
default="transformersbook/codeparrot", metadata={"help": "Folder or name of dataset to process."}
)
output_dir: Optional[str] = field(
default="codeparrot-clean", metadata={"help": "Folder to save processed processed dataset."}
)
samples_per_file: Optional[int] = field(
default=100_000, metadata={"help": "Number of files to save per JSON output file."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
line_max: Optional[float] = field(
default=1000, metadata={"help": "Maximum line length in file, otherwise file is filtered."}
)
line_mean: Optional[float] = field(
default=100, metadata={"help": "Maximum mean line length in file, otherwise file is filtered."}
)
alpha_frac: Optional[float] = field(
default=0.25, metadata={"help": "Maximum fraction of non-alphanumeric characters, otherwise file is filtered."}
)
min_token_ratio: Optional[float] = field(
default=1.5, metadata={"help": "Minimum character token ratio for the file, otherwise file is filtered."}
)
filter_proba: Optional[float] = field(
default=0.7, metadata={"help": "Probability for filtering config, test and uncommon files."}
)
tokenizer: Optional[str] = field(
default="codeparrot/codeparrot",
metadata={"help": "Name or path to the tokenizer."},
)
near_deduplication: Optional[bool] = field(
default=False, metadata={"help": "If True, near-duplicate samples are removed."}
)
jaccard_threshold: Optional[float] = field(
default=0.85, metadata={"help": "Jaccard threshold for near-duplicate samples."}
)
@dataclass
class TokenizerTrainingArguments:
"""
Configuration for tokenizer training.
"""
base_tokenizer: Optional[str] = field(
default="gpt2", metadata={"help": "Base tokenizer to build new tokenizer from."}
)
dataset_name: Optional[str] = field(
default="transformersbook/codeparrot-train", metadata={"help": "Dataset to train tokenizer on."}
)
text_column: Optional[str] = field(default="content", metadata={"help": "Column containing text data to process."})
vocab_size: Optional[int] = field(default=200_000, metadata={"help": "Number of examples to train tokenizer on."})
n_examples: Optional[int] = field(
default=32768, metadata={"help": "Number of examples to train the tokenizer on."}
)
tokenizer_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of new tokenizer."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
@dataclass
class PretokenizationArguments:
"""
Configuration for data pretokenization.
"""
tokenizer_dir: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Name or path to the tokenizer."}
)
dataset_name: Optional[str] = field(
default="codeparrot/codeparrot-clean-train", metadata={"help": "Name or path to the dataset to pretokenize."}
)
tokenized_data_repo: Optional[str] = field(
default="tokenized-codeparrot-train", metadata={"help": "Repo name of the pretokenized data."}
)
num_workers: Optional[int] = field(default=None, metadata={"help": "Number of workers used for code evaluation."})
@dataclass
class InitializationArguments:
"""
Configuration for initializing new model.
"""
config_name: Optional[str] = field(
default="gpt2-large", metadata={"help": "Configuration to use for model initialization."}
)
tokenizer_name: Optional[str] = field(
default="codeparrot/codeparrot", metadata={"help": "Tokenizer attached to model."}
)
model_name: Optional[str] = field(default="codeparrot", metadata={"help": "Name of the created model."})
push_to_hub: Optional[bool] = field(default=True, metadata={"help": "Push saved tokenizer to the hub."})
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/minhash_deduplication.py | import json
import multiprocessing as mp
import re
from collections import defaultdict
from functools import partial
from typing import Dict, List, Optional, Set, Tuple, Type
from datasets import Dataset
from datasketch import MinHash, MinHashLSH
from dpu_utils.utils.iterators import ThreadedIterator
from tqdm import tqdm
NON_ALPHA = re.compile("[^A-Za-z_0-9]")
# parameters used in DuplicationIndex
MIN_NUM_TOKENS = 10
NUM_PERM = 256
def get_min_hash(tokens: List[str]) -> Optional[MinHash]:
"""Compute the MinHash of a code snippet."""
if len(tokens) < MIN_NUM_TOKENS:
return None
min_hash = MinHash(num_perm=NUM_PERM)
for token in set(tokens):
min_hash.update(token.encode())
return min_hash
def get_tokens(code: str) -> Set[str]:
"""Tokenize a code snippet."""
return {t for t in NON_ALPHA.split(code) if len(t.strip()) > 0}
class DuplicationIndex:
def __init__(
self,
*,
duplication_jaccard_threshold: float = 0.85,
):
self._duplication_jaccard_threshold = duplication_jaccard_threshold
self._num_perm = NUM_PERM
self._index = MinHashLSH(threshold=self._duplication_jaccard_threshold, num_perm=self._num_perm)
self._duplicate_clusters = defaultdict(set)
def add(self, code_key: Tuple, min_hash: MinHash) -> None:
"""Add a key to _index (MinHashLSH)
the min_hash is used to query closest matches based on the jaccard_threshold.
The new key is either added to a existing cluster of one close match,
or a new cluster is created. The clusters created in this way, depend on the order of add.
Args:
code_key (Tuple of (index, repo_name, path)):
Theoritically any hasbale key. Here we use a tuple to retrieve the information later.
min_hash: MinHash of the code_key.
"""
close_duplicates = self._index.query(min_hash)
if code_key in self._index.keys:
print(f"Duplicate key {code_key}")
return
self._index.insert(code_key, min_hash)
if len(close_duplicates) > 0:
for base_duplicate in close_duplicates:
if base_duplicate in self._duplicate_clusters:
self._duplicate_clusters[base_duplicate].add(code_key)
break
else:
self._duplicate_clusters[close_duplicates[0]].add(code_key)
def get_duplicate_clusters(self) -> List[List[Dict]]:
"""Export the duplicate clusters.
For each cluster, the first element is the base element of the cluster.
The base element has an estimation jaccard similarity higher than the threshold with all the other elements.
Returns:
duplicate_clusters (List[List[Dict]]):
List of duplicate clusters.
"""
duplicate_clusters = []
for base, duplicates in self._duplicate_clusters.items():
cluster = [base] + list(duplicates)
# reformat the cluster to be a list of dict
cluster = [{"base_index": el[0], "repo_name": el[1], "path": el[2]} for el in cluster]
duplicate_clusters.append(cluster)
return duplicate_clusters
def save(self, filepath) -> None:
duplicate_clusters = self.get_duplicate_clusters()
with open(filepath, "w") as f:
json.dump(duplicate_clusters, f)
def _compute_min_hash(element):
index, data = element
min_hash = get_min_hash([t for t in NON_ALPHA.split(data["content"]) if len(t.strip()) > 0])
if min_hash is not None:
return (index, data["repo_name"], data["path"]), min_hash
def minhash_iter(dataset_iterator: Type[Dataset]):
with mp.Pool() as pool:
for data in pool.imap_unordered(
_compute_min_hash,
ThreadedIterator(dataset_iterator, max_queue_size=10000),
chunksize=100,
):
if data is not None:
yield data
def make_duplicate_clusters(dataset_iterator: Type[Dataset], jaccard_threshold: float):
"""Find duplicate clusters in the dataset in two steps:
1. Compute MinHash for each code snippet. MinHash is a tool for fast jaccard similarity estimation.
This step is computed using an asynchronous multiprocessing pool, minhash_iter
2. Find duplicate clusters. The computed MinHash is added sequentially to the DuplicationIndex.
This step cannot be parallelized. So using asynchronous thread in the previous step helps to speed up the process.
"""
di = DuplicationIndex(duplication_jaccard_threshold=jaccard_threshold)
for filename, min_hash in tqdm(ThreadedIterator(minhash_iter(enumerate(dataset_iterator)), max_queue_size=100)):
di.add(filename, min_hash)
# Returns a List[Cluster] where Cluster is List[str] with the filenames.
return di.get_duplicate_clusters()
def jaccard_similarity(code1: str, code2: str) -> float:
"""Compute the Jaccard similarity of two code snippets."""
tokens1 = get_tokens(code1)
tokens2 = get_tokens(code2)
return len(tokens1 & tokens2) / len(tokens1 | tokens2)
_shared_dataset = None
def _find_cluster_extremes_shared(cluster, jaccard_threshold):
"""Find a reduced cluster such that each code in the origin cluster is similar to at least one code in the reduced cluster.
Two codes are similar if their Jaccard similarity is above the threshold.
Args:
cluster (List[dict]):
cluster is a list of dict, each dict contains the following keys:
- base_index
- repo_name
- path
This is a typical output of DuplicationIndex.get_duplicate_clusters()
jaccard_threshold (float):
threshold for Jaccard similarity.
Two codes are similar if their Jaccard similarity is above the threshold.
Returns:
extremes (List[dict]):
A reduced representation of the cluster. The field copies is added to each dict.
The copies field indicates the number of similar codes in the cluster for a extreme.
"""
extremes = []
for element1 in cluster:
code1 = _shared_dataset[element1["base_index"]]["content"]
for element2 in extremes:
code2 = _shared_dataset[element2["base_index"]]["content"]
if jaccard_similarity(code1, code2) >= jaccard_threshold:
element2["copies"] += 1
break
else:
element1["copies"] = 1
extremes.append(element1)
return extremes
def find_extremes(cluster_list, dataset, jaccard_threshold):
"""Call the _find_cluster_extremes_shared function in a parallel fashion.
Args:
cluster_list (List[List[Dict]]):
each cluster is a list of dicts with the key base_index,
referring to the index of the base code in the dataset.
dataset (Type[Dataset]):
dataset is used to access the content of the code snippets,
using the base_index from the cluster_list.
dataset is shared between all the processes using a glabal variable (any other way to share the dataset?),
otherwise the multi processing is not speeded up.
jaccard_threshold (float):
the threshold for the jaccard similarity. The default value is 0.85
Returns:
extremes_list (List[Dict]):
Each cluster is reduced to extremes.
See _find_cluster_extremes_shared for the definition of extremes.
"""
global _shared_dataset
_shared_dataset = dataset
extremes_list = []
f = partial(_find_cluster_extremes_shared, jaccard_threshold=jaccard_threshold)
with mp.Pool() as pool:
for extremes in tqdm(
pool.imap_unordered(
f,
cluster_list,
),
total=len(cluster_list),
):
extremes_list.append(extremes)
return extremes_list
def deduplicate_dataset(
dataset: Type[Dataset], jaccard_threshold: float = 0.85
) -> Tuple[Type[Dataset], List[List[Dict]]]:
"""Deduplicate the dataset using minhash and jaccard similarity.
This function first generate duplicate clusters, then each cluster
is reduced to the extremes that are similar to the other elements in the cluster.
Codes are called similar if their Jaccard similarity is greater than jaccard_threshold (0.85 default).
Args:
dataset (Type[Dataset]):
The dataset to deduplicate.
jaccard_threshold (float, default=0.85):
jaccard threshold to determine if two codes are similar
Returns:
ds_dedup (Type[Dataset]):
The deduplicated dataset.
duplicate_clusters (List[List[Dict]]):
The list of duplicate clusters.
Each cluster is a list of dicts with the following keys:
- base_index : int
The index of the code in the original dataset.
- repo_name : str
- path : str
- copies : int
The number of copies of the code in the cluster. (find_cluster_extremes)
- is_extreme : bool
Whether the code is an extreme in the cluster.
All the codes in the cluster are removed from the dataset except the extremes.
Example:
>>> from datasets import load_dataset
>>> from minhash_deduplication import deduplicate_dataset
>>> ds = load_dataset("lvwerra/codeparrot-clean", split="train")
>>> ds_dedup, duplicate_clusters = deduplicate_dataset(ds, jaccard_threshold=0.85)
"""
duplicate_clusters = make_duplicate_clusters(dataset, jaccard_threshold)
duplicate_indices = {x["base_index"] for cluster in duplicate_clusters for x in cluster}
extreme_dict = {}
extremes_clusters = find_extremes(duplicate_clusters, dataset, jaccard_threshold)
for extremes in extremes_clusters:
for element in extremes:
extreme_dict[element["base_index"]] = element
remove_indices = duplicate_indices - set(extreme_dict.keys())
ds_filter = dataset.filter(lambda x, idx: idx not in remove_indices, with_indices=True)
# update duplicate_clusters
for cluster in duplicate_clusters:
for element in cluster:
element["is_extreme"] = element["base_index"] in extreme_dict
if element["is_extreme"]:
element["copies"] = extreme_dict[element["base_index"]]["copies"]
print(f"Original dataset size: {len(dataset)}")
print(f"Number of duplicate clusters: {len(duplicate_clusters)}")
print(f"Files in duplicate cluster: {len(duplicate_indices)}")
print(f"Unique files in duplicate cluster: {len(extreme_dict)}")
print(f"Filtered dataset size: {len(ds_filter)}")
return ds_filter, duplicate_clusters
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/preprocessing.py | import gzip
import json
import multiprocessing
import os
import re
import shutil
import time
from pathlib import Path
import numpy as np
from arguments import PreprocessingArguments
from datasets import load_dataset
from huggingface_hub.utils import insecure_hashlib
from minhash_deduplication import deduplicate_dataset
from transformers import AutoTokenizer, HfArgumentParser
PATTERN = re.compile(r"\s+")
def get_hash(example):
"""Get hash of content field."""
return {"hash": insecure_hashlib.md5(re.sub(PATTERN, "", example["content"]).encode("utf-8")).hexdigest()}
def line_stats(example):
"""Calculates mean and max line length of file."""
line_lengths = [len(line) for line in example["content"].splitlines()]
return {"line_mean": np.mean(line_lengths), "line_max": max(line_lengths)}
def alpha_stats(example):
"""Calculates mean and max line length of file."""
alpha_frac = np.mean([c.isalnum() for c in example["content"]])
return {"alpha_frac": alpha_frac}
def check_uniques(example, uniques):
"""Check if current hash is still in set of unique hashes and remove if true."""
if example["hash"] in uniques:
uniques.remove(example["hash"])
return True
else:
return False
def is_autogenerated(example, scan_width=5):
"""Check if file is autogenerated by looking for keywords in the first few lines of the file."""
keywords = ["auto-generated", "autogenerated", "automatically generated"]
lines = example["content"].splitlines()
for _, line in zip(range(scan_width), lines):
for keyword in keywords:
if keyword in line.lower():
return {"autogenerated": True}
else:
return {"autogenerated": False}
def is_config_or_test(example, scan_width=5, coeff=0.05):
"""Check if file is a configuration file or a unit test by :
1- looking for keywords in the first few lines of the file.
2- counting number of occurence of the words 'config' and 'test' with respect to number of lines.
"""
keywords = ["unit tests", "test file", "configuration file"]
lines = example["content"].splitlines()
count_config = 0
count_test = 0
# first test
for _, line in zip(range(scan_width), lines):
for keyword in keywords:
if keyword in line.lower():
return {"config_or_test": True}
# second test
nlines = example["content"].count("\n")
threshold = int(coeff * nlines)
for line in lines:
count_config += line.lower().count("config")
count_test += line.lower().count("test")
if count_config > threshold or count_test > threshold:
return {"config_or_test": True}
return {"config_or_test": False}
def has_no_keywords(example):
"""Check if a python file has none of the keywords for: funcion, class, for loop, while loop."""
keywords = ["def ", "class ", "for ", "while "]
lines = example["content"].splitlines()
for line in lines:
for keyword in keywords:
if keyword in line.lower():
return {"has_no_keywords": False}
return {"has_no_keywords": True}
def has_few_assignments(example, minimum=4):
"""Check if file uses symbol '=' less than `minimum` times."""
lines = example["content"].splitlines()
counter = 0
for line in lines:
counter += line.lower().count("=")
if counter > minimum:
return {"has_few_assignments": False}
return {"has_few_assignments": True}
def char_token_ratio(example):
"""Compute character/token ratio of the file with tokenizer."""
input_ids = tokenizer(example["content"], truncation=False)["input_ids"]
ratio = len(example["content"]) / len(input_ids)
return {"ratio": ratio}
def preprocess(example):
"""Chain all preprocessing steps into one function to not fill cache."""
results = {}
results.update(get_hash(example))
results.update(line_stats(example))
results.update(alpha_stats(example))
results.update(char_token_ratio(example))
results.update(is_autogenerated(example))
results.update(is_config_or_test(example))
results.update(has_no_keywords(example))
results.update(has_few_assignments(example))
return results
def filter(example, uniques, args):
"""Filter dataset with heuristics. Config, test and has_no_keywords files are removed with a given probability."""
if not check_uniques(example, uniques):
return False
elif example["autogenerated"]:
return False
elif example["line_max"] > args.line_max:
return False
elif example["line_mean"] > args.line_mean:
return False
elif example["alpha_frac"] < args.alpha_frac:
return False
elif example["ratio"] < args.min_token_ratio:
return False
elif example["config_or_test"] and np.random.rand() <= args.filter_proba:
return False
elif example["has_no_keywords"] and np.random.rand() <= args.filter_proba:
return False
elif example["has_few_assignments"]:
return False
else:
return True
def compress_file(file_path):
"""Compress a file with g-zip."""
with open(file_path, "rb") as f_in:
with gzip.open(str(file_path) + ".gz", "wb", compresslevel=6) as f_out:
shutil.copyfileobj(f_in, f_out)
os.unlink(file_path)
# Settings
parser = HfArgumentParser(PreprocessingArguments)
args = parser.parse_args()
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_dir)
# Load dataset
t_start = time.time()
ds = load_dataset(args.dataset_name, split="train")
print(f"Time to load dataset: {time.time()-t_start:.2f}")
# Run preprocessing
t_start = time.time()
ds = ds.map(preprocess, num_proc=args.num_workers)
print(f"Time to preprocess dataset: {time.time()-t_start:.2f}")
# Deduplicate hashes
uniques = set(ds.unique("hash"))
frac = len(uniques) / len(ds)
print(f"Fraction of duplicates: {1-frac:.2%}")
# Deduplicate data and apply heuristics
t_start = time.time()
ds_filter = ds.filter(filter, fn_kwargs={"uniques": uniques, "args": args})
print(f"Time to filter dataset: {time.time()-t_start:.2f}")
print(f"Size of filtered dataset: {len(ds_filter)}")
# Deduplicate with minhash and jaccard similarity
if args.near_deduplication:
t_start = time.time()
ds_filter, duplicate_clusters = deduplicate_dataset(ds_filter, args.jaccard_threshold)
print(f"Time to deduplicate dataset: {time.time()-t_start:.2f}")
print(f"Size of deduplicate dataset: {len(ds_filter)}")
# Save data in batches of samples_per_file
output_dir = Path(args.output_dir)
output_dir.mkdir(exist_ok=True)
# save duplicate_clusters in the output_dir as artifacts
# not sure it is the right place the save it
if args.near_deduplication:
with open(output_dir / "duplicate_clusters.json", "w") as f:
json.dump(duplicate_clusters, f)
data_dir = output_dir / "data"
data_dir.mkdir(exist_ok=True)
t_start = time.time()
for file_number, index in enumerate(range(0, len(ds_filter), args.samples_per_file)):
file_path = str(data_dir / f"file-{file_number+1:012}.json")
end_index = min(len(ds_filter), index + args.samples_per_file)
ds_filter.select(list(range(index, end_index))).to_json(file_path)
compress_file(file_path)
print(f"Time to save dataset: {time.time()-t_start:.2f}")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/codeparrot_training.py | import logging
import os
import time
from argparse import Namespace
from pathlib import Path
import datasets
import torch
from accelerate import Accelerator, DistributedType
from accelerate.utils import ProjectConfiguration
from arguments import TrainingArguments
from datasets import load_dataset
from huggingface_hub import Repository
from torch.optim import AdamW
from torch.utils.data import IterableDataset
from torch.utils.data.dataloader import DataLoader
from torch.utils.data.datapipes.iter.combinatorics import ShufflerIterDataPipe
import transformers
from transformers import AutoModelForCausalLM, AutoTokenizer, HfArgumentParser, get_scheduler, set_seed
class ConstantLengthDataset(IterableDataset):
"""
Iterable dataset that returns constant length chunks of tokens from stream of text files.
Args:
tokenizer (Tokenizer): The processor used for proccessing the data.
dataset (dataset.Dataset): Dataset with text files.
infinite (bool): If True the iterator is reset after dataset reaches end else stops.
seq_length (int): Length of token sequences to return.
num_of_sequences (int): Number of token sequences to keep in buffer.
chars_per_token (int): Number of characters per token used to estimate number of tokens in text buffer.
tokenized (bool): If true we use a pretokenized dataset.
"""
def __init__(
self,
tokenizer,
dataset,
infinite=False,
seq_length=1024,
num_of_sequences=1024,
chars_per_token=3.6,
tokenized=False,
):
self.tokenizer = tokenizer
self.concat_token_id = tokenizer.bos_token_id
self.dataset = dataset
self.seq_length = seq_length
self.epoch = 0
self.infinite = infinite
self.current_size = 0
self.tokenized = tokenized
if self.tokenized:
self.max_buffer_size = seq_length * num_of_sequences
self.content_field = "input_ids"
else:
self.max_buffer_size = seq_length * chars_per_token * num_of_sequences
self.content_field = "content"
def __iter__(self):
iterator = iter(self.dataset)
more_examples = True
while more_examples:
buffer, buffer_len = [], 0
while True:
if buffer_len >= self.max_buffer_size:
break
try:
buffer.append(next(iterator)[self.content_field])
buffer_len += len(buffer[-1])
except StopIteration:
if self.infinite:
iterator = iter(self.dataset)
self.epoch += 1
logger.info(f"Dataset epoch: {self.epoch}")
else:
more_examples = False
break
if self.tokenized:
tokenized_inputs = buffer
else:
tokenized_inputs = self.tokenizer(buffer, truncation=False)["input_ids"]
all_token_ids = []
for tokenized_input in tokenized_inputs:
all_token_ids.extend(tokenized_input + [self.concat_token_id])
for i in range(0, len(all_token_ids), self.seq_length):
input_ids = all_token_ids[i : i + self.seq_length]
if len(input_ids) == self.seq_length:
self.current_size += 1
yield torch.tensor(input_ids)
def shuffle(self, buffer_size=1000):
return ShufflerIterDataPipe(self, buffer_size=buffer_size)
def setup_logging(args):
project_name = args.model_ckpt.split("/")[-1]
logger = logging.getLogger(__name__)
log_dir = Path(args.save_dir) / "log/"
log_dir.mkdir(exist_ok=True)
filename = f"debug_{accelerator.process_index}.log"
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
handlers=[logging.FileHandler(log_dir / filename), logging.StreamHandler()],
)
if accelerator.is_main_process: # we only want to setup logging once
accelerator.init_trackers(project_name, vars(args))
run_name = accelerator.trackers[0].run.name
logger.setLevel(logging.INFO)
datasets.utils.logging.set_verbosity_info()
transformers.utils.logging.set_verbosity_info()
else:
run_name = ""
logger.setLevel(logging.ERROR)
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
return logger, run_name
def create_dataloaders(args):
ds_kwargs = {"streaming": True}
train_data = load_dataset(args.dataset_name_train, split="train", **ds_kwargs)
train_data = train_data.shuffle(buffer_size=args.shuffle_buffer, seed=args.seed)
valid_data = load_dataset(args.dataset_name_valid, split="train", **ds_kwargs)
train_dataset = ConstantLengthDataset(
tokenizer, train_data, infinite=True, seq_length=args.seq_length, tokenized=args.tokenized
)
valid_dataset = ConstantLengthDataset(
tokenizer, valid_data, infinite=False, seq_length=args.seq_length, tokenized=args.tokenized
)
train_dataset = train_dataset.shuffle(buffer_size=args.shuffle_buffer)
train_dataloader = DataLoader(train_dataset, batch_size=args.train_batch_size, shuffle=True)
eval_dataloader = DataLoader(valid_dataset, batch_size=args.valid_batch_size)
return train_dataloader, eval_dataloader
def get_grouped_params(model, args, no_decay=["bias", "ln_1.weight", "ln_2.weight", "ln_f.weight"]):
params_with_wd, params_without_wd = [], []
for n, p in model.named_parameters():
if any(nd in n for nd in no_decay):
params_without_wd.append(p)
else:
params_with_wd.append(p)
return [
{"params": params_with_wd, "weight_decay": args.weight_decay},
{"params": params_without_wd, "weight_decay": 0.0},
]
def log_metrics(step, metrics):
logger.info(f"Step {step}: {metrics}")
if accelerator.is_main_process:
accelerator.log(metrics, step)
def compute_tflops(elapsed_time, accelerator, args):
# TFLOPs formula (from Equation 3 in Section 5.1 of https://arxiv.org/pdf/2104.04473.pdf).
config_model = accelerator.unwrap_model(model).config
checkpoint_factor = 4 if args.gradient_checkpointing else 3
batch_size = args.train_batch_size * accelerator.state.num_processes * args.gradient_accumulation_steps
factor = 24 * checkpoint_factor * batch_size * args.seq_length * config_model.n_layer * (config_model.n_embd**2)
flops_per_iteration = factor * (
1.0
+ (args.seq_length / (6.0 * config_model.n_embd))
+ (tokenizer.vocab_size / (16.0 * config_model.n_layer * config_model.n_embd))
)
tflops = flops_per_iteration / (elapsed_time * accelerator.state.num_processes * (10**12))
return tflops
def evaluate(args):
model.eval()
losses = []
for step, batch in enumerate(eval_dataloader):
with torch.no_grad():
outputs = model(batch, labels=batch)
loss = outputs.loss.repeat(args.valid_batch_size)
losses.append(accelerator.gather(loss))
if args.max_eval_steps > 0 and step >= args.max_eval_steps:
break
losses = torch.cat(losses)
loss = losses[: eval_dataloader.dataset.current_size].mean()
try:
perplexity = torch.exp(loss)
except OverflowError:
perplexity = float("inf")
return loss.item(), perplexity.item()
# Settings
parser = HfArgumentParser(TrainingArguments)
args = parser.parse_args()
# Accelerator
config = ProjectConfiguration(project_dir=args.save_dir, logging_dir="log")
accelerator = Accelerator(log_with=["wandb", "tensorboard"], project_config=config)
acc_state = {str(k): str(v) for k, v in accelerator.state.__dict__.items()}
args = Namespace(**vars(args), **acc_state)
samples_per_step = accelerator.state.num_processes * args.train_batch_size
set_seed(args.seed)
# Clone model repository
if accelerator.is_main_process:
hf_repo = Repository(args.save_dir, clone_from=args.model_ckpt)
# Logging
logger, run_name = setup_logging(args)
logger.info(accelerator.state)
# Checkout new branch on repo
if accelerator.is_main_process:
hf_repo.git_checkout(run_name, create_branch_ok=True)
# Load model and tokenizer
model = AutoModelForCausalLM.from_pretrained(args.save_dir)
if args.gradient_checkpointing:
model.gradient_checkpointing_enable()
tokenizer = AutoTokenizer.from_pretrained(args.save_dir)
# Load dataset and dataloader
train_dataloader, eval_dataloader = create_dataloaders(args)
# Prepare the optimizer and learning rate scheduler
optimizer = AdamW(get_grouped_params(model, args), lr=args.learning_rate)
lr_scheduler = get_scheduler(
name=args.lr_scheduler_type,
optimizer=optimizer,
num_warmup_steps=args.num_warmup_steps,
num_training_steps=args.max_train_steps,
)
accelerator.register_for_checkpointing(lr_scheduler)
def get_lr():
return optimizer.param_groups[0]["lr"]
# Prepare everything with our `accelerator`.
model, optimizer, train_dataloader, eval_dataloader = accelerator.prepare(
model, optimizer, train_dataloader, eval_dataloader
)
# load in the weights and states from a previous save
if args.resume_from_checkpoint:
if args.resume_from_checkpoint is not None or args.resume_from_checkpoint != "":
accelerator.print(f"Resumed from checkpoint: {args.resume_from_checkpoint}")
accelerator.load_state(args.resume_from_checkpoint)
path = os.path.basename(args.resume_from_checkpoint)
else:
# Get the most recent checkpoint
dirs = [f.name for f in os.scandir(args.save_dir) if f.is_dir() and "step" in str(f)]
dirs.sort(key=os.path.getctime)
path = dirs[-1] # Sorts folders by date modified, most recent checkpoint is the last
# Extract the step of the checkpoint to continue from there
training_difference = os.path.splitext(path)[0]
resume_step = int(training_difference.replace("step_", ""))
# Train model
model.train()
completed_steps = 0
t_start = time.time()
loss_tracking = 0
for step, batch in enumerate(train_dataloader, start=1):
if args.resume_from_checkpoint and step < resume_step:
continue # we need to skip steps until we reach the resumed step
loss = model(batch, labels=batch, use_cache=False).loss
avg_loss = accelerator.gather(loss.repeat(args.train_batch_size)).mean()
loss_tracking += avg_loss.item() / args.gradient_accumulation_steps
log_metrics(step, {"samples": step * samples_per_step, "loss_per_step/train": loss.item()})
loss = loss / args.gradient_accumulation_steps
if step % args.gradient_accumulation_steps != 0:
# Prevent backward from doing gradient all_reduce in every step
if accelerator.distributed_type == DistributedType.MULTI_GPU:
with model.no_sync():
accelerator.backward(loss)
else:
accelerator.backward(loss)
else:
lr = get_lr()
accelerator.backward(loss)
accelerator.clip_grad_norm_(model.parameters(), 1.0)
optimizer.step()
lr_scheduler.step()
optimizer.zero_grad()
elapsed_time = time.time() - t_start
tflops = compute_tflops(elapsed_time, accelerator, args)
log_metrics(
step,
{
"steps": completed_steps,
"loss/train": loss_tracking,
"lr": lr,
"tflops": tflops,
"time_per_iteration": elapsed_time,
},
)
t_start = time.time()
loss_tracking = 0
completed_steps += 1
if step % args.save_checkpoint_steps == 0:
logger.info("Evaluating and saving model checkpoint")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
save_dir = os.path.join(args.save_dir, f"step_{step}")
accelerator.save_state(save_dir)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message=f"step {step}")
model.train()
if completed_steps >= args.max_train_steps:
break
# Evaluate and save the last checkpoint
logger.info("Evaluating and saving model after training")
eval_loss, perplexity = evaluate(args)
log_metrics(step, {"loss/eval": eval_loss, "perplexity": perplexity})
accelerator.wait_for_everyone()
unwrapped_model = accelerator.unwrap_model(model)
unwrapped_model.save_pretrained(args.save_dir, save_function=accelerator.save)
save_dir = os.path.join(args.save_dir, f"step_{step}")
accelerator.save_state(save_dir)
if accelerator.is_main_process:
hf_repo.push_to_hub(commit_message="final model")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/pretokenizing.py | import multiprocessing
import time
from arguments import PretokenizationArguments
from datasets import load_dataset
from transformers import AutoTokenizer, HfArgumentParser
def tokenize(example):
output = {}
output["input_ids"] = tokenizer(example["content"], truncation=False)["input_ids"]
output["ratio_char_token"] = len(example["content"]) / len(output["input_ids"])
return output
parser = HfArgumentParser(PretokenizationArguments)
args = parser.parse_args()
if args.num_workers is None:
args.num_workers = multiprocessing.cpu_count()
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_dir)
t_start = time.time()
ds = load_dataset(args.dataset_name, split="train")
print(f"Dataset loaded in {time.time()-t_start:.2f}s")
t_start = time.time()
ds = ds.map(
tokenize,
num_proc=args.num_workers,
remove_columns=[
"repo_name",
"path",
"copies",
"size",
"content",
"license",
"hash",
"line_mean",
"line_max",
"alpha_frac",
"autogenerated",
],
)
print(f"Dataset tokenized in {time.time()-t_start:.2f}s")
t_start = time.time()
ds.push_to_hub(args.tokenized_data_repo)
print(f"Data pushed to the hub in {time.time()-t_start:.2f}s")
| 0 |
hf_public_repos/transformers/examples/research_projects/codeparrot/scripts | hf_public_repos/transformers/examples/research_projects/codeparrot/scripts/tests/test_deduplicate.py | from unittest import TestCase
from datasets import Dataset
from minhash_deduplication import deduplicate_dataset, make_duplicate_clusters
def get_dataset():
data_dict = {
"repo_name": ["test_repo1", "test_repo2", "test_repo3"],
"path": ["test_1.py", "test_2.py", "unit_test.py"],
"content": ["a " * 20, "a " * 30, "b " * 7],
}
dataset = Dataset.from_dict(data_dict)
return dataset
class MakeDuplicateClustersTest(TestCase):
def test_make_duplicate_clusters(self):
ds = get_dataset()
duplicate_clusters = make_duplicate_clusters(ds, 0.85)
self.assertEqual(len(duplicate_clusters[0]), 2)
def test_deduplicate_dataset(self):
ds = get_dataset()
ds_filter, duplicate_clusters = deduplicate_dataset(ds)
self.assertEqual(len(ds_filter), 2)
print(duplicate_clusters)
self.assertEqual(duplicate_clusters[0][0]["copies"], 2)
self.assertEqual(duplicate_clusters[0][0]["is_extreme"], True)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/trainer_quant_qa.py | # coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
# Copyright 2021 NVIDIA Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
A subclass of `Trainer` specific to Question-Answering tasks
"""
import logging
import os
import quant_trainer
import torch
from torch.utils.data import DataLoader
from transformers import Trainer, is_torch_tpu_available
from transformers.trainer_utils import PredictionOutput
logger = logging.getLogger(__name__)
if is_torch_tpu_available(check_device=False):
import torch_xla.core.xla_model as xm
import torch_xla.debug.metrics as met
class QuestionAnsweringTrainer(Trainer):
def __init__(self, *args, eval_examples=None, post_process_function=None, quant_trainer_args=None, **kwargs):
super().__init__(*args, **kwargs)
self.eval_examples = eval_examples
self.post_process_function = post_process_function
self.quant_trainer_args = quant_trainer_args
self.calib_num = 128 # default number of calibration samples
def get_calib_dataloader(self, calib_dataset=None):
"""
Returns the calibration dataloader :class:`~torch.utils.data.DataLoader`.
Args:
calib_dataset (:obj:`torch.utils.data.Dataset`, `optional`)
"""
if calib_dataset is None and self.calib_dataset is None:
raise ValueError("Trainer: calibration requires an calib_dataset.")
calib_dataset = calib_dataset if calib_dataset is not None else self.calib_dataset
calib_dataset = self._remove_unused_columns(calib_dataset, description="Calibration")
return DataLoader(
calib_dataset,
batch_size=self.args.eval_batch_size,
collate_fn=self.data_collator,
drop_last=self.args.dataloader_drop_last,
num_workers=self.args.dataloader_num_workers,
pin_memory=self.args.dataloader_pin_memory,
shuffle=True,
)
def calibrate(self, calib_dataset=None):
calib_dataset = self.train_dataset if calib_dataset is None else calib_dataset
calib_dataloader = self.get_calib_dataloader(calib_dataset)
model = self.model
quant_trainer.configure_model(model, self.quant_trainer_args, calib=True)
model.eval()
quant_trainer.enable_calibration(model)
logger.info("***** Running calibration *****")
logger.info(f" Num examples = {self.calib_num}")
logger.info(f" Batch size = {calib_dataloader.batch_size}")
for step, inputs in enumerate(calib_dataloader):
# Prediction step
loss, logits, labels = self.prediction_step(model, inputs, prediction_loss_only=True)
if (step + 1) * calib_dataloader.batch_size >= self.calib_num:
break
quant_trainer.finish_calibration(model, self.quant_trainer_args)
self.model = model
def evaluate(self, eval_dataset=None, eval_examples=None, ignore_keys=None, metric_key_prefix: str = "eval"):
eval_dataset = self.eval_dataset if eval_dataset is None else eval_dataset
eval_dataloader = self.get_eval_dataloader(eval_dataset)
eval_examples = self.eval_examples if eval_examples is None else eval_examples
# Temporarily disable metric computation, we will do it in the loop here.
compute_metrics = self.compute_metrics
self.compute_metrics = None
eval_loop = self.prediction_loop if self.args.use_legacy_prediction_loop else self.evaluation_loop
try:
output = eval_loop(
eval_dataloader,
description="Evaluation",
# No point gathering the predictions if there are no metrics, otherwise we defer to
# self.args.prediction_loss_only
prediction_loss_only=True if compute_metrics is None else None,
ignore_keys=ignore_keys,
)
finally:
self.compute_metrics = compute_metrics
if self.post_process_function is not None and self.compute_metrics is not None:
eval_preds = self.post_process_function(eval_examples, eval_dataset, output.predictions)
metrics = self.compute_metrics(eval_preds)
# Prefix all keys with metric_key_prefix + '_'
for key in list(metrics.keys()):
if not key.startswith(f"{metric_key_prefix}_"):
metrics[f"{metric_key_prefix}_{key}"] = metrics.pop(key)
self.log(metrics)
else:
metrics = {}
if self.args.tpu_metrics_debug or self.args.debug:
# tpu-comment: Logging debug metrics for PyTorch/XLA (compile, execute times, ops, etc.)
xm.master_print(met.metrics_report())
self.control = self.callback_handler.on_evaluate(self.args, self.state, self.control, metrics)
return metrics
def predict(self, predict_dataset, predict_examples, ignore_keys=None, metric_key_prefix: str = "test"):
predict_dataloader = self.get_test_dataloader(predict_dataset)
# Temporarily disable metric computation, we will do it in the loop here.
compute_metrics = self.compute_metrics
self.compute_metrics = None
eval_loop = self.prediction_loop if self.args.use_legacy_prediction_loop else self.evaluation_loop
try:
output = eval_loop(
predict_dataloader,
description="Prediction",
# No point gathering the predictions if there are no metrics, otherwise we defer to
# self.args.prediction_loss_only
prediction_loss_only=True if compute_metrics is None else None,
ignore_keys=ignore_keys,
)
finally:
self.compute_metrics = compute_metrics
if self.post_process_function is None or self.compute_metrics is None:
return output
predictions = self.post_process_function(predict_examples, predict_dataset, output.predictions, "predict")
metrics = self.compute_metrics(predictions)
# Prefix all keys with metric_key_prefix + '_'
for key in list(metrics.keys()):
if not key.startswith(f"{metric_key_prefix}_"):
metrics[f"{metric_key_prefix}_{key}"] = metrics.pop(key)
return PredictionOutput(predictions=predictions.predictions, label_ids=predictions.label_ids, metrics=metrics)
def save_onnx(self, output_dir="./"):
eval_dataset = self.eval_dataset
eval_dataloader = self.get_eval_dataloader(eval_dataset)
batch = next(iter(eval_dataloader))
# saving device - to make it consistent
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
# convert to tuple
input_tuple = tuple(v.to(device) for k, v in batch.items())
logger.info("Converting model to be onnx compatible")
from pytorch_quantization.nn import TensorQuantizer
TensorQuantizer.use_fb_fake_quant = True
model = self.model.to(device)
model.eval()
model.float()
model_to_save = model.module if hasattr(model, "module") else model
quant_trainer.configure_model(model_to_save, self.quant_trainer_args)
output_model_file = os.path.join(output_dir, "model.onnx")
logger.info(f"exporting model to {output_model_file}")
axes = {0: "batch_size", 1: "seq_len"}
torch.onnx.export(
model_to_save,
input_tuple,
output_model_file,
export_params=True,
opset_version=13,
do_constant_folding=True,
input_names=["input_ids", "attention_mask", "token_type_ids"],
output_names=["output_start_logits", "output_end_logits"],
dynamic_axes={
"input_ids": axes,
"attention_mask": axes,
"token_type_ids": axes,
"output_start_logits": axes,
"output_end_logits": axes,
},
verbose=True,
)
logger.info("onnx export finished")
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/utils_qa.py | # coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Post-processing utilities for question answering.
"""
import collections
import json
import logging
import os
from typing import Optional, Tuple
import numpy as np
from tqdm.auto import tqdm
logger = logging.getLogger(__name__)
def postprocess_qa_predictions(
examples,
features,
predictions: Tuple[np.ndarray, np.ndarray],
version_2_with_negative: bool = False,
n_best_size: int = 20,
max_answer_length: int = 30,
null_score_diff_threshold: float = 0.0,
output_dir: Optional[str] = None,
prefix: Optional[str] = None,
log_level: Optional[int] = logging.WARNING,
):
"""
Post-processes the predictions of a question-answering model to convert them to answers that are substrings of the
original contexts. This is the base postprocessing functions for models that only return start and end logits.
Args:
examples: The non-preprocessed dataset (see the main script for more information).
features: The processed dataset (see the main script for more information).
predictions (:obj:`Tuple[np.ndarray, np.ndarray]`):
The predictions of the model: two arrays containing the start logits and the end logits respectively. Its
first dimension must match the number of elements of :obj:`features`.
version_2_with_negative (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the underlying dataset contains examples with no answers.
n_best_size (:obj:`int`, `optional`, defaults to 20):
The total number of n-best predictions to generate when looking for an answer.
max_answer_length (:obj:`int`, `optional`, defaults to 30):
The maximum length of an answer that can be generated. This is needed because the start and end predictions
are not conditioned on one another.
null_score_diff_threshold (:obj:`float`, `optional`, defaults to 0):
The threshold used to select the null answer: if the best answer has a score that is less than the score of
the null answer minus this threshold, the null answer is selected for this example (note that the score of
the null answer for an example giving several features is the minimum of the scores for the null answer on
each feature: all features must be aligned on the fact they `want` to predict a null answer).
Only useful when :obj:`version_2_with_negative` is :obj:`True`.
output_dir (:obj:`str`, `optional`):
If provided, the dictionaries of predictions, n_best predictions (with their scores and logits) and, if
:obj:`version_2_with_negative=True`, the dictionary of the scores differences between best and null
answers, are saved in `output_dir`.
prefix (:obj:`str`, `optional`):
If provided, the dictionaries mentioned above are saved with `prefix` added to their names.
log_level (:obj:`int`, `optional`, defaults to ``logging.WARNING``):
``logging`` log level (e.g., ``logging.WARNING``)
"""
if len(predictions) != 2:
raise ValueError("`predictions` should be a tuple with two elements (start_logits, end_logits).")
all_start_logits, all_end_logits = predictions
if len(predictions[0]) != len(features):
raise ValueError(f"Got {len(predictions[0])} predictions and {len(features)} features.")
# Build a map example to its corresponding features.
example_id_to_index = {k: i for i, k in enumerate(examples["id"])}
features_per_example = collections.defaultdict(list)
for i, feature in enumerate(features):
features_per_example[example_id_to_index[feature["example_id"]]].append(i)
# The dictionaries we have to fill.
all_predictions = collections.OrderedDict()
all_nbest_json = collections.OrderedDict()
if version_2_with_negative:
scores_diff_json = collections.OrderedDict()
# Logging.
logger.setLevel(log_level)
logger.info(f"Post-processing {len(examples)} example predictions split into {len(features)} features.")
# Let's loop over all the examples!
for example_index, example in enumerate(tqdm(examples)):
# Those are the indices of the features associated to the current example.
feature_indices = features_per_example[example_index]
min_null_prediction = None
prelim_predictions = []
# Looping through all the features associated to the current example.
for feature_index in feature_indices:
# We grab the predictions of the model for this feature.
start_logits = all_start_logits[feature_index]
end_logits = all_end_logits[feature_index]
# This is what will allow us to map some the positions in our logits to span of texts in the original
# context.
offset_mapping = features[feature_index]["offset_mapping"]
# Optional `token_is_max_context`, if provided we will remove answers that do not have the maximum context
# available in the current feature.
token_is_max_context = features[feature_index].get("token_is_max_context", None)
# Update minimum null prediction.
feature_null_score = start_logits[0] + end_logits[0]
if min_null_prediction is None or min_null_prediction["score"] > feature_null_score:
min_null_prediction = {
"offsets": (0, 0),
"score": feature_null_score,
"start_logit": start_logits[0],
"end_logit": end_logits[0],
}
# Go through all possibilities for the `n_best_size` greater start and end logits.
start_indexes = np.argsort(start_logits)[-1 : -n_best_size - 1 : -1].tolist()
end_indexes = np.argsort(end_logits)[-1 : -n_best_size - 1 : -1].tolist()
for start_index in start_indexes:
for end_index in end_indexes:
# Don't consider out-of-scope answers, either because the indices are out of bounds or correspond
# to part of the input_ids that are not in the context.
if (
start_index >= len(offset_mapping)
or end_index >= len(offset_mapping)
or offset_mapping[start_index] is None
or len(offset_mapping[start_index]) < 2
or offset_mapping[end_index] is None
or len(offset_mapping[end_index]) < 2
):
continue
# Don't consider answers with a length that is either < 0 or > max_answer_length.
if end_index < start_index or end_index - start_index + 1 > max_answer_length:
continue
# Don't consider answer that don't have the maximum context available (if such information is
# provided).
if token_is_max_context is not None and not token_is_max_context.get(str(start_index), False):
continue
prelim_predictions.append(
{
"offsets": (offset_mapping[start_index][0], offset_mapping[end_index][1]),
"score": start_logits[start_index] + end_logits[end_index],
"start_logit": start_logits[start_index],
"end_logit": end_logits[end_index],
}
)
if version_2_with_negative:
# Add the minimum null prediction
prelim_predictions.append(min_null_prediction)
null_score = min_null_prediction["score"]
# Only keep the best `n_best_size` predictions.
predictions = sorted(prelim_predictions, key=lambda x: x["score"], reverse=True)[:n_best_size]
# Add back the minimum null prediction if it was removed because of its low score.
if version_2_with_negative and not any(p["offsets"] == (0, 0) for p in predictions):
predictions.append(min_null_prediction)
# Use the offsets to gather the answer text in the original context.
context = example["context"]
for pred in predictions:
offsets = pred.pop("offsets")
pred["text"] = context[offsets[0] : offsets[1]]
# In the very rare edge case we have not a single non-null prediction, we create a fake prediction to avoid
# failure.
if len(predictions) == 0 or (len(predictions) == 1 and predictions[0]["text"] == ""):
predictions.insert(0, {"text": "empty", "start_logit": 0.0, "end_logit": 0.0, "score": 0.0})
# Compute the softmax of all scores (we do it with numpy to stay independent from torch/tf in this file, using
# the LogSumExp trick).
scores = np.array([pred.pop("score") for pred in predictions])
exp_scores = np.exp(scores - np.max(scores))
probs = exp_scores / exp_scores.sum()
# Include the probabilities in our predictions.
for prob, pred in zip(probs, predictions):
pred["probability"] = prob
# Pick the best prediction. If the null answer is not possible, this is easy.
if not version_2_with_negative:
all_predictions[example["id"]] = predictions[0]["text"]
else:
# Otherwise we first need to find the best non-empty prediction.
i = 0
while predictions[i]["text"] == "":
i += 1
best_non_null_pred = predictions[i]
# Then we compare to the null prediction using the threshold.
score_diff = null_score - best_non_null_pred["start_logit"] - best_non_null_pred["end_logit"]
scores_diff_json[example["id"]] = float(score_diff) # To be JSON-serializable.
if score_diff > null_score_diff_threshold:
all_predictions[example["id"]] = ""
else:
all_predictions[example["id"]] = best_non_null_pred["text"]
# Make `predictions` JSON-serializable by casting np.float back to float.
all_nbest_json[example["id"]] = [
{k: (float(v) if isinstance(v, (np.float16, np.float32, np.float64)) else v) for k, v in pred.items()}
for pred in predictions
]
# If we have an output_dir, let's save all those dicts.
if output_dir is not None:
if not os.path.isdir(output_dir):
raise EnvironmentError(f"{output_dir} is not a directory.")
prediction_file = os.path.join(
output_dir, "predictions.json" if prefix is None else f"{prefix}_predictions.json"
)
nbest_file = os.path.join(
output_dir, "nbest_predictions.json" if prefix is None else f"{prefix}_nbest_predictions.json"
)
if version_2_with_negative:
null_odds_file = os.path.join(
output_dir, "null_odds.json" if prefix is None else f"{prefix}_null_odds.json"
)
logger.info(f"Saving predictions to {prediction_file}.")
with open(prediction_file, "w") as writer:
writer.write(json.dumps(all_predictions, indent=4) + "\n")
logger.info(f"Saving nbest_preds to {nbest_file}.")
with open(nbest_file, "w") as writer:
writer.write(json.dumps(all_nbest_json, indent=4) + "\n")
if version_2_with_negative:
logger.info(f"Saving null_odds to {null_odds_file}.")
with open(null_odds_file, "w") as writer:
writer.write(json.dumps(scores_diff_json, indent=4) + "\n")
return all_predictions
def postprocess_qa_predictions_with_beam_search(
examples,
features,
predictions: Tuple[np.ndarray, np.ndarray],
version_2_with_negative: bool = False,
n_best_size: int = 20,
max_answer_length: int = 30,
start_n_top: int = 5,
end_n_top: int = 5,
output_dir: Optional[str] = None,
prefix: Optional[str] = None,
log_level: Optional[int] = logging.WARNING,
):
"""
Post-processes the predictions of a question-answering model with beam search to convert them to answers that are substrings of the
original contexts. This is the postprocessing functions for models that return start and end logits, indices, as well as
cls token predictions.
Args:
examples: The non-preprocessed dataset (see the main script for more information).
features: The processed dataset (see the main script for more information).
predictions (:obj:`Tuple[np.ndarray, np.ndarray]`):
The predictions of the model: two arrays containing the start logits and the end logits respectively. Its
first dimension must match the number of elements of :obj:`features`.
version_2_with_negative (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the underlying dataset contains examples with no answers.
n_best_size (:obj:`int`, `optional`, defaults to 20):
The total number of n-best predictions to generate when looking for an answer.
max_answer_length (:obj:`int`, `optional`, defaults to 30):
The maximum length of an answer that can be generated. This is needed because the start and end predictions
are not conditioned on one another.
start_n_top (:obj:`int`, `optional`, defaults to 5):
The number of top start logits too keep when searching for the :obj:`n_best_size` predictions.
end_n_top (:obj:`int`, `optional`, defaults to 5):
The number of top end logits too keep when searching for the :obj:`n_best_size` predictions.
output_dir (:obj:`str`, `optional`):
If provided, the dictionaries of predictions, n_best predictions (with their scores and logits) and, if
:obj:`version_2_with_negative=True`, the dictionary of the scores differences between best and null
answers, are saved in `output_dir`.
prefix (:obj:`str`, `optional`):
If provided, the dictionaries mentioned above are saved with `prefix` added to their names.
log_level (:obj:`int`, `optional`, defaults to ``logging.WARNING``):
``logging`` log level (e.g., ``logging.WARNING``)
"""
if len(predictions) != 5:
raise ValueError("`predictions` should be a tuple with five elements.")
start_top_log_probs, start_top_index, end_top_log_probs, end_top_index, cls_logits = predictions
if len(predictions[0]) != len(features):
raise ValueError(f"Got {len(predictions[0])} predictions and {len(features)} features.")
# Build a map example to its corresponding features.
example_id_to_index = {k: i for i, k in enumerate(examples["id"])}
features_per_example = collections.defaultdict(list)
for i, feature in enumerate(features):
features_per_example[example_id_to_index[feature["example_id"]]].append(i)
# The dictionaries we have to fill.
all_predictions = collections.OrderedDict()
all_nbest_json = collections.OrderedDict()
scores_diff_json = collections.OrderedDict() if version_2_with_negative else None
# Logging.
logger.setLevel(log_level)
logger.info(f"Post-processing {len(examples)} example predictions split into {len(features)} features.")
# Let's loop over all the examples!
for example_index, example in enumerate(tqdm(examples)):
# Those are the indices of the features associated to the current example.
feature_indices = features_per_example[example_index]
min_null_score = None
prelim_predictions = []
# Looping through all the features associated to the current example.
for feature_index in feature_indices:
# We grab the predictions of the model for this feature.
start_log_prob = start_top_log_probs[feature_index]
start_indexes = start_top_index[feature_index]
end_log_prob = end_top_log_probs[feature_index]
end_indexes = end_top_index[feature_index]
feature_null_score = cls_logits[feature_index]
# This is what will allow us to map some the positions in our logits to span of texts in the original
# context.
offset_mapping = features[feature_index]["offset_mapping"]
# Optional `token_is_max_context`, if provided we will remove answers that do not have the maximum context
# available in the current feature.
token_is_max_context = features[feature_index].get("token_is_max_context", None)
# Update minimum null prediction
if min_null_score is None or feature_null_score < min_null_score:
min_null_score = feature_null_score
# Go through all possibilities for the `n_start_top`/`n_end_top` greater start and end logits.
for i in range(start_n_top):
for j in range(end_n_top):
start_index = int(start_indexes[i])
j_index = i * end_n_top + j
end_index = int(end_indexes[j_index])
# Don't consider out-of-scope answers (last part of the test should be unnecessary because of the
# p_mask but let's not take any risk)
if (
start_index >= len(offset_mapping)
or end_index >= len(offset_mapping)
or offset_mapping[start_index] is None
or offset_mapping[end_index] is None
):
continue
# Don't consider answers with a length negative or > max_answer_length.
if end_index < start_index or end_index - start_index + 1 > max_answer_length:
continue
# Don't consider answer that don't have the maximum context available (if such information is
# provided).
if token_is_max_context is not None and not token_is_max_context.get(str(start_index), False):
continue
prelim_predictions.append(
{
"offsets": (offset_mapping[start_index][0], offset_mapping[end_index][1]),
"score": start_log_prob[i] + end_log_prob[j_index],
"start_log_prob": start_log_prob[i],
"end_log_prob": end_log_prob[j_index],
}
)
# Only keep the best `n_best_size` predictions.
predictions = sorted(prelim_predictions, key=lambda x: x["score"], reverse=True)[:n_best_size]
# Use the offsets to gather the answer text in the original context.
context = example["context"]
for pred in predictions:
offsets = pred.pop("offsets")
pred["text"] = context[offsets[0] : offsets[1]]
# In the very rare edge case we have not a single non-null prediction, we create a fake prediction to avoid
# failure.
if len(predictions) == 0:
predictions.insert(0, {"text": "", "start_logit": -1e-6, "end_logit": -1e-6, "score": -2e-6})
# Compute the softmax of all scores (we do it with numpy to stay independent from torch/tf in this file, using
# the LogSumExp trick).
scores = np.array([pred.pop("score") for pred in predictions])
exp_scores = np.exp(scores - np.max(scores))
probs = exp_scores / exp_scores.sum()
# Include the probabilities in our predictions.
for prob, pred in zip(probs, predictions):
pred["probability"] = prob
# Pick the best prediction and set the probability for the null answer.
all_predictions[example["id"]] = predictions[0]["text"]
if version_2_with_negative:
scores_diff_json[example["id"]] = float(min_null_score)
# Make `predictions` JSON-serializable by casting np.float back to float.
all_nbest_json[example["id"]] = [
{k: (float(v) if isinstance(v, (np.float16, np.float32, np.float64)) else v) for k, v in pred.items()}
for pred in predictions
]
# If we have an output_dir, let's save all those dicts.
if output_dir is not None:
if not os.path.isdir(output_dir):
raise EnvironmentError(f"{output_dir} is not a directory.")
prediction_file = os.path.join(
output_dir, "predictions.json" if prefix is None else f"{prefix}_predictions.json"
)
nbest_file = os.path.join(
output_dir, "nbest_predictions.json" if prefix is None else f"{prefix}_nbest_predictions.json"
)
if version_2_with_negative:
null_odds_file = os.path.join(
output_dir, "null_odds.json" if prefix is None else f"{prefix}_null_odds.json"
)
logger.info(f"Saving predictions to {prediction_file}.")
with open(prediction_file, "w") as writer:
writer.write(json.dumps(all_predictions, indent=4) + "\n")
logger.info(f"Saving nbest_preds to {nbest_file}.")
with open(nbest_file, "w") as writer:
writer.write(json.dumps(all_nbest_json, indent=4) + "\n")
if version_2_with_negative:
logger.info(f"Saving null_odds to {null_odds_file}.")
with open(null_odds_file, "w") as writer:
writer.write(json.dumps(scores_diff_json, indent=4) + "\n")
return all_predictions, scores_diff_json
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/ort-infer-benchmark.py | import os
import time
import numpy as np
import onnxruntime as ort
os.environ["ORT_TENSORRT_INT8_ENABLE"] = "1"
os.environ["ORT_TENSORRT_INT8_USE_NATIVE_CALIBRATION_TABLE"] = "0"
os.environ["ORT_TENSORRT_ENGINE_CACHE_ENABLE"] = "1"
sess_opt = ort.SessionOptions()
sess_opt.graph_optimization_level = ort.GraphOptimizationLevel.ORT_DISABLE_ALL
print("Create inference session...")
execution_provider = ["TensorrtExecutionProvider", "CUDAExecutionProvider"]
sess = ort.InferenceSession("model.onnx", sess_options=sess_opt, providers=execution_provider)
run_opt = ort.RunOptions()
sequence = 128
batch = 1
input_ids = np.ones((batch, sequence), dtype=np.int64)
attention_mask = np.ones((batch, sequence), dtype=np.int64)
token_type_ids = np.ones((batch, sequence), dtype=np.int64)
print("Warm up phase...")
sess.run(
None,
{
sess.get_inputs()[0].name: input_ids,
sess.get_inputs()[1].name: attention_mask,
sess.get_inputs()[2].name: token_type_ids,
},
run_options=run_opt,
)
print("Start inference...")
start_time = time.time()
max_iters = 2000
predict = {}
for iter in range(max_iters):
predict = sess.run(
None,
{
sess.get_inputs()[0].name: input_ids,
sess.get_inputs()[1].name: attention_mask,
sess.get_inputs()[2].name: token_type_ids,
},
run_options=run_opt,
)
print("Average Inference Time = {:.3f} ms".format((time.time() - start_time) * 1000 / max_iters))
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/Dockerfile | # coding=utf-8
# Copyright 2021 NVIDIA Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
FROM nvcr.io/nvidia/pytorch:22.02-py3
LABEL maintainer="Hugging Face"
LABEL repository="transformers"
RUN apt-get update
RUN apt-get install sudo
RUN python3 -m pip install --no-cache-dir --upgrade pip
RUN python3 -m pip install --no-cache-dir --ignore-installed pycuda
RUN python3 -m pip install --no-cache-dir \
pytorch-quantization --extra-index-url https://pypi.ngc.nvidia.com
RUN python3 -m pip install --no-cache-dir onnxruntime-gpu==1.11
WORKDIR /workspace
COPY . transformers/
RUN cd transformers/ && \
python3 -m pip install --no-cache-dir .
RUN python3 -m pip install --no-cache-dir datasets \
accelerate
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/evaluate-hf-trt-qa.py | # coding=utf-8
# Copyright 2021 NVIDIA Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for question-answering on SQuAD (DistilBERT, Bert, XLM, XLNet)."""
import argparse
import logging
import os
import time
import timeit
import datasets
import numpy as np
import pycuda.autoinit # noqa: F401
import pycuda.driver as cuda
import tensorrt as trt
import torch
from absl import logging as absl_logging
from accelerate import Accelerator
from datasets import load_dataset, load_metric
from torch.utils.data import DataLoader
from utils_qa import postprocess_qa_predictions
import transformers
from transformers import AutoTokenizer, EvalPrediction, default_data_collator, set_seed
from transformers.trainer_pt_utils import nested_concat, nested_truncate
TRT_LOGGER = trt.Logger(trt.Logger.WARNING)
absl_logger = absl_logging.get_absl_logger()
absl_logger.setLevel(logging.WARNING)
logger = logging.getLogger(__name__)
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--onnx_model_path",
default=None,
type=str,
required=True,
help="Path to ONNX model: ",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Other parameters
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
required=True,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--version_2_with_negative",
action="store_true",
help="If true, the SQuAD examples contain some that do not have an answer.",
)
parser.add_argument(
"--null_score_diff_threshold",
type=float,
default=0.0,
help="If null_score - best_non_null is greater than the threshold predict null.",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded."
),
)
parser.add_argument(
"--doc_stride",
default=128,
type=int,
help="When splitting up a long document into chunks, how much stride to take between chunks.",
)
parser.add_argument("--per_device_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation.")
parser.add_argument(
"--n_best_size",
default=20,
type=int,
help="The total number of n-best predictions to generate in the nbest_predictions.json output file.",
)
parser.add_argument(
"--max_answer_length",
default=30,
type=int,
help=(
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
),
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--dataset_name",
type=str,
default=None,
required=True,
help="The name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--dataset_config_name",
type=str,
default=None,
help="The configuration name of the dataset to use (via the datasets library).",
)
parser.add_argument(
"--preprocessing_num_workers", type=int, default=4, help="A csv or a json file containing the training data."
)
parser.add_argument("--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision instead of 32-bit",
)
parser.add_argument(
"--int8",
action="store_true",
help="Whether to use INT8",
)
args = parser.parse_args()
if args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(args.tokenizer_name, use_fast=True)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script. "
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
logger.info("Training/evaluation parameters %s", args)
args.eval_batch_size = args.per_device_eval_batch_size
INPUT_SHAPE = (args.eval_batch_size, args.max_seq_length)
# TRT Engine properties
STRICT_TYPES = True
engine_name = "temp_engine/bert-fp32.engine"
if args.fp16:
engine_name = "temp_engine/bert-fp16.engine"
if args.int8:
engine_name = "temp_engine/bert-int8.engine"
# import ONNX file
if not os.path.exists("temp_engine"):
os.makedirs("temp_engine")
EXPLICIT_BATCH = 1 << (int)(trt.NetworkDefinitionCreationFlag.EXPLICIT_BATCH)
with trt.Builder(TRT_LOGGER) as builder, builder.create_network(EXPLICIT_BATCH) as network, trt.OnnxParser(
network, TRT_LOGGER
) as parser:
with open(args.onnx_model_path, "rb") as model:
if not parser.parse(model.read()):
for error in range(parser.num_errors):
print(parser.get_error(error))
# Query input names and shapes from parsed TensorRT network
network_inputs = [network.get_input(i) for i in range(network.num_inputs)]
input_names = [_input.name for _input in network_inputs] # ex: ["actual_input1"]
with builder.create_builder_config() as config:
config.max_workspace_size = 1 << 50
if STRICT_TYPES:
config.set_flag(trt.BuilderFlag.STRICT_TYPES)
if args.fp16:
config.set_flag(trt.BuilderFlag.FP16)
if args.int8:
config.set_flag(trt.BuilderFlag.INT8)
profile = builder.create_optimization_profile()
config.add_optimization_profile(profile)
for i in range(len(input_names)):
profile.set_shape(input_names[i], INPUT_SHAPE, INPUT_SHAPE, INPUT_SHAPE)
engine = builder.build_engine(network, config)
# serialize_engine and store in file (can be directly loaded and deserialized):
with open(engine_name, "wb") as f:
f.write(engine.serialize())
# run inference with TRT
def model_infer(inputs, context, d_inputs, h_output0, h_output1, d_output0, d_output1, stream):
input_ids = np.asarray(inputs["input_ids"], dtype=np.int32)
attention_mask = np.asarray(inputs["attention_mask"], dtype=np.int32)
token_type_ids = np.asarray(inputs["token_type_ids"], dtype=np.int32)
# Copy inputs
cuda.memcpy_htod_async(d_inputs[0], input_ids.ravel(), stream)
cuda.memcpy_htod_async(d_inputs[1], attention_mask.ravel(), stream)
cuda.memcpy_htod_async(d_inputs[2], token_type_ids.ravel(), stream)
# start time
start_time = time.time()
# Run inference
context.execute_async(
bindings=[int(d_inp) for d_inp in d_inputs] + [int(d_output0), int(d_output1)], stream_handle=stream.handle
)
# Transfer predictions back from GPU
cuda.memcpy_dtoh_async(h_output0, d_output0, stream)
cuda.memcpy_dtoh_async(h_output1, d_output1, stream)
# Synchronize the stream and take time
stream.synchronize()
# end time
end_time = time.time()
infer_time = end_time - start_time
outputs = (h_output0, h_output1)
# print(outputs)
return outputs, infer_time
# Initialize the accelerator. We will let the accelerator handle device placement for us in this example.
accelerator = Accelerator()
# Make one log on every process with the configuration for debugging.
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
# Setup logging, we only want one process per machine to log things on the screen.
# accelerator.is_local_main_process is only True for one process per machine.
logger.setLevel(logging.INFO if accelerator.is_local_main_process else logging.ERROR)
if accelerator.is_local_main_process:
datasets.utils.logging.set_verbosity_warning()
transformers.utils.logging.set_verbosity_info()
else:
datasets.utils.logging.set_verbosity_error()
transformers.utils.logging.set_verbosity_error()
# If passed along, set the training seed now.
if args.seed is not None:
set_seed(args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
if args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(args.dataset_name, args.dataset_config_name)
else:
raise ValueError("Evaluation requires a dataset name")
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
# Preprocessing the datasets.
# Preprocessing is slighlty different for training and evaluation.
column_names = raw_datasets["validation"].column_names
question_column_name = "question" if "question" in column_names else column_names[0]
context_column_name = "context" if "context" in column_names else column_names[1]
answer_column_name = "answers" if "answers" in column_names else column_names[2]
# Padding side determines if we do (question|context) or (context|question).
pad_on_right = tokenizer.padding_side == "right"
if args.max_seq_length > tokenizer.model_max_length:
logger.warning(
f"The max_seq_length passed ({args.max_seq_length}) is larger than the maximum length for the "
f"model ({tokenizer.model_max_length}). Using max_seq_length={tokenizer.model_max_length}."
)
max_seq_length = min(args.max_seq_length, tokenizer.model_max_length)
# Validation preprocessing
def prepare_validation_features(examples):
# Some of the questions have lots of whitespace on the left, which is not useful and will make the
# truncation of the context fail (the tokenized question will take a lots of space). So we remove that
# left whitespace
examples[question_column_name] = [q.lstrip() for q in examples[question_column_name]]
# Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results
# in one example possible giving several features when a context is long, each of those features having a
# context that overlaps a bit the context of the previous feature.
tokenized_examples = tokenizer(
examples[question_column_name if pad_on_right else context_column_name],
examples[context_column_name if pad_on_right else question_column_name],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_seq_length,
stride=args.doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length",
)
# Since one example might give us several features if it has a long context, we need a map from a feature to
# its corresponding example. This key gives us just that.
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
# For evaluation, we will need to convert our predictions to substrings of the context, so we keep the
# corresponding example_id and we will store the offset mappings.
tokenized_examples["example_id"] = []
for i in range(len(tokenized_examples["input_ids"])):
# Grab the sequence corresponding to that example (to know what is the context and what is the question).
sequence_ids = tokenized_examples.sequence_ids(i)
context_index = 1 if pad_on_right else 0
# One example can give several spans, this is the index of the example containing this span of text.
sample_index = sample_mapping[i]
tokenized_examples["example_id"].append(examples["id"][sample_index])
# Set to None the offset_mapping that are not part of the context so it's easy to determine if a token
# position is part of the context or not.
tokenized_examples["offset_mapping"][i] = [
(o if sequence_ids[k] == context_index else None)
for k, o in enumerate(tokenized_examples["offset_mapping"][i])
]
return tokenized_examples
eval_examples = raw_datasets["validation"]
# Validation Feature Creation
eval_dataset = eval_examples.map(
prepare_validation_features,
batched=True,
num_proc=args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not args.overwrite_cache,
desc="Running tokenizer on validation dataset",
)
data_collator = default_data_collator
eval_dataset_for_model = eval_dataset.remove_columns(["example_id", "offset_mapping"])
eval_dataloader = DataLoader(
eval_dataset_for_model, collate_fn=data_collator, batch_size=args.per_device_eval_batch_size
)
# Post-processing:
def post_processing_function(examples, features, predictions, stage="eval"):
# Post-processing: we match the start logits and end logits to answers in the original context.
predictions = postprocess_qa_predictions(
examples=examples,
features=features,
predictions=predictions,
version_2_with_negative=args.version_2_with_negative,
n_best_size=args.n_best_size,
max_answer_length=args.max_answer_length,
null_score_diff_threshold=args.null_score_diff_threshold,
output_dir=args.output_dir,
prefix=stage,
)
# Format the result to the format the metric expects.
if args.version_2_with_negative:
formatted_predictions = [
{"id": k, "prediction_text": v, "no_answer_probability": 0.0} for k, v in predictions.items()
]
else:
formatted_predictions = [{"id": k, "prediction_text": v} for k, v in predictions.items()]
references = [{"id": ex["id"], "answers": ex[answer_column_name]} for ex in examples]
return EvalPrediction(predictions=formatted_predictions, label_ids=references)
metric = load_metric("squad_v2" if args.version_2_with_negative else "squad")
# Evaluation!
logger.info("Loading ONNX model %s for evaluation", args.onnx_model_path)
with open(engine_name, "rb") as f, trt.Runtime(TRT_LOGGER) as runtime, runtime.deserialize_cuda_engine(
f.read()
) as engine, engine.create_execution_context() as context:
# setup for TRT inferrence
for i in range(len(input_names)):
context.set_binding_shape(i, INPUT_SHAPE)
assert context.all_binding_shapes_specified
def binding_nbytes(binding):
return trt.volume(engine.get_binding_shape(binding)) * engine.get_binding_dtype(binding).itemsize
# Allocate device memory for inputs and outputs.
d_inputs = [cuda.mem_alloc(binding_nbytes(binding)) for binding in engine if engine.binding_is_input(binding)]
# Allocate output buffer
h_output0 = cuda.pagelocked_empty(tuple(context.get_binding_shape(3)), dtype=np.float32)
h_output1 = cuda.pagelocked_empty(tuple(context.get_binding_shape(4)), dtype=np.float32)
d_output0 = cuda.mem_alloc(h_output0.nbytes)
d_output1 = cuda.mem_alloc(h_output1.nbytes)
# Create a stream in which to copy inputs/outputs and run inference.
stream = cuda.Stream()
# Evaluation
logger.info("***** Running Evaluation *****")
logger.info(f" Num examples = {len(eval_dataset)}")
logger.info(f" Batch size = {args.per_device_eval_batch_size}")
total_time = 0.0
niter = 0
start_time = timeit.default_timer()
all_preds = None
for step, batch in enumerate(eval_dataloader):
outputs, infer_time = model_infer(batch, context, d_inputs, h_output0, h_output1, d_output0, d_output1, stream)
total_time += infer_time
niter += 1
start_logits, end_logits = outputs
start_logits = torch.tensor(start_logits)
end_logits = torch.tensor(end_logits)
# necessary to pad predictions and labels for being gathered
start_logits = accelerator.pad_across_processes(start_logits, dim=1, pad_index=-100)
end_logits = accelerator.pad_across_processes(end_logits, dim=1, pad_index=-100)
logits = (accelerator.gather(start_logits).cpu().numpy(), accelerator.gather(end_logits).cpu().numpy())
all_preds = logits if all_preds is None else nested_concat(all_preds, logits, padding_index=-100)
if all_preds is not None:
all_preds = nested_truncate(all_preds, len(eval_dataset))
evalTime = timeit.default_timer() - start_time
logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(eval_dataset))
# Inference time from TRT
logger.info("Average Inference Time = {:.3f} ms".format(total_time * 1000 / niter))
logger.info("Total Inference Time = {:.3f} ms".format(total_time * 1000))
logger.info("Total Number of Inference = %d", niter)
prediction = post_processing_function(eval_examples, eval_dataset, all_preds)
eval_metric = metric.compute(predictions=prediction.predictions, references=prediction.label_ids)
logger.info(f"Evaluation metrics: {eval_metric}")
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/README.md | <!---
Copyright 2021 NVIDIA Corporation. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
# Huggingface QDQBERT Quantization Example
The QDQBERT model adds fake quantization (pair of QuantizeLinear/DequantizeLinear ops) to:
* linear layer inputs and weights
* matmul inputs
* residual add inputs
In this example, we use QDQBERT model to do quantization on SQuAD task, including Quantization Aware Training (QAT), Post Training Quantization (PTQ) and inferencing using TensorRT.
Required:
- [pytorch-quantization toolkit](https://github.com/NVIDIA/TensorRT/tree/master/tools/pytorch-quantization)
- [TensorRT >= 8.2](https://developer.nvidia.com/tensorrt)
- PyTorch >= 1.10.0
## Setup the environment with Dockerfile
Under the directory of `transformers/`, build the docker image:
```
docker build . -f examples/research_projects/quantization-qdqbert/Dockerfile -t bert_quantization:latest
```
Run the docker:
```
docker run --gpus all --privileged --rm -it --shm-size=1g --ulimit memlock=-1 --ulimit stack=67108864 bert_quantization:latest
```
In the container:
```
cd transformers/examples/research_projects/quantization-qdqbert/
```
## Quantization Aware Training (QAT)
Calibrate the pretrained model and finetune with quantization awared:
```
python3 run_quant_qa.py \
--model_name_or_path bert-base-uncased \
--dataset_name squad \
--max_seq_length 128 \
--doc_stride 32 \
--output_dir calib/bert-base-uncased \
--do_calib \
--calibrator percentile \
--percentile 99.99
```
```
python3 run_quant_qa.py \
--model_name_or_path calib/bert-base-uncased \
--dataset_name squad \
--do_train \
--do_eval \
--per_device_train_batch_size 12 \
--learning_rate 4e-5 \
--num_train_epochs 2 \
--max_seq_length 128 \
--doc_stride 32 \
--output_dir finetuned_int8/bert-base-uncased \
--tokenizer_name bert-base-uncased \
--save_steps 0
```
### Export QAT model to ONNX
To export the QAT model finetuned above:
```
python3 run_quant_qa.py \
--model_name_or_path finetuned_int8/bert-base-uncased \
--output_dir ./ \
--save_onnx \
--per_device_eval_batch_size 1 \
--max_seq_length 128 \
--doc_stride 32 \
--dataset_name squad \
--tokenizer_name bert-base-uncased
```
Use `--recalibrate-weights` to calibrate the weight ranges according to the quantizer axis. Use `--quant-per-tensor` for per tensor quantization (default is per channel).
Recalibrating will affect the accuracy of the model, but the change should be minimal (< 0.5 F1).
### Benchmark the INT8 QAT ONNX model inference with TensorRT using dummy input
```
trtexec --onnx=model.onnx --explicitBatch --workspace=16384 --int8 --shapes=input_ids:64x128,attention_mask:64x128,token_type_ids:64x128 --verbose
```
### Benchmark the INT8 QAT ONNX model inference with [ONNX Runtime-TRT](https://onnxruntime.ai/docs/execution-providers/TensorRT-ExecutionProvider.html) using dummy input
```
python3 ort-infer-benchmark.py
```
### Evaluate the INT8 QAT ONNX model inference with TensorRT
```
python3 evaluate-hf-trt-qa.py \
--onnx_model_path=./model.onnx \
--output_dir ./ \
--per_device_eval_batch_size 64 \
--max_seq_length 128 \
--doc_stride 32 \
--dataset_name squad \
--tokenizer_name bert-base-uncased \
--int8 \
--seed 42
```
## Fine-tuning of FP32 model for comparison
Finetune a fp32 precision model with [transformers/examples/pytorch/question-answering/](../../pytorch/question-answering/):
```
python3 ../../pytorch/question-answering/run_qa.py \
--model_name_or_path bert-base-uncased \
--dataset_name squad \
--per_device_train_batch_size 12 \
--learning_rate 3e-5 \
--num_train_epochs 2 \
--max_seq_length 128 \
--doc_stride 32 \
--output_dir ./finetuned_fp32/bert-base-uncased \
--save_steps 0 \
--do_train \
--do_eval
```
## Post Training Quantization (PTQ)
### PTQ by calibrating and evaluating the finetuned FP32 model above:
```
python3 run_quant_qa.py \
--model_name_or_path ./finetuned_fp32/bert-base-uncased \
--dataset_name squad \
--calibrator percentile \
--percentile 99.99 \
--max_seq_length 128 \
--doc_stride 32 \
--output_dir ./calib/bert-base-uncased \
--save_steps 0 \
--do_calib \
--do_eval
```
### Export the INT8 PTQ model to ONNX
```
python3 run_quant_qa.py \
--model_name_or_path ./calib/bert-base-uncased \
--output_dir ./ \
--save_onnx \
--per_device_eval_batch_size 1 \
--max_seq_length 128 \
--doc_stride 32 \
--dataset_name squad \
--tokenizer_name bert-base-uncased
```
### Evaluate the INT8 PTQ ONNX model inference with TensorRT
```
python3 evaluate-hf-trt-qa.py \
--onnx_model_path=./model.onnx \
--output_dir ./ \
--per_device_eval_batch_size 64 \
--max_seq_length 128 \
--doc_stride 32 \
--dataset_name squad \
--tokenizer_name bert-base-uncased \
--int8 \
--seed 42
```
### Quantization options
Some useful options to support different implementations and optimizations. These should be specified for both calibration and finetuning.
|argument|description|
|--------|-----------|
|`--quant-per-tensor`| quantize weights with one quantization range per tensor |
|`--fuse-qkv` | use a single range (the max) for quantizing QKV weights and output activations |
|`--clip-gelu N` | clip the output of GELU to a maximum of N when quantizing (e.g. 10) |
|`--disable-dropout` | disable dropout for consistent activation ranges |
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/quant_trainer.py | # coding=utf-8
# Copyright 2021 NVIDIA Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Helper functions for training models with pytorch-quantization"""
import logging
import re
import pytorch_quantization
import pytorch_quantization.nn as quant_nn
import torch
from pytorch_quantization import calib
from pytorch_quantization.tensor_quant import QuantDescriptor
logger = logging.getLogger(__name__)
name_width = 50 # max width of layer names
qname_width = 70 # max width of quantizer names
# ========================================== Quant Trainer API ==========================================
def add_arguments(parser):
"""Add arguments to parser for functions defined in quant_trainer."""
group = parser.add_argument_group("quant_trainer arguments")
group.add_argument("--wprec", type=int, default=8, help="weight precision")
group.add_argument("--aprec", type=int, default=8, help="activation precision")
group.add_argument("--quant-per-tensor", action="store_true", help="per tensor weight scaling")
group.add_argument("--quant-disable", action="store_true", help="disable all quantizers")
group.add_argument("--quant-disable-embeddings", action="store_true", help="disable all embeddings quantizers")
group.add_argument("--quant-disable-keyword", type=str, nargs="+", help="disable quantizers by keyword")
group.add_argument("--quant-disable-layer-module", type=str, help="disable quantizers by keyword under layer.")
group.add_argument("--quant-enable-layer-module", type=str, help="enable quantizers by keyword under layer")
group.add_argument("--calibrator", default="max", help="which quantization range calibrator to use")
group.add_argument("--percentile", default=None, type=float, help="percentile for PercentileCalibrator")
group.add_argument("--fuse-qkv", action="store_true", help="use the same scale factor for qkv")
group.add_argument("--clip-gelu", metavar="N", type=float, help="clip gelu output maximum value to N")
group.add_argument(
"--recalibrate-weights",
action="store_true",
help=(
"recalibrate weight amaxes by taking the max of the weights."
" amaxes will be computed with the current quantization granularity (axis)."
),
)
def set_default_quantizers(args):
"""Set default quantizers before creating the model."""
if args.calibrator == "max":
calib_method = "max"
elif args.calibrator == "percentile":
if args.percentile is None:
raise ValueError("Specify --percentile when using percentile calibrator")
calib_method = "histogram"
elif args.calibrator == "mse":
calib_method = "histogram"
else:
raise ValueError(f"Invalid calibrator {args.calibrator}")
input_desc = QuantDescriptor(num_bits=args.aprec, calib_method=calib_method)
weight_desc = QuantDescriptor(num_bits=args.wprec, axis=(None if args.quant_per_tensor else (0,)))
quant_nn.QuantLinear.set_default_quant_desc_input(input_desc)
quant_nn.QuantLinear.set_default_quant_desc_weight(weight_desc)
def configure_model(model, args, calib=False, eval=False):
"""Function called before the training loop."""
logger.info("Configuring Model for Quantization")
logger.info(f"using quantization package {pytorch_quantization.__file__}")
if not calib:
if args.quant_disable_embeddings:
set_quantizer_by_name(model, ["embeddings"], which="weight", _disabled=True)
if args.quant_disable:
set_quantizer_by_name(model, [""], _disabled=True)
if args.quant_disable_keyword:
set_quantizer_by_name(model, args.quant_disable_keyword, _disabled=True)
if args.quant_disable_layer_module:
set_quantizer_by_name(model, [r"layer.\d+." + args.quant_disable_layer_module], _disabled=True)
if args.quant_enable_layer_module:
set_quantizer_by_name(model, [r"layer.\d+." + args.quant_enable_layer_module], _disabled=False)
if args.recalibrate_weights:
recalibrate_weights(model)
if args.fuse_qkv:
fuse_qkv(model, args)
if args.clip_gelu:
clip_gelu(model, args.clip_gelu)
# if args.local_rank in [-1, 0] and not calib:
print_quant_summary(model)
def enable_calibration(model):
"""Enable calibration of all *_input_quantizer modules in model."""
logger.info("Enabling Calibration")
for name, module in model.named_modules():
if name.endswith("_quantizer"):
if module._calibrator is not None:
module.disable_quant()
module.enable_calib()
else:
module.disable()
logger.info(f"{name:80}: {module}")
def finish_calibration(model, args):
"""Disable calibration and load amax for all "*_input_quantizer modules in model."""
logger.info("Loading calibrated amax")
for name, module in model.named_modules():
if name.endswith("_quantizer"):
if module._calibrator is not None:
if isinstance(module._calibrator, calib.MaxCalibrator):
module.load_calib_amax()
else:
module.load_calib_amax("percentile", percentile=args.percentile)
module.enable_quant()
module.disable_calib()
else:
module.enable()
model.cuda()
print_quant_summary(model)
# ========================================== Helper Function ==========================================
def fuse_qkv(model, args):
"""Adjust quantization ranges to match an implementation where the QKV projections are implemented with a single GEMM.
Force the weight and output scale factors to match by taking the max of (Q,K,V).
"""
def fuse3(qq, qk, qv):
for mod in [qq, qk, qv]:
if not hasattr(mod, "_amax"):
print(" WARNING: NO AMAX BUFFER")
return
q = qq._amax.detach().item()
k = qk._amax.detach().item()
v = qv._amax.detach().item()
amax = max(q, k, v)
qq._amax.fill_(amax)
qk._amax.fill_(amax)
qv._amax.fill_(amax)
logger.info(f" q={q:5.2f} k={k:5.2f} v={v:5.2f} -> {amax:5.2f}")
for name, mod in model.named_modules():
if name.endswith(".attention.self"):
logger.info(f"FUSE_QKV: {name:{name_width}}")
fuse3(mod.matmul_q_input_quantizer, mod.matmul_k_input_quantizer, mod.matmul_v_input_quantizer)
if args.quant_per_tensor:
fuse3(mod.query._weight_quantizer, mod.key._weight_quantizer, mod.value._weight_quantizer)
def clip_gelu(model, maxval):
"""Clip activations generated by GELU to maxval when quantized.
Implemented by adjusting the amax of the following input_quantizer.
"""
for name, mod in model.named_modules():
if name.endswith(".output.dense") and not name.endswith("attention.output.dense"):
amax_init = mod._input_quantizer._amax.data.detach().item()
mod._input_quantizer._amax.data.detach().clamp_(max=maxval)
amax = mod._input_quantizer._amax.data.detach().item()
logger.info(f"CLIP_GELU: {name:{name_width}} amax: {amax_init:5.2f} -> {amax:5.2f}")
def expand_amax(model):
"""Expand per-tensor amax to be per channel, where each channel is assigned the per-tensor amax."""
for name, mod in model.named_modules():
if hasattr(mod, "_weight_quantizer") and mod._weight_quantizer.axis is not None:
k = mod.weight.shape[0]
amax = mod._weight_quantizer._amax.detach()
mod._weight_quantizer._amax = torch.ones(k, dtype=amax.dtype, device=amax.device) * amax
print(f"expanding {name} {amax} -> {mod._weight_quantizer._amax}")
def recalibrate_weights(model):
"""Performs max calibration on the weights and updates amax."""
for name, mod in model.named_modules():
if hasattr(mod, "_weight_quantizer"):
if not hasattr(mod.weight_quantizer, "_amax"):
print("RECALIB: {name:{name_width}} WARNING: NO AMAX BUFFER")
continue
# determine which axes to reduce across
# e.g. a 4D tensor quantized per axis 0 should reduce over (1,2,3)
axis_set = set() if mod._weight_quantizer.axis is None else set(mod._weight_quantizer.axis)
reduce_axis = set(range(len(mod.weight.size()))) - axis_set
amax = pytorch_quantization.utils.reduce_amax(mod.weight, axis=reduce_axis, keepdims=True).detach()
logger.info(f"RECALIB: {name:{name_width}} {mod._weight_quantizer._amax.flatten()} -> {amax.flatten()}")
mod._weight_quantizer._amax = amax
def print_model_summary(model, name_width=25, line_width=180, ignore=None):
"""Print model quantization configuration."""
if ignore is None:
ignore = []
elif not isinstance(ignore, list):
ignore = [ignore]
name_width = 0
for name, mod in model.named_modules():
if not hasattr(mod, "weight"):
continue
name_width = max(name_width, len(name))
for name, mod in model.named_modules():
input_q = getattr(mod, "_input_quantizer", None)
weight_q = getattr(mod, "_weight_quantizer", None)
if not hasattr(mod, "weight"):
continue
if type(mod) in ignore:
continue
if [True for s in ignore if isinstance(s, str) and s in name]:
continue
act_str = f"Act:{input_q.extra_repr()}"
wgt_str = f"Wgt:{weight_q.extra_repr()}"
s = f"{name:{name_width}} {act_str} {wgt_str}"
if len(s) <= line_width:
logger.info(s)
else:
logger.info(f"{name:{name_width}} {act_str}")
logger.info(f'{" ":{name_width}} {wgt_str}')
def print_quant_summary(model):
"""Print summary of all quantizer modules in the model."""
count = 0
for name, mod in model.named_modules():
if isinstance(mod, pytorch_quantization.nn.TensorQuantizer):
print(f"{name:80} {mod}")
count += 1
print(f"{count} TensorQuantizers found in model")
def set_quantizer(name, mod, quantizer, k, v):
"""Set attributes for mod.quantizer."""
quantizer_mod = getattr(mod, quantizer, None)
if quantizer_mod is not None:
assert hasattr(quantizer_mod, k)
setattr(quantizer_mod, k, v)
else:
logger.warning(f"{name} has no {quantizer}")
def set_quantizers(name, mod, which="both", **kwargs):
"""Set quantizer attributes for mod."""
s = f"Warning: changing {which} quantizers of {name:{qname_width}}"
for k, v in kwargs.items():
s += f" {k}={v}"
if which in ["input", "both"]:
set_quantizer(name, mod, "_input_quantizer", k, v)
if which in ["weight", "both"]:
set_quantizer(name, mod, "_weight_quantizer", k, v)
logger.info(s)
def set_quantizer_by_name(model, names, **kwargs):
"""Set quantizer attributes for layers where name contains a substring in names."""
for name, mod in model.named_modules():
if hasattr(mod, "_input_quantizer") or hasattr(mod, "_weight_quantizer"):
for n in names:
if re.search(n, name):
set_quantizers(name, mod, **kwargs)
elif name.endswith("_quantizer"):
for n in names:
if re.search(n, name):
s = f"Warning: changing {name:{name_width}}"
for k, v in kwargs.items():
s += f" {k}={v}"
setattr(mod, k, v)
logger.info(s)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/quantization-qdqbert/run_quant_qa.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
# Copyright 2021 NVIDIA Corporation. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for question answering.
"""
# You can also adapt this script on your own question answering task. Pointers for this are left as comments.
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
import datasets
import quant_trainer
from datasets import load_dataset, load_metric
from trainer_quant_qa import QuestionAnsweringTrainer
from utils_qa import postprocess_qa_predictions
import transformers
from transformers import (
AutoTokenizer,
DataCollatorWithPadding,
EvalPrediction,
HfArgumentParser,
PreTrainedTokenizerFast,
QDQBertConfig,
QDQBertForQuestionAnswering,
TrainingArguments,
default_data_collator,
set_seed,
)
from transformers.trainer_utils import SchedulerType, get_last_checkpoint
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.9.0")
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/question-answering/requirements.txt")
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Path to directory to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
do_calib: bool = field(default=False, metadata={"help": "Whether to run calibration of quantization ranges."})
num_calib_batch: int = field(
default=4,
metadata={"help": "Number of batches for calibration. 0 will disable calibration "},
)
save_onnx: bool = field(default=False, metadata={"help": "Whether to save model to onnx."})
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to evaluate the perplexity on (a text file)."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=384,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
pad_to_max_length: bool = field(
default=True,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. If False, will pad the samples dynamically when"
" batching to the maximum length in the batch (which can be faster on GPU but will be slower on TPU)."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
version_2_with_negative: bool = field(
default=False, metadata={"help": "If true, some of the examples do not have an answer."}
)
null_score_diff_threshold: float = field(
default=0.0,
metadata={
"help": (
"The threshold used to select the null answer: if the best answer has a score that is less than "
"the score of the null answer minus this threshold, the null answer is selected for this example. "
"Only useful when `version_2_with_negative=True`."
)
},
)
doc_stride: int = field(
default=128,
metadata={"help": "When splitting up a long document into chunks, how much stride to take between chunks."},
)
n_best_size: int = field(
default=20,
metadata={"help": "The total number of n-best predictions to generate when looking for an answer."},
)
max_answer_length: int = field(
default=30,
metadata={
"help": (
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
)
},
)
def __post_init__(self):
if (
self.dataset_name is None
and self.train_file is None
and self.validation_file is None
and self.test_file is None
):
raise ValueError("Need either a dataset name or a training/validation file/test_file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
if self.test_file is not None:
extension = self.test_file.split(".")[-1]
assert extension in ["csv", "json"], "`test_file` should be a csv or a json file."
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
# quant_trainer arguments
quant_trainer.add_arguments(parser)
# if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# # If we pass only one argument to the script and it's the path to a json file,
# # let's parse it to get our arguments.
# model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
# else:
model_args, data_args, training_args, quant_trainer_args = parser.parse_args_into_dataclasses()
# setup QAT training args for scheduler (default to use cosine annealing learning rate schedule)
training_args.lr_scheduler_type = SchedulerType.COSINE
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
log_level = training_args.get_process_log_level()
logger.setLevel(log_level)
datasets.utils.logging.set_verbosity(log_level)
transformers.utils.logging.set_verbosity(log_level)
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
logger.info(f"Training/evaluation parameters {training_args}")
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
raw_datasets = load_dataset(
data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
extension = data_args.train_file.split(".")[-1]
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.validation_file.split(".")[-1]
if data_args.test_file is not None:
data_files["test"] = data_args.test_file
extension = data_args.test_file.split(".")[-1]
raw_datasets = load_dataset(extension, data_files=data_files, field="data", cache_dir=model_args.cache_dir)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
# set default quantization parameters before building model
quant_trainer.set_default_quantizers(quant_trainer_args)
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = QDQBertConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
tokenizer = AutoTokenizer.from_pretrained(
model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=True,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
model = QDQBertForQuestionAnswering.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
# Tokenizer check: this script requires a fast tokenizer.
if not isinstance(tokenizer, PreTrainedTokenizerFast):
raise ValueError(
"This example script only works for models that have a fast tokenizer. Checkout the big table of models at"
" https://huggingface.co/transformers/index.html#supported-frameworks to find the model types that meet"
" this requirement"
)
# Preprocessing the datasets.
# Preprocessing is slighlty different for training and evaluation.
if training_args.do_train or model_args.do_calib:
column_names = raw_datasets["train"].column_names
elif training_args.do_eval or model_args.save_onnx:
column_names = raw_datasets["validation"].column_names
else:
column_names = raw_datasets["test"].column_names
question_column_name = "question" if "question" in column_names else column_names[0]
context_column_name = "context" if "context" in column_names else column_names[1]
answer_column_name = "answers" if "answers" in column_names else column_names[2]
# Padding side determines if we do (question|context) or (context|question).
pad_on_right = tokenizer.padding_side == "right"
if data_args.max_seq_length > tokenizer.model_max_length:
logger.warning(
f"The max_seq_length passed ({data_args.max_seq_length}) is larger than the maximum length for the "
f"model ({tokenizer.model_max_length}). Using max_seq_length={tokenizer.model_max_length}."
)
max_seq_length = min(data_args.max_seq_length, tokenizer.model_max_length)
# Training preprocessing
def prepare_train_features(examples):
# Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results
# in one example possible giving several features when a context is long, each of those features having a
# context that overlaps a bit the context of the previous feature.
tokenized_examples = tokenizer(
examples[question_column_name if pad_on_right else context_column_name],
examples[context_column_name if pad_on_right else question_column_name],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_seq_length,
stride=data_args.doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length" if data_args.pad_to_max_length else False,
)
# Since one example might give us several features if it has a long context, we need a map from a feature to
# its corresponding example. This key gives us just that.
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
# The offset mappings will give us a map from token to character position in the original context. This will
# help us compute the start_positions and end_positions.
offset_mapping = tokenized_examples.pop("offset_mapping")
# Let's label those examples!
tokenized_examples["start_positions"] = []
tokenized_examples["end_positions"] = []
for i, offsets in enumerate(offset_mapping):
# We will label impossible answers with the index of the CLS token.
input_ids = tokenized_examples["input_ids"][i]
cls_index = input_ids.index(tokenizer.cls_token_id)
# Grab the sequence corresponding to that example (to know what is the context and what is the question).
sequence_ids = tokenized_examples.sequence_ids(i)
# One example can give several spans, this is the index of the example containing this span of text.
sample_index = sample_mapping[i]
answers = examples[answer_column_name][sample_index]
# If no answers are given, set the cls_index as answer.
if len(answers["answer_start"]) == 0:
tokenized_examples["start_positions"].append(cls_index)
tokenized_examples["end_positions"].append(cls_index)
else:
# Start/end character index of the answer in the text.
start_char = answers["answer_start"][0]
end_char = start_char + len(answers["text"][0])
# Start token index of the current span in the text.
token_start_index = 0
while sequence_ids[token_start_index] != (1 if pad_on_right else 0):
token_start_index += 1
# End token index of the current span in the text.
token_end_index = len(input_ids) - 1
while sequence_ids[token_end_index] != (1 if pad_on_right else 0):
token_end_index -= 1
# Detect if the answer is out of the span (in which case this feature is labeled with the CLS index).
if not (offsets[token_start_index][0] <= start_char and offsets[token_end_index][1] >= end_char):
tokenized_examples["start_positions"].append(cls_index)
tokenized_examples["end_positions"].append(cls_index)
else:
# Otherwise move the token_start_index and token_end_index to the two ends of the answer.
# Note: we could go after the last offset if the answer is the last word (edge case).
while token_start_index < len(offsets) and offsets[token_start_index][0] <= start_char:
token_start_index += 1
tokenized_examples["start_positions"].append(token_start_index - 1)
while offsets[token_end_index][1] >= end_char:
token_end_index -= 1
tokenized_examples["end_positions"].append(token_end_index + 1)
return tokenized_examples
if training_args.do_train or model_args.do_calib:
if "train" not in raw_datasets:
raise ValueError("--do_train requires a train dataset")
train_dataset = raw_datasets["train"]
if data_args.max_train_samples is not None:
# We will select sample from whole data if agument is specified
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
# Create train feature from dataset
with training_args.main_process_first(desc="train dataset map pre-processing"):
train_dataset = train_dataset.map(
prepare_train_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on train dataset",
)
if data_args.max_train_samples is not None:
# Number of samples might increase during Feature Creation, We select only specified max samples
max_train_samples = min(len(train_dataset), data_args.max_train_samples)
train_dataset = train_dataset.select(range(max_train_samples))
# Validation preprocessing
def prepare_validation_features(examples):
# Tokenize our examples with truncation and maybe padding, but keep the overflows using a stride. This results
# in one example possible giving several features when a context is long, each of those features having a
# context that overlaps a bit the context of the previous feature.
tokenized_examples = tokenizer(
examples[question_column_name if pad_on_right else context_column_name],
examples[context_column_name if pad_on_right else question_column_name],
truncation="only_second" if pad_on_right else "only_first",
max_length=max_seq_length,
stride=data_args.doc_stride,
return_overflowing_tokens=True,
return_offsets_mapping=True,
padding="max_length" if data_args.pad_to_max_length else False,
)
# Since one example might give us several features if it has a long context, we need a map from a feature to
# its corresponding example. This key gives us just that.
sample_mapping = tokenized_examples.pop("overflow_to_sample_mapping")
# For evaluation, we will need to convert our predictions to substrings of the context, so we keep the
# corresponding example_id and we will store the offset mappings.
tokenized_examples["example_id"] = []
for i in range(len(tokenized_examples["input_ids"])):
# Grab the sequence corresponding to that example (to know what is the context and what is the question).
sequence_ids = tokenized_examples.sequence_ids(i)
context_index = 1 if pad_on_right else 0
# One example can give several spans, this is the index of the example containing this span of text.
sample_index = sample_mapping[i]
tokenized_examples["example_id"].append(examples["id"][sample_index])
# Set to None the offset_mapping that are not part of the context so it's easy to determine if a token
# position is part of the context or not.
tokenized_examples["offset_mapping"][i] = [
(o if sequence_ids[k] == context_index else None)
for k, o in enumerate(tokenized_examples["offset_mapping"][i])
]
return tokenized_examples
if training_args.do_eval or model_args.save_onnx:
if "validation" not in raw_datasets:
raise ValueError("--do_eval requires a validation dataset")
eval_examples = raw_datasets["validation"]
if data_args.max_eval_samples is not None:
# We will select sample from whole data
max_eval_samples = min(len(eval_examples), data_args.max_eval_samples)
eval_examples = eval_examples.select(range(max_eval_samples))
# Validation Feature Creation
with training_args.main_process_first(desc="validation dataset map pre-processing"):
eval_dataset = eval_examples.map(
prepare_validation_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on validation dataset",
)
if data_args.max_eval_samples is not None:
# During Feature creation dataset samples might increase, we will select required samples again
max_eval_samples = min(len(eval_dataset), data_args.max_eval_samples)
eval_dataset = eval_dataset.select(range(max_eval_samples))
if training_args.do_predict:
if "test" not in raw_datasets:
raise ValueError("--do_predict requires a test dataset")
predict_examples = raw_datasets["test"]
if data_args.max_predict_samples is not None:
# We will select sample from whole data
predict_examples = predict_examples.select(range(data_args.max_predict_samples))
# Predict Feature Creation
with training_args.main_process_first(desc="prediction dataset map pre-processing"):
predict_dataset = predict_examples.map(
prepare_validation_features,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=column_names,
load_from_cache_file=not data_args.overwrite_cache,
desc="Running tokenizer on prediction dataset",
)
if data_args.max_predict_samples is not None:
# During Feature creation dataset samples might increase, we will select required samples again
max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
predict_dataset = predict_dataset.select(range(max_predict_samples))
# Data collator
# We have already padded to max length if the corresponding flag is True, otherwise we need to pad in the data
# collator.
data_collator = (
default_data_collator
if data_args.pad_to_max_length
else DataCollatorWithPadding(tokenizer, pad_to_multiple_of=8 if training_args.fp16 else None)
)
# Post-processing:
def post_processing_function(examples, features, predictions, stage="eval"):
# Post-processing: we match the start logits and end logits to answers in the original context.
predictions = postprocess_qa_predictions(
examples=examples,
features=features,
predictions=predictions,
version_2_with_negative=data_args.version_2_with_negative,
n_best_size=data_args.n_best_size,
max_answer_length=data_args.max_answer_length,
null_score_diff_threshold=data_args.null_score_diff_threshold,
output_dir=training_args.output_dir,
log_level=log_level,
prefix=stage,
)
# Format the result to the format the metric expects.
if data_args.version_2_with_negative:
formatted_predictions = [
{"id": k, "prediction_text": v, "no_answer_probability": 0.0} for k, v in predictions.items()
]
else:
formatted_predictions = [{"id": k, "prediction_text": v} for k, v in predictions.items()]
references = [{"id": ex["id"], "answers": ex[answer_column_name]} for ex in examples]
return EvalPrediction(predictions=formatted_predictions, label_ids=references)
metric = load_metric("squad_v2" if data_args.version_2_with_negative else "squad")
def compute_metrics(p: EvalPrediction):
return metric.compute(predictions=p.predictions, references=p.label_ids)
# Initialize our Trainer
trainer = QuestionAnsweringTrainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train or model_args.do_calib else None,
eval_dataset=eval_dataset if training_args.do_eval or model_args.save_onnx else None,
eval_examples=eval_examples if training_args.do_eval or model_args.save_onnx else None,
tokenizer=tokenizer,
data_collator=data_collator,
post_process_function=post_processing_function,
compute_metrics=compute_metrics,
quant_trainer_args=quant_trainer_args,
)
# Calibration
if model_args.do_calib:
logger.info("*** Calibrate ***")
results = trainer.calibrate()
trainer.save_model()
# Training
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
quant_trainer.configure_model(trainer.model, quant_trainer_args)
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model() # Saves the tokenizer too for easy upload
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
quant_trainer.configure_model(trainer.model, quant_trainer_args, eval=True)
metrics = trainer.evaluate()
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Prediction
if training_args.do_predict:
logger.info("*** Predict ***")
results = trainer.predict(predict_dataset, predict_examples)
metrics = results.metrics
max_predict_samples = (
data_args.max_predict_samples if data_args.max_predict_samples is not None else len(predict_dataset)
)
metrics["predict_samples"] = min(max_predict_samples, len(predict_dataset))
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
if training_args.push_to_hub:
kwargs = {"finetuned_from": model_args.model_name_or_path, "tasks": "question-answering"}
if data_args.dataset_name is not None:
kwargs["dataset_tags"] = data_args.dataset_name
if data_args.dataset_config_name is not None:
kwargs["dataset_args"] = data_args.dataset_config_name
kwargs["dataset"] = f"{data_args.dataset_name} {data_args.dataset_config_name}"
else:
kwargs["dataset"] = data_args.dataset_name
trainer.push_to_hub(**kwargs)
if model_args.save_onnx:
logger.info("Exporting model to onnx")
results = trainer.save_onnx(output_dir=training_args.output_dir)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mlm_wwm/requirements.txt | datasets >= 1.1.3
sentencepiece != 0.1.92
protobuf
ltp
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mlm_wwm/README.md | <!---
Copyright 2020 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
## Whole Word Mask Language Model
These scripts leverage the 🤗 Datasets library and the Trainer API. You can easily customize them to your needs if you
need extra processing on your datasets.
The following examples, will run on a datasets hosted on our [hub](https://huggingface.co/datasets) or with your own
text files for training and validation. We give examples of both below.
The BERT authors released a new version of BERT using Whole Word Masking in May 2019. Instead of masking randomly
selected tokens (which may be part of words), they mask randomly selected words (masking all the tokens corresponding
to that word). This technique has been refined for Chinese in [this paper](https://arxiv.org/abs/1906.08101).
To fine-tune a model using whole word masking, use the following script:
```bash
python run_mlm_wwm.py \
--model_name_or_path roberta-base \
--dataset_name wikitext \
--dataset_config_name wikitext-2-raw-v1 \
--do_train \
--do_eval \
--output_dir /tmp/test-mlm-wwm
```
For Chinese models, we need to generate a reference files (which requires the ltp library), because it's tokenized at
the character level.
**Q :** Why a reference file?
**A :** Suppose we have a Chinese sentence like: `我喜欢你` The original Chinese-BERT will tokenize it as
`['我','喜','欢','你']` (character level). But `喜欢` is a whole word. For whole word masking proxy, we need a result
like `['我','喜','##欢','你']`, so we need a reference file to tell the model which position of the BERT original token
should be added `##`.
**Q :** Why LTP ?
**A :** Cause the best known Chinese WWM BERT is [Chinese-BERT-wwm](https://github.com/ymcui/Chinese-BERT-wwm) by HIT.
It works well on so many Chines Task like CLUE (Chinese GLUE). They use LTP, so if we want to fine-tune their model,
we need LTP.
You could run the following:
```bash
export TRAIN_FILE=/path/to/train/file
export LTP_RESOURCE=/path/to/ltp/tokenizer
export BERT_RESOURCE=/path/to/bert/tokenizer
export SAVE_PATH=/path/to/data/ref.txt
python run_chinese_ref.py \
--file_name=$TRAIN_FILE \
--ltp=$LTP_RESOURCE \
--bert=$BERT_RESOURCE \
--save_path=$SAVE_PATH
```
Then you can run the script like this:
```bash
export TRAIN_FILE=/path/to/train/file
export VALIDATION_FILE=/path/to/validation/file
export TRAIN_REF_FILE=/path/to/train/chinese_ref/file
export VALIDATION_REF_FILE=/path/to/validation/chinese_ref/file
export OUTPUT_DIR=/tmp/test-mlm-wwm
python run_mlm_wwm.py \
--model_name_or_path roberta-base \
--train_file $TRAIN_FILE \
--validation_file $VALIDATION_FILE \
--train_ref_file $TRAIN_REF_FILE \
--validation_ref_file $VALIDATION_REF_FILE \
--do_train \
--do_eval \
--output_dir $OUTPUT_DIR
```
**Note1:** On TPU, you should the flag `--pad_to_max_length` to make sure all your batches have the same length.
**Note2:** And if you have any questions or something goes wrong when runing this code, don't hesitate to pin @wlhgtc.
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mlm_wwm/run_mlm_wwm.py | # coding=utf-8
# Copyright 2020 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning the library models for masked language modeling (BERT, ALBERT, RoBERTa...) with whole word masking on a
text file or a dataset.
Here is the full list of checkpoints on the hub that can be fine-tuned by this script:
https://huggingface.co/models?filter=fill-mask
"""
# You can also adapt this script on your own masked language modeling task. Pointers for this are left as comments.
import json
import logging
import math
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
from datasets import Dataset, load_dataset
import transformers
from transformers import (
CONFIG_MAPPING,
MODEL_FOR_MASKED_LM_MAPPING,
AutoConfig,
AutoModelForMaskedLM,
AutoTokenizer,
DataCollatorForWholeWordMask,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.trainer_utils import get_last_checkpoint, is_main_process
logger = logging.getLogger(__name__)
MODEL_CONFIG_CLASSES = list(MODEL_FOR_MASKED_LM_MAPPING.keys())
MODEL_TYPES = tuple(conf.model_type for conf in MODEL_CONFIG_CLASSES)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune, or train from scratch.
"""
model_name_or_path: Optional[str] = field(
default=None,
metadata={
"help": (
"The model checkpoint for weights initialization. Don't set if you want to train a model from scratch."
)
},
)
model_type: Optional[str] = field(
default=None,
metadata={"help": "If training from scratch, pass a model type from the list: " + ", ".join(MODEL_TYPES)},
)
config_overrides: Optional[str] = field(
default=None,
metadata={
"help": (
"Override some existing default config settings when a model is trained from scratch. Example: "
"n_embd=10,resid_pdrop=0.2,scale_attn_weights=false,summary_type=cls_index"
)
},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
tokenizer_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
use_fast_tokenizer: bool = field(
default=True,
metadata={"help": "Whether to use one of the fast tokenizer (backed by the tokenizers library) or not."},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
def __post_init__(self):
if self.config_overrides is not None and (self.config_name is not None or self.model_name_or_path is not None):
raise ValueError(
"--config_overrides can't be used in combination with --config_name or --model_name_or_path"
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
dataset_name: Optional[str] = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(default=None, metadata={"help": "The input training data file (a text file)."})
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate the perplexity on (a text file)."},
)
train_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input train ref data file for whole word masking in Chinese."},
)
validation_ref_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input validation ref data file for whole word masking in Chinese."},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
validation_split_percentage: Optional[int] = field(
default=5,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
max_seq_length: Optional[int] = field(
default=None,
metadata={
"help": (
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated. Default to the max input length of the model."
)
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
mlm_probability: float = field(
default=0.15, metadata={"help": "Ratio of tokens to mask for masked language modeling loss"}
)
pad_to_max_length: bool = field(
default=False,
metadata={
"help": (
"Whether to pad all samples to `max_seq_length`. "
"If False, will pad the samples dynamically when batching to the maximum length in the batch."
)
},
)
def __post_init__(self):
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`train_file` should be a csv, a json or a txt file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json", "txt"], "`validation_file` should be a csv, a json or a txt file."
def add_chinese_references(dataset, ref_file):
with open(ref_file, "r", encoding="utf-8") as f:
refs = [json.loads(line) for line in f.read().splitlines() if (len(line) > 0 and not line.isspace())]
assert len(dataset) == len(refs)
dataset_dict = {c: dataset[c] for c in dataset.column_names}
dataset_dict["chinese_ref"] = refs
return Dataset.from_dict(dataset_dict)
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets: you can either provide your own CSV/JSON/TXT training and evaluation files (see below)
# or just provide the name of one of the public datasets available on the hub at https://huggingface.co/datasets/
# (the dataset will be downloaded automatically from the datasets Hub).
#
# For CSV/JSON files, this script will use the column called 'text' or the first column if no column called
# 'text' is found. You can easily tweak this behavior (see below).
#
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name is not None:
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name)
if "validation" not in datasets.keys():
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[:{data_args.validation_split_percentage}%]",
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"train[{data_args.validation_split_percentage}%:]",
)
else:
data_files = {}
if data_args.train_file is not None:
data_files["train"] = data_args.train_file
if data_args.validation_file is not None:
data_files["validation"] = data_args.validation_file
extension = data_args.train_file.split(".")[-1]
if extension == "txt":
extension = "text"
datasets = load_dataset(extension, data_files=data_files)
# See more about loading any type of standard or custom dataset (from files, python dict, pandas DataFrame, etc) at
# https://huggingface.co/docs/datasets/loading_datasets.
# Load pretrained model and tokenizer
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config_kwargs = {
"cache_dir": model_args.cache_dir,
"revision": model_args.model_revision,
"use_auth_token": True if model_args.use_auth_token else None,
}
if model_args.config_name:
config = AutoConfig.from_pretrained(model_args.config_name, **config_kwargs)
elif model_args.model_name_or_path:
config = AutoConfig.from_pretrained(model_args.model_name_or_path, **config_kwargs)
else:
config = CONFIG_MAPPING[model_args.model_type]()
logger.warning("You are instantiating a new config instance from scratch.")
if model_args.config_overrides is not None:
logger.info(f"Overriding config: {model_args.config_overrides}")
config.update_from_string(model_args.config_overrides)
logger.info(f"New config: {config}")
tokenizer_kwargs = {
"cache_dir": model_args.cache_dir,
"use_fast": model_args.use_fast_tokenizer,
"revision": model_args.model_revision,
"use_auth_token": True if model_args.use_auth_token else None,
}
if model_args.tokenizer_name:
tokenizer = AutoTokenizer.from_pretrained(model_args.tokenizer_name, **tokenizer_kwargs)
elif model_args.model_name_or_path:
tokenizer = AutoTokenizer.from_pretrained(model_args.model_name_or_path, **tokenizer_kwargs)
else:
raise ValueError(
"You are instantiating a new tokenizer from scratch. This is not supported by this script. "
"You can do it from another script, save it, and load it from here, using --tokenizer_name."
)
if model_args.model_name_or_path:
model = AutoModelForMaskedLM.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
else:
logger.info("Training new model from scratch")
model = AutoModelForMaskedLM.from_config(config)
model.resize_token_embeddings(len(tokenizer))
# Preprocessing the datasets.
# First we tokenize all the texts.
if training_args.do_train:
column_names = datasets["train"].column_names
else:
column_names = datasets["validation"].column_names
text_column_name = "text" if "text" in column_names else column_names[0]
padding = "max_length" if data_args.pad_to_max_length else False
def tokenize_function(examples):
# Remove empty lines
examples["text"] = [line for line in examples["text"] if len(line) > 0 and not line.isspace()]
return tokenizer(examples["text"], padding=padding, truncation=True, max_length=data_args.max_seq_length)
tokenized_datasets = datasets.map(
tokenize_function,
batched=True,
num_proc=data_args.preprocessing_num_workers,
remove_columns=[text_column_name],
load_from_cache_file=not data_args.overwrite_cache,
)
# Add the chinese references if provided
if data_args.train_ref_file is not None:
tokenized_datasets["train"] = add_chinese_references(tokenized_datasets["train"], data_args.train_ref_file)
if data_args.validation_ref_file is not None:
tokenized_datasets["validation"] = add_chinese_references(
tokenized_datasets["validation"], data_args.validation_ref_file
)
# If we have ref files, need to avoid it removed by trainer
has_ref = data_args.train_ref_file or data_args.validation_ref_file
if has_ref:
training_args.remove_unused_columns = False
# Data collator
# This one will take care of randomly masking the tokens.
data_collator = DataCollatorForWholeWordMask(tokenizer=tokenizer, mlm_probability=data_args.mlm_probability)
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=tokenized_datasets["train"] if training_args.do_train else None,
eval_dataset=tokenized_datasets["validation"] if training_args.do_eval else None,
tokenizer=tokenizer,
data_collator=data_collator,
)
# Training
if training_args.do_train:
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif model_args.model_name_or_path is not None and os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model() # Saves the tokenizer too for easy upload
output_train_file = os.path.join(training_args.output_dir, "train_results.txt")
if trainer.is_world_process_zero():
with open(output_train_file, "w") as writer:
logger.info("***** Train results *****")
for key, value in sorted(train_result.metrics.items()):
logger.info(f" {key} = {value}")
writer.write(f"{key} = {value}\n")
# Need to save the state, since Trainer.save_model saves only the tokenizer with the model
trainer.state.save_to_json(os.path.join(training_args.output_dir, "trainer_state.json"))
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
eval_output = trainer.evaluate()
perplexity = math.exp(eval_output["eval_loss"])
results["perplexity"] = perplexity
output_eval_file = os.path.join(training_args.output_dir, "eval_results_mlm_wwm.txt")
if trainer.is_world_process_zero():
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results *****")
for key, value in sorted(results.items()):
logger.info(f" {key} = {value}")
writer.write(f"{key} = {value}\n")
return results
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mlm_wwm/run_chinese_ref.py | import argparse
import json
from typing import List
from ltp import LTP
from transformers.models.bert.tokenization_bert import BertTokenizer
def _is_chinese_char(cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def is_chinese(word: str):
# word like '180' or '身高' or '神'
for char in word:
char = ord(char)
if not _is_chinese_char(char):
return 0
return 1
def get_chinese_word(tokens: List[str]):
word_set = set()
for token in tokens:
chinese_word = len(token) > 1 and is_chinese(token)
if chinese_word:
word_set.add(token)
word_list = list(word_set)
return word_list
def add_sub_symbol(bert_tokens: List[str], chinese_word_set: set()):
if not chinese_word_set:
return bert_tokens
max_word_len = max([len(w) for w in chinese_word_set])
bert_word = bert_tokens
start, end = 0, len(bert_word)
while start < end:
single_word = True
if is_chinese(bert_word[start]):
l = min(end - start, max_word_len)
for i in range(l, 1, -1):
whole_word = "".join(bert_word[start : start + i])
if whole_word in chinese_word_set:
for j in range(start + 1, start + i):
bert_word[j] = "##" + bert_word[j]
start = start + i
single_word = False
break
if single_word:
start += 1
return bert_word
def prepare_ref(lines: List[str], ltp_tokenizer: LTP, bert_tokenizer: BertTokenizer):
ltp_res = []
for i in range(0, len(lines), 100):
res = ltp_tokenizer.pipeline(lines[i : i + 100], tasks=["cws"]).cws
res = [get_chinese_word(r) for r in res]
ltp_res.extend(res)
assert len(ltp_res) == len(lines)
bert_res = []
for i in range(0, len(lines), 100):
res = bert_tokenizer(lines[i : i + 100], add_special_tokens=True, truncation=True, max_length=512)
bert_res.extend(res["input_ids"])
assert len(bert_res) == len(lines)
ref_ids = []
for input_ids, chinese_word in zip(bert_res, ltp_res):
input_tokens = []
for id in input_ids:
token = bert_tokenizer._convert_id_to_token(id)
input_tokens.append(token)
input_tokens = add_sub_symbol(input_tokens, chinese_word)
ref_id = []
# We only save pos of chinese subwords start with ##, which mean is part of a whole word.
for i, token in enumerate(input_tokens):
if token[:2] == "##":
clean_token = token[2:]
# save chinese tokens' pos
if len(clean_token) == 1 and _is_chinese_char(ord(clean_token)):
ref_id.append(i)
ref_ids.append(ref_id)
assert len(ref_ids) == len(bert_res)
return ref_ids
def main(args):
# For Chinese (Ro)Bert, the best result is from : RoBERTa-wwm-ext (https://github.com/ymcui/Chinese-BERT-wwm)
# If we want to fine-tune these model, we have to use same tokenizer : LTP (https://github.com/HIT-SCIR/ltp)
with open(args.file_name, "r", encoding="utf-8") as f:
data = f.readlines()
data = [line.strip() for line in data if len(line) > 0 and not line.isspace()] # avoid delimiter like '\u2029'
ltp_tokenizer = LTP(args.ltp) # faster in GPU device
bert_tokenizer = BertTokenizer.from_pretrained(args.bert)
ref_ids = prepare_ref(data, ltp_tokenizer, bert_tokenizer)
with open(args.save_path, "w", encoding="utf-8") as f:
data = [json.dumps(ref) + "\n" for ref in ref_ids]
f.writelines(data)
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="prepare_chinese_ref")
parser.add_argument(
"--file_name",
required=False,
type=str,
default="./resources/chinese-demo.txt",
help="file need process, same as training data in lm",
)
parser.add_argument(
"--ltp",
required=False,
type=str,
default="./resources/ltp",
help="resources for LTP tokenizer, usually a path",
)
parser.add_argument(
"--bert",
required=False,
type=str,
default="./resources/robert",
help="resources for Bert tokenizer",
)
parser.add_argument(
"--save_path",
required=False,
type=str,
default="./resources/ref.txt",
help="path to save res",
)
args = parser.parse_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/run_eval.py | #!/usr/bin/env python
import argparse
import datetime
import json
import time
import warnings
from logging import getLogger
from pathlib import Path
from typing import Dict, List
import torch
from tqdm import tqdm
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
from utils import calculate_bleu, calculate_rouge, chunks, parse_numeric_n_bool_cl_kwargs, use_task_specific_params
logger = getLogger(__name__)
DEFAULT_DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
def generate_summaries_or_translations(
examples: List[str],
out_file: str,
model_name: str,
batch_size: int = 8,
device: str = DEFAULT_DEVICE,
fp16=False,
task="summarization",
prefix=None,
**generate_kwargs,
) -> Dict:
"""Save model.generate results to <out_file>, and return how long it took."""
fout = Path(out_file).open("w", encoding="utf-8")
model_name = str(model_name)
model = AutoModelForSeq2SeqLM.from_pretrained(model_name).to(device)
if fp16:
model = model.half()
tokenizer = AutoTokenizer.from_pretrained(model_name)
logger.info(f"Inferred tokenizer type: {tokenizer.__class__}") # if this is wrong, check config.model_type.
start_time = time.time()
# update config with task specific params
use_task_specific_params(model, task)
if prefix is None:
prefix = prefix or getattr(model.config, "prefix", "") or ""
for examples_chunk in tqdm(list(chunks(examples, batch_size))):
examples_chunk = [prefix + text for text in examples_chunk]
batch = tokenizer(examples_chunk, return_tensors="pt", truncation=True, padding="longest").to(device)
summaries = model.generate(
input_ids=batch.input_ids,
attention_mask=batch.attention_mask,
**generate_kwargs,
)
dec = tokenizer.batch_decode(summaries, skip_special_tokens=True, clean_up_tokenization_spaces=False)
for hypothesis in dec:
fout.write(hypothesis + "\n")
fout.flush()
fout.close()
runtime = int(time.time() - start_time) # seconds
n_obs = len(examples)
return {"n_obs": n_obs, "runtime": runtime, "seconds_per_sample": round(runtime / n_obs, 4)}
def datetime_now():
return datetime.datetime.now().strftime("%Y-%m-%d %H:%M:%S")
def run_generate(verbose=True):
"""
Takes input text, generates output, and then using reference calculates the BLEU scores.
The results are saved to a file and returned to the caller, and printed out unless ``verbose=False`` is passed.
Args:
verbose (:obj:`bool`, `optional`, defaults to :obj:`True`): print results to stdout
Returns:
a tuple: ``(scores, params}``
- ``scores``: a dict of scores data ``{'bleu': 39.6501, 'n_obs': 2000, 'runtime': 186, 'seconds_per_sample': 0.093}``
- ``params``: a dict of custom params, e.g. ``{'num_beams': 5, 'length_penalty': 0.8}``
"""
parser = argparse.ArgumentParser()
parser.add_argument("model_name", type=str, help="like facebook/bart-large-cnn,t5-base, etc.")
parser.add_argument("input_path", type=str, help="like cnn_dm/test.source")
parser.add_argument("save_path", type=str, help="where to save summaries")
parser.add_argument("--reference_path", type=str, required=False, help="like cnn_dm/test.target")
parser.add_argument("--score_path", type=str, required=False, default="metrics.json", help="where to save metrics")
parser.add_argument("--device", type=str, required=False, default=DEFAULT_DEVICE, help="cuda, cuda:1, cpu etc.")
parser.add_argument(
"--prefix", type=str, required=False, default=None, help="will be added to the begininng of src examples"
)
parser.add_argument("--task", type=str, default="summarization", help="used for task_specific_params + metrics")
parser.add_argument("--bs", type=int, default=8, required=False, help="batch size")
parser.add_argument(
"--n_obs", type=int, default=-1, required=False, help="How many observations. Defaults to all."
)
parser.add_argument("--fp16", action="store_true")
parser.add_argument("--dump-args", action="store_true", help="print the custom hparams with the results")
parser.add_argument(
"--info",
nargs="?",
type=str,
const=datetime_now(),
help=(
"use in conjunction w/ --dump-args to print with the results whatever other info you'd like, e.g."
" lang=en-ru. If no value is passed, the current datetime string will be used."
),
)
# Unspecified args like --num_beams=2 --decoder_start_token_id=4 are passed to model.generate
args, rest = parser.parse_known_args()
parsed_args = parse_numeric_n_bool_cl_kwargs(rest)
if parsed_args and verbose:
print(f"parsed the following generate kwargs: {parsed_args}")
with open(args.input_path) as f:
examples = [" " + x.rstrip() if "t5" in args.model_name else x.rstrip() for x in f.readlines()]
if args.n_obs > 0:
examples = examples[: args.n_obs]
Path(args.save_path).parent.mkdir(exist_ok=True)
if args.reference_path is None and Path(args.score_path).exists():
warnings.warn(f"score_path {args.score_path} will be overwritten unless you type ctrl-c.")
runtime_metrics = generate_summaries_or_translations(
examples,
args.save_path,
args.model_name,
batch_size=args.bs,
device=args.device,
fp16=args.fp16,
task=args.task,
prefix=args.prefix,
**parsed_args,
)
if args.reference_path is None:
return {}
# Compute scores
score_fn = calculate_bleu if "translation" in args.task else calculate_rouge
output_lns = [x.rstrip() for x in open(args.save_path).readlines()]
reference_lns = [x.rstrip() for x in open(args.reference_path).readlines()][: len(output_lns)]
scores: dict = score_fn(output_lns, reference_lns)
scores.update(runtime_metrics)
if args.dump_args:
scores.update(parsed_args)
if args.info:
scores["info"] = args.info
if verbose:
print(scores)
if args.score_path is not None:
json.dump(scores, open(args.score_path, "w"))
return scores
if __name__ == "__main__":
# Usage for MT:
# python run_eval.py MODEL_NAME $DATA_DIR/test.source $save_dir/test_translations.txt --reference_path $DATA_DIR/test.target --score_path $save_dir/test_bleu.json --task translation $@
run_generate(verbose=True)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/sentence_splitter.py | import re
from filelock import FileLock
try:
import nltk
NLTK_AVAILABLE = True
except (ImportError, ModuleNotFoundError):
NLTK_AVAILABLE = False
if NLTK_AVAILABLE:
with FileLock(".lock") as lock:
nltk.download("punkt", quiet=True)
def add_newline_to_end_of_each_sentence(x: str) -> str:
"""This was added to get rougeLsum scores matching published rougeL scores for BART and PEGASUS."""
re.sub("<n>", "", x) # remove pegasus newline char
assert NLTK_AVAILABLE, "nltk must be installed to separate newlines between sentences. (pip install nltk)"
return "\n".join(nltk.sent_tokenize(x))
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/precomputed_pseudo_labels.md | ### Saved Pseudo-Labels
These are the generations of various large models on various large **training** sets. All in all they took about 200 GPU hours to produce.
### Available Pseudo-labels
| Dataset | Model | Link | Rouge Scores | Notes
|---------|-----------------------------|----------------------------------------------------------------------------------------|--------------------|-------------------------------------------------------------------------------------------------------------
| XSUM | `facebook/bart-large-xsum` | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/bart_xsum_pl.tgz) | 49.8/28.0/42.5 |
| XSUM | `google/pegasus-xsum` | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/pegasus_xsum.tgz) | 53.3/32.7/46.5 |
| XSUM | `facebook/bart-large-xsum` | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/xsum_pl2_bart.tgz) | | Bart pseudolabels filtered to those with Rouge2 > 10.0 w GT.
| CNN/DM | `sshleifer/pegasus-cnn-ft-v2` | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/pegasus_cnn_cnn_pls.tgz) | 47.316/26.65/44.56 | do not worry about the fact that train.source is one line shorter.
| CNN/DM | `facebook/bart-large-cnn` | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/cnn_bart_pl.tgz) | | 5K (2%) are missing, there should be 282173
| CNN/DM | `google/pegasus-xsum` | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/pegasus_xsum_on_cnn.tgz) | 21.5/6.76/25 | extra labels for xsum distillation Used max_source_length=512, (and all other pegasus-xsum configuration).
| EN-RO | `Helsinki-NLP/opus-mt-en-ro` | [download](https://cdn-datasets.huggingface.co/pseudo/wmt_en_ro/opus_mt_en_ro.tgz) | |
| EN-RO | `facebook/mbart-large-en-ro` | [download](https://cdn-datasets.huggingface.co/pseudo/wmt_en_ro/mbart_large_en_ro.tgz) | |
(EN_RO = WMT 2016 English-Romanian).
Example Download Command:
```bash
curl -S https://cdn-datasets.huggingface.co/pseudo/xsum/bart_xsum_pl.tgz | tar -xvz -C .
```
### Generating New Pseudolabels
Here is the command I used to generate the pseudolabels in the second row of the table, after downloading XSUM from [here](https://cdn-datasets.huggingface.co/summarization/xsum.tar.gz).
```bash
python -m torch.distributed.launch --nproc_per_node=8 run_distributed_eval.py \
--model_name google/pegasus-xsum \
--save_dir pegasus_xsum \
--data_dir xsum \
--bs 8 --sync_timeout 60000 \
--max_source_length 512 \
--type_path train
```
+ These commands takes a while to run. For example, `pegasus_cnn_cnn_pls.tgz` took 8 hours on 8 GPUs.
+ Pegasus does not work in fp16 :(, Bart, mBART and Marian do.
+ Even if you have 1 GPU, `run_distributed_eval.py` is 10-20% faster than `run_eval.py` because it uses `SortishSampler` to minimize padding computation.
### Contributions
Feel free to contribute your own pseudolabels via PR. Add a row to this table with a new google drive link (or other command line downloadable link).
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/train_distilbart_xsum.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
python distillation.py \
--teacher facebook/bart-large-xsum --data_dir xsum \
--tokenizer_name facebook/bart-large-xsum \
--student_decoder_layers 6 --student_encoder_layers 12 \
--freeze_encoder --freeze_embeds \
--learning_rate=3e-4 \
--do_train \
--do_predict \
--fp16 --fp16_opt_level=O1 \
--val_check_interval 0.1 --n_val 1000 --eval_beams 2 --length_penalty=0.5 \
--max_target_length=60 --val_max_target_length=60 --test_max_target_length=100 \
--model_name_or_path IGNORED \
--alpha_hid=3. \
--train_batch_size=16 --eval_batch_size=16 --gradient_accumulation_steps=2 \
--sortish_sampler \
--num_train_epochs=6 \
--warmup_steps 500 \
--output_dir distilbart_xsum_12_6 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/finetune_t5.sh | # Add parent directory to python path to access lightning_base.py
export PYTHONPATH="../":"${PYTHONPATH}"
python finetune.py \
--data_dir=$CNN_DIR \
--learning_rate=3e-5 \
--train_batch_size=$BS \
--eval_batch_size=$BS \
--output_dir=$OUTPUT_DIR \
--max_source_length=512 \
--max_target_length=56 \
--val_check_interval=0.1 --n_val=200 \
--do_train --do_predict \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/requirements.txt | tensorboard
scikit-learn
psutil
sacrebleu
rouge-score
tensorflow_datasets
pytorch-lightning
matplotlib
git-python==1.0.3
faiss-cpu
streamlit
elasticsearch
nltk
pandas
datasets >= 1.1.3
fire
pytest
conllu
sentencepiece != 0.1.92
protobuf
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/finetune_bart_tiny.sh | # Script for verifying that run_bart_sum can be invoked from its directory
# Get tiny dataset with cnn_dm format (4 examples for train, val, test)
wget https://cdn-datasets.huggingface.co/summarization/cnn_tiny.tgz
tar -xzvf cnn_tiny.tgz
rm cnn_tiny.tgz
export OUTPUT_DIR_NAME=bart_utest_output
export CURRENT_DIR=${PWD}
export OUTPUT_DIR=${CURRENT_DIR}/${OUTPUT_DIR_NAME}
# Make output directory if it doesn't exist
mkdir -p $OUTPUT_DIR
# Add parent directory to python path to access lightning_base.py and testing_utils.py
export PYTHONPATH="../":"${PYTHONPATH}"
python finetune.py \
--data_dir=cnn_tiny/ \
--model_name_or_path=sshleifer/bart-tiny-random \
--learning_rate=3e-5 \
--train_batch_size=2 \
--eval_batch_size=2 \
--output_dir=$OUTPUT_DIR \
--num_train_epochs=1 \
--gpus=0 \
--do_train "$@"
rm -rf cnn_tiny
rm -rf $OUTPUT_DIR
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/make_student.py | import warnings
from pathlib import Path
from typing import List, Tuple, Union
import fire
from torch import nn
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer, PreTrainedModel
from transformers.utils import logging
logger = logging.get_logger(__name__)
def copy_layers(src_layers: nn.ModuleList, dest_layers: nn.ModuleList, layers_to_copy: List[int]) -> None:
layers_to_copy = nn.ModuleList([src_layers[i] for i in layers_to_copy])
assert len(dest_layers) == len(layers_to_copy), f"{len(dest_layers)} != {len(layers_to_copy)}"
dest_layers.load_state_dict(layers_to_copy.state_dict())
LAYERS_TO_COPY = {
# maps num layers in teacher -> num_layers in student -> which teacher layers to copy.
# 12: bart, 16: pegasus, 6: marian/Helsinki-NLP
12: {
1: [0], # This says that if the teacher has 12 layers and the student has 1, copy layer 0 of the teacher
2: [0, 6],
3: [0, 6, 11],
4: [0, 4, 8, 11],
6: [0, 2, 4, 7, 9, 11],
9: [0, 1, 2, 4, 5, 7, 9, 10, 11],
12: list(range(12)),
},
16: { # maps num layers in student -> which teacher layers to copy
1: [0],
2: [0, 15],
3: [0, 8, 15],
4: [0, 5, 10, 15],
6: [0, 3, 6, 9, 12, 15],
8: [0, 2, 4, 6, 8, 10, 12, 15],
9: [0, 1, 3, 5, 7, 9, 11, 13, 15],
12: [0, 1, 2, 3, 4, 5, 6, 7, 9, 11, 13, 15],
16: list(range(16)),
},
6: {1: [0], 2: [0, 5], 3: [0, 2, 5], 4: [0, 1, 3, 5], 6: list(range(6))},
}
LAYERS_TO_SUPERVISE = {
# maps num layers in student -> which teacher layers to copy.
6: {1: [5], 2: [3, 5], 3: [1, 4, 5], 4: [1, 2, 4, 5]},
12: {1: [11], 2: [5, 11], 3: [3, 7, 11], 6: [1, 3, 5, 8, 10, 11]},
16: {1: [15], 4: [4, 9, 12, 15], 8: [1, 3, 5, 7, 9, 11, 13, 15]},
}
def pick_layers_to_copy(n_student, n_teacher):
try:
val = LAYERS_TO_COPY[n_teacher][n_student]
return val
except KeyError:
if n_student != n_teacher:
warnings.warn(
f"no hardcoded layers to copy for teacher {n_teacher} -> student {n_student}, defaulting to first"
f" {n_student}"
)
return list(range(n_student))
def get_layers_to_supervise(n_student, n_teacher) -> List[int]:
"""Used or the --supervise_forward kwarg"""
if n_student > n_teacher:
raise ValueError(f"Cannot perform intermediate supervision for student {n_student} > teacher {n_teacher}")
elif n_teacher == n_student:
return list(range(n_teacher))
elif n_student == 1:
return [n_teacher - 1]
else:
return LAYERS_TO_SUPERVISE[n_teacher][n_student]
def create_student_by_copying_alternating_layers(
teacher: Union[str, PreTrainedModel],
save_path: Union[str, Path] = "student",
e: Union[int, None] = None,
d: Union[int, None] = None,
copy_first_teacher_layers=False,
e_layers_to_copy=None,
d_layers_to_copy=None,
**extra_config_kwargs,
) -> Tuple[PreTrainedModel, List[int], List[int]]:
"""Make a student by copying alternating layers from a teacher, save it to save_path.
Args:
teacher: str or PreTrainedModel if str, this will call AutoModelForSeq2SeqLM.from_pretrained(teacher) before
copying layers
save_path: where to save the student, defaults to student directory.
e: how many Encoder layers should the student have, default is fully copy of teacher
d: how many Decoder layers should the student have, default is fully copy of teacher
copy_first_teacher_layers: [bool] dont copy alternating layers, just the first e/d.
**extra_config_kwargs: extra kwargs to pass to the student, by default the teacher config is used.
Returns:
student: new, smaller model. (Also saves it to save_path)
e_layers_to_copy: list of which teacher encoder layers were used
d_layers_to_copy: list of which teacher decoder layers were used
"""
_msg = "encoder_layers and decoder_layers cannot be both None-- you would just have an identical teacher."
assert (e is not None) or (d is not None), _msg
if isinstance(teacher, str):
AutoTokenizer.from_pretrained(teacher).save_pretrained(save_path) # purely for convenience
teacher = AutoModelForSeq2SeqLM.from_pretrained(teacher).eval()
else:
assert isinstance(teacher, PreTrainedModel), f"teacher must be a model or string got type {type(teacher)}"
init_kwargs = teacher.config.to_diff_dict()
try:
teacher_e, teacher_d = teacher.config.encoder_layers, teacher.config.decoder_layers
if e is None:
e = teacher_e
if d is None:
d = teacher_d
init_kwargs.update({"encoder_layers": e, "decoder_layers": d})
except AttributeError: # T5
if hasattr(teacher.config, "num_encoder_layers"):
teacher_e, teacher_d = teacher.config.num_encoder_layers, teacher.config.num_decoder_layers
else:
teacher_e, teacher_d = teacher.config.num_layers, teacher.config.num_decoder_layers
if e is None:
e = teacher_e
if d is None:
d = teacher_d
if hasattr(teacher.config, "num_encoder_layers"):
init_kwargs.update({"num_encoder_layers": e, "num_decoder_layers": d})
else:
init_kwargs.update({"num_layers": e, "num_decoder_layers": d})
# Kwargs to instantiate student: teacher kwargs with updated layer numbers + **extra_config_kwargs
init_kwargs.update(extra_config_kwargs)
# Copy weights
student_cfg = teacher.config_class(**init_kwargs)
student = AutoModelForSeq2SeqLM.from_config(student_cfg)
# Start by copying the full teacher state dict this will copy the first N teacher layers to the student.
info = student.load_state_dict(teacher.state_dict(), strict=False)
assert info.missing_keys == [], info.missing_keys # every student key should have a teacher keys.
if copy_first_teacher_layers: # Our copying is done. We just log and save
e_layers_to_copy, d_layers_to_copy = list(range(e)), list(range(d))
logger.info(
f"Copied encoder layers {e_layers_to_copy} and decoder layers {d_layers_to_copy}. Saving them to"
f" {save_path}"
)
student.save_pretrained(save_path)
return student, e_layers_to_copy, d_layers_to_copy
# Decide which layers of the teacher to copy. Not exactly alternating -- we try to keep first and last layer.
if e_layers_to_copy is None:
e_layers_to_copy: List[int] = pick_layers_to_copy(e, teacher_e)
if d_layers_to_copy is None:
d_layers_to_copy: List[int] = pick_layers_to_copy(d, teacher_d)
try:
if hasattr(
teacher, "prophetnet"
): # For ProphetNet, student.model.encoder.layers is called student.prophetnet.encoder.layers
copy_layers(teacher.prophetnet.encoder.layers, student.prophetnet.encoder.layers, e_layers_to_copy)
copy_layers(teacher.prophetnet.decoder.layers, student.prophetnet.decoder.layers, d_layers_to_copy)
else:
copy_layers(teacher.model.encoder.layers, student.model.encoder.layers, e_layers_to_copy)
copy_layers(teacher.model.decoder.layers, student.model.decoder.layers, d_layers_to_copy)
except AttributeError: # For t5, student.model.encoder.layers is called student.encoder.block
copy_layers(teacher.encoder.block, student.encoder.block, e_layers_to_copy)
copy_layers(teacher.decoder.block, student.decoder.block, d_layers_to_copy)
logger.info(
f"Copied encoder layers {e_layers_to_copy} and decoder layers {d_layers_to_copy}. Saving them to {save_path}"
)
student.config.init_metadata = {
"teacher_type": teacher.config.model_type,
"copied_encoder_layers": e_layers_to_copy,
"copied_decoder_layers": d_layers_to_copy,
}
student.save_pretrained(save_path)
# Save information about copying for easier reproducibility
return student, e_layers_to_copy, d_layers_to_copy
if __name__ == "__main__":
fire.Fire(create_student_by_copying_alternating_layers)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/_test_seq2seq_examples.py | import argparse
import logging
import os
import sys
import tempfile
from pathlib import Path
import lightning_base
import pytest
import pytorch_lightning as pl
import torch
from convert_pl_checkpoint_to_hf import convert_pl_to_hf
from distillation import distill_main
from finetune import SummarizationModule, main
from huggingface_hub import list_models
from parameterized import parameterized
from run_eval import generate_summaries_or_translations
from torch import nn
from transformers import AutoConfig, AutoModelForSeq2SeqLM
from transformers.testing_utils import CaptureStderr, CaptureStdout, TestCasePlus, require_torch_gpu, slow
from utils import label_smoothed_nll_loss, lmap, load_json
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
CUDA_AVAILABLE = torch.cuda.is_available()
CHEAP_ARGS = {
"max_tokens_per_batch": None,
"supervise_forward": True,
"normalize_hidden": True,
"label_smoothing": 0.2,
"eval_max_gen_length": None,
"eval_beams": 1,
"val_metric": "loss",
"save_top_k": 1,
"adafactor": True,
"early_stopping_patience": 2,
"logger_name": "default",
"length_penalty": 0.5,
"cache_dir": "",
"task": "summarization",
"num_workers": 2,
"alpha_hid": 0,
"freeze_embeds": True,
"enc_only": False,
"tgt_suffix": "",
"resume_from_checkpoint": None,
"sortish_sampler": True,
"student_decoder_layers": 1,
"val_check_interval": 1.0,
"output_dir": "",
"fp16": False, # TODO(SS): set this to CUDA_AVAILABLE if ci installs apex or start using native amp
"no_teacher": False,
"fp16_opt_level": "O1",
"gpus": 1 if CUDA_AVAILABLE else 0,
"n_tpu_cores": 0,
"max_grad_norm": 1.0,
"do_train": True,
"do_predict": True,
"accumulate_grad_batches": 1,
"server_ip": "",
"server_port": "",
"seed": 42,
"model_name_or_path": "sshleifer/bart-tiny-random",
"config_name": "",
"tokenizer_name": "facebook/bart-large",
"do_lower_case": False,
"learning_rate": 0.3,
"lr_scheduler": "linear",
"weight_decay": 0.0,
"adam_epsilon": 1e-08,
"warmup_steps": 0,
"max_epochs": 1,
"train_batch_size": 2,
"eval_batch_size": 2,
"max_source_length": 12,
"max_target_length": 12,
"val_max_target_length": 12,
"test_max_target_length": 12,
"fast_dev_run": False,
"no_cache": False,
"n_train": -1,
"n_val": -1,
"n_test": -1,
"student_encoder_layers": 1,
"freeze_encoder": False,
"auto_scale_batch_size": False,
"overwrite_output_dir": False,
"student": None,
}
def _dump_articles(path: Path, articles: list):
content = "\n".join(articles)
Path(path).open("w").writelines(content)
ARTICLES = [" Sam ate lunch today.", "Sams lunch ingredients."]
SUMMARIES = ["A very interesting story about what I ate for lunch.", "Avocado, celery, turkey, coffee"]
T5_TINY = "patrickvonplaten/t5-tiny-random"
T5_TINIER = "sshleifer/t5-tinier-random"
BART_TINY = "sshleifer/bart-tiny-random"
MBART_TINY = "sshleifer/tiny-mbart"
MARIAN_TINY = "sshleifer/tiny-marian-en-de"
FSMT_TINY = "stas/tiny-wmt19-en-de"
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
logging.disable(logging.CRITICAL) # remove noisy download output from tracebacks
def make_test_data_dir(tmp_dir):
for split in ["train", "val", "test"]:
_dump_articles(os.path.join(tmp_dir, f"{split}.source"), ARTICLES)
_dump_articles(os.path.join(tmp_dir, f"{split}.target"), SUMMARIES)
return tmp_dir
class TestSummarizationDistiller(TestCasePlus):
@classmethod
def setUpClass(cls):
logging.disable(logging.CRITICAL) # remove noisy download output from tracebacks
return cls
@slow
@require_torch_gpu
def test_hub_configs(self):
"""I put require_torch_gpu cause I only want this to run with self-scheduled."""
model_list = list_models()
org = "sshleifer"
model_ids = [x.modelId for x in model_list if x.modelId.startswith(org)]
allowed_to_be_broken = ["sshleifer/blenderbot-3B", "sshleifer/blenderbot-90M"]
failures = []
for m in model_ids:
if m in allowed_to_be_broken:
continue
try:
AutoConfig.from_pretrained(m)
except Exception:
failures.append(m)
assert not failures, f"The following models could not be loaded through AutoConfig: {failures}"
def test_distill_no_teacher(self):
updates = {"student_encoder_layers": 2, "student_decoder_layers": 1, "no_teacher": True}
self._test_distiller_cli(updates)
def test_distill_checkpointing_with_teacher(self):
updates = {
"student_encoder_layers": 2,
"student_decoder_layers": 1,
"max_epochs": 4,
"val_check_interval": 0.25,
"alpha_hid": 2.0,
"model_name_or_path": "IGNORE_THIS_IT_DOESNT_GET_USED",
}
model = self._test_distiller_cli(updates, check_contents=False)
ckpts = list(Path(model.output_dir).glob("*.ckpt"))
self.assertEqual(1, len(ckpts))
transformer_ckpts = list(Path(model.output_dir).glob("**/*.bin"))
self.assertEqual(len(transformer_ckpts), 2)
examples = lmap(str.strip, Path(model.hparams.data_dir).joinpath("test.source").open().readlines())
out_path = tempfile.mktemp() # XXX: not being cleaned up
generate_summaries_or_translations(examples, out_path, str(model.output_dir / "best_tfmr"))
self.assertTrue(Path(out_path).exists())
out_path_new = self.get_auto_remove_tmp_dir()
convert_pl_to_hf(ckpts[0], transformer_ckpts[0].parent, out_path_new)
assert os.path.exists(os.path.join(out_path_new, "pytorch_model.bin"))
def test_loss_fn(self):
model = AutoModelForSeq2SeqLM.from_pretrained(BART_TINY)
input_ids, mask = model.dummy_inputs["input_ids"], model.dummy_inputs["attention_mask"]
target_ids = torch.tensor([[0, 4, 8, 2], [0, 8, 2, 1]], dtype=torch.long, device=model.device)
decoder_input_ids = target_ids[:, :-1].contiguous() # Why this line?
lm_labels = target_ids[:, 1:].clone() # why clone?
model_computed_loss = model(
input_ids, attention_mask=mask, decoder_input_ids=decoder_input_ids, labels=lm_labels, use_cache=False
).loss
logits = model(input_ids, attention_mask=mask, decoder_input_ids=decoder_input_ids, use_cache=False).logits
lprobs = nn.functional.log_softmax(logits, dim=-1)
smoothed_loss, nll_loss = label_smoothed_nll_loss(
lprobs, lm_labels, 0.1, ignore_index=model.config.pad_token_id
)
with self.assertRaises(AssertionError):
# TODO: understand why this breaks
self.assertEqual(nll_loss, model_computed_loss)
def test_distill_mbart(self):
updates = {
"student_encoder_layers": 2,
"student_decoder_layers": 1,
"num_train_epochs": 4,
"val_check_interval": 0.25,
"alpha_hid": 2.0,
"task": "translation",
"model_name_or_path": "IGNORE_THIS_IT_DOESNT_GET_USED",
"tokenizer_name": MBART_TINY,
"teacher": MBART_TINY,
"src_lang": "en_XX",
"tgt_lang": "ro_RO",
}
model = self._test_distiller_cli(updates, check_contents=False)
assert model.model.config.model_type == "mbart"
ckpts = list(Path(model.output_dir).glob("*.ckpt"))
self.assertEqual(1, len(ckpts))
transformer_ckpts = list(Path(model.output_dir).glob("**/*.bin"))
all_files = list(Path(model.output_dir).glob("best_tfmr/*"))
assert len(all_files) > 2
self.assertEqual(len(transformer_ckpts), 2)
def test_distill_t5(self):
updates = {
"student_encoder_layers": 1,
"student_decoder_layers": 1,
"alpha_hid": 2.0,
"teacher": T5_TINY,
"model_name_or_path": T5_TINY,
"tokenizer_name": T5_TINY,
}
self._test_distiller_cli(updates)
def test_distill_different_base_models(self):
updates = {
"teacher": T5_TINY,
"student": T5_TINIER,
"model_name_or_path": T5_TINIER,
"tokenizer_name": T5_TINIER,
}
self._test_distiller_cli(updates)
def _test_distiller_cli(self, updates, check_contents=True):
default_updates = {
"label_smoothing": 0.0,
"early_stopping_patience": -1,
"train_batch_size": 1,
"eval_batch_size": 2,
"max_epochs": 2,
"alpha_mlm": 0.2,
"alpha_ce": 0.8,
"do_predict": True,
"model_name_or_path": "sshleifer/tinier_bart",
"teacher": CHEAP_ARGS["model_name_or_path"],
"val_check_interval": 0.5,
}
default_updates.update(updates)
args_d: dict = CHEAP_ARGS.copy()
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
output_dir = self.get_auto_remove_tmp_dir()
args_d.update(data_dir=tmp_dir, output_dir=output_dir, **default_updates)
model = distill_main(argparse.Namespace(**args_d))
if not check_contents:
return model
contents = os.listdir(output_dir)
contents = {os.path.basename(p) for p in contents}
ckpt_files = [p for p in contents if p.endswith("ckpt")]
assert len(ckpt_files) > 0
self.assertIn("test_generations.txt", contents)
self.assertIn("test_results.txt", contents)
metrics = load_json(model.metrics_save_path)
last_step_stats = metrics["val"][-1]
self.assertGreaterEqual(last_step_stats["val_avg_gen_time"], 0.01)
self.assertGreaterEqual(1.0, last_step_stats["val_avg_gen_time"])
self.assertIsInstance(last_step_stats[f"val_avg_{model.val_metric}"], float)
desired_n_evals = int(args_d["max_epochs"] * (1 / args_d["val_check_interval"]) + 1)
self.assertEqual(len(metrics["val"]), desired_n_evals)
self.assertEqual(len(metrics["test"]), 1)
return model
class TestTheRest(TestCasePlus):
@parameterized.expand(
[T5_TINY, BART_TINY, MBART_TINY, MARIAN_TINY, FSMT_TINY],
)
def test_finetune(self, model):
args_d: dict = CHEAP_ARGS.copy()
task = "translation" if model in [MBART_TINY, MARIAN_TINY, FSMT_TINY] else "summarization"
args_d["label_smoothing"] = 0.1 if task == "translation" else 0
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
output_dir = self.get_auto_remove_tmp_dir()
args_d.update(
data_dir=tmp_dir,
model_name_or_path=model,
tokenizer_name=None,
train_batch_size=2,
eval_batch_size=2,
output_dir=output_dir,
do_predict=True,
task=task,
src_lang="en_XX",
tgt_lang="ro_RO",
freeze_encoder=True,
freeze_embeds=True,
)
assert "n_train" in args_d
args = argparse.Namespace(**args_d)
module = main(args)
input_embeds = module.model.get_input_embeddings()
assert not input_embeds.weight.requires_grad
if model == T5_TINY:
lm_head = module.model.lm_head
assert not lm_head.weight.requires_grad
assert (lm_head.weight == input_embeds.weight).all().item()
elif model == FSMT_TINY:
fsmt = module.model.model
embed_pos = fsmt.decoder.embed_positions
assert not embed_pos.weight.requires_grad
assert not fsmt.decoder.embed_tokens.weight.requires_grad
# check that embeds are not the same
assert fsmt.decoder.embed_tokens != fsmt.encoder.embed_tokens
else:
bart = module.model.model
embed_pos = bart.decoder.embed_positions
assert not embed_pos.weight.requires_grad
assert not bart.shared.weight.requires_grad
# check that embeds are the same
assert bart.decoder.embed_tokens == bart.encoder.embed_tokens
assert bart.decoder.embed_tokens == bart.shared
example_batch = load_json(module.output_dir / "text_batch.json")
assert isinstance(example_batch, dict)
assert len(example_batch) >= 4
def test_finetune_extra_model_args(self):
args_d: dict = CHEAP_ARGS.copy()
task = "summarization"
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
args_d.update(
data_dir=tmp_dir,
tokenizer_name=None,
train_batch_size=2,
eval_batch_size=2,
do_predict=False,
task=task,
src_lang="en_XX",
tgt_lang="ro_RO",
freeze_encoder=True,
freeze_embeds=True,
)
# test models whose config includes the extra_model_args
model = BART_TINY
output_dir = self.get_auto_remove_tmp_dir()
args_d1 = args_d.copy()
args_d1.update(
model_name_or_path=model,
output_dir=output_dir,
)
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
args_d1[p] = 0.5
args = argparse.Namespace(**args_d1)
model = main(args)
for p in extra_model_params:
assert getattr(model.config, p) == 0.5, f"failed to override the model config for param {p}"
# test models whose config doesn't include the extra_model_args
model = T5_TINY
output_dir = self.get_auto_remove_tmp_dir()
args_d2 = args_d.copy()
args_d2.update(
model_name_or_path=model,
output_dir=output_dir,
)
unsupported_param = "encoder_layerdrop"
args_d2[unsupported_param] = 0.5
args = argparse.Namespace(**args_d2)
with pytest.raises(Exception) as excinfo:
model = main(args)
assert str(excinfo.value) == f"model config doesn't have a `{unsupported_param}` attribute"
def test_finetune_lr_schedulers(self):
args_d: dict = CHEAP_ARGS.copy()
task = "summarization"
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
model = BART_TINY
output_dir = self.get_auto_remove_tmp_dir()
args_d.update(
data_dir=tmp_dir,
model_name_or_path=model,
output_dir=output_dir,
tokenizer_name=None,
train_batch_size=2,
eval_batch_size=2,
do_predict=False,
task=task,
src_lang="en_XX",
tgt_lang="ro_RO",
freeze_encoder=True,
freeze_embeds=True,
)
# emulate finetune.py
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = SummarizationModule.add_model_specific_args(parser, os.getcwd())
args = {"--help": True}
# --help test
with pytest.raises(SystemExit) as excinfo:
with CaptureStdout() as cs:
args = parser.parse_args(args)
assert False, "--help is expected to sys.exit"
assert excinfo.type == SystemExit
expected = lightning_base.arg_to_scheduler_metavar
assert expected in cs.out, "--help is expected to list the supported schedulers"
# --lr_scheduler=non_existing_scheduler test
unsupported_param = "non_existing_scheduler"
args = {f"--lr_scheduler={unsupported_param}"}
with pytest.raises(SystemExit) as excinfo:
with CaptureStderr() as cs:
args = parser.parse_args(args)
assert False, "invalid argument is expected to sys.exit"
assert excinfo.type == SystemExit
expected = f"invalid choice: '{unsupported_param}'"
assert expected in cs.err, f"should have bailed on invalid choice of scheduler {unsupported_param}"
# --lr_scheduler=existing_scheduler test
supported_param = "cosine"
args_d1 = args_d.copy()
args_d1["lr_scheduler"] = supported_param
args = argparse.Namespace(**args_d1)
model = main(args)
assert (
getattr(model.hparams, "lr_scheduler") == supported_param
), f"lr_scheduler={supported_param} shouldn't fail"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/distil_marian_no_teacher.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
export WANDB_PROJECT=dmar
export MAX_LEN=128
python finetune.py \
--learning_rate=3e-4 \
--do_train \
--do_predict \
--fp16 \
--val_check_interval 0.25 \
--data_dir $ENRO_DIR \
--max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
--freeze_encoder --freeze_embeds \
--train_batch_size=$BS --eval_batch_size=$BS \
--tokenizer_name $m --model_name_or_path $m \
--warmup_steps 500 --sortish_sampler --logger_name wandb \
--gpus 1 --fp16_opt_level=O1 --task translation --num_sanity_val_steps=0 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/dynamic_bs_example.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
export WANDB_PROJECT=dmar
export MAX_LEN=128
export m=sshleifer/student_marian_en_ro_6_1
python finetune.py \
--learning_rate=3e-4 \
--do_train \
--fp16 \
--data_dir wmt_en_ro \
--max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
--freeze_encoder --freeze_embeds \
--train_batch_size=48 --eval_batch_size=64 \
--tokenizer_name $m --model_name_or_path $m --num_train_epochs=1 \
--warmup_steps 500 --logger_name wandb --gpus 1 \
--fp16_opt_level=O1 --task translation \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs,
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, mode):
if mode == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs,
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
# TODO: remove with PyTorch 1.6 since pl uses native amp
if args.fp16:
train_params["precision"] = 16
train_params["amp_level"] = args.fp16_opt_level
if args.gpus > 1:
train_params["distributed_backend"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["accelerator"] = extra_train_kwargs.get("accelerator", None)
train_params["profiler"] = extra_train_kwargs.get("profiler", None)
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks,
logger=logger,
checkpoint_callback=checkpoint_callback,
**train_params,
)
if args.do_train:
trainer.fit(model)
return trainer
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/finetune.sh | # the proper usage is documented in the README, you need to specify data_dir, output_dir and model_name_or_path
# run ./finetune.sh --help to see all the possible options
python finetune.py \
--learning_rate=3e-5 \
--fp16 \
--gpus 1 \
--do_train \
--do_predict \
--n_val 1000 \
--val_check_interval 0.1 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/README.md | ## Sequence to Sequence Training and Evaluation
This directory contains examples for finetuning and evaluating transformers on summarization and translation tasks.
Author: Sam Shleifer (https://github.com/sshleifer)
### Supported Architectures
- `BartForConditionalGeneration` (and anything that inherits from it)
- `MarianMTModel`
- `PegasusForConditionalGeneration`
- `MBartForConditionalGeneration`
- `FSMTForConditionalGeneration`
- `T5ForConditionalGeneration`
# Note
⚠️ This project should be run with pytorch-lightning==1.0.4 which has a potential security vulnerability
## Datasets
#### XSUM
```bash
cd examples/contrib/pytorch-lightning/seq2seq
wget https://cdn-datasets.huggingface.co/summarization/xsum.tar.gz
tar -xzvf xsum.tar.gz
export XSUM_DIR=${PWD}/xsum
```
this should make a directory called `xsum/` with files like `test.source`.
To use your own data, copy that files format. Each article to be summarized is on its own line.
#### CNN/DailyMail
```bash
cd examples/contrib/pytorch-lightning/seq2seq
wget https://cdn-datasets.huggingface.co/summarization/cnn_dm_v2.tgz
tar -xzvf cnn_dm_v2.tgz # empty lines removed
mv cnn_cln cnn_dm
export CNN_DIR=${PWD}/cnn_dm
```
this should make a directory called `cnn_dm/` with 6 files.
#### WMT16 English-Romanian Translation Data
download with this command:
```bash
wget https://cdn-datasets.huggingface.co/translation/wmt_en_ro.tar.gz
tar -xzvf wmt_en_ro.tar.gz
export ENRO_DIR=${PWD}/wmt_en_ro
```
this should make a directory called `wmt_en_ro/` with 6 files.
#### WMT English-German
```bash
wget https://cdn-datasets.huggingface.co/translation/wmt_en_de.tgz
tar -xzvf wmt_en_de.tgz
export DATA_DIR=${PWD}/wmt_en_de
```
#### FSMT datasets (wmt)
Refer to the scripts starting with `eval_` under:
https://github.com/huggingface/transformers/tree/main/scripts/fsmt
#### Pegasus (multiple datasets)
Multiple eval datasets are available for download from:
https://github.com/stas00/porting/tree/master/datasets/pegasus
#### Your Data
If you are using your own data, it must be formatted as one directory with 6 files:
```
train.source
train.target
val.source
val.target
test.source
test.target
```
The `.source` files are the input, the `.target` files are the desired output.
### Potential issues
- native AMP (`--fp16` and no apex) may lead to a huge memory leak and require 10x gpu memory. This has been fixed in pytorch-nightly and the minimal official version to have this fix will be pytorch-1.8. Until then if you have to use mixed precision please use AMP only with pytorch-nightly or NVIDIA's apex. Reference: https://github.com/huggingface/transformers/issues/8403
### Tips and Tricks
General Tips:
- since you need to run from this folder, and likely need to modify code, the easiest workflow is fork transformers, clone your fork, and run `pip install -e .` before you get started.
- try `--freeze_encoder` or `--freeze_embeds` for faster training/larger batch size. (3hr per epoch with bs=8, see the "xsum_shared_task" command below)
- `fp16_opt_level=O1` (the default works best).
- In addition to the pytorch-lightning .ckpt checkpoint, a transformers checkpoint will be saved.
Load it with `BartForConditionalGeneration.from_pretrained(f'{output_dir}/best_tfmr)`.
- At the moment, `--do_predict` does not work in a multi-gpu setting. You need to use `evaluate_checkpoint` or the `run_eval.py` code.
- This warning can be safely ignored:
> "Some weights of BartForConditionalGeneration were not initialized from the model checkpoint at facebook/bart-large-xsum and are newly initialized: ['final_logits_bias']"
- Both finetuning and eval are 30% faster with `--fp16`. For that you need to [install apex](https://github.com/NVIDIA/apex#quick-start).
- Read scripts before you run them!
Summarization Tips:
- (summ) 1 epoch at batch size 1 for bart-large takes 24 hours and requires 13GB GPU RAM with fp16 on an NVIDIA-V100.
- If you want to run experiments on improving the summarization finetuning process, try the XSUM Shared Task (below). It's faster to train than CNNDM because the summaries are shorter.
- For CNN/DailyMail, the default `val_max_target_length` and `test_max_target_length` will truncate the ground truth labels, resulting in slightly higher rouge scores. To get accurate rouge scores, you should rerun calculate_rouge on the `{output_dir}/test_generations.txt` file saved by `trainer.test()`
- `--max_target_length=60 --val_max_target_length=60 --test_max_target_length=100 ` is a reasonable setting for XSUM.
- `wandb` can be used by specifying `--logger_name wandb`. It is useful for reproducibility. Specify the environment variable `WANDB_PROJECT='hf_xsum'` to do the XSUM shared task.
- If you are finetuning on your own dataset, start from `distilbart-cnn-12-6` if you want long summaries and `distilbart-xsum-12-6` if you want short summaries.
(It rarely makes sense to start from `bart-large` unless you are a researching finetuning methods).
**Update 2018-07-18**
Datasets: `LegacySeq2SeqDataset` will be used for all tokenizers without a `prepare_seq2seq_batch` method. Otherwise, `Seq2SeqDataset` will be used.
Future work/help wanted: A new dataset to support multilingual tasks.
### Finetuning Scripts
All finetuning bash scripts call finetune.py (or distillation.py) with reasonable command line arguments. They usually require extra command line arguments to work.
To see all the possible command line options, run:
```bash
./finetune.py --help
```
### Finetuning Training Params
To override the pretrained model's training params, you can pass them to `./finetune.sh`:
```bash
./finetune.sh \
[...]
--encoder_layerdrop 0.1 \
--decoder_layerdrop 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
```
### Summarization Finetuning
Run/modify `finetune.sh`
The following command should work on a 16GB GPU:
```bash
./finetune.sh \
--data_dir $XSUM_DIR \
--train_batch_size=1 \
--eval_batch_size=1 \
--output_dir=xsum_results \
--num_train_epochs 6 \
--model_name_or_path facebook/bart-large
```
There is a starter finetuning script for pegasus at `finetune_pegasus_xsum.sh`.
### Translation Finetuning
First, follow the wmt_en_ro download instructions.
Then you can finetune mbart_cc25 on english-romanian with the following command.
**Recommendation:** Read and potentially modify the fairly opinionated defaults in `train_mbart_cc25_enro.sh` script before running it.
Best performing command:
```bash
# optionally
export ENRO_DIR='wmt_en_ro' # Download instructions above
# export WANDB_PROJECT="MT" # optional
export MAX_LEN=128
export BS=4
./train_mbart_cc25_enro.sh --output_dir enro_finetune_baseline --label_smoothing 0.1 --fp16_opt_level=O1 --logger_name wandb --sortish_sampler
```
This should take < 6h/epoch on a 16GB v100 and achieve test BLEU above 26
To get results in line with fairseq, you need to do some postprocessing. (see `romanian_postprocessing.md`)
MultiGPU command
(using 8 GPUS as an example)
```bash
export ENRO_DIR='wmt_en_ro' # Download instructions above
# export WANDB_PROJECT="MT" # optional
export MAX_LEN=128
export BS=4
./train_mbart_cc25_enro.sh --output_dir enro_finetune_baseline --gpus 8 --logger_name wandb
```
### Finetuning Outputs
As you train, `output_dir` will be filled with files, that look kind of like this (comments are mine).
Some of them are metrics, some of them are checkpoints, some of them are metadata. Here is a quick tour:
```bash
output_dir
├── best_tfmr # this is a huggingface checkpoint generated by save_pretrained. It is the same model as the PL .ckpt file below
│ ├── config.json
│ ├── merges.txt
│ ├── pytorch_model.bin
│ ├── special_tokens_map.json
│ ├── tokenizer_config.json
│ └── vocab.json
├── git_log.json # repo, branch, and commit hash
├── val_avg_rouge2=0.1984-step_count=11.ckpt # this is a pytorch lightning checkpoint associated with the best val score. (it will be called BLEU for MT)
├── metrics.json # new validation metrics will continually be appended to this
├── student # this is a huggingface checkpoint generated by SummarizationDistiller. It is the student before it gets finetuned.
│ ├── config.json
│ └── pytorch_model.bin
├── test_generations.txt
# ^^ are the summaries or translations produced by your best checkpoint on the test data. Populated when training is done
├── test_results.txt # a convenience file with the test set metrics. This data is also in metrics.json['test']
├── hparams.pkl # the command line args passed after some light preprocessing. Should be saved fairly quickly.
```
After training, you can recover the best checkpoint by running
```python
from transformers import AutoModelForSeq2SeqLM
model = AutoModelForSeq2SeqLM.from_pretrained(f'{output_dir}/best_tfmr')
```
### Converting pytorch-lightning checkpoints
pytorch lightning ``-do_predict`` often fails, after you are done training, the best way to evaluate your model is to convert it.
This should be done for you, with a file called `{save_dir}/best_tfmr`.
If that file doesn't exist but you have a lightning `.ckpt` file, you can run
```bash
python convert_pl_checkpoint_to_hf.py PATH_TO_CKPT randomly_initialized_hf_model_path save_dir/best_tfmr
```
Then either `run_eval` or `run_distributed_eval` with `save_dir/best_tfmr` (see previous sections)
# Experimental Features
These features are harder to use and not always useful.
### Dynamic Batch Size for MT
`finetune.py` has a command line arg `--max_tokens_per_batch` that allows batches to be dynamically sized.
This feature can only be used:
- with fairseq installed
- on 1 GPU
- without sortish sampler
- after calling `./save_len_file.py $tok $data_dir`
For example,
```bash
./save_len_file.py Helsinki-NLP/opus-mt-en-ro wmt_en_ro
./dynamic_bs_example.sh --max_tokens_per_batch=2000 --output_dir benchmark_dynamic_bs
```
splits `wmt_en_ro/train` into 11,197 uneven lengthed batches and can finish 1 epoch in 8 minutes on a v100.
For comparison,
```bash
./dynamic_bs_example.sh --sortish_sampler --train_batch_size 48
```
uses 12,723 batches of length 48 and takes slightly more time 9.5 minutes.
The feature is still experimental, because:
+ we can make it much more robust if we have memory mapped/preprocessed datasets.
+ The speedup over sortish sampler is not that large at the moment.
# DistilBART
<!---It should be called distilling bart and pegasus, but I don't want to break the link in the paper.-->
This section describes all code and artifacts from our [Paper](http://arxiv.org/abs/2010.13002)
+ For the CNN/DailyMail dataset, (relatively longer, more extractive summaries), we found a simple technique that works, which we call "Shrink and Fine-tune", or SFT.
you just copy alternating layers from `facebook/bart-large-cnn` and fine-tune more on the cnn/dm data. `sshleifer/distill-pegasus-cnn-16-4`, `sshleifer/distilbart-cnn-12-6` and all other checkpoints under `sshleifer` that start with `distilbart-cnn` were trained this way.
+ For the XSUM dataset, training on pseudo-labels worked best for Pegasus (`sshleifer/distill-pegasus-16-4`), while training with KD worked best for `distilbart-xsum-12-6`
+ For `sshleifer/dbart-xsum-12-3`
+ We ran 100s experiments, and didn't want to document 100s of commands. If you want a command to replicate a figure from the paper that is not documented below, feel free to ask on the [forums](https://discuss.huggingface.co/t/seq2seq-distillation-methodology-questions/1270) and tag `@sshleifer`.
+ You can see the performance tradeoffs of model sizes [here](https://docs.google.com/spreadsheets/d/1EkhDMwVO02m8jCD1cG3RoFPLicpcL1GQHTQjfvDYgIM/edit#gid=0).
and more granular timing results [here](https://docs.google.com/spreadsheets/d/1EkhDMwVO02m8jCD1cG3RoFPLicpcL1GQHTQjfvDYgIM/edit#gid=1753259047&range=B2:I23).
### Evaluation
use [run_distributed_eval](./run_distributed_eval.py), with the following convenient alias
```bash
deval () {
proc=$1
m=$2
dd=$3
sd=$4
shift
shift
shift
shift
python -m torch.distributed.launch --nproc_per_node=$proc run_distributed_eval.py \
--model_name $m --save_dir $sd --data_dir $dd $@
}
```
On a 1 GPU system, here are four commands (that assume `xsum`, `cnn_dm` are downloaded, cmd-F for those links in this file).
`distilBART`:
```bash
deval 1 sshleifer/distilbart-xsum-12-3 xsum dbart_12_3_xsum_eval --fp16 # --help for more choices.
deval 1 sshleifer/distilbart-cnn_dm-12-6 cnn_dm dbart_12_6_cnn_eval --fp16
```
`distill-pegasus`:
```bash
deval 1 sshleifer/distill-pegasus-cnn-16-4 cnn_dm dpx_cnn_eval
deval 1 sshleifer/distill-pegasus-xsum-16-4 xsum dpx_xsum_eval
```
### Distillation
+ For all of the following commands, you can get roughly equivalent result and faster run times by passing `--num_beams=4`. That's not what we did for the paper.
+ Besides the KD section, you can also run commands with the built-in transformers trainer. See, for example, [builtin_trainer/train_distilbart_cnn.sh](./builtin_trainer/train_distilbart_cnn.sh).
+ Large performance deviations (> 5X slower or more than 0.5 Rouge-2 worse), should be reported.
+ Multi-gpu (controlled with `--gpus` should work, but might require more epochs).
#### Recommended Workflow
+ Get your dataset in the right format. (see 6 files above).
+ Find a teacher model [Pegasus](https://huggingface.co/models?search=pegasus) (slower, better ROUGE) or `facebook/bart-large-xsum`/`facebook/bart-large-cnn` (faster, slightly lower.).
Choose the checkpoint where the corresponding dataset is most similar (or identical to) your dataset.
+ Follow the sections in order below. You can stop after SFT if you are satisfied, or move on to pseudo-labeling if you want more performance.
+ student size: If you want a close to free 50% speedup, cut the decoder in half. If you want a larger speedup, cut it in 4.
+ If your SFT run starts at a validation ROUGE-2 that is more than 10 pts below the teacher's validation ROUGE-2, you have a bug. Switching to a more expensive technique will not help. Try setting a breakpoint and looking at generation and truncation defaults/hyper-parameters, and share your experience on the forums!
#### Initialization
We use [make_student.py](./make_student.py) to copy alternating layers from the teacher, and save the resulting model to disk
```bash
python make_student.py facebook/bart-large-xsum --save_path dbart_xsum_12_3 -e 12 -d 3
```
or for `pegasus-xsum`
```bash
python make_student.py google/pegasus-xsum --save_path dpx_xsum_16_4 --e 16 --d 4
```
we now have an initialized student saved to `dbart_xsum_12_3`, which we will use for the following commands.
+ Extension: To replicate more complicated initialize experiments in section 6.1, or try your own. Use the `create_student_by_copying_alternating_layers` function.
#### Pegasus
+ The following commands are written for BART and will require, at minimum, the following modifications
+ reduce batch size, and increase gradient accumulation steps so that the product `gpus * batch size * gradient_accumulation_steps = 256`. We used `--learning-rate` = 1e-4 * gradient accumulation steps.
+ don't use fp16
+ `--tokenizer_name google/pegasus-large`
### SFT (No Teacher Distillation)
You don't need `distillation.py`, you can just run:
```bash
python finetune.py \
--data_dir xsum \
--freeze_encoder --freeze_embeds \
--learning_rate=3e-4 \
--do_train \
--do_predict \
--fp16 --fp16_opt_level=O1 \
--val_check_interval 0.1 --n_val 1000 --eval_beams 2 --length_penalty=0.5 \
--max_target_length=60 --val_max_target_length=60 --test_max_target_length=100 \
--model_name_or_path dbart_xsum_12_3 \
--train_batch_size=64 --eval_batch_size=64 \
--sortish_sampler \
--num_train_epochs=6 \
--warmup_steps 500 \
--output_dir distilbart_xsum_sft_12_3 --gpus 1
```
+ Note: The command that produced `sshleifer/distilbart-cnn-12-6` is at [train_distilbart_cnn.sh](./[train_distilbart_cnn.sh)
```bash
./train_distilbart_cnn.sh
```
<!--- runtime: 6H on NVIDIA RTX 24GB GPU -->
+ Tip: You can get the same simple distillation logic by using `distillation.py --no_teacher ` followed by identical arguments as the ones in `train_distilbart_cnn.sh`.
If you are using `wandb` and comparing the two distillation methods, using this entry point will make your logs consistent,
because you will have the same hyper-parameters logged in every run.
### Pseudo-Labeling
+ You don't need `distillation.py`.
+ Instructions to generate pseudo-labels and use pre-computed pseudo-labels can be found [here](./precomputed_pseudo_labels.md).
Simply run `finetune.py` with one of those pseudo-label datasets as `--data_dir` (`DATA`, below).
```bash
python finetune.py \
--teacher facebook/bart-large-xsum --data_dir DATA \
--freeze_encoder --freeze_embeds \
--learning_rate=3e-4 \
--do_train \
--do_predict \
--fp16 --fp16_opt_level=O1 \
--val_check_interval 0.1 --n_val 1000 --eval_beams 2 --length_penalty=0.5 \
--max_target_length=60 --val_max_target_length=60 --test_max_target_length=100 \
--model_name_or_path dbart_xsum_12_3 \
--train_batch_size=32 --eval_batch_size=32 \
--sortish_sampler \
--num_train_epochs=5 \
--warmup_steps 500 \
--output_dir dbart_xsum_12_3_PL --gpus 1 --logger_name wandb
```
To combine datasets, as in Section 6.2, try something like:
```bash
curl -S https://cdn-datasets.huggingface.co/pseudo/xsum/bart_xsum_pl.tgz | tar -xvz -C .
curl -S https://cdn-datasets.huggingface.co/pseudo/xsum/pegasus_xsum.tgz | tar -xvz -C .
curl -S https://cdn-datasets.huggingface.co/summarization/xsum.tar.gz | tar -xvz -C .
mkdir all_pl
cat bart_xsum_pl/train.source pegasus_xsum/train.source xsum/train.source > all_pl/train.source
cat bart_xsum_pl/train.target pegasus_xsum/train.target xsum/train.target > all_pl/train.target
cp xsum/val* all_pl
cp xsum/test* all_pl
```
then use `all_pl` as DATA in the command above.
#### Direct Knowledge Distillation (KD)
+ In this method, we use try to enforce that the student and teacher produce similar encoder_outputs, logits, and hidden_states using `SummarizationDistiller`.
+ This method was used for `sshleifer/distilbart-xsum-12-6`, `6-6`, and `9-6` checkpoints were produced.
+ You must use [`distillation.py`](./distillation.py). Note that this command initializes the student for you.
The command that produced `sshleifer/distilbart-xsum-12-6` is at [./train_distilbart_xsum.sh](train_distilbart_xsum.sh)
```bash
./train_distilbart_xsum.sh --logger_name wandb --gpus 1
```
+ Expected ROUGE-2 between 21.3 and 21.6, run time ~13H.
+ direct KD + Pegasus is VERY slow and works best with `--supervise_forward --normalize_hidden`.
<!--- runtime: 13H on V-100 16GB GPU. -->
### Citation
```bibtex
@misc{shleifer2020pretrained,
title={Pre-trained Summarization Distillation},
author={Sam Shleifer and Alexander M. Rush},
year={2020},
eprint={2010.13002},
archivePrefix={arXiv},
primaryClass={cs.CL}
}
@article{Wolf2019HuggingFacesTS,
title={HuggingFace's Transformers: State-of-the-art Natural Language Processing},
author={Thomas Wolf and Lysandre Debut and Victor Sanh and Julien Chaumond and Clement Delangue and Anthony Moi and Pierric Cistac and Tim Rault and Rémi Louf and Morgan Funtowicz and Joe Davison and Sam Shleifer and Patrick von Platen and Clara Ma and Yacine Jernite and Julien Plu and Canwen Xu and Teven Le Scao and Sylvain Gugger and Mariama Drame and Quentin Lhoest and Alexander M. Rush},
journal={ArXiv},
year={2019},
volume={abs/1910.03771}
}
```
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/_test_seq2seq_examples_multi_gpu.py | # as due to their complexity multi-gpu tests could impact other tests, and to aid debug we have those in a separate module.
import os
import sys
from pathlib import Path
import torch
from transformers.testing_utils import TestCasePlus, execute_subprocess_async, require_torch_multi_gpu
from utils import load_json
CUDA_AVAILABLE = torch.cuda.is_available()
ARTICLES = [" Sam ate lunch today.", "Sams lunch ingredients."]
SUMMARIES = ["A very interesting story about what I ate for lunch.", "Avocado, celery, turkey, coffee"]
CHEAP_ARGS = {
"max_tokens_per_batch": None,
"supervise_forward": True,
"normalize_hidden": True,
"label_smoothing": 0.2,
"eval_max_gen_length": None,
"eval_beams": 1,
"val_metric": "loss",
"save_top_k": 1,
"adafactor": True,
"early_stopping_patience": 2,
"logger_name": "default",
"length_penalty": 0.5,
"cache_dir": "",
"task": "summarization",
"num_workers": 2,
"alpha_hid": 0,
"freeze_embeds": True,
"enc_only": False,
"tgt_suffix": "",
"resume_from_checkpoint": None,
"sortish_sampler": True,
"student_decoder_layers": 1,
"val_check_interval": 1.0,
"output_dir": "",
"fp16": False, # TODO(SS): set this to CUDA_AVAILABLE if ci installs apex or start using native amp
"no_teacher": False,
"fp16_opt_level": "O1",
"gpus": 1 if CUDA_AVAILABLE else 0,
"n_tpu_cores": 0,
"max_grad_norm": 1.0,
"do_train": True,
"do_predict": True,
"accumulate_grad_batches": 1,
"server_ip": "",
"server_port": "",
"seed": 42,
"model_name_or_path": "sshleifer/bart-tiny-random",
"config_name": "",
"tokenizer_name": "facebook/bart-large",
"do_lower_case": False,
"learning_rate": 0.3,
"lr_scheduler": "linear",
"weight_decay": 0.0,
"adam_epsilon": 1e-08,
"warmup_steps": 0,
"max_epochs": 1,
"train_batch_size": 2,
"eval_batch_size": 2,
"max_source_length": 12,
"max_target_length": 12,
"val_max_target_length": 12,
"test_max_target_length": 12,
"fast_dev_run": False,
"no_cache": False,
"n_train": -1,
"n_val": -1,
"n_test": -1,
"student_encoder_layers": 1,
"freeze_encoder": False,
"auto_scale_batch_size": False,
"overwrite_output_dir": False,
"student": None,
}
def _dump_articles(path: Path, articles: list):
content = "\n".join(articles)
Path(path).open("w").writelines(content)
def make_test_data_dir(tmp_dir):
for split in ["train", "val", "test"]:
_dump_articles(os.path.join(tmp_dir, f"{split}.source"), ARTICLES)
_dump_articles(os.path.join(tmp_dir, f"{split}.target"), SUMMARIES)
return tmp_dir
class TestSummarizationDistillerMultiGPU(TestCasePlus):
@classmethod
def setUpClass(cls):
return cls
@require_torch_multi_gpu
def test_multi_gpu(self):
updates = {
"no_teacher": True,
"freeze_encoder": True,
"gpus": 2,
"overwrite_output_dir": True,
"sortish_sampler": True,
}
self._test_distiller_cli_fork(updates, check_contents=False)
def _test_distiller_cli_fork(self, updates, check_contents=True):
default_updates = {
"label_smoothing": 0.0,
"early_stopping_patience": -1,
"train_batch_size": 1,
"eval_batch_size": 2,
"max_epochs": 2,
"alpha_mlm": 0.2,
"alpha_ce": 0.8,
"do_predict": True,
"model_name_or_path": "sshleifer/tinier_bart",
"teacher": CHEAP_ARGS["model_name_or_path"],
"val_check_interval": 0.5,
}
default_updates.update(updates)
args_d: dict = CHEAP_ARGS.copy()
tmp_dir = make_test_data_dir(tmp_dir=self.get_auto_remove_tmp_dir())
output_dir = self.get_auto_remove_tmp_dir()
args_d.update(data_dir=tmp_dir, output_dir=output_dir, **default_updates)
def convert(k, v):
if k in ["tgt_suffix", "server_ip", "server_port", "out", "n_tpu_cores"]:
return ""
if v is False or v is None:
return ""
if v is True: # or len(str(v))==0:
return f"--{k}"
return f"--{k}={v}"
cli_args = [x for x in (convert(k, v) for k, v in args_d.items()) if len(x)]
cmd = [sys.executable, f"{self.test_file_dir}/distillation.py"] + cli_args
execute_subprocess_async(cmd, env=self.get_env())
contents = os.listdir(output_dir)
contents = {os.path.basename(p) for p in contents}
ckpt_files = [p for p in contents if p.endswith("ckpt")]
assert len(ckpt_files) > 0
self.assertIn("test_generations.txt", contents)
self.assertIn("test_results.txt", contents)
# get the following from the module, (we don't have access to `model` here)
metrics_save_path = os.path.join(output_dir, "metrics.json")
val_metric = "rouge2"
metrics = load_json(metrics_save_path)
# {'test': [{'test_avg_loss': 10.63731575012207, 'test_avg_rouge1': 0.0, 'test_avg_rouge2': 0.0, 'test_avg_rougeL': 0.0, 'test_avg_gen_time': 0.1822289228439331, 'test_avg_gen_len': 142.0, 'step_count': 1}]}
print(metrics)
last_step_stats = metrics["val"][-1]
self.assertGreaterEqual(last_step_stats["val_avg_gen_time"], 0.01)
self.assertIsInstance(last_step_stats[f"val_avg_{val_metric}"], float)
self.assertEqual(len(metrics["test"]), 1)
desired_n_evals = int(args_d["max_epochs"] * (1 / args_d["val_check_interval"]) / 2 + 1)
self.assertEqual(len(metrics["val"]), desired_n_evals)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/utils.py | import itertools
import json
import linecache
import math
import os
import pickle
import socket
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List, Tuple, Union
import git
import numpy as np
import torch
import torch.distributed as dist
from rouge_score import rouge_scorer, scoring
from sacrebleu import corpus_bleu
from sentence_splitter import add_newline_to_end_of_each_sentence
from torch import nn
from torch.utils.data import Dataset, Sampler
from transformers import BartTokenizer, EvalPrediction, PreTrainedTokenizer, T5Tokenizer
from transformers.file_utils import cached_property
from transformers.models.bart.modeling_bart import shift_tokens_right
try:
from fairseq.data.data_utils import batch_by_size
FAIRSEQ_AVAILABLE = True
except (ImportError, ModuleNotFoundError):
FAIRSEQ_AVAILABLE = False
def label_smoothed_nll_loss(lprobs, target, epsilon, ignore_index=-100):
"""From fairseq"""
if target.dim() == lprobs.dim() - 1:
target = target.unsqueeze(-1)
nll_loss = -lprobs.gather(dim=-1, index=target)
smooth_loss = -lprobs.sum(dim=-1, keepdim=True)
if ignore_index is not None:
pad_mask = target.eq(ignore_index)
nll_loss.masked_fill_(pad_mask, 0.0)
smooth_loss.masked_fill_(pad_mask, 0.0)
else:
nll_loss = nll_loss.squeeze(-1)
smooth_loss = smooth_loss.squeeze(-1)
nll_loss = nll_loss.sum() # mean()? Scared to break other math.
smooth_loss = smooth_loss.sum()
eps_i = epsilon / lprobs.size(-1)
loss = (1.0 - epsilon) * nll_loss + eps_i * smooth_loss
return loss, nll_loss
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def calculate_bleu(output_lns, refs_lns, **kwargs) -> dict:
"""Uses sacrebleu's corpus_bleu implementation."""
return {"bleu": round(corpus_bleu(output_lns, [refs_lns], **kwargs).score, 4)}
def build_compute_metrics_fn(task_name: str, tokenizer: PreTrainedTokenizer) -> Callable[[EvalPrediction], Dict]:
def non_pad_len(tokens: np.ndarray) -> int:
return np.count_nonzero(tokens != tokenizer.pad_token_id)
def decode_pred(pred: EvalPrediction) -> Tuple[List[str], List[str]]:
pred_str = tokenizer.batch_decode(pred.predictions, skip_special_tokens=True)
label_str = tokenizer.batch_decode(pred.label_ids, skip_special_tokens=True)
pred_str = lmap(str.strip, pred_str)
label_str = lmap(str.strip, label_str)
return pred_str, label_str
def summarization_metrics(pred: EvalPrediction) -> Dict:
pred_str, label_str = decode_pred(pred)
rouge: Dict = calculate_rouge(pred_str, label_str)
summ_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
rouge.update({"gen_len": summ_len})
return rouge
def translation_metrics(pred: EvalPrediction) -> Dict:
pred_str, label_str = decode_pred(pred)
bleu: Dict = calculate_bleu(pred_str, label_str)
gen_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
bleu.update({"gen_len": gen_len})
return bleu
compute_metrics_fn = summarization_metrics if "summarization" in task_name else translation_metrics
return compute_metrics_fn
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class AbstractSeq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
prefix="",
**dataset_kwargs,
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.len_file = Path(data_dir).joinpath(type_path + ".len")
if os.path.exists(self.len_file):
self.src_lens = pickle_load(self.len_file)
self.used_char_len = False
else:
self.src_lens = self.get_char_lens(self.src_file)
self.used_char_len = True
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix if prefix is not None else ""
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.pad_token_id = self.tokenizer.pad_token_id
self.dataset_kwargs = dataset_kwargs
dataset_kwargs.update({"add_prefix_space": True} if isinstance(self.tokenizer, BartTokenizer) else {})
def __len__(self):
return len(self.src_lens)
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
@cached_property
def tgt_lens(self):
"""Length in characters of target documents"""
return self.get_char_lens(self.tgt_file)
def make_sortish_sampler(self, batch_size, distributed=False, shuffle=True, **kwargs):
if distributed:
return DistributedSortishSampler(self, batch_size, shuffle=shuffle, **kwargs)
else:
return SortishSampler(self.src_lens, batch_size, shuffle=shuffle)
def make_dynamic_sampler(self, max_tokens_per_batch=1024, **kwargs):
assert FAIRSEQ_AVAILABLE, "Dynamic batch size requires `pip install fairseq`"
assert not self.used_char_len, "You must call python make_len_file.py before calling make_dynamic_sampler"
sorted_indices = list(self.make_sortish_sampler(1024, shuffle=False))
def num_tokens_in_example(i):
return min(self.src_lens[i], self.max_target_length)
# call fairseq cython function
batch_sampler: List[List[int]] = batch_by_size(
sorted_indices,
num_tokens_fn=num_tokens_in_example,
max_tokens=max_tokens_per_batch,
required_batch_size_multiple=64,
)
shuffled_batches = [batch_sampler[i] for i in np.random.permutation(range(len(batch_sampler)))]
# move the largest batch to the front to OOM quickly (uses an approximation for padding)
approximate_toks_per_batch = [max(self.src_lens[i] for i in batch) * len(batch) for batch in shuffled_batches]
largest_batch_idx = np.argmax(approximate_toks_per_batch)
shuffled_batches[0], shuffled_batches[largest_batch_idx] = (
shuffled_batches[largest_batch_idx],
shuffled_batches[0],
)
return shuffled_batches
def __getitem__(self, item):
raise NotImplementedError("You must implement this")
def collate_fn(self, batch):
raise NotImplementedError("You must implement this")
class LegacySeq2SeqDataset(AbstractSeq2SeqDataset):
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
"""Call tokenizer on src and tgt_lines"""
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
source_inputs = self.encode_line(self.tokenizer, source_line, self.max_source_length)
target_inputs = self.encode_line(self.tokenizer, tgt_line, self.max_target_length)
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"labels": target_ids,
}
def encode_line(self, tokenizer, line, max_length, pad_to_max_length=True, return_tensors="pt"):
"""Only used by LegacyDataset"""
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
**self.dataset_kwargs,
)
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["labels"] for x in batch])
pad_token_id = self.pad_token_id
y = trim_batch(target_ids, pad_token_id)
source_ids, source_mask = trim_batch(input_ids, pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"labels": y,
}
return batch
class Seq2SeqDataset(AbstractSeq2SeqDataset):
"""A dataset that calls prepare_seq2seq_batch."""
def __getitem__(self, index) -> Dict[str, str]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
return {"tgt_texts": tgt_line, "src_texts": source_line, "id": index - 1}
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
"""Call prepare_seq2seq_batch."""
batch_encoding: Dict[str, torch.Tensor] = self.tokenizer.prepare_seq2seq_batch(
[x["src_texts"] for x in batch],
tgt_texts=[x["tgt_texts"] for x in batch],
max_length=self.max_source_length,
max_target_length=self.max_target_length,
return_tensors="pt",
**self.dataset_kwargs,
).data
batch_encoding["ids"] = torch.tensor([x["id"] for x in batch])
return batch_encoding
class Seq2SeqDataCollator:
def __init__(self, tokenizer, data_args, tpu_num_cores=None):
self.tokenizer = tokenizer
self.pad_token_id = tokenizer.pad_token_id
assert (
self.pad_token_id is not None
), f"pad_token_id is not defined for ({self.tokenizer.__class__.__name__}), it must be defined."
self.data_args = data_args
self.tpu_num_cores = tpu_num_cores
self.dataset_kwargs = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) else {}
if data_args.src_lang is not None:
self.dataset_kwargs["src_lang"] = data_args.src_lang
if data_args.tgt_lang is not None:
self.dataset_kwargs["tgt_lang"] = data_args.tgt_lang
def __call__(self, batch) -> Dict[str, torch.Tensor]:
if hasattr(self.tokenizer, "prepare_seq2seq_batch"):
batch = self._encode(batch)
input_ids, attention_mask, labels = (
batch["input_ids"],
batch["attention_mask"],
batch["labels"],
)
else:
input_ids = torch.stack([x["input_ids"] for x in batch])
attention_mask = torch.stack([x["attention_mask"] for x in batch])
labels = torch.stack([x["labels"] for x in batch])
labels = trim_batch(labels, self.pad_token_id)
input_ids, attention_mask = trim_batch(input_ids, self.pad_token_id, attention_mask=attention_mask)
if isinstance(self.tokenizer, T5Tokenizer):
decoder_input_ids = self._shift_right_t5(labels)
else:
decoder_input_ids = shift_tokens_right(labels, self.pad_token_id)
batch = {
"input_ids": input_ids,
"attention_mask": attention_mask,
"decoder_input_ids": decoder_input_ids,
"labels": labels,
}
return batch
def _shift_right_t5(self, input_ids):
# shift inputs to the right
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[..., 1:] = input_ids[..., :-1].clone()
shifted_input_ids[..., 0] = self.pad_token_id
return shifted_input_ids
def _encode(self, batch) -> Dict[str, torch.Tensor]:
batch_encoding = self.tokenizer.prepare_seq2seq_batch(
[x["src_texts"] for x in batch],
tgt_texts=[x["tgt_texts"] for x in batch],
max_length=self.data_args.max_source_length,
max_target_length=self.data_args.max_target_length,
padding="max_length" if self.tpu_num_cores is not None else "longest", # TPU hack
return_tensors="pt",
**self.dataset_kwargs,
)
return batch_encoding.data
class SortishSampler(Sampler):
"Go through the text data by order of src length with a bit of randomness. From fastai repo."
def __init__(self, data, batch_size, shuffle=True):
self.data, self.bs, self.shuffle = data, batch_size, shuffle
def __len__(self) -> int:
return len(self.data)
def __iter__(self):
return iter(sortish_sampler_indices(self.data, self.bs, shuffle=self.shuffle))
def sortish_sampler_indices(data: List, bs: int, shuffle=True) -> np.array:
"Go through the text data by order of src length with a bit of randomness. From fastai repo."
if not shuffle:
return np.argsort(np.array(data) * -1)
def key_fn(i):
return data[i]
idxs = np.random.permutation(len(data))
sz = bs * 50
ck_idx = [idxs[i : i + sz] for i in range(0, len(idxs), sz)]
sort_idx = np.concatenate([sorted(s, key=key_fn, reverse=True) for s in ck_idx])
sz = bs
ck_idx = [sort_idx[i : i + sz] for i in range(0, len(sort_idx), sz)]
max_ck = np.argmax([key_fn(ck[0]) for ck in ck_idx]) # find the chunk with the largest key,
ck_idx[0], ck_idx[max_ck] = ck_idx[max_ck], ck_idx[0] # then make sure it goes first.
sort_idx = np.concatenate(np.random.permutation(ck_idx[1:])) if len(ck_idx) > 1 else np.array([], dtype=int)
sort_idx = np.concatenate((ck_idx[0], sort_idx))
return sort_idx
class DistributedSortishSampler(Sampler):
"""Copied from torch DistributedSampler"""
def __init__(self, dataset, batch_size, num_replicas=None, rank=None, add_extra_examples=True, shuffle=True):
if num_replicas is None:
if not dist.is_available():
raise RuntimeError("Requires distributed package to be available")
num_replicas = dist.get_world_size()
if rank is None:
if not dist.is_available():
raise RuntimeError("Requires distributed package to be available")
rank = dist.get_rank()
self.dataset = dataset
self.num_replicas = num_replicas
self.rank = rank
self.epoch = 0
if add_extra_examples:
self.num_samples = int(math.ceil(len(self.dataset) * 1.0 / self.num_replicas))
self.total_size = self.num_samples * self.num_replicas
else:
self.total_size = len(dataset)
self.num_samples = len(self.available_indices)
self.batch_size = batch_size
self.add_extra_examples = add_extra_examples
self.shuffle = shuffle
def __iter__(self) -> Iterable:
g = torch.Generator()
g.manual_seed(self.epoch)
sortish_data = [self.dataset.src_lens[i] for i in self.available_indices]
sortish_indices = sortish_sampler_indices(sortish_data, self.batch_size, shuffle=self.shuffle)
indices = [self.available_indices[i] for i in sortish_indices]
assert len(indices) == self.num_samples
return iter(indices)
@cached_property
def available_indices(self) -> np.array:
indices = list(range(len(self.dataset)))
# add extra samples to make it evenly divisible
indices += indices[: (self.total_size - len(indices))]
assert len(indices) == self.total_size
# subsample
available_indices = indices[self.rank : self.total_size : self.num_replicas]
return available_indices
def __len__(self):
return self.num_samples
def set_epoch(self, epoch):
self.epoch = epoch
logger = getLogger(__name__)
def use_task_specific_params(model, task):
"""Update config with summarization specific params."""
task_specific_params = model.config.task_specific_params
if task_specific_params is not None:
pars = task_specific_params.get(task, {})
logger.info(f"using task specific params for {task}: {pars}")
model.config.update(pars)
def pickle_load(path):
"""pickle.load(path)"""
with open(path, "rb") as f:
return pickle.load(f)
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def flatten_list(summary_ids: List[List]):
return list(itertools.chain.from_iterable(summary_ids))
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
try:
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
except TypeError:
return {
"repo_id": None,
"repo_sha": None,
"repo_branch": None,
"hostname": None,
}
ROUGE_KEYS = ["rouge1", "rouge2", "rougeL", "rougeLsum"]
def extract_rouge_mid_statistics(dct):
new_dict = {}
for k1, v1 in dct.items():
mid = v1.mid
new_dict[k1] = {stat: round(getattr(mid, stat), 4) for stat in ["precision", "recall", "fmeasure"]}
return new_dict
def calculate_rouge(
pred_lns: List[str],
tgt_lns: List[str],
use_stemmer=True,
rouge_keys=ROUGE_KEYS,
return_precision_and_recall=False,
bootstrap_aggregation=True,
newline_sep=True,
) -> Dict:
"""Calculate rouge using rouge_scorer package.
Args:
pred_lns: list of summaries generated by model
tgt_lns: list of groundtruth summaries (e.g. contents of val.target)
use_stemmer: Bool indicating whether Porter stemmer should be used to
strip word suffixes to improve matching.
rouge_keys: which metrics to compute, defaults to rouge1, rouge2, rougeL, rougeLsum
return_precision_and_recall: (False) whether to also return precision and recall.
bootstrap_aggregation: whether to do the typical bootstrap resampling of scores. Defaults to True, if False
this function returns a collections.defaultdict[metric: list of values for each observation for each subscore]``
newline_sep:(default=True) whether to add newline between sentences. This is essential for calculation rougeL
on multi sentence summaries (CNN/DM dataset).
Returns:
Dict[score: value] if aggregate else defaultdict(list) keyed by rouge_keys
"""
scorer = rouge_scorer.RougeScorer(rouge_keys, use_stemmer=use_stemmer)
aggregator = scoring.BootstrapAggregator()
for pred, tgt in zip(tgt_lns, pred_lns):
# rougeLsum expects "\n" separated sentences within a summary
if newline_sep:
pred = add_newline_to_end_of_each_sentence(pred)
tgt = add_newline_to_end_of_each_sentence(tgt)
scores = scorer.score(pred, tgt)
aggregator.add_scores(scores)
if bootstrap_aggregation:
result = aggregator.aggregate()
if return_precision_and_recall:
return extract_rouge_mid_statistics(result) # here we return dict
else:
return {k: round(v.mid.fmeasure * 100, 4) for k, v in result.items()}
else:
return aggregator._scores # here we return defaultdict(list)
# Utilities for freezing parameters and checking whether they are frozen
def freeze_params(model: nn.Module):
"""Set requires_grad=False for each of model.parameters()"""
for par in model.parameters():
par.requires_grad = False
def freeze_embeds(model):
"""Freeze token embeddings and positional embeddings for bart, just token embeddings for t5."""
model_type = model.config.model_type
if model_type == "t5":
freeze_params(model.shared)
for d in [model.encoder, model.decoder]:
freeze_params(d.embed_tokens)
elif model_type == "fsmt":
for d in [model.model.encoder, model.model.decoder]:
freeze_params(d.embed_positions)
freeze_params(d.embed_tokens)
else:
freeze_params(model.model.shared)
for d in [model.model.encoder, model.model.decoder]:
freeze_params(d.embed_positions)
freeze_params(d.embed_tokens)
def grad_status(model: nn.Module) -> Iterable:
return (par.requires_grad for par in model.parameters())
def any_requires_grad(model: nn.Module) -> bool:
return any(grad_status(model))
def assert_all_frozen(model):
model_grads: List[bool] = list(grad_status(model))
n_require_grad = sum(lmap(int, model_grads))
npars = len(model_grads)
assert not any(model_grads), f"{n_require_grad/npars:.1%} of {npars} weights require grad"
def assert_not_all_frozen(model):
model_grads: List[bool] = list(grad_status(model))
npars = len(model_grads)
assert any(model_grads), f"none of {npars} weights require grad"
def parse_numeric_n_bool_cl_kwargs(unparsed_args: List[str]) -> Dict[str, Union[int, float, bool]]:
"""
Parse an argv list of unspecified command line args to a dict.
Assumes all values are either numeric or boolean in the form of true/false.
"""
result = {}
assert len(unparsed_args) % 2 == 0, f"got odd number of unparsed args: {unparsed_args}"
num_pairs = len(unparsed_args) // 2
for pair_num in range(num_pairs):
i = 2 * pair_num
assert unparsed_args[i].startswith("--")
if unparsed_args[i + 1].lower() == "true":
value = True
elif unparsed_args[i + 1].lower() == "false":
value = False
else:
try:
value = int(unparsed_args[i + 1])
except ValueError:
value = float(unparsed_args[i + 1]) # this can raise another informative ValueError
result[unparsed_args[i][2:]] = value
return result
def write_txt_file(ordered_tgt, path):
f = Path(path).open("w")
for ln in ordered_tgt:
f.write(ln + "\n")
f.flush()
def chunks(lst, n):
"""Yield successive n-sized chunks from lst."""
for i in range(0, len(lst), n):
yield lst[i : i + n]
def check_output_dir(args, expected_items=0):
"""
Checks whether to bail out if output_dir already exists and has more than expected_items in it
`args`: needs to have the following attributes of `args`:
- output_dir
- do_train
- overwrite_output_dir
`expected_items`: normally 0 (default) - i.e. empty dir, but in some cases a few files are expected (e.g. recovery from OOM)
"""
if (
os.path.exists(args.output_dir)
and len(os.listdir(args.output_dir)) > expected_items
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
f"Output directory ({args.output_dir}) already exists and "
f"has {len(os.listdir(args.output_dir))} items in it (expected {expected_items} items). "
"Use --overwrite_output_dir to overcome."
)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/distil_marian_enro_teacher.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
export WANDB_PROJECT=dmar
# export MAX_LEN=128
python distillation.py \
--learning_rate=3e-4 \
--do_train \
--fp16 \
--val_check_interval 0.25 \
--teacher Helsinki-NLP/opus-mt-en-ro \
--max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
--student_decoder_layers 3 --student_encoder_layers 6 \
--freeze_encoder --freeze_embeds \
--model_name_or_path IGNORED \
--alpha_hid=3. \
--train_batch_size=$BS --eval_batch_size=$BS \
--tokenizer_name Helsinki-NLP/opus-mt-en-ro \
--warmup_steps 500 --logger_name wandb \
--fp16_opt_level O1 --task translation --normalize_hidden --num_sanity_val_steps=0 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/callbacks.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
def get_checkpoint_callback(output_dir, metric, save_top_k=1, lower_is_better=False):
"""Saves the best model by validation ROUGE2 score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "loss":
exp = "{val_avg_loss:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2, bleu and loss, got {metric}, You can make your own by adding to"
" this function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="min" if "loss" in metric else "max",
save_top_k=save_top_k,
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/convert_pl_checkpoint_to_hf.py | #!/usr/bin/env python
import os
from pathlib import Path
from typing import Dict, List
import fire
import torch
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
from transformers.utils.logging import get_logger
logger = get_logger(__name__)
def remove_prefix(text: str, prefix: str):
if text.startswith(prefix):
return text[len(prefix) :]
return text # or whatever
def sanitize(sd):
return {remove_prefix(k, "model."): v for k, v in sd.items()}
def average_state_dicts(state_dicts: List[Dict[str, torch.Tensor]]):
new_sd = {}
for k in state_dicts[0].keys():
tensors = [sd[k] for sd in state_dicts]
new_t = sum(tensors) / len(tensors)
assert isinstance(new_t, torch.Tensor)
new_sd[k] = new_t
return new_sd
def convert_pl_to_hf(pl_ckpt_path: str, hf_src_model_dir: str, save_path: str) -> None:
"""Cleanup a pytorch-lightning .ckpt file or experiment dir and save a huggingface model with that state dict.
Silently allows extra pl keys (like teacher.) Puts all ckpt models into CPU RAM at once!
Args:
pl_ckpt_path (:obj:`str`): Path to a .ckpt file saved by pytorch_lightning or dir containing ckpt files.
If a directory is passed, all .ckpt files inside it will be averaged!
hf_src_model_dir (:obj:`str`): Path to a directory containing a correctly shaped checkpoint
save_path (:obj:`str`): Directory to save the new model
"""
hf_model = AutoModelForSeq2SeqLM.from_pretrained(hf_src_model_dir)
if os.path.isfile(pl_ckpt_path):
ckpt_files = [pl_ckpt_path]
else:
assert os.path.isdir(pl_ckpt_path)
ckpt_files = list(Path(pl_ckpt_path).glob("*.ckpt"))
assert ckpt_files, f"could not find any ckpt files inside the {pl_ckpt_path} directory"
if len(ckpt_files) > 1:
logger.info(f"averaging the weights of {ckpt_files}")
state_dicts = [sanitize(torch.load(x, map_location="cpu")["state_dict"]) for x in ckpt_files]
state_dict = average_state_dicts(state_dicts)
missing, unexpected = hf_model.load_state_dict(state_dict, strict=False)
assert not missing, f"missing keys: {missing}"
hf_model.save_pretrained(save_path)
try:
tok = AutoTokenizer.from_pretrained(hf_src_model_dir)
tok.save_pretrained(save_path)
except Exception:
pass
# dont copy tokenizer if cant
if __name__ == "__main__":
fire.Fire(convert_pl_to_hf)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/train_mbart_cc25_enro.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
python finetune.py \
--learning_rate=3e-5 \
--fp16 \
--do_train \
--val_check_interval=0.25 \
--adam_eps 1e-06 \
--num_train_epochs 6 --src_lang en_XX --tgt_lang ro_RO \
--data_dir $ENRO_DIR \
--max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
--train_batch_size=$BS --eval_batch_size=$BS \
--task translation \
--warmup_steps 500 \
--freeze_embeds \
--model_name_or_path=facebook/mbart-large-cc25 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/finetune_pegasus_xsum.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
# From appendix C of paper https://arxiv.org/abs/1912.08777
# Set --gradient_accumulation_steps so that effective batch size is 256 (2*128, 4*64, 8*32, 16*16)
python finetune.py \
--learning_rate=1e-4 \
--do_train \
--do_predict \
--n_val 1000 \
--val_check_interval 0.25 \
--max_source_length 512 --max_target_length 56 \
--freeze_embeds --label_smoothing 0.1 --adafactor --task summarization_xsum \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/_test_make_student.py | import tempfile
import unittest
from make_student import create_student_by_copying_alternating_layers
from transformers import AutoConfig
from transformers.file_utils import cached_property
from transformers.testing_utils import require_torch
TINY_BART = "sshleifer/bart-tiny-random"
TINY_T5 = "patrickvonplaten/t5-tiny-random"
@require_torch
class MakeStudentTester(unittest.TestCase):
@cached_property
def teacher_config(self):
return AutoConfig.from_pretrained(TINY_BART)
def test_valid_t5(self):
student, *_ = create_student_by_copying_alternating_layers(TINY_T5, tempfile.mkdtemp(), e=1, d=1)
self.assertEqual(student.config.num_hidden_layers, 1)
def test_asymmetric_t5(self):
student, *_ = create_student_by_copying_alternating_layers(TINY_T5, tempfile.mkdtemp(), e=1, d=None)
def test_same_decoder_small_encoder(self):
student, *_ = create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=1, d=None)
self.assertEqual(student.config.encoder_layers, 1)
self.assertEqual(student.config.decoder_layers, self.teacher_config.encoder_layers)
def test_small_enc_small_dec(self):
student, *_ = create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=1, d=1)
self.assertEqual(student.config.encoder_layers, 1)
self.assertEqual(student.config.decoder_layers, 1)
def test_raises_assert(self):
with self.assertRaises(AssertionError):
create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=None, d=None)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/_test_bash_script.py | #!/usr/bin/env python
import argparse
import os
import sys
from unittest.mock import patch
import pytorch_lightning as pl
import timeout_decorator
import torch
from distillation import SummarizationDistiller, distill_main
from finetune import SummarizationModule, main
from transformers import MarianMTModel
from transformers.file_utils import cached_path
from transformers.testing_utils import TestCasePlus, require_torch_gpu, slow
from utils import load_json
MARIAN_MODEL = "sshleifer/mar_enro_6_3_student"
class TestMbartCc25Enro(TestCasePlus):
def setUp(self):
super().setUp()
data_cached = cached_path(
"https://cdn-datasets.huggingface.co/translation/wmt_en_ro-tr40k-va0.5k-te0.5k.tar.gz",
extract_compressed_file=True,
)
self.data_dir = f"{data_cached}/wmt_en_ro-tr40k-va0.5k-te0.5k"
@slow
@require_torch_gpu
def test_model_download(self):
"""This warms up the cache so that we can time the next test without including download time, which varies between machines."""
MarianMTModel.from_pretrained(MARIAN_MODEL)
# @timeout_decorator.timeout(1200)
@slow
@require_torch_gpu
def test_train_mbart_cc25_enro_script(self):
env_vars_to_replace = {
"$MAX_LEN": 64,
"$BS": 64,
"$GAS": 1,
"$ENRO_DIR": self.data_dir,
"facebook/mbart-large-cc25": MARIAN_MODEL,
# "val_check_interval=0.25": "val_check_interval=1.0",
"--learning_rate=3e-5": "--learning_rate 3e-4",
"--num_train_epochs 6": "--num_train_epochs 1",
}
# Clean up bash script
bash_script = (self.test_file_dir / "train_mbart_cc25_enro.sh").open().read().split("finetune.py")[1].strip()
bash_script = bash_script.replace("\\\n", "").strip().replace('"$@"', "")
for k, v in env_vars_to_replace.items():
bash_script = bash_script.replace(k, str(v))
output_dir = self.get_auto_remove_tmp_dir()
# bash_script = bash_script.replace("--fp16 ", "")
args = f"""
--output_dir {output_dir}
--tokenizer_name Helsinki-NLP/opus-mt-en-ro
--sortish_sampler
--do_predict
--gpus 1
--freeze_encoder
--n_train 40000
--n_val 500
--n_test 500
--fp16_opt_level O1
--num_sanity_val_steps 0
--eval_beams 2
""".split()
# XXX: args.gpus > 1 : handle multi_gpu in the future
testargs = ["finetune.py"] + bash_script.split() + args
with patch.object(sys, "argv", testargs):
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = SummarizationModule.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
model = main(args)
# Check metrics
metrics = load_json(model.metrics_save_path)
first_step_stats = metrics["val"][0]
last_step_stats = metrics["val"][-1]
self.assertEqual(len(metrics["val"]), (args.max_epochs / args.val_check_interval))
assert isinstance(last_step_stats[f"val_avg_{model.val_metric}"], float)
self.assertGreater(last_step_stats["val_avg_gen_time"], 0.01)
# model hanging on generate. Maybe bad config was saved. (XXX: old comment/assert?)
self.assertLessEqual(last_step_stats["val_avg_gen_time"], 1.0)
# test learning requirements:
# 1. BLEU improves over the course of training by more than 2 pts
self.assertGreater(last_step_stats["val_avg_bleu"] - first_step_stats["val_avg_bleu"], 2)
# 2. BLEU finishes above 17
self.assertGreater(last_step_stats["val_avg_bleu"], 17)
# 3. test BLEU and val BLEU within ~1.1 pt.
self.assertLess(abs(metrics["val"][-1]["val_avg_bleu"] - metrics["test"][-1]["test_avg_bleu"]), 1.1)
# check lightning ckpt can be loaded and has a reasonable statedict
contents = os.listdir(output_dir)
ckpt_path = [x for x in contents if x.endswith(".ckpt")][0]
full_path = os.path.join(args.output_dir, ckpt_path)
ckpt = torch.load(full_path, map_location="cpu")
expected_key = "model.model.decoder.layers.0.encoder_attn_layer_norm.weight"
assert expected_key in ckpt["state_dict"]
assert ckpt["state_dict"]["model.model.decoder.layers.0.encoder_attn_layer_norm.weight"].dtype == torch.float32
# TODO: turn on args.do_predict when PL bug fixed.
if args.do_predict:
contents = {os.path.basename(p) for p in contents}
assert "test_generations.txt" in contents
assert "test_results.txt" in contents
# assert len(metrics["val"]) == desired_n_evals
assert len(metrics["test"]) == 1
class TestDistilMarianNoTeacher(TestCasePlus):
@timeout_decorator.timeout(600)
@slow
@require_torch_gpu
def test_opus_mt_distill_script(self):
data_dir = f"{self.test_file_dir_str}/test_data/wmt_en_ro"
env_vars_to_replace = {
"--fp16_opt_level=O1": "",
"$MAX_LEN": 128,
"$BS": 16,
"$GAS": 1,
"$ENRO_DIR": data_dir,
"$m": "sshleifer/student_marian_en_ro_6_1",
"val_check_interval=0.25": "val_check_interval=1.0",
}
# Clean up bash script
bash_script = (
(self.test_file_dir / "distil_marian_no_teacher.sh").open().read().split("distillation.py")[1].strip()
)
bash_script = bash_script.replace("\\\n", "").strip().replace('"$@"', "")
bash_script = bash_script.replace("--fp16 ", " ")
for k, v in env_vars_to_replace.items():
bash_script = bash_script.replace(k, str(v))
output_dir = self.get_auto_remove_tmp_dir()
bash_script = bash_script.replace("--fp16", "")
epochs = 6
testargs = (
["distillation.py"]
+ bash_script.split()
+ [
f"--output_dir={output_dir}",
"--gpus=1",
"--learning_rate=1e-3",
f"--num_train_epochs={epochs}",
"--warmup_steps=10",
"--val_check_interval=1.0",
"--do_predict",
]
)
with patch.object(sys, "argv", testargs):
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = SummarizationDistiller.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
# assert args.gpus == gpus THIS BREAKS for multi_gpu
model = distill_main(args)
# Check metrics
metrics = load_json(model.metrics_save_path)
first_step_stats = metrics["val"][0]
last_step_stats = metrics["val"][-1]
assert len(metrics["val"]) >= (args.max_epochs / args.val_check_interval) # +1 accounts for val_sanity_check
assert last_step_stats["val_avg_gen_time"] >= 0.01
assert first_step_stats["val_avg_bleu"] < last_step_stats["val_avg_bleu"] # model learned nothing
assert 1.0 >= last_step_stats["val_avg_gen_time"] # model hanging on generate. Maybe bad config was saved.
assert isinstance(last_step_stats[f"val_avg_{model.val_metric}"], float)
# check lightning ckpt can be loaded and has a reasonable statedict
contents = os.listdir(output_dir)
ckpt_path = [x for x in contents if x.endswith(".ckpt")][0]
full_path = os.path.join(args.output_dir, ckpt_path)
ckpt = torch.load(full_path, map_location="cpu")
expected_key = "model.model.decoder.layers.0.encoder_attn_layer_norm.weight"
assert expected_key in ckpt["state_dict"]
assert ckpt["state_dict"]["model.model.decoder.layers.0.encoder_attn_layer_norm.weight"].dtype == torch.float32
# TODO: turn on args.do_predict when PL bug fixed.
if args.do_predict:
contents = {os.path.basename(p) for p in contents}
assert "test_generations.txt" in contents
assert "test_results.txt" in contents
# assert len(metrics["val"]) == desired_n_evals
assert len(metrics["test"]) == 1
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/finetune.py | #!/usr/bin/env python
import argparse
import glob
import logging
import os
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
from callbacks import Seq2SeqLoggingCallback, get_checkpoint_callback, get_early_stopping_callback
from torch import nn
from torch.utils.data import DataLoader
from transformers import MBartTokenizer, T5ForConditionalGeneration
from transformers.models.bart.modeling_bart import shift_tokens_right
from utils import (
ROUGE_KEYS,
LegacySeq2SeqDataset,
Seq2SeqDataset,
assert_all_frozen,
calculate_bleu,
calculate_rouge,
check_output_dir,
flatten_list,
freeze_embeds,
freeze_params,
get_git_info,
label_smoothed_nll_loss,
lmap,
pickle_save,
save_git_info,
save_json,
use_task_specific_params,
)
# need the parent dir module
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
from lightning_base import BaseTransformer, add_generic_args, generic_train # noqa
logger = logging.getLogger(__name__)
class SummarizationModule(BaseTransformer):
mode = "summarization"
loss_names = ["loss"]
metric_names = ROUGE_KEYS
default_val_metric = "rouge2"
def __init__(self, hparams, **kwargs):
if hparams.sortish_sampler and hparams.gpus > 1:
hparams.replace_sampler_ddp = False
elif hparams.max_tokens_per_batch is not None:
if hparams.gpus > 1:
raise NotImplementedError("Dynamic Batch size does not work for multi-gpu training")
if hparams.sortish_sampler:
raise ValueError("--sortish_sampler and --max_tokens_per_batch may not be used simultaneously")
super().__init__(hparams, num_labels=None, mode=self.mode, **kwargs)
use_task_specific_params(self.model, "summarization")
save_git_info(self.hparams.output_dir)
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.model_type = self.config.model_type
self.vocab_size = self.config.tgt_vocab_size if self.model_type == "fsmt" else self.config.vocab_size
self.dataset_kwargs: dict = {
"data_dir": self.hparams.data_dir,
"max_source_length": self.hparams.max_source_length,
"prefix": self.model.config.prefix or "",
}
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
if self.hparams.freeze_embeds:
freeze_embeds(self.model)
if self.hparams.freeze_encoder:
freeze_params(self.model.get_encoder())
assert_all_frozen(self.model.get_encoder())
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.decoder_start_token_id = None # default to config
if self.model.config.decoder_start_token_id is None and isinstance(self.tokenizer, MBartTokenizer):
self.decoder_start_token_id = self.tokenizer.lang_code_to_id[hparams.tgt_lang]
self.model.config.decoder_start_token_id = self.decoder_start_token_id
self.dataset_class = (
Seq2SeqDataset if hasattr(self.tokenizer, "prepare_seq2seq_batch") else LegacySeq2SeqDataset
)
self.already_saved_batch = False
self.eval_beams = self.model.config.num_beams if self.hparams.eval_beams is None else self.hparams.eval_beams
if self.hparams.eval_max_gen_length is not None:
self.eval_max_length = self.hparams.eval_max_gen_length
else:
self.eval_max_length = self.model.config.max_length
self.val_metric = self.default_val_metric if self.hparams.val_metric is None else self.hparams.val_metric
def save_readable_batch(self, batch: Dict[str, torch.Tensor]) -> Dict[str, List[str]]:
"""A debugging utility"""
readable_batch = {
k: self.tokenizer.batch_decode(v.tolist()) if "mask" not in k else v.shape for k, v in batch.items()
}
save_json(readable_batch, Path(self.output_dir) / "text_batch.json")
save_json({k: v.tolist() for k, v in batch.items()}, Path(self.output_dir) / "tok_batch.json")
self.already_saved_batch = True
return readable_batch
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
pad_token_id = self.tokenizer.pad_token_id
src_ids, src_mask = batch["input_ids"], batch["attention_mask"]
tgt_ids = batch["labels"]
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(tgt_ids)
else:
decoder_input_ids = shift_tokens_right(tgt_ids, pad_token_id)
if not self.already_saved_batch: # This would be slightly better if it only happened on rank zero
batch["decoder_input_ids"] = decoder_input_ids
self.save_readable_batch(batch)
outputs = self(src_ids, attention_mask=src_mask, decoder_input_ids=decoder_input_ids, use_cache=False)
lm_logits = outputs["logits"]
if self.hparams.label_smoothing == 0:
# Same behavior as modeling_bart.py, besides ignoring pad_token_id
ce_loss_fct = nn.CrossEntropyLoss(ignore_index=pad_token_id)
assert lm_logits.shape[-1] == self.vocab_size
loss = ce_loss_fct(lm_logits.view(-1, lm_logits.shape[-1]), tgt_ids.view(-1))
else:
lprobs = nn.functional.log_softmax(lm_logits, dim=-1)
loss, nll_loss = label_smoothed_nll_loss(
lprobs, tgt_ids, self.hparams.label_smoothing, ignore_index=pad_token_id
)
return (loss,)
@property
def pad(self) -> int:
return self.tokenizer.pad_token_id
def training_step(self, batch, batch_idx) -> Dict:
loss_tensors = self._step(batch)
logs = dict(zip(self.loss_names, loss_tensors))
# tokens per batch
logs["tpb"] = batch["input_ids"].ne(self.pad).sum() + batch["labels"].ne(self.pad).sum()
logs["bs"] = batch["input_ids"].shape[0]
logs["src_pad_tok"] = batch["input_ids"].eq(self.pad).sum()
logs["src_pad_frac"] = batch["input_ids"].eq(self.pad).float().mean()
# TODO(SS): make a wandb summary metric for this
return {"loss": loss_tensors[0], "log": logs}
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
generative_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metric_val = (
generative_metrics[self.val_metric] if self.val_metric in generative_metrics else losses[self.val_metric]
)
metric_tensor: torch.FloatTensor = torch.tensor(metric_val).type_as(loss)
generative_metrics.update({k: v.item() for k, v in losses.items()})
losses.update(generative_metrics)
all_metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
all_metrics["step_count"] = self.step_count
self.metrics[prefix].append(all_metrics) # callback writes this to self.metrics_save_path
preds = flatten_list([x["preds"] for x in outputs])
return {
"log": all_metrics,
"preds": preds,
f"{prefix}_loss": loss,
f"{prefix}_{self.val_metric}": metric_tensor,
}
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_rouge(preds, target)
def _generative_step(self, batch: dict) -> dict:
t0 = time.time()
# parser.add_argument('--eval_max_gen_length', type=int, default=None, help='never generate more than n tokens')
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
use_cache=True,
decoder_start_token_id=self.decoder_start_token_id,
num_beams=self.eval_beams,
max_length=self.eval_max_length,
)
gen_time = (time.time() - t0) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["labels"])
loss_tensors = self._step(batch)
base_metrics = dict(zip(self.loss_names, loss_tensors))
rouge: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **rouge)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = self.dataset_class(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
if self.hparams.sortish_sampler and type_path != "test" and type_path != "val":
sampler = dataset.make_sortish_sampler(batch_size, distributed=self.hparams.gpus > 1)
return DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=False,
num_workers=self.num_workers,
sampler=sampler,
)
elif self.hparams.max_tokens_per_batch is not None and type_path != "test" and type_path != "val":
batch_sampler = dataset.make_dynamic_sampler(
self.hparams.max_tokens_per_batch, distributed=self.hparams.gpus > 1
)
return DataLoader(
dataset,
batch_sampler=batch_sampler,
collate_fn=dataset.collate_fn,
# shuffle=False,
num_workers=self.num_workers,
# batch_size=None,
)
else:
return DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
sampler=None,
)
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=1024,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--max_target_length",
default=56,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--val_max_target_length",
default=142, # these defaults are optimized for CNNDM. For xsum, see README.md.
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--test_max_target_length",
default=142,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--freeze_encoder", action="store_true")
parser.add_argument("--freeze_embeds", action="store_true")
parser.add_argument("--sortish_sampler", action="store_true", default=False)
parser.add_argument("--overwrite_output_dir", action="store_true", default=False)
parser.add_argument("--max_tokens_per_batch", type=int, default=None)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=500, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument(
"--task", type=str, default="summarization", required=False, help="# examples. -1 means use all."
)
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument("--src_lang", type=str, default="", required=False)
parser.add_argument("--tgt_lang", type=str, default="", required=False)
parser.add_argument("--eval_beams", type=int, default=None, required=False)
parser.add_argument(
"--val_metric", type=str, default=None, required=False, choices=["bleu", "rouge2", "loss", None]
)
parser.add_argument("--eval_max_gen_length", type=int, default=None, help="never generate more than n tokens")
parser.add_argument("--save_top_k", type=int, default=1, required=False, help="How many checkpoints to save")
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help=(
"-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So"
" val_check_interval will effect it."
),
)
return parser
class TranslationModule(SummarizationModule):
mode = "translation"
loss_names = ["loss"]
metric_names = ["bleu"]
default_val_metric = "bleu"
def __init__(self, hparams, **kwargs):
super().__init__(hparams, **kwargs)
self.dataset_kwargs["src_lang"] = hparams.src_lang
self.dataset_kwargs["tgt_lang"] = hparams.tgt_lang
def calc_generative_metrics(self, preds, target) -> dict:
return calculate_bleu(preds, target)
def main(args, model=None) -> SummarizationModule:
Path(args.output_dir).mkdir(exist_ok=True)
check_output_dir(args, expected_items=3)
if model is None:
if "summarization" in args.task:
model: SummarizationModule = SummarizationModule(args)
else:
model: SummarizationModule = TranslationModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
if args.early_stopping_patience >= 0:
es_callback = get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
else:
es_callback = False
lower_is_better = args.val_metric == "loss"
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(
args.output_dir, model.val_metric, args.save_top_k, lower_is_better
),
early_stopping_callback=es_callback,
logger=logger,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
model.hparams.test_checkpoint = ""
checkpoints = sorted(glob.glob(os.path.join(args.output_dir, "*.ckpt"), recursive=True))
if checkpoints:
model.hparams.test_checkpoint = checkpoints[-1]
trainer.resume_from_checkpoint = checkpoints[-1]
trainer.logger.log_hyperparams(model.hparams)
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = SummarizationModule.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/distillation.py | #!/usr/bin/env python
import argparse
import gc
import os
import sys
from pathlib import Path
from typing import List # noqa: F401
import pytorch_lightning as pl
import torch
from finetune import SummarizationModule, TranslationModule
from finetune import main as ft_main
from make_student import create_student_by_copying_alternating_layers, get_layers_to_supervise
from torch import nn
from transformers import AutoModelForSeq2SeqLM, MBartTokenizer, T5ForConditionalGeneration
from transformers.models.bart.modeling_bart import shift_tokens_right
from utils import calculate_bleu, check_output_dir, freeze_params, label_smoothed_nll_loss, use_task_specific_params
# need the parent dir module
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
from lightning_base import generic_train # noqa
class SummarizationDistiller(SummarizationModule):
"""Supports T5, Bart, Pegasus and other models that inherit from Bart."""
loss_names = ["loss", "ce_loss", "mlm_loss", "hid_loss_enc", "hid_loss_dec"]
def __init__(self, hparams):
assert Path(hparams.data_dir).exists()
self.output_dir = Path(hparams.output_dir)
self.output_dir.mkdir(exist_ok=True)
save_dir = self.output_dir.joinpath("student")
hparams.model_name_or_path = str(save_dir) # Tell lightning we are training the student
teacher = AutoModelForSeq2SeqLM.from_pretrained(hparams.teacher).eval()
use_task_specific_params(teacher, hparams.task) # We copy good generation parameters to student by default
if hparams.student is not None:
student = AutoModelForSeq2SeqLM.from_pretrained(hparams.student)
use_task_specific_params(student, hparams.task)
e_layer_ids, d_layer_ids = None, None
else:
student, e_layer_ids, d_layer_ids = create_student_by_copying_alternating_layers(
teacher, e=hparams.student_encoder_layers, d=hparams.student_decoder_layers, save_path=save_dir
)
if hparams.length_penalty != -1:
student.config.length_penalty = hparams.length_penalty
hparams.tokenizer_name = hparams.teacher # Use teacher's tokenizer
super().__init__(hparams, model=student, config=student.config)
assert student.config.model_type == teacher.config.model_type, (
f"teacher, student model types should be the same, got {student.config.model_type} !="
f" {teacher.config.model_type}"
)
if student.config.model_type == "t5":
student_encoder_layers = len(student.get_encoder().block)
student_decoder_layers = len(student.get_decoder().block)
teacher_encoder_layers = len(teacher.get_encoder().block)
teacher_decoder_layers = len(teacher.get_decoder().block)
else:
student_encoder_layers = student.config.encoder_layers
student_decoder_layers = student.config.decoder_layers
teacher_encoder_layers = teacher.config.encoder_layers
teacher_decoder_layers = teacher.config.decoder_layers
self.different_base_models = not (hparams.student is None or hparams.teacher == hparams.student)
self.do_calc_hidden_loss = (not self.different_base_models) and hparams.alpha_hid > 0
self.different_encoder = self.different_base_models or (student_encoder_layers != teacher_encoder_layers)
# self.different_encoder determines whether we need to run the teacher encoder
self.teacher = teacher
freeze_params(self.teacher)
if not self.different_encoder: # To save RAM, delete teacher encoder and freeze student encoder.
try:
del self.teacher.model.encoder
except AttributeError: # T5
del self.teacher.encoder
if e_layer_ids is None:
e_layer_ids = list(range(student_encoder_layers))
if d_layer_ids is None:
d_layer_ids = list(range(student_decoder_layers))
self.e_layer_ids, self.d_layer_ids = e_layer_ids, d_layer_ids # type: List[int], List[int]
if self.do_calc_hidden_loss: # Intermediate supervision: Decide which layers to supervise
if hparams.supervise_forward:
self.e_matches = get_layers_to_supervise(
n_student=len(self.e_layer_ids), n_teacher=teacher_encoder_layers
)
self.d_matches = get_layers_to_supervise(
n_student=len(self.d_layer_ids), n_teacher=teacher_decoder_layers
)
else: # student layer should emulate hidden states of the teacher layer it was copied from
self.e_matches = self.e_layer_ids
self.d_matches = self.d_layer_ids
else:
self.e_matches = None
self.d_matches = None
self.ce_loss_fct = nn.KLDivLoss(reduction="batchmean")
self.temperature = 2.0
self.alpha_mlm = hparams.alpha_mlm
self.alpha_ce = hparams.alpha_ce
self.alpha_hid = hparams.alpha_hid
gc.collect()
torch.cuda.empty_cache()
def calc_ce_loss(self, mask, s_logits, t_logits):
"""Copy pasted from distillbert (transformers/examples/distillation/)"""
# mask has False at padding_idx
sel_mask = mask[:, :, None].expand_as(s_logits)
vocab_size = s_logits.size(-1)
s_logits_slct = torch.masked_select(s_logits, sel_mask) # (bs * seq_length * voc_size) modulo the 1s in mask
t_logits_slct = torch.masked_select(t_logits, sel_mask) # (bs * seq_length * voc_size) modulo the 1s in mask
s_logits_slct = s_logits_slct.view(-1, vocab_size) # (bs * seq_length, voc_size) modulo the 1s in mask
t_logits_slct = t_logits_slct.view(-1, vocab_size) # (bs * seq_length, voc_size) modulo the 1s in mask
assert t_logits_slct.size() == s_logits_slct.size()
loss_ce = (
self.ce_loss_fct(
nn.functional.log_softmax(s_logits_slct / self.temperature, dim=-1),
nn.functional.softmax(t_logits_slct / self.temperature, dim=-1),
)
* (self.temperature) ** 2
)
return loss_ce
@staticmethod
def add_model_specific_args(parser, root_dir):
SummarizationModule.add_model_specific_args(parser, root_dir)
add_distill_args(parser)
return parser
def _step(self, batch: dict) -> tuple:
"""Compute the loss for a batch"""
pad_token_id = self.tokenizer.pad_token_id
input_ids, src_mask, labels = batch["input_ids"], batch["attention_mask"], batch["labels"]
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(labels)
else:
decoder_input_ids = shift_tokens_right(labels, pad_token_id)
# noinspection PyCallingNonCallable
student_outputs = self(
input_ids,
attention_mask=src_mask,
decoder_input_ids=decoder_input_ids,
output_hidden_states=self.do_calc_hidden_loss,
output_attentions=False,
use_cache=False,
)
lm_logits = student_outputs["logits"]
# Same cross entropy vs. label smoothing logic as finetune.py
assert lm_logits.shape[-1] == self.model.config.vocab_size
if self.hparams.label_smoothing == 0:
# Same behavior as modeling_bart.py, besides ignoring pad_token_id
loss_fct = nn.CrossEntropyLoss(ignore_index=pad_token_id)
student_lm_loss = loss_fct(lm_logits.view(-1, lm_logits.shape[-1]), labels.view(-1))
else:
lprobs = nn.functional.log_softmax(lm_logits, dim=-1)
student_lm_loss, _ = label_smoothed_nll_loss(
lprobs, labels, self.hparams.label_smoothing, ignore_index=pad_token_id
)
def zero_tensor():
return torch.tensor(0.0).type_as(student_lm_loss)
teacher_enc_outputs = student_outputs[
"encoder_last_hidden_state"
] # use this unless self.different_base_models
hid_loss_enc, hid_loss_dec = zero_tensor(), zero_tensor()
if self.different_encoder: # compute encoder hidden state loss
all_teacher_encoder_outputs = self.teacher.get_encoder()(
input_ids,
attention_mask=src_mask,
output_hidden_states=self.do_calc_hidden_loss,
)
if self.different_base_models:
teacher_enc_outputs = all_teacher_encoder_outputs["last_hidden_state"]
elif self.do_calc_hidden_loss:
hid_loss_enc = self.calc_hidden_loss(
src_mask,
student_outputs["encoder_hidden_states"],
all_teacher_encoder_outputs["hidden_states"],
self.e_matches,
normalize_hidden=self.hparams.normalize_hidden,
)
teacher_outputs = self.teacher(
input_ids,
attention_mask=src_mask,
encoder_outputs=(teacher_enc_outputs,),
decoder_input_ids=decoder_input_ids,
output_hidden_states=self.do_calc_hidden_loss,
use_cache=False, # since we are not passing labels, never let this default to True
)
dec_mask = decoder_input_ids.ne(pad_token_id)
loss_ce = self.calc_ce_loss(dec_mask, lm_logits, teacher_outputs["logits"])
if self.do_calc_hidden_loss: # Intermediate supervision of decoder hidden states
hid_loss_dec = self.calc_hidden_loss(
dec_mask,
student_outputs["decoder_hidden_states"],
teacher_outputs["decoder_hidden_states"],
self.d_matches,
normalize_hidden=self.hparams.normalize_hidden,
)
blended_loss = (
self.alpha_ce * loss_ce
+ self.alpha_mlm * student_lm_loss
+ self.hparams.alpha_hid * (hid_loss_enc + hid_loss_dec)
)
return blended_loss, loss_ce, student_lm_loss, hid_loss_enc, hid_loss_dec
@staticmethod
def calc_hidden_loss(attention_mask, hidden_states, hidden_states_T, matches, normalize_hidden):
"""MSE(student_hid, teacher_hid[matches]). Called "Intermediate supervision" in paper. Inspired by TinyBERT."""
msg = "expected list or tuple for hidden_states, got tensor of shape: "
assert not isinstance(hidden_states, torch.Tensor), f"{msg}{hidden_states.shape}"
assert not isinstance(hidden_states_T, torch.Tensor), f"{msg}{hidden_states_T.shape}"
mask = attention_mask.to(hidden_states[0])
valid_count = mask.sum() * hidden_states[0].size(-1)
student_states = torch.stack([hidden_states[i] for i in range(len(matches))])
teacher_states = torch.stack([hidden_states_T[j] for j in matches])
assert student_states.shape == teacher_states.shape, f"{student_states.shape} != {teacher_states.shape}"
if normalize_hidden:
student_states = nn.functional.layer_norm(student_states, student_states.shape[1:])
teacher_states = nn.functional.layer_norm(teacher_states, teacher_states.shape[1:])
mse = nn.functional.mse_loss(student_states, teacher_states, reduction="none")
masked_mse = (mse * mask.unsqueeze(0).unsqueeze(-1)).sum() / valid_count
return masked_mse
def add_distill_args(parser):
# NOTE: if --student argument was specified and the teacher and student base models
# are different, the models still have to have the same tokenizer, specified by
# --tokenizer_name. So, for example, you can distill from t5_large to t5_small but not
# from bart to t5. This s because if the tokenizers are different, the output space
# for the two models is also different and their logits are not comparable.
parser.add_argument("--teacher", type=str)
parser.add_argument("--alpha_ce", default=0.8, type=float)
parser.add_argument("--alpha_mlm", default=0.2, type=float)
parser.add_argument("--alpha_hid", default=0.0, type=float, required=False)
parser.add_argument("--student", type=str, required=False)
parser.add_argument("--student_decoder_layers", default=12, type=int, required=False)
parser.add_argument("--student_encoder_layers", default=12, type=int, required=False)
parser.add_argument("--no_teacher", action="store_true", default=False)
parser.add_argument("--length_penalty", type=float, default=-1)
parser.add_argument("--supervise_forward", action="store_true", default=False)
parser.add_argument("--normalize_hidden", action="store_true", default=False)
class TranslationDistiller(SummarizationDistiller):
"""Supports T5, mBART, Marian, other models that inherit from Bart."""
mode = "translation"
metric_names = ["bleu"]
default_val_metric = "bleu"
def __init__(self, hparams, **kwargs):
super().__init__(hparams, **kwargs)
assert hparams.src_lang is not None
assert hparams.tgt_lang is not None
self.dataset_kwargs["src_lang"] = hparams.src_lang
self.dataset_kwargs["tgt_lang"] = hparams.tgt_lang
if self.model.config.decoder_start_token_id is None and isinstance(self.tokenizer, MBartTokenizer):
self.decoder_start_token_id = self.tokenizer.lang_code_to_id[hparams.tgt_lang]
def calc_generative_metrics(self, preds, target) -> dict:
return calculate_bleu(preds, target)
@staticmethod
def add_model_specific_args(parser, root_dir):
TranslationModule.add_model_specific_args(parser, root_dir)
add_distill_args(parser)
return parser
def create_module(args):
if args.no_teacher:
module_cls = TranslationModule if "translation" in args.task else SummarizationModule
else: # DISTILL WITH TEACHER
module_cls = TranslationDistiller if "translation" in args.task else SummarizationDistiller
args.setup_cls: str = module_cls.__name__
print(f"using module {args.setup_cls}")
model = module_cls(args)
return model
def distill_main(args):
Path(args.output_dir).mkdir(exist_ok=True)
check_output_dir(args, expected_items=3)
model = create_module(args)
return ft_main(args, model=model)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = SummarizationDistiller.add_model_specific_args(parser, os.getcwd())
args = parser.parse_args()
distill_main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/seq2seq-distillation/train_distilbart_cnn.sh | #!/usr/bin/env bash
export PYTHONPATH="../":"${PYTHONPATH}"
export BS=32
export GAS=1
python finetune.py \
--learning_rate=3e-5 \
--fp16 \
--gpus 1 \
--do_train \
--do_predict \
--val_check_interval 0.25 \
--n_val 500 \
--num_train_epochs 2 \
--freeze_encoder --freeze_embeds --data_dir cnn_dm \
--max_target_length 142 --val_max_target_length=142 \
--train_batch_size=$BS --eval_batch_size=$BS --gradient_accumulation_steps=$GAS \
--model_name_or_path sshleifer/student_cnn_12_6 \
--tokenizer_name facebook/bart-large \
--warmup_steps 500 \
--output_dir distilbart-cnn-12-6 \
"$@"
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_streaming.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition in streaming mode"""
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import datasets
import numpy as np
import torch
from datasets import IterableDatasetDict, interleave_datasets, load_dataset, load_metric
from torch.utils.data import IterableDataset
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainerCallback,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import IterableDatasetShard
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risk.
check_min_version("4.17.0.dev0")
require_version("datasets>=1.18.2", "To fix: pip install 'datasets>=1.18.2'")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": (
"Probability of each feature vector along the time axis to be chosen as the start of the vector "
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature "
"vectors will be masked along the time axis."
)
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": (
"Probability of each feature vector along the feature axis to be chosen as the start of the vectorspan"
" to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature"
" bins will be masked along the time axis."
)
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": (
"The name of the training data set split to use (via the datasets library). Defaults to "
"'train+validation'"
)
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'test'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
)
},
)
shuffle_buffer_size: Optional[int] = field(
default=500,
metadata={
"help": (
"The number of streamed examples to download before shuffling them. The large the buffer, "
"the closer it is to real offline shuffling."
)
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds."},
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": (
"Whether to only do data preprocessing and skip training. This is especially useful when data"
" preprocessing errors out in distributed training due to timeout. In this case, one should run the"
" preprocessing in a non-distributed setup with `preprocessing_only=True` so that the cached datasets"
" can consequently be loaded in distributed training"
)
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"If :obj:`True`, will use the token generated when running"
":obj:`huggingface-cli login` as HTTP bearer authorization for remote files."
)
},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": (
"The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
)
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
max_length: Optional[int] = None
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lengths and need
# different padding methods
input_features = []
label_features = []
for feature in features:
if self.max_length and feature["input_values"].shape[-1] > self.max_length:
continue
input_features.append({"input_values": feature["input_values"]})
label_features.append({"input_ids": feature["labels"]})
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
labels_batch = self.processor.pad(
labels=label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}, "
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = IterableDatasetDict()
raw_column_names = {}
def load_streaming_dataset(split, sampling_rate, **kwargs):
if "+" in split:
dataset_splits = [load_dataset(split=split_name, **kwargs) for split_name in split.split("+")]
# `features` and `cast_column` won't be available after interleaving, so we'll use them here
features = dataset_splits[0].features
# make sure that the dataset decodes audio with a correct sampling rate
dataset_splits = [
dataset.cast_column(data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate))
for dataset in dataset_splits
]
interleaved_dataset = interleave_datasets(dataset_splits)
return interleaved_dataset, features
else:
dataset = load_dataset(split=split, **kwargs)
features = dataset.features
# make sure that the dataset decodes audio with a correct sampling rate
dataset = dataset.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=sampling_rate)
)
return dataset, features
# `datasets` takes care of automatically loading and resampling the audio,
# so we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
if training_args.do_train:
raw_datasets["train"], train_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.train_split_name,
token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["train"] = list(train_features.keys())
if data_args.audio_column_name not in raw_column_names["train"]:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'."
" Make sure to set `--audio_column_name` to the correct audio column - one of"
f" {', '.join(raw_column_names['train'])}."
)
if data_args.text_column_name not in raw_column_names["train"]:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_column_names['train'])}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].take(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"], eval_features = load_streaming_dataset(
path=data_args.dataset_name,
name=data_args.dataset_config_name,
split=data_args.eval_split_name,
token=data_args.use_auth_token,
streaming=True,
sampling_rate=feature_extractor.sampling_rate,
)
raw_column_names["eval"] = list(eval_features.keys())
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].take(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
for split, dataset in raw_datasets.items():
raw_datasets[split] = dataset.map(
remove_special_characters,
).remove_columns([text_column_name])
# 3. Next, let's load the config as we might need it to create
# the tokenizer
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# 4. Now we can instantiate the tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
tokenizer_name_or_path = model_args.tokenizer_name_or_path
if tokenizer_name_or_path is None:
raise ValueError(
"Tokenizer has to be created before training in streaming mode. Please specify --tokenizer_name_or_path"
)
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
config=config,
token=data_args.use_auth_token,
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 5. Now we preprocess the datasets including loading the audio, resampling and normalization
audio_column_name = data_args.audio_column_name
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
vectorized_datasets = IterableDatasetDict()
with training_args.main_process_first(desc="dataset map preprocessing"):
for split, dataset in raw_datasets.items():
vectorized_datasets[split] = (
dataset.map(prepare_dataset)
.remove_columns(raw_column_names[split] + ["target_text"])
.with_format("torch")
)
if split == "train":
vectorized_datasets[split] = vectorized_datasets[split].shuffle(
buffer_size=data_args.shuffle_buffer_size,
seed=training_args.seed,
)
# 6. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
data_collator = DataCollatorCTCWithPadding(processor=processor, max_length=max_input_length)
# trainer callback to reinitialize and reshuffle the streamable datasets at the beginning of each epoch
class ShuffleCallback(TrainerCallback):
def on_epoch_begin(self, args, state, control, train_dataloader, **kwargs):
if isinstance(train_dataloader.dataset, IterableDatasetShard):
pass # set_epoch() is handled by the Trainer
elif isinstance(train_dataloader.dataset, IterableDataset):
train_dataloader.dataset.set_epoch(train_dataloader.dataset._epoch + 1)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=processor,
callbacks=[ShuffleCallback()],
)
# 7. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
if data_args.max_train_samples:
metrics["train_samples"] = data_args.max_train_samples
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
if data_args.max_eval_samples:
metrics["eval_samples"] = data_args.max_eval_samples
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "automatic-speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": (
f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split:"
f" {data_args.eval_split_name}"
),
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/robust-speech-event/README.md | # Robust Speech Challenge 🤗
Welcome to the robust speech recognition challenge 🎙️ !
The goal of this event is to build **robust**, **real-world** speech recognition (ASR) systems in as many languages as possible 🌏🌍🌎.
If necessary and available, free access to a V100S 32 GB GPU will kindly be provided by the [OVHcloud team]( https://www.ovhcloud.com/) 🚀.
This document summarizes all the relevant information required for the speech community event 📋.
To sign-up, please see [this forum post](https://discuss.huggingface.co/t/open-to-the-community-robust-speech-recognition-challenge/13614) 🤗. Please make sure to:
- Read it in detail
- Fill the google form
- Join our Discord server in the #join-sprint channel.
## Table of Contents
- [TLDR;](#tldr)
- [Important dates](#important-dates)
- [How to install pytorch, transformers, datasets](#how-to-install-relevant-libraries)
- [Data and Preprocessing](#data-and-preprocessing)
- [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model)
- [How to fine-tune with OVH could](#how-to-finetune-with-ovh-cloud)
- [How to combine n-gram language models with acoustic model](#how-to-combine-n-gram-with-acoustic-model)
- [Evaluation](#evaluation)
- [Prizes](#prizes)
- [Communication and Problems](#communication-and-problems)
- [Talks](#talks)
- [General Tips & Tricks](#general-tips-and-tricks)
## TLDR
Participants are encouraged to leverage pre-trained speech recognition checkpoints,
preferably [facebook/wav2vec2-large-xlsr-53](https://huggingface.co/facebook/wav2vec2-large-xlsr-53),
to train a speech recognition system in a language of their choice.
Speech recognition systems should be trained using **PyTorch**, **🤗 Transformers**, and, **🤗 Datasets**.
For more information on how to install the above libraries, please read through
[How to install pytorch, transformers, datasets](#how-to-install-relevant-libraries).
Participants can make use of whatever data they think is useful to build a
speech recognition system for **real-world** audio data -
**except** the Common Voice `"test"` split of their chosen language.
The section [Data and preprocessing](#data-and-preprocessing) explains
in more detail what audio data can be used, how to find suitable audio data, and
how the audio data can be processed.
For training, it is recommended to use the [official training script](https://github.com/huggingface/transformers/blob/main/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py) or a modification thereof. A step-by-step guide on how to fine-tune
an acoustic model for a speech recognition system can be found under [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model).
If possible it is encouraged to fine-tune the acoustic models on local GPU machines, but
if those are not available, the OVH could team kindly provides a limited
number of GPUs for the event. Simply fill out [this google form](https://forms.gle/GFZkMkKLiufi75g28) to get access to a GPU.
For more information on how to train an acoustic model on one of OVH's GPU - see [How to fine-tune a speech recognition model with OVHcould](#how-to-fine-tune-with-ovh-cloud).
The performance of speech recognition system can often significantly be improved by adding a
language model for decoding. For more information on how to add a language model, please
take a look at [How to combine n-gram language models with speech recognition models](#how-to-combine-n-gram-with-model).
During the event, the speech recognition system will be evaluated on both the Common Voice `"test"` split
of the participants' chosen language as well as the *real-world* `"dev"` data provided by
the Hugging Face team.
At the end of the robust speech recognition challenge, the speech recognition system will also be evaluated on the
*real-world* `"test"` data provided by the Hugging Face team. Each participant should add an
`eval.py` script to her/his model repository in a specific format that lets one easily
evaluate the speech recognition system on both Common Voice's `"test"` data as well as the *real-world* audio
data. Please read through the [Evaluation](#evaluation) section to make sure your evaluation script is in the correct format. Speech recognition systems
with evaluation scripts in an incorrect format can sadly not be considered for the Challenge.
At the end of the event, the best performing speech recognition system
will receive a prize 🏆 - more information regarding the prizes can be found under [Prizes](#prizes).
We believe that framing the event as a competition is more fun, but at the core, the event is about
creating speech recognition systems in as many languages as possible as a community.
This can be achieved by working together, helping each other to solve bugs, share important findings, etc...🤗
**Note**:
Please, read through the section on [Communication & Problems](#communication-and-problems) to make sure you
know how to ask for help, etc...
All important announcements will be made on discord. Please make sure that
you've joined [this discord channel](https://discord.gg/SHr5wC7m)
Also, please make sure that you have been added to the [Speech Event Organization](https://huggingface.co/speech-recognition-community-v2).
You should have received an invite by email. If you didn't receive an invite, please contact the organizers, *e.g.* Anton, Patrick, or Omar directly on discord.
## Important dates
## Data and preprocessing
In this section, we will quickly go over how to find suitable training data and
how to preprocess it.
To begin with, **all data except Common Voice's `"test"` data can be used as training data.**
The exception includes all Common Voice versions as the test data split of later Common Voice versions often
overlaps with the one of previous versions, *e.g.* the test data of Common Voice 7 in English is
to a big part identical to the test data of Common Voice 6 in English:
```python
load_dataset("mozilla-foundation/common_voice_7_0", "en", split="test")
```
includes more or less the same data as
```python
load_dataset("mozilla-foundation/common_voice_6_1", "en", split="test")
```
However, we strongly encourage participants to make use of Common Voice's other splits, *e.g.* `"train"` and `"validation"`.
For most languages, the Common Voice dataset offers already a decent amount of training data. It is usually
always advantageous to collect additional data. To do so, the participants are in a first step encouraged to search the
Hugging Face Hub for additional audio data, for example by selecting the category
["speech-processing"](https://huggingface.co/datasets?task_categories=task_categories:speech-processing&sort=downloads).
All datasets that are available on the Hub can be downloaded via the 🤗 Datasets library in the same way Common Voice is downloaded.
If one wants to combine multiple datasets for training, it might make sense to take a look at
the [`interleave_datasets`](https://huggingface.co/docs/datasets/package_reference/main_classes?highlight=interleave#datasets.interleave_datasets) function.
In addition, participants can also make use of their audio data. Here, please make sure that you **are allowed to use the audio data**. E.g., if audio data
is taken from media platforms, such as YouTube, it should be verified that the media platform and the owner of the data have given her/his approval to use the audio
data in the context of machine learning research. If you are not sure whether the data you want to use has the appropriate licensing, please contact the Hugging Face
team on discord.
Next, let's talk about preprocessing. Audio data and transcriptions have to be brought into the correct format when
training the acoustic model (example shown in [How to fine-tune an acoustic model](#how-to-finetune-an-acoustic-model)).
It is recommended that this is done by using 🤗 Datasets `.map()` function as shown
[here](https://github.com/huggingface/transformers/blob/9a2dabae7002258e41419491c73dd43ad61b5de7/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py#L444). As can be
see we can pass some characters that will be removed from the transcriptions, *e.g.*: `--chars_to_ignore , ? . ! - \; \: \" “ % ‘ ” � \`
on the official ["Single GPU Example"](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition#single-gpu-ctc).
The participants are free to modify this preprocessing by removing more characters or even replacing characters as
it is done in the [official blog post](https://github.com/huggingface/transformers/blob/9a2dabae7002258e41419491c73dd43ad61b5de7/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py#L444).
**However**, there are some rules regarding what characters are allowed to be removed/replaced and which are not.
These rules are not this straightforward and therefore often have to be evaluated case-by-case.
It is allowed (and recommended) to normalize the data to only have lower-case characters. It is also allowed (and recommended) to remove typographical
symbols and punctuation marks. A list of such symbols can *e.g.* be found [here](https://en.wikipedia.org/wiki/List_of_typographical_symbols_and_punctuation_marks) - however here we already must be careful. We should **not** remove a symbol that would change the meaning of the words, *e.g.* in English,
we should not remove the single quotation mark `'` since it would change the meaning of the word `"it's"` to `"its"` which would then be incorrect.
So the golden rule here is to not remove any characters that could change the meaning of a word into another word. This is not always obvious and should
be given some consideration. As another example, it is fine to remove the "Hyphen-minus" sign "`-`" since it doesn't change the
meaning of a word to another one. *E.g.* "`fine-tuning`" would be changed to "`finetuning`" which has still the same meaning.
Since those choices are not always obvious when in doubt feel free to ask on Discord or even better post your question on the forum, as was
done, *e.g.* [here](https://discuss.huggingface.co/t/spanish-asr-fine-tuning-wav2vec2/4586).
## How to install relevant libraries
The following libraries are required to fine-tune a speech model with 🤗 Transformers and 🤗 Datasets in PyTorch.
- [PyTorch](https://pytorch.org/)
- [Transformers](https://github.com/huggingface/transformers)
- [Datasets](https://github.com/huggingface/datasets)
We recommend installing the above libraries in a [virtual environment](https://docs.python.org/3/library/venv.html).
If you're unfamiliar with Python virtual environments, check out the [user guide](https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/). Create a virtual environment with the version of Python you're going
to use and activate it.
You should be able to run the command:
```bash
python3 -m venv <your-venv-name>
```
You can activate your venv by running
```bash
source ~/<your-venv-name>/bin/activate
```
To begin with please make sure you have PyTorch and CUDA correctly installed.
The following command should return ``True``:
```bash
python -c "import torch; print(torch.cuda.is_available())"
```
If the above command doesn't print ``True``, in the first step, please follow the
instructions [here](https://pytorch.org/) to install PyTorch with CUDA.
We strongly recommend making use of the provided PyTorch examples scripts in [transformers/examples/pytorch/speech-recognition](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition) to train your speech recognition
system.
In all likelihood, you will adjust one of the example scripts, so we recommend forking and cloning the 🤗 Transformers repository as follows.
1. Fork the [repository](https://github.com/huggingface/transformers) by
clicking on the 'Fork' button on the repository's page. This creates a copy of the code
under your GitHub user account.
2. Clone your fork to your local disk, and add the base repository as a remote:
```bash
$ git clone https://github.com/<your Github handle>/transformers.git
$ cd transformers
$ git remote add upstream https://github.com/huggingface/transformers.git
```
3. Create a new branch to hold your development changes. This is especially useful to share code changes with your team:
```bash
$ git checkout -b a-descriptive-name-for-my-project
```
4. Set up a PyTorch environment by running the following command your virtual environment:
```bash
$ pip install -e ".[torch-speech]"
```
(If transformers was already installed in the virtual environment, remove
it with `pip uninstall transformers` before reinstalling it in editable
mode with the `-e` flag.)
If you have already cloned that repo, you might need to `git pull` to get the most recent changes in the `transformers`
library.
Running this command will automatically install `torch` and the most relevant
libraries required for fine-tuning a speech recognition system.
Next, you should also install the 🤗 Datasets library. We strongly recommend installing the
library from source to profit from the most current additions during the community week.
Simply run the following steps:
```
$ cd ~/
$ git clone https://github.com/huggingface/datasets.git
$ cd datasets
$ pip install -e ".[streaming]"
```
If you plan on contributing a specific dataset during
the community week, please fork the datasets repository and follow the instructions
[here](https://github.com/huggingface/datasets/blob/master/CONTRIBUTING.md#how-to-create-a-pull-request).
To verify that all libraries are correctly installed, you can run the following command in a Python shell.
It verifies that both `transformers` and `datasets` have been correclty installed.
```python
from transformers import AutoModelForCTC, AutoProcessor
from datasets import load_dataset
dummy_dataset = load_dataset("common_voice", "ab", split="test")
model = AutoModelForCTC.from_pretrained("hf-internal-testing/tiny-random-wav2vec2")
model.to("cuda")
processor = AutoProcessor.from_pretrained("hf-internal-testing/tiny-random-wav2vec2")
input_values = processor(dummy_dataset[0]["audio"]["array"], return_tensors="pt", sampling_rate=16_000).input_values
input_values = input_values.to("cuda")
logits = model(input_values).logits
assert logits.shape[-1] == 32
```
## How to finetune an acoustic model
In this section, we show you how to fine-tune a pre-trained [XLS-R Model](https://huggingface.co/docs/transformers/model_doc/xls_r) on the [Common Voice 7 dataset](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0).
We recommend fine-tuning one of the following pre-trained XLS-R checkpoints:
- [300M parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-300m)
- [1B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-1b)
- [2B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-2b)
To begin with, please note that to use the Common Voice dataset, you
have to accept that **your email address** and **username** are shared with the
mozilla-foundation. To get access to the dataset please click on "*Access repository*" [here](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0).
Next, we recommended that you get familiar with the XLS-R model and its capabilities.
In collaboration with [Fairseq's Wav2Vec2 team](https://github.com/pytorch/fairseq/tree/main/examples/wav2vec),
we've written ["Fine-tuning XLS-R for Multi-Lingual ASR with 🤗 Transformers"](https://huggingface.co/blog/fine-tune-xlsr-wav2vec2) which gives an in-detail explanation of how XLS-R functions and how it can be fine-tuned.
The blog can also be opened and directly fine-tuned in a google colab notebook.
In this section, we will explain how to fine-tune the model on a local machine.
1. **Log in**
To begin with, you should check that you are correctly logged in and that you have `git-lfs` installed so that your fine-tuned model can automatically be uploaded.
Run:
```bash
huggingface-cli login
```
to login. It is recommended to login with your access token that can be found under your hugging face profile (icon in the top right corner on [hf.co](http://hf.co/), then Settings -> Access Tokens -> User Access Tokens -> New Token (if haven't generated one already)
You can then copy-paste this token to log in locally.
2. **Create your model repository**
First, let's make sure that `git-lfs` is correctly installed. To so, simply run:
```bash
git-lfs -v
```
The output should show something like `git-lfs/2.13.2 (GitHub; linux amd64; go 1.15.4)`. If your console states that the `git-lfs` command was not found, please make
sure to install it [here](https://git-lfs.github.com/) or simply via:
```bash
sudo apt-get install git-lfs
```
Now you can create your model repository which will contain all relevant files to
reproduce your training. You can either directly create the model repository on the
Hub (Settings -> New Model) or via the CLI. Here we choose to use the CLI instead.
Assuming that we want to call our model repository *xls-r-ab-test*, we can run the
following command:
```bash
huggingface-cli repo create xls-r-ab-test
```
You can now see the model on the Hub, *e.g.* under https://huggingface.co/hf-test/xls-r-ab-test .
Let's clone the repository so that we can define our training script inside.
```bash
git lfs install
git clone https://huggingface.co/hf-test/xls-r-ab-test
```
3. **Add your training script and `run`-command to the repository**
We encourage participants to add all relevant files for training directly to the
directory so that everything is fully reproducible.
Let's first copy-paste the official training script from our clone
of `transformers` to our just created directory:
```bash
cp ~/transformers/examples/pytorch/speech-recognition/run_speech_recognition_ctc.py ./
```
Next, we'll create a bash file to define the hyper-parameters and configurations
for training. More detailed information on different settings (single-GPU vs. multi-GPU) can be found [here](https://github.com/huggingface/transformers/tree/main/examples/pytorch/speech-recognition#connectionist-temporal-classification).
For demonstration purposes, we will use a dummy XLS-R model `model_name_or_path="hf-test/xls-r-dummy"` on the very low-resource language of "Abkhaz" of [Common Voice 7](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0): `dataset_config_name="ab"` for just a single epoch.
Before starting to train, let's make sure we have installed all the required libraries. You might want to run:
```bash
pip install -r ~/transformers/examples/pytorch/speech-recognition/requirements.txt
```
Alright, finally we can define the training script. We'll simply use some
dummy hyper-parameters and configurations for demonstration purposes.
Note that we add the flag `--use_auth_token` so that datasets requiring access,
such as [Common Voice 7](https://huggingface.co/datasets/mozilla-foundation/common_voice_7_0) can be downloaded. In addition, we add the `--push_to_hub` flag to make use of the
[Trainers `push_to-hub` functionality](https://huggingface.co/docs/transformers/main/en/main_classes/trainer#transformers.Trainer.push_to_hub) so that your model will be automatically uploaded to the Hub.
Let's copy the following code snippet in a file called `run.sh`
```bash
echo '''python run_speech_recognition_ctc.py \
--dataset_name="mozilla-foundation/common_voice_7_0" \
--model_name_or_path="hf-test/xls-r-dummy" \
--dataset_config_name="ab" \
--output_dir="./" \
--overwrite_output_dir \
--max_steps="10" \
--per_device_train_batch_size="2" \
--learning_rate="3e-4" \
--save_total_limit="1" \
--evaluation_strategy="steps" \
--text_column_name="sentence" \
--length_column_name="input_length" \
--save_steps="5" \
--layerdrop="0.0" \
--freeze_feature_encoder \
--gradient_checkpointing \
--fp16 \
--group_by_length \
--push_to_hub \
--use_auth_token \
--do_train --do_eval''' > run.sh
```
4. **Start training**
Now all that is left to do is to start training the model by executing the
run file.
```bash
bash run.sh
```
The training should not take more than a couple of minutes.
During the training intermediate saved checkpoints are automatically uploaded to
your model repository as can be seen [on this commit](https://huggingface.co/hf-test/xls-r-ab-test/commit/0eb19a0fca4d7d163997b59663d98cd856022aa6) .
At the end of the training, the [Trainer](https://huggingface.co/docs/transformers/main/en/main_classes/trainer) automatically creates a nice model card and all
relevant files are uploaded.
5. **Tips for real model training**
The above steps illustrate how a model can technically be fine-tuned.
However as you can see on the model card [hf-test/xls-r-ab-test](https://huggingface.co/hf-test/xls-r-ab-test), our demonstration has a very poor performance which is
not surprising given that we trained for just 10 steps on a randomly initialized
model.
For real model training, it is recommended to use one of the actual pre-trained XLS-R models:
- [300M parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-300m)
- [1B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-1b)
- [2B parameters version](https://huggingface.co/facebook/wav2vec2-xls-r-2b)
Also, the hyper-parameters should be carefully chosen depending on the dataset.
As an example, we will fine-tune the 300M parameters model on Swedish on a single
TITAN RTX 24GB GPU.
The model will be called `"xls-r-300m-sv"`.
Following the above steps we first create the model:
```bash
huggingface-cli repo create xls-r-300m-sv
```
, clone it locally (assuming the `<username>` is `hf-test`)
```bash
git clone hf-test/xls-r-300m-sv
```
, and, define the following hyperparameters for training
```bash
echo '''python run_speech_recognition_ctc.py \
--dataset_name="mozilla-foundation/common_voice_7_0" \
--model_name_or_path="facebook/wav2vec2-xls-r-300m" \
--dataset_config_name="sv-SE" \
--output_dir="./" \
--overwrite_output_dir \
--num_train_epochs="50" \
--per_device_train_batch_size="8" \
--per_device_eval_batch_size="8" \
--gradient_accumulation_steps="4" \
--learning_rate="7.5e-5" \
--warmup_steps="2000" \
--length_column_name="input_length" \
--evaluation_strategy="steps" \
--text_column_name="sentence" \
--chars_to_ignore , ? . ! \- \; \: \" “ % ‘ ” � — ’ … – \
--save_steps="500" \
--eval_steps="500" \
--logging_steps="100" \
--layerdrop="0.0" \
--activation_dropout="0.1" \
--save_total_limit="3" \
--freeze_feature_encoder \
--feat_proj_dropout="0.0" \
--mask_time_prob="0.75" \
--mask_time_length="10" \
--mask_feature_prob="0.25" \
--mask_feature_length="64" \
--gradient_checkpointing \
--use_auth_token \
--fp16 \
--group_by_length \
--do_train --do_eval \
--push_to_hub''' > run.sh
```
The training takes *ca.* 7 hours and yields a reasonable test word
error rate of 27% as can be seen on the automatically generated [model card](https://huggingface.co/hf-test/xls-r-300m-sv).
The above-chosen hyperparameters probably work quite well on a range of different
datasets and languages but are by no means optimal. It is up to you to find a good set of
hyperparameters.
## How to finetune with OVH cloud
[](https://youtu.be/XkMnYocAEO0) For a more detailed guide on setting up OVHcloud please watch this video: https://youtu.be/XkMnYocAEO0
### Creating an OVHCloud account
*TIP*: If you haven't created a project on OVHcloud yet, make sure you've received your GPU voucher code *beforehand*,
so that you can skip entering the credit card information.
1. If you're a US citizen, create an account via [OVHcloud.CA](https://ovhcloud.ca/).
If you're from anywhere else in the world, create an account via [OVHcloud.COM](https://ovhcloud.com/).
2. Once logged in, click `Public Cloud` from the top menu and then click `Create your first OVH Public Cloud project`.
Then enter a project name (e.g. "huggingface"), enter your voucher code, and click `Continue` -> `Create my project`.
*Note: if you see a request for credit card details during the last step, and you can't skip it, then your voucher code
is invalid. Please report it to the [#ovh-support](https://discord.gg/p4qqDV3M) channel on Discord.*
### Setting up an AI notebook
1. Go to the `Public Cloud` page and select `Project Management` -> `Users & Roles` from the menu on the left.
2. Click `+ Add user`. Write a user description (e.g. `AI Trainer`), and select an `AI Training Operator` user role.
Click `Confirm`.
3. Write down the *username* and *password* (at the top of the screen) somewhere. They will be needed during step 7.
4. Select `AI & Machine Learning` -> `AI Training` from the menu on the left.
Click `+ Launch a new job` on the AI Training page.
5. On the `Launch a new job` page:
* In `1. Choose a region` select a region closest to you.
* In `2. Enter the Docker image` select `Custom image` -> `baaastijn/ovh_huggingface`.
* You can skip steps `3.` and `4.` if you will be using the Hugging Face Hub to store the models after training.
* In `5. Configure your job` select **1** `GPU`.
* Validate the info and Create the job.
6. On the `AI Training Jobs` screen wait until the job's status changes from `Pending` to `Running`.
7. Click `HTTP Access` from the Job's details page and log in with the AI training user you've created earlier.
Once logged in, you can close the page and click `HTTP Access` to launch a JupyterLab notebook.
8. Awesome, now you have a free GPU-enabled Jupyter instance!
**Note**: If you're an experienced Docker user, feel free to create a custom docker image with all of the needed packages
like the one in step 5. The Dockerfile for it is available here:
[baaastijn/Dockerimages](https://github.com/baaastijn/Dockerimages/tree/main/Hugginface_challenge_speech).
Once you've built your image, push it to https://hub.docker.com/ and select it during the OVHcloud job creation.
For more quick tutorials about OVHcloud AI products, check out the showcase https://vimeo.com/showcase/8903300
## How to combine n-gram with acoustic model
Having trained a speech recognition model with CTC as shown in the section above,
one can further improve the model's performance by adding an **n-gram language model**
to the decoding process of the model. By doing so, we are replacing the naive greedy decoding
with **n-gram-boosted** beam search decoding.
N-gram language models can be built on CPU in just a few minutes. *N-gram-boosted* beam search decoding noticeably slows down the
inference time, but also yields significant word error rates improvements - usually between 10-40 %.
You can find an in-detail blog post on how to build an *n-gram* [here](https://huggingface.co/blog/wav2vec2-with-ngram).
The blog post can be opened in a google colab and by adapting three lines of the example for your use case, one can directly
create an *n-gram* in the google colab.
The blog post gives in-detail instructions on how to build an n-gram and how to add it to your trained speech recognition model.
- why one should add an *n-gram* to her/his speech recognition system,
- how to build an *n-gram*, and,
- how to add the built *n-gram* the speech recognition system for seamless decoding
Our previously trained model - [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) - enjoys a 30% word error rate reduction after
having added an n-gram. As shown in the example of the blog post, we strongly advise participants to upload all files required for combining
the *n-gram* with a trained speech recognition model directly into the same model repository.
## Evaluation
Finally, we have arrived at the most fun part of the challenge - sitting back and
watching the model transcribe audio. If possible, every participant should evaluate
the speech recognition system on the test set of Common Voice 7 and
ideally also on the real-world audio data (if available).
For languages that have neither a Common Voice evaluation dataset nor a real world
evaluation dataset, please contact the organizers on Discord so that we can work
together to find some evaluation data.
As a first step, one should copy the official `eval.py` script to her/his model
repository. Let's use our previously trained [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) again as an example.
Assuming that we have a clone of the model's repo under `~/xls-r-300m-sv`, we can
copy the `eval.py` script to the repo.
```bash
cp ~/transformers/examples/research_projects/robust-speech-event/eval.py ~/xls-r-300m-sv
```
Next, we should adapt `eval.py` so that it fits our evaluation data. Here it is
important to keep the `eval.py` file in the following format:
- 1. The following input arguments should not be changed and keep their original functionality/meaning (being to load the model and dataset): `"--model_id"`, `"--dataset"`, `"--config"`, `"--split"`. We recommend to not change any of the code written under `if __name__ == "__main__":`.
- 2. The function `def log_results(result: Dataset, args: Dict[str, str])` should also not be changed. The function expects the above names attached to the `args` object as well as a `datasets.Dataset` object, called `result` which includes all predictions and target transcriptions under the names `"predictions"` and `"targets"` respectively.
- 3. All other code can be changed and adapted. Participants are especially invited to change the `def normalize_text(text: str) -> str:` function as this might be a very language and model-training specific function.
- 4. **Important**: It is not allowed to "cheat" in any way when in comes to pre-and postprocessing. In short, "cheating" refers to any of the following:
- a. Somehow giving the model access to the target transcriptions to improve performance. The model is not allowed to use the target transcriptions to generate its predictions.
- b. Pre-processing the target transcriptions in a way that makes the target transcriptions lose their original meaning. This corresponds to what has already been said in [Data and Preprocessing](#data-and-preprocessing) and is somewhat of a grey zone. It means that one should not remove characters that would make a word to lose its meaning. E.g., it is not allowed to replace all `e` in English with `i` and simply make the model learn that `e` and `i` are the same letter for a better word error rate. This would destroy the meaning of words such as `fell -> fill`. However, it is totally fine to normalize (*e.g.* lowercase) all letters, remove punctuation. There can be a lot of language-specific exceptions and in case you are not sure whether your target transcription pre-processing is allowed, please ask on the Discord channel.
Uff, that was a lot of text describing how to make sure your `eval.py` script
is in the correct format. If you have any questions, please ask openly in Discord.
Great, now that we have adapted the `eval.py` script, we can lean back and run the
evaluation.
First, one should evaluate the model on Common Voice 7's test data. This might
already have been done for your acoustic model during training but in case you
added an *n-gram* language model after having fine-tuned the acoustic model, you
should now see a nice improvement.
The command to evaluate our test model [xls-r-300m-sv](https://huggingface.co/hf-test/xls-r-300m-sv) on Common Voice 7's test data is the following:
```bash
cd xls-r-300m-sv
./eval.py --model_id ./ --dataset mozilla-foundation/common_voice_7_0 --config sv-SE --split test --log_outputs
```
To log each of the model's predictions with the target transcriptions, you can just
add the `--log_outputs` flag.
Running this command should automatically create the file:
`mozilla-foundation_common_voice_7_0_sv-SE_test_eval_results.txt` that contains
both the word- and character error rate.
In a few days, we will give everybody access to some real-world audio data for as many languages as possible.
If your language has real-world audio data, it will most likely have audio input
of multiple minutes. 🤗Transformer's [ASR pipeline](https://huggingface.co/docs/transformers/main/en/main_classes/pipelines#transformers.AutomaticSpeechRecognitionPipeline) supports audio chunking out-of-the-box. You only need to specify
how song each audio chunk should be (`chunk_length_s`) and how much audio stride
(`stride_length_s`) each chunk should use.
For more information on the chunking works, please have a look at [this nice blog post](TODO: ).
In the case of `xls-r-300m-sv`, the following command can be run:
```bash
cd xls-r-300m-sv
./eval.py --model_id hf-test/xls-r-300m-sv --dataset <to-be-announced> --config sv --split validation --chunk_length_s 5.0 --stride_length_s 1.0 --log_outputs
```
Great, now you should have successfully evaluated your model. Finally, there is one
**important** thing you should do so that your model is taken into account
for the final evaluation. You should add two tags to your model, one being `robust-speech-event`, one being the ISO code of your chosen language, *e.g.* `"sv"` for the
exemplary model we used above. You can find a list of all available languages and
their ISO code [here](https://huggingface.co/languages).
To add the tags, simply edit the README.md of your model repository and add
```
- "sv"
- "robust-speech-event"
```
under `tags:` as done [here](https://huggingface.co/hf-test/xls-r-300m-sv/commit/a495fd70c96bb7d019729be9273a265c2557345e).
To verify that you've added the tags correctly make sure that your model
appears when clicking on [this link](https://huggingface.co/models?other=robust-speech-event).
Great that's it! This should give you all the necessary information to evaluate
your model. For the final evaluation, we will verify each evaluation result to
determine the final score and thereby the winning models for each language.
The final score is calculated as follows:
```bash
FINAL_SCORE = 1/3 * WER_Common_Voice_7_test + 1/3 * WER_REAL_AUDIO_DEV + 1/3 * WER_REAL_AUDIO_TEST
```
The dataset `WER_REAL_AUDIO_TEST` is hidden and will only be published
at the end of the robust speech challenge.
If there is no real audio data for your language the final score will be
computed solely based on the Common Voice 7 test dataset. If there is also
no Common Voice 7 test dataset for your language, we will see together how to
score your model - if this is the case, please don't be discouraged. We are
especially excited about speech recognition systems of such low-resource
languages and will make sure that we'll decide on a good approach to evaluating
your model.
## Prizes
TODO(Patrick, Omar, ...)
## Communication and Problems
If you encounter any problems or have any questions, you should use one of the following platforms
depending on your type of problem. Hugging Face is an "open-source-first" organization meaning
that we'll try to solve all problems in the most public and most transparent way possible so that everybody
in the community profits.
The following table summarizes what platform to use for which problem.
- Problem/question/bug with the 🤗 Datasets library that you think is a general problem that also impacts other people, please open an [Issues on Datasets](https://github.com/huggingface/datasets/issues/new?assignees=&labels=bug&template=bug-report.md&title=) and ping @anton-l and @patrickvonplaten.
- Problem/question/bug with the 🤗 Transformers library that you think is a general problem that also impacts other people, please open an [Issues on Transformers](https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title=) and ping @anton-l and @patrickvonplaten.
- Problem/question with a modified, customized training script that is less likely to impact other people, please post your problem/question [on the forum](https://discuss.huggingface.co/) and ping @anton-l and @patrickvonplaten.
- Questions regarding access to the OVHcloud GPU, please ask in the Discord channel **#ovh-support**.
- Other questions regarding the event, rules of the event, or if you are not sure where to post your question, please ask in the Discord channel **#sprint-discussions**.
## Talks
We are very excited to be hosting 2 days of talks from Kensho-Technologies, Mozilla's Common Voice, Meta AI Research and Hugging Face.
### Thursday, January 20th
Speaker | Topic | Time | Video |
|-------------|---------------------------------|------------------------|------------------------|
| Patrick von Platen, Hugging Face | Introduction to Robust Speech Challenge | 4h30pm - 5h00pm UTC | [](https://www.youtube.com/watch?v=X9e5Tto-Iuk)
| Raymond Grossman and Jeremy Lopez, Kensho-Technologies | Pyctcdecode & Speech2text decoding | 5h30pm - 6h00pm UTC | [](https://www.youtube.com/watch?v=mp7fHMTnK9A)
### Friday, January 21th
Speaker | Topic | Time | Video |
|-------------|---------------------------------|------------------------|------------------------|
| Gabriel Habayeb, Mozilla Common Voice | Unlocking global speech with Mozilla Common Voice | 4h30pm - 5h00pm UTC | [](https://www.youtube.com/watch?v=Vvn984QmAVg)
| Changhan Wang, Meta AI Research | XLS-R: Large-Scale Cross-lingual Speech Representation Learning on 128 Languages | 5h30pm - 6h00pm UTC | [](https://www.youtube.com/watch?v=ic_J7ZCROBM)
### Talks & Speakers
#### Patrick von Platen, Research Engineer, Hugging Face
- Talk: Introduction to Robust Speech Challenge
- Abstract: In this talk, Patrick outlines the Robust Speech Challenge and gives tips and tricks on how to train and evaluate speech recognition systems with 🤗 Transformers and 🤗 Datasets, and PyTorch.
- Speaker info: Patrick von Platen is a research engineer at Hugging Face and one of the core maintainers of the popular Transformers library. He specializes in speech recognition, encoder-decoder models, and long-range sequence modeling. Before joining Hugging Face, Patrick researched speech recognition at Uber AI, Cambridge University, and RWTH Aachen University.
#### Raymond Grossman, Jeremy Lopez, Machine Learning Engineer, Kensho Technologies
- Talk: PyCTCDecode & Speech2text decoding
- Abstract: PyCTCDecode is a fast and feature-rich CTC beam search decoder for speech recognition written in Python, providing n-gram (kenlm) language model support similar to PaddlePaddle's decoder, but incorporating many new features such as byte pair encoding and real-time decoding to support models like Nvidia's Conformer-CTC or Facebook's Wav2Vec2.
- Speaker info :
- Raymond works as a machine learning engineer at Kensho Technologies, specializing in speech and natural language domains. Before coming to Kensho, he studied mathematics at Princeton and was an avid Kaggler under the moniker @ToTrainThemIsMyCause.
- Jeremy is a machine learning engineer at Kensho Technologies and has worked on a variety of different topics including search and speech recognition. Before working at Kensho, he earned a PhD in experimental particle physics at MIT and continued doing physics research as a postdoc at the University of Colorado Boulder.
#### Gabriel Habayeb, Data Engineer, Common Voice @ Mozilla
- Talk: Unlocking global speech with Mozilla Common Voice
- Abstract: Hear from Common Voice Data Engineer Gabriel Habayeb (Mozilla Foundation) as he talks about how Common Voice makes it easy to crowdsource voice data in global languages, as well as getting key insights into the dataset itself, how we maintain quality, use metadata - and our plans for the future!
- Speaker info: Gabriel is a software developer with the Common Voice team at the Mozilla Foundation with a focus on data engineering. Before joining the Foundation, he spent the last six years working across different industries, including education, enterprise and not-for-profit organizations.
#### Changhan Wang, Main author of XLS-R and Research Engineer, Meta AI Research
- Talk: XLS-R: Large-Scale Cross-lingual Speech Representation Learning on 128 Languages
- Abstract: In this talk, Changhan will present XLS-R, a large-scale model for cross-lingual speech representation learning based on wav2vec 2.0. XLS-R has up to 2B parameters and was trained on nearly half a million hours of publicly available speech audio in 128 languages, an order of magnitude more public data than the largest known prior work. On the CoVoST-2 speech translation benchmark, XLS-R improves the previous state of the art by an average of 7.4 BLEU over 21 translation directions into English. For speech recognition, XLS-R improves over the best known prior work on BABEL, MLS, CommonVoice as well as VoxPopuli, lowering error rates by 14-34% relative on average. XLS-R also sets a new state of the art on VoxLingua107 language identification. The XLS-R team hopes to work together with the open-source community to improve speech processing tasks for many more languages of the world.
## General Tips and Tricks
- Memory efficient training:
In case, you are getting out-of-memory errors on your GPU, we recommend to use
[bitsandbytes](https://github.com/TimDettmers/bitsandbytes) to replace the
native memory-intensive Adam optimizer with the one of `bitsandbytes`. You
can simply run the script `./run_speech_recognition_ctc_bnb.py` provided in this
folder that makes use of `bitsandbytes` instead of the official one.
- Dataset streaming
TODO(Patrick)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/robust-speech-event/run_speech_recognition_ctc_bnb.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
""" Fine-tuning a 🤗 Transformers CTC model for automatic speech recognition"""
import functools
import json
import logging
import os
import re
import sys
import warnings
from dataclasses import dataclass, field
from typing import Dict, List, Optional, Union
import bitsandbytes as bnb
import datasets
import numpy as np
import torch
from datasets import DatasetDict, load_dataset, load_metric
import transformers
from transformers import (
AutoConfig,
AutoFeatureExtractor,
AutoModelForCTC,
AutoProcessor,
AutoTokenizer,
HfArgumentParser,
Trainer,
TrainingArguments,
Wav2Vec2Processor,
set_seed,
)
from transformers.trainer_pt_utils import get_parameter_names
from transformers.trainer_utils import get_last_checkpoint, is_main_process
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.16.0.dev0")
require_version("datasets>=1.13.3", "To fix: pip install -r examples/pytorch/text-classification/requirements.txt")
logger = logging.getLogger(__name__)
def list_field(default=None, metadata=None):
return field(default_factory=lambda: default, metadata=metadata)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
tokenizer_name_or_path: Optional[str] = field(
default=None,
metadata={"help": "Path to pretrained tokenizer or tokenizer identifier from huggingface.co/models"},
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_encoder: bool = field(
default=True, metadata={"help": "Whether to freeze the feature encoder layers of the model."}
)
attention_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for the attention probabilities."}
)
activation_dropout: float = field(
default=0.0, metadata={"help": "The dropout ratio for activations inside the fully connected layer."}
)
feat_proj_dropout: float = field(default=0.0, metadata={"help": "The dropout ratio for the projected features."})
hidden_dropout: float = field(
default=0.0,
metadata={
"help": "The dropout probability for all fully connected layers in the embeddings, encoder, and pooler."
},
)
final_dropout: float = field(
default=0.0,
metadata={"help": "The dropout probability for the final projection layer."},
)
mask_time_prob: float = field(
default=0.05,
metadata={
"help": (
"Probability of each feature vector along the time axis to be chosen as the start of the vector "
"span to be masked. Approximately ``mask_time_prob * sequence_length // mask_time_length`` feature "
"vectors will be masked along the time axis."
)
},
)
mask_time_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the time axis."},
)
mask_feature_prob: float = field(
default=0.0,
metadata={
"help": (
"Probability of each feature vector along the feature axis to be chosen as the start of the vectorspan"
" to be masked. Approximately ``mask_feature_prob * sequence_length // mask_feature_length`` feature"
" bins will be masked along the time axis."
)
},
)
mask_feature_length: int = field(
default=10,
metadata={"help": "Length of vector span to mask along the feature axis."},
)
layerdrop: float = field(default=0.0, metadata={"help": "The LayerDrop probability."})
ctc_loss_reduction: Optional[str] = field(
default="mean", metadata={"help": "The way the ctc loss should be reduced. Should be one of 'mean' or 'sum'."}
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
dataset_config_name: str = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: str = field(
default="train+validation",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
eval_split_name: str = field(
default="test",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
audio_column_name: str = field(
default="audio",
metadata={"help": "The name of the dataset column containing the audio data. Defaults to 'audio'"},
)
text_column_name: str = field(
default="text",
metadata={"help": "The name of the dataset column containing the text data. Defaults to 'text'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of validation examples to this "
"value if set."
)
},
)
chars_to_ignore: Optional[List[str]] = list_field(
default=None,
metadata={"help": "A list of characters to remove from the transcripts."},
)
eval_metrics: List[str] = list_field(
default=["wer"],
metadata={"help": "A list of metrics the model should be evaluated on. E.g. `'wer cer'`"},
)
max_duration_in_seconds: float = field(
default=20.0,
metadata={
"help": (
"Filter audio files that are longer than `max_duration_in_seconds` seconds to"
" 'max_duration_in_seconds`"
)
},
)
min_duration_in_seconds: float = field(
default=0.0, metadata={"help": "Filter audio files that are shorter than `min_duration_in_seconds` seconds"}
)
preprocessing_only: bool = field(
default=False,
metadata={
"help": (
"Whether to only do data preprocessing and skip training. This is especially useful when data"
" preprocessing errors out in distributed training due to timeout. In this case, one should run the"
" preprocessing in a non-distributed setup with `preprocessing_only=True` so that the cached datasets"
" can consequently be loaded in distributed training"
)
},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"If :obj:`True`, will use the token generated when running"
":obj:`huggingface-cli login` as HTTP bearer authorization for remote files."
)
},
)
unk_token: str = field(
default="[UNK]",
metadata={"help": "The unk token for the tokenizer"},
)
pad_token: str = field(
default="[PAD]",
metadata={"help": "The padding token for the tokenizer"},
)
word_delimiter_token: str = field(
default="|",
metadata={"help": "The word delimiter token for the tokenizer"},
)
phoneme_language: Optional[str] = field(
default=None,
metadata={
"help": (
"The target language that should be used be"
" passed to the tokenizer for tokenization. Note that"
" this is only relevant if the model classifies the"
" input audio to a sequence of phoneme sequences."
)
},
)
@dataclass
class DataCollatorCTCWithPadding:
"""
Data collator that will dynamically pad the inputs received.
Args:
processor (:class:`~transformers.AutoProcessor`)
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
max_length_labels (:obj:`int`, `optional`):
Maximum length of the ``labels`` returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
processor: AutoProcessor
padding: Union[bool, str] = "longest"
pad_to_multiple_of: Optional[int] = None
pad_to_multiple_of_labels: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# split inputs and labels since they have to be of different lengths and need
# different padding methods
input_features = [{"input_values": feature["input_values"]} for feature in features]
label_features = [{"input_ids": feature["labels"]} for feature in features]
batch = self.processor.pad(
input_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
labels_batch = self.processor.pad(
labels=label_features,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of_labels,
return_tensors="pt",
)
# replace padding with -100 to ignore loss correctly
labels = labels_batch["input_ids"].masked_fill(labels_batch.attention_mask.ne(1), -100)
batch["labels"] = labels
return batch
def create_vocabulary_from_data(
datasets: DatasetDict,
word_delimiter_token: Optional[str] = None,
unk_token: Optional[str] = None,
pad_token: Optional[str] = None,
):
# Given training and test labels create vocabulary
def extract_all_chars(batch):
all_text = " ".join(batch["target_text"])
vocab = list(set(all_text))
return {"vocab": [vocab], "all_text": [all_text]}
vocabs = datasets.map(
extract_all_chars,
batched=True,
batch_size=-1,
keep_in_memory=True,
remove_columns=datasets["train"].column_names,
)
# take union of all unique characters in each dataset
vocab_set = functools.reduce(
lambda vocab_1, vocab_2: set(vocab_1["vocab"][0]) | set(vocab_2["vocab"][0]), vocabs.values()
)
vocab_dict = {v: k for k, v in enumerate(sorted(vocab_set))}
# replace white space with delimiter token
if word_delimiter_token is not None:
vocab_dict[word_delimiter_token] = vocab_dict[" "]
del vocab_dict[" "]
# add unk and pad token
if unk_token is not None:
vocab_dict[unk_token] = len(vocab_dict)
if pad_token is not None:
vocab_dict[pad_token] = len(vocab_dict)
return vocab_dict
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logger.setLevel(logging.INFO if is_main_process(training_args.local_rank) else logging.WARN)
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}, "
f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(training_args.local_rank):
transformers.utils.logging.set_verbosity_info()
logger.info("Training/evaluation parameters %s", training_args)
# Set seed before initializing model.
set_seed(training_args.seed)
# 1. First, let's load the dataset
raw_datasets = DatasetDict()
if training_args.do_train:
raw_datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.train_split_name,
token=data_args.use_auth_token,
)
if data_args.audio_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--audio_column_name '{data_args.audio_column_name}' not found in dataset '{data_args.dataset_name}'."
" Make sure to set `--audio_column_name` to the correct audio column - one of"
f" {', '.join(raw_datasets['train'].column_names)}."
)
if data_args.text_column_name not in raw_datasets["train"].column_names:
raise ValueError(
f"--text_column_name {data_args.text_column_name} not found in dataset '{data_args.dataset_name}'. "
"Make sure to set `--text_column_name` to the correct text column - one of "
f"{', '.join(raw_datasets['train'].column_names)}."
)
if data_args.max_train_samples is not None:
raw_datasets["train"] = raw_datasets["train"].select(range(data_args.max_train_samples))
if training_args.do_eval:
raw_datasets["eval"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=data_args.eval_split_name,
token=data_args.use_auth_token,
)
if data_args.max_eval_samples is not None:
raw_datasets["eval"] = raw_datasets["eval"].select(range(data_args.max_eval_samples))
# 2. We remove some special characters from the datasets
# that make training complicated and do not help in transcribing the speech
# E.g. characters, such as `,` and `.` do not really have an acoustic characteristic
# that could be easily picked up by the model
chars_to_ignore_regex = (
f'[{"".join(data_args.chars_to_ignore)}]' if data_args.chars_to_ignore is not None else None
)
text_column_name = data_args.text_column_name
def remove_special_characters(batch):
if chars_to_ignore_regex is not None:
batch["target_text"] = re.sub(chars_to_ignore_regex, "", batch[text_column_name]).lower() + " "
else:
batch["target_text"] = batch[text_column_name].lower() + " "
return batch
with training_args.main_process_first(desc="dataset map special characters removal"):
raw_datasets = raw_datasets.map(
remove_special_characters,
remove_columns=[text_column_name],
desc="remove special characters from datasets",
)
# save special tokens for tokenizer
word_delimiter_token = data_args.word_delimiter_token
unk_token = data_args.unk_token
pad_token = data_args.pad_token
# 3. Next, let's load the config as we might need it to create
# the tokenizer
# load config
config = AutoConfig.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# 4. Next, if no tokenizer file is defined,
# we create the vocabulary of the model by extracting all unique characters from
# the training and evaluation datasets
# We need to make sure that only first rank saves vocabulary
# make sure all processes wait until vocab is created
tokenizer_name_or_path = model_args.tokenizer_name_or_path
tokenizer_kwargs = {}
if tokenizer_name_or_path is None:
# save vocab in training output dir
tokenizer_name_or_path = training_args.output_dir
vocab_file = os.path.join(tokenizer_name_or_path, "vocab.json")
with training_args.main_process_first():
if training_args.overwrite_output_dir and os.path.isfile(vocab_file):
os.remove(vocab_file)
with training_args.main_process_first(desc="dataset map vocabulary creation"):
if not os.path.isfile(vocab_file):
os.makedirs(tokenizer_name_or_path, exist_ok=True)
vocab_dict = create_vocabulary_from_data(
raw_datasets,
word_delimiter_token=word_delimiter_token,
unk_token=unk_token,
pad_token=pad_token,
)
# save vocab dict to be loaded into tokenizer
with open(vocab_file, "w") as file:
json.dump(vocab_dict, file)
# if tokenizer has just been created
# it is defined by `tokenizer_class` if present in config else by `model_type`
tokenizer_kwargs = {
"config": config if config.tokenizer_class is not None else None,
"tokenizer_type": config.model_type if config.tokenizer_class is None else None,
"unk_token": unk_token,
"pad_token": pad_token,
"word_delimiter_token": word_delimiter_token,
}
# 5. Now we can instantiate the feature extractor, tokenizer and model
# Note for distributed training, the .from_pretrained methods guarantee that only
# one local process can concurrently download model & vocab.
# load feature_extractor and tokenizer
tokenizer = AutoTokenizer.from_pretrained(
tokenizer_name_or_path,
token=data_args.use_auth_token,
**tokenizer_kwargs,
)
feature_extractor = AutoFeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, token=data_args.use_auth_token
)
# adapt config
config.update(
{
"feat_proj_dropout": model_args.feat_proj_dropout,
"attention_dropout": model_args.attention_dropout,
"hidden_dropout": model_args.hidden_dropout,
"final_dropout": model_args.final_dropout,
"mask_time_prob": model_args.mask_time_prob,
"mask_time_length": model_args.mask_time_length,
"mask_feature_prob": model_args.mask_feature_prob,
"mask_feature_length": model_args.mask_feature_length,
"gradient_checkpointing": training_args.gradient_checkpointing,
"layerdrop": model_args.layerdrop,
"ctc_loss_reduction": model_args.ctc_loss_reduction,
"pad_token_id": tokenizer.pad_token_id,
"vocab_size": len(tokenizer),
"activation_dropout": model_args.activation_dropout,
}
)
# create model
model = AutoModelForCTC.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
config=config,
token=data_args.use_auth_token,
)
# freeze encoder
if model_args.freeze_feature_encoder:
model.freeze_feature_encoder()
# 6. Now we preprocess the datasets including loading the audio, resampling and normalization
# Thankfully, `datasets` takes care of automatically loading and resampling the audio,
# so that we just need to set the correct target sampling rate and normalize the input
# via the `feature_extractor`
# make sure that dataset decodes audio with correct sampling rate
dataset_sampling_rate = next(iter(raw_datasets.values())).features[data_args.audio_column_name].sampling_rate
if dataset_sampling_rate != feature_extractor.sampling_rate:
raw_datasets = raw_datasets.cast_column(
data_args.audio_column_name, datasets.features.Audio(sampling_rate=feature_extractor.sampling_rate)
)
# derive max & min input length for sample rate & max duration
max_input_length = data_args.max_duration_in_seconds * feature_extractor.sampling_rate
min_input_length = data_args.min_duration_in_seconds * feature_extractor.sampling_rate
audio_column_name = data_args.audio_column_name
num_workers = data_args.preprocessing_num_workers
# `phoneme_language` is only relevant if the model is fine-tuned on phoneme classification
phoneme_language = data_args.phoneme_language
# Preprocessing the datasets.
# We need to read the audio files as arrays and tokenize the targets.
def prepare_dataset(batch):
# load audio
sample = batch[audio_column_name]
inputs = feature_extractor(sample["array"], sampling_rate=sample["sampling_rate"])
batch["input_values"] = inputs.input_values[0]
batch["input_length"] = len(batch["input_values"])
# encode targets
additional_kwargs = {}
if phoneme_language is not None:
additional_kwargs["phonemizer_lang"] = phoneme_language
batch["labels"] = tokenizer(batch["target_text"], **additional_kwargs).input_ids
return batch
with training_args.main_process_first(desc="dataset map preprocessing"):
vectorized_datasets = raw_datasets.map(
prepare_dataset,
remove_columns=next(iter(raw_datasets.values())).column_names,
num_proc=num_workers,
desc="preprocess datasets",
)
def is_audio_in_length_range(length):
return length > min_input_length and length < max_input_length
# filter data that is shorter than min_input_length
vectorized_datasets = vectorized_datasets.filter(
is_audio_in_length_range,
num_proc=num_workers,
input_columns=["input_length"],
)
# 7. Next, we can prepare the training.
# Let's use word error rate (WER) as our evaluation metric,
# instantiate a data collator and the trainer
# Define evaluation metrics during training, *i.e.* word error rate, character error rate
eval_metrics = {metric: load_metric(metric) for metric in data_args.eval_metrics}
# for large datasets it is advised to run the preprocessing on a
# single machine first with ``args.preprocessing_only`` since there will mostly likely
# be a timeout when running the script in distributed mode.
# In a second step ``args.preprocessing_only`` can then be set to `False` to load the
# cached dataset
if data_args.preprocessing_only:
logger.info(f"Data preprocessing finished. Files cached at {vectorized_datasets.cache_files}")
return
def compute_metrics(pred):
pred_logits = pred.predictions
pred_ids = np.argmax(pred_logits, axis=-1)
pred.label_ids[pred.label_ids == -100] = tokenizer.pad_token_id
pred_str = tokenizer.batch_decode(pred_ids)
# we do not want to group tokens when computing the metrics
label_str = tokenizer.batch_decode(pred.label_ids, group_tokens=False)
metrics = {k: v.compute(predictions=pred_str, references=label_str) for k, v in eval_metrics.items()}
return metrics
# Now save everything to be able to create a single processor later
if is_main_process(training_args.local_rank):
# save feature extractor, tokenizer and config
feature_extractor.save_pretrained(training_args.output_dir)
tokenizer.save_pretrained(training_args.output_dir)
config.save_pretrained(training_args.output_dir)
try:
processor = AutoProcessor.from_pretrained(training_args.output_dir)
except (OSError, KeyError):
warnings.warn(
"Loading a processor from a feature extractor config that does not"
" include a `processor_class` attribute is deprecated and will be removed in v5. Please add the following "
" attribute to your `preprocessor_config.json` file to suppress this warning: "
" `'processor_class': 'Wav2Vec2Processor'`",
FutureWarning,
)
processor = Wav2Vec2Processor.from_pretrained(training_args.output_dir)
# Instantiate custom data collator
data_collator = DataCollatorCTCWithPadding(processor=processor)
decay_parameters = get_parameter_names(model, [torch.nn.LayerNorm])
decay_parameters = [name for name in decay_parameters if "bias" not in name]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if n in decay_parameters],
"weight_decay": training_args.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if n not in decay_parameters],
"weight_decay": 0.0,
},
]
optimizer = bnb.optim.Adam8bit(
params=optimizer_grouped_parameters,
lr=training_args.learning_rate,
betas=(training_args.adam_beta1, training_args.adam_beta2),
eps=training_args.adam_epsilon,
)
optimizers = (optimizer, None)
# Initialize Trainer
trainer = Trainer(
model=model,
data_collator=data_collator,
args=training_args,
compute_metrics=compute_metrics,
train_dataset=vectorized_datasets["train"] if training_args.do_train else None,
eval_dataset=vectorized_datasets["eval"] if training_args.do_eval else None,
tokenizer=feature_extractor,
optimizers=optimizers,
)
# 8. Finally, we can start training
# Training
if training_args.do_train:
# use last checkpoint if exist
if last_checkpoint is not None:
checkpoint = last_checkpoint
elif os.path.isdir(model_args.model_name_or_path):
checkpoint = model_args.model_name_or_path
else:
checkpoint = None
train_result = trainer.train(resume_from_checkpoint=checkpoint)
trainer.save_model()
metrics = train_result.metrics
max_train_samples = (
data_args.max_train_samples
if data_args.max_train_samples is not None
else len(vectorized_datasets["train"])
)
metrics["train_samples"] = min(max_train_samples, len(vectorized_datasets["train"]))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
results = {}
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
max_eval_samples = (
data_args.max_eval_samples if data_args.max_eval_samples is not None else len(vectorized_datasets["eval"])
)
metrics["eval_samples"] = min(max_eval_samples, len(vectorized_datasets["eval"]))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Write model card and (optionally) push to hub
config_name = data_args.dataset_config_name if data_args.dataset_config_name is not None else "na"
kwargs = {
"finetuned_from": model_args.model_name_or_path,
"tasks": "automatic-speech-recognition",
"tags": ["automatic-speech-recognition", data_args.dataset_name],
"dataset_args": (
f"Config: {config_name}, Training split: {data_args.train_split_name}, Eval split:"
f" {data_args.eval_split_name}"
),
"dataset": f"{data_args.dataset_name.upper()} - {config_name.upper()}",
}
if "common_voice" in data_args.dataset_name:
kwargs["language"] = config_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/robust-speech-event/eval.py | #!/usr/bin/env python3
import argparse
import re
from typing import Dict
import torch
from datasets import Audio, Dataset, load_dataset, load_metric
from transformers import AutoFeatureExtractor, pipeline
def log_results(result: Dataset, args: Dict[str, str]):
"""DO NOT CHANGE. This function computes and logs the result metrics."""
log_outputs = args.log_outputs
dataset_id = "_".join(args.dataset.split("/") + [args.config, args.split])
# load metric
wer = load_metric("wer")
cer = load_metric("cer")
# compute metrics
wer_result = wer.compute(references=result["target"], predictions=result["prediction"])
cer_result = cer.compute(references=result["target"], predictions=result["prediction"])
# print & log results
result_str = f"WER: {wer_result}\nCER: {cer_result}"
print(result_str)
with open(f"{dataset_id}_eval_results.txt", "w") as f:
f.write(result_str)
# log all results in text file. Possibly interesting for analysis
if log_outputs is not None:
pred_file = f"log_{dataset_id}_predictions.txt"
target_file = f"log_{dataset_id}_targets.txt"
with open(pred_file, "w") as p, open(target_file, "w") as t:
# mapping function to write output
def write_to_file(batch, i):
p.write(f"{i}" + "\n")
p.write(batch["prediction"] + "\n")
t.write(f"{i}" + "\n")
t.write(batch["target"] + "\n")
result.map(write_to_file, with_indices=True)
def normalize_text(text: str) -> str:
"""DO ADAPT FOR YOUR USE CASE. this function normalizes the target text."""
chars_to_ignore_regex = '[,?.!\-\;\:"“%‘”�—’…–]' # noqa: W605 IMPORTANT: this should correspond to the chars that were ignored during training
text = re.sub(chars_to_ignore_regex, "", text.lower())
# In addition, we can normalize the target text, e.g. removing new lines characters etc...
# note that order is important here!
token_sequences_to_ignore = ["\n\n", "\n", " ", " "]
for t in token_sequences_to_ignore:
text = " ".join(text.split(t))
return text
def main(args):
# load dataset
dataset = load_dataset(args.dataset, args.config, split=args.split, token=True)
# for testing: only process the first two examples as a test
# dataset = dataset.select(range(10))
# load processor
feature_extractor = AutoFeatureExtractor.from_pretrained(args.model_id)
sampling_rate = feature_extractor.sampling_rate
# resample audio
dataset = dataset.cast_column("audio", Audio(sampling_rate=sampling_rate))
# load eval pipeline
if args.device is None:
args.device = 0 if torch.cuda.is_available() else -1
asr = pipeline("automatic-speech-recognition", model=args.model_id, device=args.device)
# map function to decode audio
def map_to_pred(batch):
prediction = asr(
batch["audio"]["array"], chunk_length_s=args.chunk_length_s, stride_length_s=args.stride_length_s
)
batch["prediction"] = prediction["text"]
batch["target"] = normalize_text(batch["sentence"])
return batch
# run inference on all examples
result = dataset.map(map_to_pred, remove_columns=dataset.column_names)
# compute and log_results
# do not change function below
log_results(result, args)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_id", type=str, required=True, help="Model identifier. Should be loadable with 🤗 Transformers"
)
parser.add_argument(
"--dataset",
type=str,
required=True,
help="Dataset name to evaluate the `model_id`. Should be loadable with 🤗 Datasets",
)
parser.add_argument(
"--config", type=str, required=True, help="Config of the dataset. *E.g.* `'en'` for Common Voice"
)
parser.add_argument("--split", type=str, required=True, help="Split of the dataset. *E.g.* `'test'`")
parser.add_argument(
"--chunk_length_s", type=float, default=None, help="Chunk length in seconds. Defaults to 5 seconds."
)
parser.add_argument(
"--stride_length_s", type=float, default=None, help="Stride of the audio chunks. Defaults to 1 second."
)
parser.add_argument(
"--log_outputs", action="store_true", help="If defined, write outputs to log file for analysis."
)
parser.add_argument(
"--device",
type=int,
default=None,
help="The device to run the pipeline on. -1 for CPU (default), 0 for the first GPU and so on.",
)
args = parser.parse_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/run_squad_w_distillation.py | # coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" This is the exact same script as `examples/question-answering/run_squad.py` (as of 2020, January 8th) with an additional and optional step of distillation."""
import argparse
import glob
import logging
import os
import random
import timeit
import numpy as np
import torch
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
import transformers
from transformers import (
WEIGHTS_NAME,
AdamW,
BertConfig,
BertForQuestionAnswering,
BertTokenizer,
DistilBertConfig,
DistilBertForQuestionAnswering,
DistilBertTokenizer,
RobertaConfig,
RobertaForQuestionAnswering,
RobertaTokenizer,
XLMConfig,
XLMForQuestionAnswering,
XLMTokenizer,
XLNetConfig,
XLNetForQuestionAnswering,
XLNetTokenizer,
get_linear_schedule_with_warmup,
squad_convert_examples_to_features,
)
from transformers.data.metrics.squad_metrics import (
compute_predictions_log_probs,
compute_predictions_logits,
squad_evaluate,
)
from transformers.data.processors.squad import SquadResult, SquadV1Processor, SquadV2Processor
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
MODEL_CLASSES = {
"bert": (BertConfig, BertForQuestionAnswering, BertTokenizer),
"xlnet": (XLNetConfig, XLNetForQuestionAnswering, XLNetTokenizer),
"xlm": (XLMConfig, XLMForQuestionAnswering, XLMTokenizer),
"distilbert": (DistilBertConfig, DistilBertForQuestionAnswering, DistilBertTokenizer),
"roberta": (RobertaConfig, RobertaForQuestionAnswering, RobertaTokenizer),
}
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def to_list(tensor):
return tensor.detach().cpu().tolist()
def train(args, train_dataset, model, tokenizer, teacher=None):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(train_dataset, sampler=train_sampler, batch_size=args.train_batch_size)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
# Check if saved optimizer or scheduler states exist
if os.path.isfile(os.path.join(args.model_name_or_path, "optimizer.pt")) and os.path.isfile(
os.path.join(args.model_name_or_path, "scheduler.pt")
):
# Load in optimizer and scheduler states
optimizer.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "optimizer.pt")))
scheduler.load_state_dict(torch.load(os.path.join(args.model_name_or_path, "scheduler.pt")))
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 1
epochs_trained = 0
steps_trained_in_current_epoch = 0
# Check if continuing training from a checkpoint
if os.path.exists(args.model_name_or_path):
try:
# set global_step to gobal_step of last saved checkpoint from model path
checkpoint_suffix = args.model_name_or_path.split("-")[-1].split("/")[0]
global_step = int(checkpoint_suffix)
epochs_trained = global_step // (len(train_dataloader) // args.gradient_accumulation_steps)
steps_trained_in_current_epoch = global_step % (len(train_dataloader) // args.gradient_accumulation_steps)
logger.info(" Continuing training from checkpoint, will skip to saved global_step")
logger.info(" Continuing training from epoch %d", epochs_trained)
logger.info(" Continuing training from global step %d", global_step)
logger.info(" Will skip the first %d steps in the first epoch", steps_trained_in_current_epoch)
except ValueError:
logger.info(" Starting fine-tuning.")
tr_loss, logging_loss = 0.0, 0.0
model.zero_grad()
train_iterator = trange(
epochs_trained, int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0]
)
# Added here for reproductibility
set_seed(args)
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
# Skip past any already trained steps if resuming training
if steps_trained_in_current_epoch > 0:
steps_trained_in_current_epoch -= 1
continue
model.train()
if teacher is not None:
teacher.eval()
batch = tuple(t.to(args.device) for t in batch)
inputs = {
"input_ids": batch[0],
"attention_mask": batch[1],
"start_positions": batch[3],
"end_positions": batch[4],
}
if args.model_type != "distilbert":
inputs["token_type_ids"] = None if args.model_type == "xlm" else batch[2]
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[5], "p_mask": batch[6]})
if args.version_2_with_negative:
inputs.update({"is_impossible": batch[7]})
outputs = model(**inputs)
loss, start_logits_stu, end_logits_stu = outputs
# Distillation loss
if teacher is not None:
if "token_type_ids" not in inputs:
inputs["token_type_ids"] = None if args.teacher_type == "xlm" else batch[2]
with torch.no_grad():
start_logits_tea, end_logits_tea = teacher(
input_ids=inputs["input_ids"],
token_type_ids=inputs["token_type_ids"],
attention_mask=inputs["attention_mask"],
)
assert start_logits_tea.size() == start_logits_stu.size()
assert end_logits_tea.size() == end_logits_stu.size()
loss_fct = nn.KLDivLoss(reduction="batchmean")
loss_start = loss_fct(
nn.functional.log_softmax(start_logits_stu / args.temperature, dim=-1),
nn.functional.softmax(start_logits_tea / args.temperature, dim=-1),
) * (args.temperature**2)
loss_end = loss_fct(
nn.functional.log_softmax(end_logits_stu / args.temperature, dim=-1),
nn.functional.softmax(end_logits_tea / args.temperature, dim=-1),
) * (args.temperature**2)
loss_ce = (loss_start + loss_end) / 2.0
loss = args.alpha_ce * loss_ce + args.alpha_squad * loss
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel (not distributed) training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
# Log metrics
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
# Only evaluate when single GPU otherwise metrics may not average well
if args.local_rank == -1 and args.evaluate_during_training:
results = evaluate(args, model, tokenizer)
for key, value in results.items():
tb_writer.add_scalar("eval_{}".format(key), value, global_step)
tb_writer.add_scalar("lr", scheduler.get_lr()[0], global_step)
tb_writer.add_scalar("loss", (tr_loss - logging_loss) / args.logging_steps, global_step)
logging_loss = tr_loss
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(output_dir)
tokenizer.save_pretrained(output_dir)
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
torch.save(optimizer.state_dict(), os.path.join(output_dir, "optimizer.pt"))
torch.save(scheduler.state_dict(), os.path.join(output_dir, "scheduler.pt"))
logger.info("Saving optimizer and scheduler states to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, prefix=""):
dataset, examples, features = load_and_cache_examples(args, tokenizer, evaluate=True, output_examples=True)
if not os.path.exists(args.output_dir) and args.local_rank in [-1, 0]:
os.makedirs(args.output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(dataset)
eval_dataloader = DataLoader(dataset, sampler=eval_sampler, batch_size=args.eval_batch_size)
# multi-gpu evaluate
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
all_results = []
start_time = timeit.default_timer()
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
inputs = {"input_ids": batch[0], "attention_mask": batch[1]}
if args.model_type != "distilbert":
inputs["token_type_ids"] = None if args.model_type == "xlm" else batch[2] # XLM don't use segment_ids
example_indices = batch[3]
if args.model_type in ["xlnet", "xlm"]:
inputs.update({"cls_index": batch[4], "p_mask": batch[5]})
outputs = model(**inputs)
for i, example_index in enumerate(example_indices):
eval_feature = features[example_index.item()]
unique_id = int(eval_feature.unique_id)
output = [to_list(output[i]) for output in outputs]
# Some models (XLNet, XLM) use 5 arguments for their predictions, while the other "simpler"
# models only use two.
if len(output) >= 5:
start_logits = output[0]
start_top_index = output[1]
end_logits = output[2]
end_top_index = output[3]
cls_logits = output[4]
result = SquadResult(
unique_id,
start_logits,
end_logits,
start_top_index=start_top_index,
end_top_index=end_top_index,
cls_logits=cls_logits,
)
else:
start_logits, end_logits = output
result = SquadResult(unique_id, start_logits, end_logits)
all_results.append(result)
evalTime = timeit.default_timer() - start_time
logger.info(" Evaluation done in total %f secs (%f sec per example)", evalTime, evalTime / len(dataset))
# Compute predictions
output_prediction_file = os.path.join(args.output_dir, "predictions_{}.json".format(prefix))
output_nbest_file = os.path.join(args.output_dir, "nbest_predictions_{}.json".format(prefix))
if args.version_2_with_negative:
output_null_log_odds_file = os.path.join(args.output_dir, "null_odds_{}.json".format(prefix))
else:
output_null_log_odds_file = None
if args.model_type in ["xlnet", "xlm"]:
# XLNet uses a more complex post-processing procedure
predictions = compute_predictions_log_probs(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
model.config.start_n_top,
model.config.end_n_top,
args.version_2_with_negative,
tokenizer,
args.verbose_logging,
)
else:
predictions = compute_predictions_logits(
examples,
features,
all_results,
args.n_best_size,
args.max_answer_length,
args.do_lower_case,
output_prediction_file,
output_nbest_file,
output_null_log_odds_file,
args.verbose_logging,
args.version_2_with_negative,
args.null_score_diff_threshold,
tokenizer,
)
# Compute the F1 and exact scores.
results = squad_evaluate(examples, predictions)
return results
def load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False):
if args.local_rank not in [-1, 0] and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
# Load data features from cache or dataset file
input_file = args.predict_file if evaluate else args.train_file
cached_features_file = os.path.join(
os.path.dirname(input_file),
"cached_distillation_{}_{}_{}".format(
"dev" if evaluate else "train",
list(filter(None, args.model_name_or_path.split("/"))).pop(),
str(args.max_seq_length),
),
)
if os.path.exists(cached_features_file) and not args.overwrite_cache:
logger.info("Loading features from cached file %s", cached_features_file)
features_and_dataset = torch.load(cached_features_file)
try:
features, dataset, examples = (
features_and_dataset["features"],
features_and_dataset["dataset"],
features_and_dataset["examples"],
)
except KeyError:
raise DeprecationWarning(
"You seem to be loading features from an older version of this script please delete the "
"file %s in order for it to be created again" % cached_features_file
)
else:
logger.info("Creating features from dataset file at %s", input_file)
processor = SquadV2Processor() if args.version_2_with_negative else SquadV1Processor()
if evaluate:
examples = processor.get_dev_examples(args.data_dir, filename=args.predict_file)
else:
examples = processor.get_train_examples(args.data_dir, filename=args.train_file)
features, dataset = squad_convert_examples_to_features(
examples=examples,
tokenizer=tokenizer,
max_seq_length=args.max_seq_length,
doc_stride=args.doc_stride,
max_query_length=args.max_query_length,
is_training=not evaluate,
return_dataset="pt",
threads=args.threads,
)
if args.local_rank in [-1, 0]:
logger.info("Saving features into cached file %s", cached_features_file)
torch.save({"features": features, "dataset": dataset, "examples": examples}, cached_features_file)
if args.local_rank == 0 and not evaluate:
# Make sure only the first process in distributed training process the dataset, and the others will use the cache
torch.distributed.barrier()
if output_examples:
return dataset, examples, features
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--model_type",
default=None,
type=str,
required=True,
help="Model type selected in the list: " + ", ".join(MODEL_CLASSES.keys()),
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model checkpoints and predictions will be written.",
)
# Distillation parameters (optional)
parser.add_argument(
"--teacher_type",
default=None,
type=str,
help=(
"Teacher type. Teacher tokenizer and student (model) tokenizer must output the same tokenization. Only for"
" distillation."
),
)
parser.add_argument(
"--teacher_name_or_path",
default=None,
type=str,
help="Path to the already SQuAD fine-tuned teacher model. Only for distillation.",
)
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Distillation loss linear weight. Only for distillation."
)
parser.add_argument(
"--alpha_squad", default=0.5, type=float, help="True SQuAD loss linear weight. Only for distillation."
)
parser.add_argument(
"--temperature", default=2.0, type=float, help="Distillation temperature. Only for distillation."
)
# Other parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
help="The input data dir. Should contain the .json files for the task."
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--train_file",
default=None,
type=str,
help="The input training file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--predict_file",
default=None,
type=str,
help="The input evaluation file. If a data dir is specified, will look for the file there"
+ "If no data dir or train/predict files are specified, will run with tensorflow_datasets.",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--version_2_with_negative",
action="store_true",
help="If true, the SQuAD examples contain some that do not have an answer.",
)
parser.add_argument(
"--null_score_diff_threshold",
type=float,
default=0.0,
help="If null_score - best_non_null is greater than the threshold predict null.",
)
parser.add_argument(
"--max_seq_length",
default=384,
type=int,
help=(
"The maximum total input sequence length after WordPiece tokenization. Sequences "
"longer than this will be truncated, and sequences shorter than this will be padded."
),
)
parser.add_argument(
"--doc_stride",
default=128,
type=int,
help="When splitting up a long document into chunks, how much stride to take between chunks.",
)
parser.add_argument(
"--max_query_length",
default=64,
type=int,
help=(
"The maximum number of tokens for the question. Questions longer than this will "
"be truncated to this length."
),
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument(
"--n_best_size",
default=20,
type=int,
help="The total number of n-best predictions to generate in the nbest_predictions.json output file.",
)
parser.add_argument(
"--max_answer_length",
default=30,
type=int,
help=(
"The maximum length of an answer that can be generated. This is needed because the start "
"and end predictions are not conditioned on one another."
),
)
parser.add_argument(
"--verbose_logging",
action="store_true",
help=(
"If true, all of the warnings related to data processing will be printed. "
"A number of warnings are expected for a normal SQuAD evaluation."
),
)
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Whether not to use CUDA when available")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument("--local_rank", type=int, default=-1, help="local_rank for distributed training on gpus")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--server_ip", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="Can be used for distant debugging.")
parser.add_argument("--threads", type=int, default=1, help="multiple threads for converting example to features")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
args.model_type = args.model_type.lower()
config_class, model_class, tokenizer_class = MODEL_CLASSES[args.model_type]
config = config_class.from_pretrained(
args.config_name if args.config_name else args.model_name_or_path,
cache_dir=args.cache_dir if args.cache_dir else None,
)
tokenizer = tokenizer_class.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir if args.cache_dir else None,
)
model = model_class.from_pretrained(
args.model_name_or_path,
from_tf=bool(".ckpt" in args.model_name_or_path),
config=config,
cache_dir=args.cache_dir if args.cache_dir else None,
)
if args.teacher_type is not None:
assert args.teacher_name_or_path is not None
assert args.alpha_ce > 0.0
assert args.alpha_ce + args.alpha_squad > 0.0
assert args.teacher_type != "distilbert", "We constraint teachers not to be of type DistilBERT."
teacher_config_class, teacher_model_class, _ = MODEL_CLASSES[args.teacher_type]
teacher_config = teacher_config_class.from_pretrained(
args.teacher_name_or_path, cache_dir=args.cache_dir if args.cache_dir else None
)
teacher = teacher_model_class.from_pretrained(
args.teacher_name_or_path, config=teacher_config, cache_dir=args.cache_dir if args.cache_dir else None
)
teacher.to(args.device)
else:
teacher = None
if args.local_rank == 0:
# Make sure only the first process in distributed training will download model & vocab
torch.distributed.barrier()
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Before we do anything with models, we want to ensure that we get fp16 execution of torch.einsum if args.fp16 is set.
# Otherwise it'll default to "promote" mode, and we'll get fp32 operations. Note that running `--fp16_opt_level="O2"` will
# remove the need for this code, but it is still valid.
if args.fp16:
try:
import apex
apex.amp.register_half_function(torch, "einsum")
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
# Training
if args.do_train:
train_dataset = load_and_cache_examples(args, tokenizer, evaluate=False, output_examples=False)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, teacher=teacher)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Save the trained model and the tokenizer
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
model_to_save.save_pretrained(args.output_dir)
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = model_class.from_pretrained(args.output_dir)
tokenizer = tokenizer_class.from_pretrained(args.output_dir, do_lower_case=args.do_lower_case)
model.to(args.device)
# Evaluation - we can ask to evaluate all the checkpoints (sub-directories) in a directory
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
if args.do_train:
logger.info("Loading checkpoints saved during training for evaluation")
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
# Reload the model
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
model = model_class.from_pretrained(checkpoint)
model.to(args.device)
# Evaluate
result = evaluate(args, model, tokenizer, prefix=global_step)
result = {k + ("_{}".format(global_step) if global_step else ""): v for k, v in result.items()}
results.update(result)
logger.info("Results: {}".format(results))
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/requirements.txt | transformers
gitpython==3.1.32
tensorboard>=1.14.0
tensorboardX==1.8
psutil==5.6.6
scipy>=1.4.1
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/lm_seqs_dataset.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Dataset to distilled models
adapted in part from Facebook, Inc XLM model (https://github.com/facebookresearch/XLM)
"""
import numpy as np
import torch
from torch.utils.data import Dataset
from utils import logger
class LmSeqsDataset(Dataset):
"""Custom Dataset wrapping language modeling sequences.
Each sample will be retrieved by indexing the list of token_ids and their corresponding lengths.
Input:
------
params: `NameSpace` parameters
data: `List[np.array[int]]
"""
def __init__(self, params, data):
self.params = params
self.token_ids = np.array(data)
self.lengths = np.array([len(t) for t in data])
self.check()
self.remove_long_sequences()
self.remove_empty_sequences()
self.remove_unknown_sequences()
self.check()
self.print_statistics()
def __getitem__(self, index):
return (self.token_ids[index], self.lengths[index])
def __len__(self):
return len(self.lengths)
def check(self):
"""
Some sanity checks
"""
assert len(self.token_ids) == len(self.lengths)
assert all(self.lengths[i] == len(self.token_ids[i]) for i in range(len(self.lengths)))
def remove_long_sequences(self):
"""
Sequences that are too long are split by chunk of max_model_input_size.
"""
max_len = self.params.max_model_input_size
indices = self.lengths > max_len
logger.info(f"Splitting {sum(indices)} too long sequences.")
def divide_chunks(l, n):
return [l[i : i + n] for i in range(0, len(l), n)]
new_tok_ids = []
new_lengths = []
if self.params.mlm:
cls_id, sep_id = self.params.special_tok_ids["cls_token"], self.params.special_tok_ids["sep_token"]
else:
cls_id, sep_id = self.params.special_tok_ids["bos_token"], self.params.special_tok_ids["eos_token"]
for seq_, len_ in zip(self.token_ids, self.lengths):
assert (seq_[0] == cls_id) and (seq_[-1] == sep_id), seq_
if len_ <= max_len:
new_tok_ids.append(seq_)
new_lengths.append(len_)
else:
sub_seqs = []
for sub_s in divide_chunks(seq_, max_len - 2):
if sub_s[0] != cls_id:
sub_s = np.insert(sub_s, 0, cls_id)
if sub_s[-1] != sep_id:
sub_s = np.insert(sub_s, len(sub_s), sep_id)
assert len(sub_s) <= max_len
assert (sub_s[0] == cls_id) and (sub_s[-1] == sep_id), sub_s
sub_seqs.append(sub_s)
new_tok_ids.extend(sub_seqs)
new_lengths.extend([len(l) for l in sub_seqs])
self.token_ids = np.array(new_tok_ids)
self.lengths = np.array(new_lengths)
def remove_empty_sequences(self):
"""
Too short sequences are simply removed. This could be tuned.
"""
init_size = len(self)
indices = self.lengths > 11
self.token_ids = self.token_ids[indices]
self.lengths = self.lengths[indices]
new_size = len(self)
logger.info(f"Remove {init_size - new_size} too short (<=11 tokens) sequences.")
def remove_unknown_sequences(self):
"""
Remove sequences with a (too) high level of unknown tokens.
"""
if "unk_token" not in self.params.special_tok_ids:
return
else:
unk_token_id = self.params.special_tok_ids["unk_token"]
init_size = len(self)
unk_occs = np.array([np.count_nonzero(a == unk_token_id) for a in self.token_ids])
indices = (unk_occs / self.lengths) < 0.5
self.token_ids = self.token_ids[indices]
self.lengths = self.lengths[indices]
new_size = len(self)
logger.info(f"Remove {init_size - new_size} sequences with a high level of unknown tokens (50%).")
def print_statistics(self):
"""
Print some statistics on the corpus. Only the master process.
"""
if not self.params.is_master:
return
logger.info(f"{len(self)} sequences")
# data_len = sum(self.lengths)
# nb_unique_tokens = len(Counter(list(chain(*self.token_ids))))
# logger.info(f'{data_len} tokens ({nb_unique_tokens} unique)')
# unk_idx = self.params.special_tok_ids['unk_token']
# nb_unknown = sum([(t==unk_idx).sum() for t in self.token_ids])
# logger.info(f'{nb_unknown} unknown tokens (covering {100*nb_unknown/data_len:.2f}% of the data)')
def batch_sequences(self, batch):
"""
Do the padding and transform into torch.tensor.
"""
token_ids = [t[0] for t in batch]
lengths = [t[1] for t in batch]
assert len(token_ids) == len(lengths)
# Max for paddings
max_seq_len_ = max(lengths)
# Pad token ids
if self.params.mlm:
pad_idx = self.params.special_tok_ids["pad_token"]
else:
pad_idx = self.params.special_tok_ids["unk_token"]
tk_ = [list(t.astype(int)) + [pad_idx] * (max_seq_len_ - len(t)) for t in token_ids]
assert len(tk_) == len(token_ids)
assert all(len(t) == max_seq_len_ for t in tk_)
tk_t = torch.tensor(tk_) # (bs, max_seq_len_)
lg_t = torch.tensor(lengths) # (bs)
return tk_t, lg_t
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/grouped_batch_sampler.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Adapted from PyTorch Vision (https://github.com/pytorch/vision/blob/master/references/detection/group_by_aspect_ratio.py)
"""
import bisect
import copy
from collections import defaultdict
import numpy as np
from torch.utils.data import BatchSampler, Sampler
from utils import logger
def _quantize(x, bins):
bins = copy.deepcopy(bins)
bins = sorted(bins)
quantized = [bisect.bisect_right(bins, y) for y in x]
return quantized
def create_lengths_groups(lengths, k=0):
bins = np.arange(start=3, stop=k, step=4).tolist() if k > 0 else [10]
groups = _quantize(lengths, bins)
# count number of elements per group
counts = np.unique(groups, return_counts=True)[1]
fbins = [0] + bins + [np.inf]
logger.info("Using {} as bins for aspect lengths quantization".format(fbins))
logger.info("Count of instances per bin: {}".format(counts))
return groups
class GroupedBatchSampler(BatchSampler):
"""
Wraps another sampler to yield a mini-batch of indices.
It enforces that the batch only contain elements from the same group.
It also tries to provide mini-batches which follows an ordering which is
as close as possible to the ordering from the original sampler.
Arguments:
sampler (Sampler): Base sampler.
group_ids (list[int]): If the sampler produces indices in range [0, N),
`group_ids` must be a list of `N` ints which contains the group id of each sample.
The group ids must be a continuous set of integers starting from
0, i.e. they must be in the range [0, num_groups).
batch_size (int): Size of mini-batch.
"""
def __init__(self, sampler, group_ids, batch_size):
if not isinstance(sampler, Sampler):
raise ValueError(
"sampler should be an instance of torch.utils.data.Sampler, but got sampler={}".format(sampler)
)
self.sampler = sampler
self.group_ids = group_ids
self.batch_size = batch_size
def __iter__(self):
buffer_per_group = defaultdict(list)
samples_per_group = defaultdict(list)
num_batches = 0
for idx in self.sampler:
group_id = self.group_ids[idx]
buffer_per_group[group_id].append(idx)
samples_per_group[group_id].append(idx)
if len(buffer_per_group[group_id]) == self.batch_size:
yield buffer_per_group[group_id] # TODO
num_batches += 1
del buffer_per_group[group_id]
assert len(buffer_per_group[group_id]) < self.batch_size
# now we have run out of elements that satisfy
# the group criteria, let's return the remaining
# elements so that the size of the sampler is
# deterministic
expected_num_batches = len(self)
num_remaining = expected_num_batches - num_batches
if num_remaining > 0:
# for the remaining batches, group the batches by similar lengths
batch_idx = []
for group_id, idxs in sorted(buffer_per_group.items(), key=lambda x: x[0]):
batch_idx.extend(idxs)
if len(batch_idx) >= self.batch_size:
yield batch_idx[: self.batch_size]
batch_idx = batch_idx[self.batch_size :]
num_remaining -= 1
if len(batch_idx) > 0:
yield batch_idx
num_remaining -= 1
assert num_remaining == 0
def __len__(self):
"""
Return the number of mini-batches rather than the number of samples.
"""
return (len(self.sampler) + self.batch_size - 1) // self.batch_size
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/README.md | # Distil*
Author: @VictorSanh
This folder contains the original code used to train Distil* as well as examples showcasing how to use DistilBERT, DistilRoBERTa and DistilGPT2.
**January 20, 2020 - Bug fixing** We have recently discovered and fixed [a bug](https://github.com/huggingface/transformers/commit/48cbf267c988b56c71a2380f748a3e6092ccaed3) in the evaluation of our `run_*.py` scripts that caused the reported metrics to be over-estimated on average. We have updated all the metrics with the latest runs.
**December 6, 2019 - Update** We release **DistilmBERT**: 92% of `bert-base-multilingual-cased` on XNLI. The model supports 104 different languages listed [here](https://github.com/google-research/bert/blob/master/multilingual.md#list-of-languages).
**November 19, 2019 - Update** We release German **DistilBERT**: 98.8% of `bert-base-german-dbmdz-cased` on NER tasks.
**October 23, 2019 - Update** We release **DistilRoBERTa**: 95% of `RoBERTa-base`'s performance on GLUE, twice as fast as RoBERTa while being 35% smaller.
**October 3, 2019 - Update** We release our [NeurIPS workshop paper](https://arxiv.org/abs/1910.01108) explaining our approach on **DistilBERT**. It includes updated results and further experiments. We applied the same method to GPT2 and release the weights of **DistilGPT2**. DistilGPT2 is two times faster and 33% smaller than GPT2. **The paper supersedes our [previous blogpost](https://medium.com/huggingface/distilbert-8cf3380435b5) with a different distillation loss and better performances. Please use the paper as a reference when comparing/reporting results on DistilBERT.**
**September 19, 2019 - Update:** We fixed bugs in the code and released an updated version of the weights trained with a modification of the distillation loss. DistilBERT now reaches 99% of `BERT-base`'s performance on GLUE, and 86.9 F1 score on SQuAD v1.1 dev set (compared to 88.5 for `BERT-base`). We will publish a formal write-up of our approach in the near future!
## What is Distil*
Distil* is a class of compressed models that started with DistilBERT. DistilBERT stands for Distilled-BERT. DistilBERT is a small, fast, cheap and light Transformer model based on Bert architecture. It has 40% less parameters than `bert-base-uncased`, runs 60% faster while preserving 97% of BERT's performances as measured on the GLUE language understanding benchmark. DistilBERT is trained using knowledge distillation, a technique to compress a large model called the teacher into a smaller model called the student. By distillating Bert, we obtain a smaller Transformer model that bears a lot of similarities with the original BERT model while being lighter, smaller and faster to run. DistilBERT is thus an interesting option to put large-scaled trained Transformer model into production.
We have applied the same method to other Transformer architectures and released the weights:
- GPT2: on the [WikiText-103](https://blog.einstein.ai/the-wikitext-long-term-dependency-language-modeling-dataset/) benchmark, GPT2 reaches a perplexity on the test set of 16.3 compared to 21.1 for **DistilGPT2** (after fine-tuning on the train set).
- RoBERTa: **DistilRoBERTa** reaches 95% of `RoBERTa-base`'s performance on GLUE while being twice faster and 35% smaller.
- German BERT: **German DistilBERT** reaches 99% of `bert-base-german-dbmdz-cased`'s performance on German NER (CoNLL-2003).
- Multilingual BERT: **DistilmBERT** reaches 92% of Multilingual BERT's performance on XNLI while being twice faster and 25% smaller. The model supports 104 languages listed [here](https://github.com/google-research/bert/blob/master/multilingual.md#list-of-languages).
For more information on DistilBERT, please refer to our [NeurIPS workshop paper](https://arxiv.org/abs/1910.01108).
Here are the results on the dev sets of GLUE:
| Model | Macro-score | CoLA | MNLI | MRPC | QNLI | QQP | RTE | SST-2| STS-B| WNLI |
| :---: | :---: | :---:| :---:| :---:| :---:| :---:| :---:| :---:| :---:| :---: |
| BERT-base-uncased | **79.5** | 56.3 | 84.7 | 88.6 | 91.8 | 89.6 | 69.3 | 92.7 | 89.0 | 53.5 |
| DistilBERT-base-uncased | **77.0** | 51.3 | 82.1 | 87.5 | 89.2 | 88.5 | 59.9 | 91.3 | 86.9 | 56.3 |
| BERT-base-cased | **78.2** | 58.2 | 83.9 | 87.8 | 91.0 | 89.2 | 66.1 | 91.7 | 89.2 | 46.5 |
| DistilBERT-base-cased | **75.9** | 47.2 | 81.5 | 85.6 | 88.2 | 87.8 | 60.6 | 90.4 | 85.5 | 56.3 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
| RoBERTa-base (reported) | **83.2**/**86.4**<sup>2</sup> | 63.6 | 87.6 | 90.2 | 92.8 | 91.9 | 78.7 | 94.8 | 91.2 | 57.7<sup>3</sup> |
| DistilRoBERTa<sup>1</sup> | **79.0**/**82.3**<sup>2</sup> | 59.3 | 84.0 | 86.6 | 90.8 | 89.4 | 67.9 | 92.5 | 88.3 | 52.1 |
<sup>1</sup> We did not use the MNLI checkpoint for fine-tuning but directly perform transfer learning on the pre-trained DistilRoBERTa.
<sup>2</sup> Macro-score computed without WNLI.
<sup>3</sup> We compute this score ourselves for completeness.
Here are the results on the *test* sets for 6 of the languages available in XNLI. The results are computed in the zero shot setting (trained on the English portion and evaluated on the target language portion):
| Model | English | Spanish | Chinese | German | Arabic | Urdu |
| :---: | :---: | :---: | :---: | :---: | :---: | :---:|
| mBERT base cased (computed) | 82.1 | 74.6 | 69.1 | 72.3 | 66.4 | 58.5 |
| mBERT base uncased (reported)| 81.4 | 74.3 | 63.8 | 70.5 | 62.1 | 58.3 |
| DistilmBERT | 78.2 | 69.1 | 64.0 | 66.3 | 59.1 | 54.7 |
## Setup
This part of the library has only be tested with Python3.6+. There are few specific dependencies to install before launching a distillation, you can install them with the command `pip install -r requirements.txt`.
**Important note:** The training scripts have been updated to support PyTorch v1.2.0 (there are breaking changes compared to v1.1.0).
## How to use DistilBERT
Transformers includes five pre-trained Distil* models, currently only provided for English and German (we are investigating the possibility to train and release a multilingual version of DistilBERT):
- `distilbert-base-uncased`: DistilBERT English language model pretrained on the same data used to pretrain Bert (concatenation of the Toronto Book Corpus and full English Wikipedia) using distillation with the supervision of the `bert-base-uncased` version of Bert. The model has 6 layers, 768 dimension and 12 heads, totalizing 66M parameters.
- `distilbert-base-uncased-distilled-squad`: A finetuned version of `distilbert-base-uncased` finetuned using (a second step of) knowledge distillation on SQuAD 1.0. This model reaches a F1 score of 86.9 on the dev set (for comparison, Bert `bert-base-uncased` version reaches a 88.5 F1 score).
- `distilbert-base-cased`: DistilBERT English language model pretrained on the same data used to pretrain Bert (concatenation of the Toronto Book Corpus and full English Wikipedia) using distillation with the supervision of the `bert-base-cased` version of Bert. The model has 6 layers, 768 dimension and 12 heads, totalizing 65M parameters.
- `distilbert-base-cased-distilled-squad`: A finetuned version of `distilbert-base-cased` finetuned using (a second step of) knowledge distillation on SQuAD 1.0. This model reaches a F1 score of 87.1 on the dev set (for comparison, Bert `bert-base-cased` version reaches a 88.7 F1 score).
- `distilbert-base-german-cased`: DistilBERT German language model pretrained on 1/2 of the data used to pretrain Bert using distillation with the supervision of the `bert-base-german-dbmdz-cased` version of German DBMDZ Bert. For NER tasks the model reaches a F1 score of 83.49 on the CoNLL-2003 test set (for comparison, `bert-base-german-dbmdz-cased` reaches a 84.52 F1 score), and a F1 score of 85.23 on the GermEval 2014 test set (`bert-base-german-dbmdz-cased` reaches a 86.89 F1 score).
- `distilgpt2`: DistilGPT2 English language model pretrained with the supervision of `gpt2` (the smallest version of GPT2) on [OpenWebTextCorpus](https://skylion007.github.io/OpenWebTextCorpus/), a reproduction of OpenAI's WebText dataset. The model has 6 layers, 768 dimension and 12 heads, totalizing 82M parameters (compared to 124M parameters for GPT2). On average, DistilGPT2 is two times faster than GPT2.
- `distilroberta-base`: DistilRoBERTa English language model pretrained with the supervision of `roberta-base` solely on [OpenWebTextCorpus](https://skylion007.github.io/OpenWebTextCorpus/), a reproduction of OpenAI's WebText dataset (it is ~4 times less training data than the teacher RoBERTa). The model has 6 layers, 768 dimension and 12 heads, totalizing 82M parameters (compared to 125M parameters for RoBERTa-base). On average DistilRoBERTa is twice as fast as Roberta-base.
- `distilbert-base-multilingual-cased`: DistilmBERT multilingual model pretrained with the supervision of `bert-base-multilingual-cased` on the concatenation of Wikipedia in 104 different languages. The model supports the 104 languages listed [here](https://github.com/google-research/bert/blob/master/multilingual.md#list-of-languages). The model has 6 layers, 768 dimension and 12 heads, totalizing 134M parameters (compared to 177M parameters for mBERT-base). On average DistilmBERT is twice as fast as mBERT-base.
Using DistilBERT is very similar to using BERT. DistilBERT share the same tokenizer as BERT's `bert-base-uncased` even though we provide a link to this tokenizer under the `DistilBertTokenizer` name to have a consistent naming between the library models.
```python
tokenizer = DistilBertTokenizer.from_pretrained('distilbert-base-cased')
model = DistilBertModel.from_pretrained('distilbert-base-cased')
input_ids = torch.tensor(tokenizer.encode("Hello, my dog is cute")).unsqueeze(0)
outputs = model(input_ids)
last_hidden_states = outputs[0] # The last hidden-state is the first element of the output tuple
```
Similarly, using the other Distil* models simply consists in calling the base classes with a different pretrained checkpoint:
- DistilBERT uncased: `model = DistilBertModel.from_pretrained('distilbert-base-uncased')`
- DistilGPT2: `model = GPT2Model.from_pretrained('distilgpt2')`
- DistilRoBERTa: `model = RobertaModel.from_pretrained('distilroberta-base')`
- DistilmBERT: `model = DistilBertModel.from_pretrained('distilbert-base-multilingual-cased')`
## How to train Distil*
In the following, we will explain how you can train DistilBERT.
### A. Preparing the data
The weights we release are trained using a concatenation of Toronto Book Corpus and English Wikipedia (same training data as the English version of BERT).
To avoid processing the data several time, we do it once and for all before the training. From now on, will suppose that you have a text file `dump.txt` which contains one sequence per line (a sequence being composed of one of several coherent sentences).
First, we will binarize the data, i.e. tokenize the data and convert each token in an index in our model's vocabulary.
```bash
python scripts/binarized_data.py \
--file_path data/dump.txt \
--tokenizer_type bert \
--tokenizer_name bert-base-uncased \
--dump_file data/binarized_text
```
Our implementation of masked language modeling loss follows [XLM](https://github.com/facebookresearch/XLM)'s one and smooths the probability of masking with a factor that put more emphasis on rare words. Thus we count the occurrences of each tokens in the data:
```bash
python scripts/token_counts.py \
--data_file data/binarized_text.bert-base-uncased.pickle \
--token_counts_dump data/token_counts.bert-base-uncased.pickle \
--vocab_size 30522
```
### B. Training
Training with distillation is really simple once you have pre-processed the data:
```bash
python train.py \
--student_type distilbert \
--student_config training_configs/distilbert-base-uncased.json \
--teacher_type bert \
--teacher_name bert-base-uncased \
--alpha_ce 5.0 --alpha_mlm 2.0 --alpha_cos 1.0 --alpha_clm 0.0 --mlm \
--freeze_pos_embs \
--dump_path serialization_dir/my_first_training \
--data_file data/binarized_text.bert-base-uncased.pickle \
--token_counts data/token_counts.bert-base-uncased.pickle \
--force # overwrites the `dump_path` if it already exists.
```
By default, this will launch a training on a single GPU (even if more are available on the cluster). Other parameters are available in the command line, please look in `train.py` or run `python train.py --help` to list them.
We highly encourage you to use distributed training for training DistilBERT as the training corpus is quite large. Here's an example that runs a distributed training on a single node having 4 GPUs:
```bash
export NODE_RANK=0
export N_NODES=1
export N_GPU_NODE=4
export WORLD_SIZE=4
export MASTER_PORT=<AN_OPEN_PORT>
export MASTER_ADDR=<I.P.>
pkill -f 'python -u train.py'
python -m torch.distributed.launch \
--nproc_per_node=$N_GPU_NODE \
--nnodes=$N_NODES \
--node_rank $NODE_RANK \
--master_addr $MASTER_ADDR \
--master_port $MASTER_PORT \
train.py \
--force \
--n_gpu $WORLD_SIZE \
--student_type distilbert \
--student_config training_configs/distilbert-base-uncased.json \
--teacher_type bert \
--teacher_name bert-base-uncased \
--alpha_ce 0.33 --alpha_mlm 0.33 --alpha_cos 0.33 --alpha_clm 0.0 --mlm \
--freeze_pos_embs \
--dump_path serialization_dir/my_first_training \
--data_file data/binarized_text.bert-base-uncased.pickle \
--token_counts data/token_counts.bert-base-uncased.pickle
```
**Tips:** Starting distilled training with good initialization of the model weights is crucial to reach decent performance. In our experiments, we initialized our model from a few layers of the teacher (Bert) itself! Please refer to `scripts/extract.py` and `scripts/extract_distilbert.py` to create a valid initialization checkpoint and use `--student_pretrained_weights` argument to use this initialization for the distilled training!
Happy distillation!
## Citation
If you find the resource useful, you should cite the following paper:
```
@inproceedings{sanh2019distilbert,
title={DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lighter},
author={Sanh, Victor and Debut, Lysandre and Chaumond, Julien and Wolf, Thomas},
booktitle={NeurIPS EMC^2 Workshop},
year={2019}
}
```
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/distiller.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" The distiller to distil the student.
Adapted in part from Facebook, Inc XLM model (https://github.com/facebookresearch/XLM)
"""
import math
import os
import time
import psutil
import torch
from grouped_batch_sampler import GroupedBatchSampler, create_lengths_groups
from lm_seqs_dataset import LmSeqsDataset
from torch import nn
from torch.optim import AdamW
from torch.utils.data import BatchSampler, DataLoader, RandomSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm
from transformers import get_linear_schedule_with_warmup
from utils import logger
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
class Distiller:
def __init__(
self, params: dict, dataset: LmSeqsDataset, token_probs: torch.tensor, student: nn.Module, teacher: nn.Module
):
logger.info("Initializing Distiller")
self.params = params
self.dump_path = params.dump_path
self.multi_gpu = params.multi_gpu
self.fp16 = params.fp16
self.student = student
self.teacher = teacher
self.student_config = student.config
self.vocab_size = student.config.vocab_size
if params.n_gpu <= 1:
sampler = RandomSampler(dataset)
else:
sampler = DistributedSampler(dataset)
if params.group_by_size:
groups = create_lengths_groups(lengths=dataset.lengths, k=params.max_model_input_size)
sampler = GroupedBatchSampler(sampler=sampler, group_ids=groups, batch_size=params.batch_size)
else:
sampler = BatchSampler(sampler=sampler, batch_size=params.batch_size, drop_last=False)
self.dataloader = DataLoader(dataset=dataset, batch_sampler=sampler, collate_fn=dataset.batch_sequences)
self.temperature = params.temperature
assert self.temperature > 0.0
self.alpha_ce = params.alpha_ce
self.alpha_mlm = params.alpha_mlm
self.alpha_clm = params.alpha_clm
self.alpha_mse = params.alpha_mse
self.alpha_cos = params.alpha_cos
self.mlm = params.mlm
if self.mlm:
logger.info("Using MLM loss for LM step.")
self.mlm_mask_prop = params.mlm_mask_prop
assert 0.0 <= self.mlm_mask_prop <= 1.0
assert params.word_mask + params.word_keep + params.word_rand == 1.0
self.pred_probs = torch.FloatTensor([params.word_mask, params.word_keep, params.word_rand])
self.pred_probs = self.pred_probs.to(f"cuda:{params.local_rank}") if params.n_gpu > 0 else self.pred_probs
self.token_probs = token_probs.to(f"cuda:{params.local_rank}") if params.n_gpu > 0 else token_probs
if self.fp16:
self.pred_probs = self.pred_probs.half()
self.token_probs = self.token_probs.half()
else:
logger.info("Using CLM loss for LM step.")
self.epoch = 0
self.n_iter = 0
self.n_total_iter = 0
self.n_sequences_epoch = 0
self.total_loss_epoch = 0
self.last_loss = 0
self.last_loss_ce = 0
self.last_loss_mlm = 0
self.last_loss_clm = 0
if self.alpha_mse > 0.0:
self.last_loss_mse = 0
if self.alpha_cos > 0.0:
self.last_loss_cos = 0
self.last_log = 0
self.ce_loss_fct = nn.KLDivLoss(reduction="batchmean")
self.lm_loss_fct = nn.CrossEntropyLoss(ignore_index=-100)
if self.alpha_mse > 0.0:
self.mse_loss_fct = nn.MSELoss(reduction="sum")
if self.alpha_cos > 0.0:
self.cosine_loss_fct = nn.CosineEmbeddingLoss(reduction="mean")
logger.info("--- Initializing model optimizer")
assert params.gradient_accumulation_steps >= 1
self.num_steps_epoch = len(self.dataloader)
num_train_optimization_steps = (
int(self.num_steps_epoch / params.gradient_accumulation_steps * params.n_epoch) + 1
)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [
p for n, p in student.named_parameters() if not any(nd in n for nd in no_decay) and p.requires_grad
],
"weight_decay": params.weight_decay,
},
{
"params": [
p for n, p in student.named_parameters() if any(nd in n for nd in no_decay) and p.requires_grad
],
"weight_decay": 0.0,
},
]
logger.info(
"------ Number of trainable parameters (student): %i"
% sum([p.numel() for p in self.student.parameters() if p.requires_grad])
)
logger.info("------ Number of parameters (student): %i" % sum([p.numel() for p in self.student.parameters()]))
self.optimizer = AdamW(
optimizer_grouped_parameters, lr=params.learning_rate, eps=params.adam_epsilon, betas=(0.9, 0.98)
)
warmup_steps = math.ceil(num_train_optimization_steps * params.warmup_prop)
self.scheduler = get_linear_schedule_with_warmup(
self.optimizer, num_warmup_steps=warmup_steps, num_training_steps=num_train_optimization_steps
)
if self.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
logger.info(f"Using fp16 training: {self.params.fp16_opt_level} level")
self.student, self.optimizer = amp.initialize(
self.student, self.optimizer, opt_level=self.params.fp16_opt_level
)
self.teacher = self.teacher.half()
if self.multi_gpu:
if self.fp16:
from apex.parallel import DistributedDataParallel
logger.info("Using apex.parallel.DistributedDataParallel for distributed training.")
self.student = DistributedDataParallel(self.student)
else:
from torch.nn.parallel import DistributedDataParallel
logger.info("Using nn.parallel.DistributedDataParallel for distributed training.")
self.student = DistributedDataParallel(
self.student,
device_ids=[params.local_rank],
output_device=params.local_rank,
find_unused_parameters=True,
)
self.is_master = params.is_master
if self.is_master:
logger.info("--- Initializing Tensorboard")
self.tensorboard = SummaryWriter(log_dir=os.path.join(self.dump_path, "log", "train"))
self.tensorboard.add_text(tag="config/training", text_string=str(self.params), global_step=0)
self.tensorboard.add_text(tag="config/student", text_string=str(self.student_config), global_step=0)
def prepare_batch_mlm(self, batch):
"""
Prepare the batch: from the token_ids and the lengths, compute the attention mask and the masked label for MLM.
Input:
------
batch: `Tuple`
token_ids: `torch.tensor(bs, seq_length)` - The token ids for each of the sequence. It is padded.
lengths: `torch.tensor(bs)` - The lengths of each of the sequences in the batch.
Output:
-------
token_ids: `torch.tensor(bs, seq_length)` - The token ids after the modifications for MLM.
attn_mask: `torch.tensor(bs, seq_length)` - The attention mask for the self-attention.
mlm_labels: `torch.tensor(bs, seq_length)` - The masked language modeling labels. There is a -100 where there is nothing to predict.
"""
token_ids, lengths = batch
token_ids, lengths = self.round_batch(x=token_ids, lengths=lengths)
assert token_ids.size(0) == lengths.size(0)
attn_mask = torch.arange(token_ids.size(1), dtype=torch.long, device=lengths.device) < lengths[:, None]
bs, max_seq_len = token_ids.size()
mlm_labels = token_ids.new(token_ids.size()).copy_(token_ids)
x_prob = self.token_probs[token_ids.flatten()]
n_tgt = math.ceil(self.mlm_mask_prop * lengths.sum().item())
tgt_ids = torch.multinomial(x_prob / x_prob.sum(), n_tgt, replacement=False)
pred_mask = torch.zeros(
bs * max_seq_len, dtype=torch.bool, device=token_ids.device
) # previously `dtype=torch.uint8`, cf pytorch 1.2.0 compatibility
pred_mask[tgt_ids] = 1
pred_mask = pred_mask.view(bs, max_seq_len)
pred_mask[token_ids == self.params.special_tok_ids["pad_token"]] = 0
# mask a number of words == 0 [8] (faster with fp16)
if self.fp16:
n1 = pred_mask.sum().item()
if n1 > 8:
pred_mask = pred_mask.view(-1)
n2 = max(n1 % 8, 8 * (n1 // 8))
if n2 != n1:
pred_mask[torch.nonzero(pred_mask).view(-1)[: n1 - n2]] = 0
pred_mask = pred_mask.view(bs, max_seq_len)
assert pred_mask.sum().item() % 8 == 0, pred_mask.sum().item()
_token_ids_real = token_ids[pred_mask]
_token_ids_rand = _token_ids_real.clone().random_(self.vocab_size)
_token_ids_mask = _token_ids_real.clone().fill_(self.params.special_tok_ids["mask_token"])
probs = torch.multinomial(self.pred_probs, len(_token_ids_real), replacement=True)
_token_ids = (
_token_ids_mask * (probs == 0).long()
+ _token_ids_real * (probs == 1).long()
+ _token_ids_rand * (probs == 2).long()
)
token_ids = token_ids.masked_scatter(pred_mask, _token_ids)
mlm_labels[~pred_mask] = -100 # previously `mlm_labels[1-pred_mask] = -1`, cf pytorch 1.2.0 compatibility
# sanity checks
assert 0 <= token_ids.min() <= token_ids.max() < self.vocab_size
return token_ids, attn_mask, mlm_labels
def prepare_batch_clm(self, batch):
"""
Prepare the batch: from the token_ids and the lengths, compute the attention mask and the labels for CLM.
Input:
------
batch: `Tuple`
token_ids: `torch.tensor(bs, seq_length)` - The token ids for each of the sequence. It is padded.
lengths: `torch.tensor(bs)` - The lengths of each of the sequences in the batch.
Output:
-------
token_ids: `torch.tensor(bs, seq_length)` - The token ids after the modifications for MLM.
attn_mask: `torch.tensor(bs, seq_length)` - The attention mask for the self-attention.
clm_labels: `torch.tensor(bs, seq_length)` - The causal language modeling labels. There is a -100 where there is nothing to predict.
"""
token_ids, lengths = batch
token_ids, lengths = self.round_batch(x=token_ids, lengths=lengths)
assert token_ids.size(0) == lengths.size(0)
attn_mask = torch.arange(token_ids.size(1), dtype=torch.long, device=lengths.device) < lengths[:, None]
clm_labels = token_ids.new(token_ids.size()).copy_(token_ids)
clm_labels[~attn_mask] = -100 # previously `clm_labels[1-attn_mask] = -1`, cf pytorch 1.2.0 compatibility
# sanity checks
assert 0 <= token_ids.min() <= token_ids.max() < self.vocab_size
return token_ids, attn_mask, clm_labels
def round_batch(self, x: torch.tensor, lengths: torch.tensor):
"""
For float16 only.
Sub-sample sentences in a batch, and add padding, so that each dimension is a multiple of 8.
Input:
------
x: `torch.tensor(bs, seq_length)` - The token ids.
lengths: `torch.tensor(bs, seq_length)` - The lengths of each of the sequence in the batch.
Output:
-------
x: `torch.tensor(new_bs, new_seq_length)` - The updated token ids.
lengths: `torch.tensor(new_bs, new_seq_length)` - The updated lengths.
"""
if not self.fp16 or len(lengths) < 8:
return x, lengths
# number of sentences == 0 [8]
bs1 = len(lengths)
bs2 = 8 * (bs1 // 8)
assert bs2 > 0 and bs2 % 8 == 0
if bs1 != bs2:
idx = torch.randperm(bs1)[:bs2]
lengths = lengths[idx]
slen = lengths.max().item()
x = x[idx, :slen]
else:
idx = None
# sequence length == 0 [8]
ml1 = x.size(1)
if ml1 % 8 != 0:
pad = 8 - (ml1 % 8)
ml2 = ml1 + pad
if self.mlm:
pad_id = self.params.special_tok_ids["pad_token"]
else:
pad_id = self.params.special_tok_ids["unk_token"]
padding_tensor = torch.zeros(bs2, pad, dtype=torch.long, device=x.device).fill_(pad_id)
x = torch.cat([x, padding_tensor], 1)
assert x.size() == (bs2, ml2)
assert x.size(0) % 8 == 0
assert x.size(1) % 8 == 0
return x, lengths
def train(self):
"""
The real training loop.
"""
if self.is_master:
logger.info("Starting training")
self.last_log = time.time()
self.student.train()
self.teacher.eval()
for _ in range(self.params.n_epoch):
if self.is_master:
logger.info(f"--- Starting epoch {self.epoch}/{self.params.n_epoch-1}")
if self.multi_gpu:
torch.distributed.barrier()
iter_bar = tqdm(self.dataloader, desc="-Iter", disable=self.params.local_rank not in [-1, 0])
for batch in iter_bar:
if self.params.n_gpu > 0:
batch = tuple(t.to(f"cuda:{self.params.local_rank}") for t in batch)
if self.mlm:
token_ids, attn_mask, lm_labels = self.prepare_batch_mlm(batch=batch)
else:
token_ids, attn_mask, lm_labels = self.prepare_batch_clm(batch=batch)
self.step(input_ids=token_ids, attention_mask=attn_mask, lm_labels=lm_labels)
iter_bar.update()
iter_bar.set_postfix(
{"Last_loss": f"{self.last_loss:.2f}", "Avg_cum_loss": f"{self.total_loss_epoch/self.n_iter:.2f}"}
)
iter_bar.close()
if self.is_master:
logger.info(f"--- Ending epoch {self.epoch}/{self.params.n_epoch-1}")
self.end_epoch()
if self.is_master:
logger.info("Save very last checkpoint as `pytorch_model.bin`.")
self.save_checkpoint(checkpoint_name="pytorch_model.bin")
logger.info("Training is finished")
def step(self, input_ids: torch.tensor, attention_mask: torch.tensor, lm_labels: torch.tensor):
"""
One optimization step: forward of student AND teacher, backward on the loss (for gradient accumulation),
and possibly a parameter update (depending on the gradient accumulation).
Input:
------
input_ids: `torch.tensor(bs, seq_length)` - The token ids.
attention_mask: `torch.tensor(bs, seq_length)` - The attention mask for self attention.
lm_labels: `torch.tensor(bs, seq_length)` - The language modeling labels (mlm labels for MLM and clm labels for CLM).
"""
if self.mlm:
student_outputs = self.student(
input_ids=input_ids, attention_mask=attention_mask
) # (bs, seq_length, voc_size)
with torch.no_grad():
teacher_outputs = self.teacher(
input_ids=input_ids, attention_mask=attention_mask
) # (bs, seq_length, voc_size)
else:
student_outputs = self.student(input_ids=input_ids, attention_mask=None) # (bs, seq_length, voc_size)
with torch.no_grad():
teacher_outputs = self.teacher(input_ids=input_ids, attention_mask=None) # (bs, seq_length, voc_size)
s_logits, s_hidden_states = student_outputs["logits"], student_outputs["hidden_states"]
t_logits, t_hidden_states = teacher_outputs["logits"], teacher_outputs["hidden_states"]
assert s_logits.size() == t_logits.size()
# https://github.com/peterliht/knowledge-distillation-pytorch/blob/master/model/net.py#L100
# https://github.com/peterliht/knowledge-distillation-pytorch/issues/2
if self.params.restrict_ce_to_mask:
mask = (lm_labels > -1).unsqueeze(-1).expand_as(s_logits) # (bs, seq_length, voc_size)
else:
mask = attention_mask.unsqueeze(-1).expand_as(s_logits) # (bs, seq_length, voc_size)
s_logits_slct = torch.masked_select(s_logits, mask) # (bs * seq_length * voc_size) modulo the 1s in mask
s_logits_slct = s_logits_slct.view(-1, s_logits.size(-1)) # (bs * seq_length, voc_size) modulo the 1s in mask
t_logits_slct = torch.masked_select(t_logits, mask) # (bs * seq_length * voc_size) modulo the 1s in mask
t_logits_slct = t_logits_slct.view(-1, s_logits.size(-1)) # (bs * seq_length, voc_size) modulo the 1s in mask
assert t_logits_slct.size() == s_logits_slct.size()
loss_ce = (
self.ce_loss_fct(
nn.functional.log_softmax(s_logits_slct / self.temperature, dim=-1),
nn.functional.softmax(t_logits_slct / self.temperature, dim=-1),
)
* (self.temperature) ** 2
)
loss = self.alpha_ce * loss_ce
if self.alpha_mlm > 0.0:
loss_mlm = self.lm_loss_fct(s_logits.view(-1, s_logits.size(-1)), lm_labels.view(-1))
loss += self.alpha_mlm * loss_mlm
if self.alpha_clm > 0.0:
shift_logits = s_logits[..., :-1, :].contiguous()
shift_labels = lm_labels[..., 1:].contiguous()
loss_clm = self.lm_loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
loss += self.alpha_clm * loss_clm
if self.alpha_mse > 0.0:
loss_mse = self.mse_loss_fct(s_logits_slct, t_logits_slct) / s_logits_slct.size(
0
) # Reproducing batchmean reduction
loss += self.alpha_mse * loss_mse
if self.alpha_cos > 0.0:
s_hidden_states = s_hidden_states[-1] # (bs, seq_length, dim)
t_hidden_states = t_hidden_states[-1] # (bs, seq_length, dim)
mask = attention_mask.unsqueeze(-1).expand_as(s_hidden_states) # (bs, seq_length, dim)
assert s_hidden_states.size() == t_hidden_states.size()
dim = s_hidden_states.size(-1)
s_hidden_states_slct = torch.masked_select(s_hidden_states, mask) # (bs * seq_length * dim)
s_hidden_states_slct = s_hidden_states_slct.view(-1, dim) # (bs * seq_length, dim)
t_hidden_states_slct = torch.masked_select(t_hidden_states, mask) # (bs * seq_length * dim)
t_hidden_states_slct = t_hidden_states_slct.view(-1, dim) # (bs * seq_length, dim)
target = s_hidden_states_slct.new(s_hidden_states_slct.size(0)).fill_(1) # (bs * seq_length,)
loss_cos = self.cosine_loss_fct(s_hidden_states_slct, t_hidden_states_slct, target)
loss += self.alpha_cos * loss_cos
self.total_loss_epoch += loss.item()
self.last_loss = loss.item()
self.last_loss_ce = loss_ce.item()
if self.alpha_mlm > 0.0:
self.last_loss_mlm = loss_mlm.item()
if self.alpha_clm > 0.0:
self.last_loss_clm = loss_clm.item()
if self.alpha_mse > 0.0:
self.last_loss_mse = loss_mse.item()
if self.alpha_cos > 0.0:
self.last_loss_cos = loss_cos.item()
self.optimize(loss)
self.n_sequences_epoch += input_ids.size(0)
def optimize(self, loss):
"""
Normalization on the loss (gradient accumulation or distributed training), followed by
backward pass on the loss, possibly followed by a parameter update (depending on the gradient accumulation).
Also update the metrics for tensorboard.
"""
# Check for NaN
if (loss != loss).data.any():
logger.error("NaN detected")
exit()
if self.multi_gpu:
loss = loss.mean()
if self.params.gradient_accumulation_steps > 1:
loss = loss / self.params.gradient_accumulation_steps
if self.fp16:
from apex import amp
with amp.scale_loss(loss, self.optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
self.iter()
if self.n_iter % self.params.gradient_accumulation_steps == 0:
if self.fp16:
nn.utils.clip_grad_norm_(amp.master_params(self.optimizer), self.params.max_grad_norm)
else:
nn.utils.clip_grad_norm_(self.student.parameters(), self.params.max_grad_norm)
self.optimizer.step()
self.optimizer.zero_grad()
self.scheduler.step()
def iter(self):
"""
Update global counts, write to tensorboard and save checkpoint.
"""
self.n_iter += 1
self.n_total_iter += 1
if self.n_total_iter % self.params.log_interval == 0:
self.log_tensorboard()
self.last_log = time.time()
if self.n_total_iter % self.params.checkpoint_interval == 0:
self.save_checkpoint()
def log_tensorboard(self):
"""
Log into tensorboard. Only by the master process.
"""
if not self.is_master:
return
for param_name, param in self.student.named_parameters():
self.tensorboard.add_scalar(
tag="parameter_mean/" + param_name, scalar_value=param.data.mean(), global_step=self.n_total_iter
)
self.tensorboard.add_scalar(
tag="parameter_std/" + param_name, scalar_value=param.data.std(), global_step=self.n_total_iter
)
if param.grad is None:
continue
self.tensorboard.add_scalar(
tag="grad_mean/" + param_name, scalar_value=param.grad.data.mean(), global_step=self.n_total_iter
)
self.tensorboard.add_scalar(
tag="grad_std/" + param_name, scalar_value=param.grad.data.std(), global_step=self.n_total_iter
)
self.tensorboard.add_scalar(
tag="losses/cum_avg_loss_epoch",
scalar_value=self.total_loss_epoch / self.n_iter,
global_step=self.n_total_iter,
)
self.tensorboard.add_scalar(tag="losses/loss", scalar_value=self.last_loss, global_step=self.n_total_iter)
self.tensorboard.add_scalar(
tag="losses/loss_ce", scalar_value=self.last_loss_ce, global_step=self.n_total_iter
)
if self.alpha_mlm > 0.0:
self.tensorboard.add_scalar(
tag="losses/loss_mlm", scalar_value=self.last_loss_mlm, global_step=self.n_total_iter
)
if self.alpha_clm > 0.0:
self.tensorboard.add_scalar(
tag="losses/loss_clm", scalar_value=self.last_loss_clm, global_step=self.n_total_iter
)
if self.alpha_mse > 0.0:
self.tensorboard.add_scalar(
tag="losses/loss_mse", scalar_value=self.last_loss_mse, global_step=self.n_total_iter
)
if self.alpha_cos > 0.0:
self.tensorboard.add_scalar(
tag="losses/loss_cos", scalar_value=self.last_loss_cos, global_step=self.n_total_iter
)
self.tensorboard.add_scalar(
tag="learning_rate/lr", scalar_value=self.scheduler.get_lr()[0], global_step=self.n_total_iter
)
self.tensorboard.add_scalar(
tag="global/memory_usage",
scalar_value=psutil.virtual_memory()._asdict()["used"] / 1_000_000,
global_step=self.n_total_iter,
)
self.tensorboard.add_scalar(
tag="global/speed", scalar_value=time.time() - self.last_log, global_step=self.n_total_iter
)
def end_epoch(self):
"""
Finally arrived at the end of epoch (full pass on dataset).
Do some tensorboard logging and checkpoint saving.
"""
logger.info(f"{self.n_sequences_epoch} sequences have been trained during this epoch.")
if self.is_master:
self.save_checkpoint(checkpoint_name=f"model_epoch_{self.epoch}.pth")
self.tensorboard.add_scalar(
tag="epoch/loss", scalar_value=self.total_loss_epoch / self.n_iter, global_step=self.epoch
)
self.epoch += 1
self.n_sequences_epoch = 0
self.n_iter = 0
self.total_loss_epoch = 0
def save_checkpoint(self, checkpoint_name: str = "checkpoint.pth"):
"""
Save the current state. Only by the master process.
"""
if not self.is_master:
return
mdl_to_save = self.student.module if hasattr(self.student, "module") else self.student
mdl_to_save.config.save_pretrained(self.dump_path)
state_dict = mdl_to_save.state_dict()
torch.save(state_dict, os.path.join(self.dump_path, checkpoint_name))
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/utils.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team and Facebook, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Utils to train DistilBERT
adapted in part from Facebook, Inc XLM model (https://github.com/facebookresearch/XLM)
"""
import json
import logging
import os
import socket
import git
import numpy as np
import torch
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - PID: %(process)d - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO,
)
logger = logging.getLogger(__name__)
def git_log(folder_path: str):
"""
Log commit info.
"""
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
}
with open(os.path.join(folder_path, "git_log.json"), "w") as f:
json.dump(repo_infos, f, indent=4)
def init_gpu_params(params):
"""
Handle single and multi-GPU / multi-node.
"""
if params.n_gpu <= 0:
params.local_rank = 0
params.master_port = -1
params.is_master = True
params.multi_gpu = False
return
assert torch.cuda.is_available()
logger.info("Initializing GPUs")
if params.n_gpu > 1:
assert params.local_rank != -1
params.world_size = int(os.environ["WORLD_SIZE"])
params.n_gpu_per_node = int(os.environ["N_GPU_NODE"])
params.global_rank = int(os.environ["RANK"])
# number of nodes / node ID
params.n_nodes = params.world_size // params.n_gpu_per_node
params.node_id = params.global_rank // params.n_gpu_per_node
params.multi_gpu = True
assert params.n_nodes == int(os.environ["N_NODES"])
assert params.node_id == int(os.environ["NODE_RANK"])
# local job (single GPU)
else:
assert params.local_rank == -1
params.n_nodes = 1
params.node_id = 0
params.local_rank = 0
params.global_rank = 0
params.world_size = 1
params.n_gpu_per_node = 1
params.multi_gpu = False
# sanity checks
assert params.n_nodes >= 1
assert 0 <= params.node_id < params.n_nodes
assert 0 <= params.local_rank <= params.global_rank < params.world_size
assert params.world_size == params.n_nodes * params.n_gpu_per_node
# define whether this is the master process / if we are in multi-node distributed mode
params.is_master = params.node_id == 0 and params.local_rank == 0
params.multi_node = params.n_nodes > 1
# summary
PREFIX = f"--- Global rank: {params.global_rank} - "
logger.info(PREFIX + "Number of nodes: %i" % params.n_nodes)
logger.info(PREFIX + "Node ID : %i" % params.node_id)
logger.info(PREFIX + "Local rank : %i" % params.local_rank)
logger.info(PREFIX + "World size : %i" % params.world_size)
logger.info(PREFIX + "GPUs per node : %i" % params.n_gpu_per_node)
logger.info(PREFIX + "Master : %s" % str(params.is_master))
logger.info(PREFIX + "Multi-node : %s" % str(params.multi_node))
logger.info(PREFIX + "Multi-GPU : %s" % str(params.multi_gpu))
logger.info(PREFIX + "Hostname : %s" % socket.gethostname())
# set GPU device
torch.cuda.set_device(params.local_rank)
# initialize multi-GPU
if params.multi_gpu:
logger.info("Initializing PyTorch distributed")
torch.distributed.init_process_group(
init_method="env://",
backend="nccl",
)
def set_seed(args):
"""
Set the random seed.
"""
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/distillation/train.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Training the distilled model.
Supported architectures include: BERT -> DistilBERT, RoBERTa -> DistilRoBERTa, GPT2 -> DistilGPT2.
"""
import argparse
import json
import os
import pickle
import shutil
import numpy as np
import torch
from distiller import Distiller
from lm_seqs_dataset import LmSeqsDataset
from transformers import (
BertConfig,
BertForMaskedLM,
BertTokenizer,
DistilBertConfig,
DistilBertForMaskedLM,
DistilBertTokenizer,
GPT2Config,
GPT2LMHeadModel,
GPT2Tokenizer,
RobertaConfig,
RobertaForMaskedLM,
RobertaTokenizer,
)
from utils import git_log, init_gpu_params, logger, set_seed
MODEL_CLASSES = {
"distilbert": (DistilBertConfig, DistilBertForMaskedLM, DistilBertTokenizer),
"roberta": (RobertaConfig, RobertaForMaskedLM, RobertaTokenizer),
"bert": (BertConfig, BertForMaskedLM, BertTokenizer),
"gpt2": (GPT2Config, GPT2LMHeadModel, GPT2Tokenizer),
}
def sanity_checks(args):
"""
A bunch of args sanity checks to perform even starting...
"""
assert (args.mlm and args.alpha_mlm > 0.0) or (not args.mlm and args.alpha_mlm == 0.0)
assert (args.alpha_mlm > 0.0 and args.alpha_clm == 0.0) or (args.alpha_mlm == 0.0 and args.alpha_clm > 0.0)
if args.mlm:
assert os.path.isfile(args.token_counts)
assert (args.student_type in ["roberta", "distilbert"]) and (args.teacher_type in ["roberta", "bert"])
else:
assert (args.student_type in ["gpt2"]) and (args.teacher_type in ["gpt2"])
assert args.teacher_type == args.student_type or (
args.student_type == "distilbert" and args.teacher_type == "bert"
)
assert os.path.isfile(args.student_config)
if args.student_pretrained_weights is not None:
assert os.path.isfile(args.student_pretrained_weights)
if args.freeze_token_type_embds:
assert args.student_type in ["roberta"]
assert args.alpha_ce >= 0.0
assert args.alpha_mlm >= 0.0
assert args.alpha_clm >= 0.0
assert args.alpha_mse >= 0.0
assert args.alpha_cos >= 0.0
assert args.alpha_ce + args.alpha_mlm + args.alpha_clm + args.alpha_mse + args.alpha_cos > 0.0
def freeze_pos_embeddings(student, args):
if args.student_type == "roberta":
student.roberta.embeddings.position_embeddings.weight.requires_grad = False
elif args.student_type == "gpt2":
student.transformer.wpe.weight.requires_grad = False
def freeze_token_type_embeddings(student, args):
if args.student_type == "roberta":
student.roberta.embeddings.token_type_embeddings.weight.requires_grad = False
def main():
parser = argparse.ArgumentParser(description="Training")
parser.add_argument("--force", action="store_true", help="Overwrite dump_path if it already exists.")
parser.add_argument(
"--dump_path", type=str, required=True, help="The output directory (log, checkpoints, parameters, etc.)"
)
parser.add_argument(
"--data_file",
type=str,
required=True,
help="The binarized file (tokenized + tokens_to_ids) and grouped by sequence.",
)
parser.add_argument(
"--student_type",
type=str,
choices=["distilbert", "roberta", "gpt2"],
required=True,
help="The student type (DistilBERT, RoBERTa).",
)
parser.add_argument("--student_config", type=str, required=True, help="Path to the student configuration.")
parser.add_argument(
"--student_pretrained_weights", default=None, type=str, help="Load student initialization checkpoint."
)
parser.add_argument(
"--teacher_type", choices=["bert", "roberta", "gpt2"], required=True, help="Teacher type (BERT, RoBERTa)."
)
parser.add_argument("--teacher_name", type=str, required=True, help="The teacher model.")
parser.add_argument("--temperature", default=2.0, type=float, help="Temperature for the softmax temperature.")
parser.add_argument(
"--alpha_ce", default=0.5, type=float, help="Linear weight for the distillation loss. Must be >=0."
)
parser.add_argument(
"--alpha_mlm",
default=0.0,
type=float,
help="Linear weight for the MLM loss. Must be >=0. Should be used in conjunction with `mlm` flag.",
)
parser.add_argument("--alpha_clm", default=0.5, type=float, help="Linear weight for the CLM loss. Must be >=0.")
parser.add_argument("--alpha_mse", default=0.0, type=float, help="Linear weight of the MSE loss. Must be >=0.")
parser.add_argument(
"--alpha_cos", default=0.0, type=float, help="Linear weight of the cosine embedding loss. Must be >=0."
)
parser.add_argument(
"--mlm", action="store_true", help="The LM step: MLM or CLM. If `mlm` is True, the MLM is used over CLM."
)
parser.add_argument(
"--mlm_mask_prop",
default=0.15,
type=float,
help="Proportion of tokens for which we need to make a prediction.",
)
parser.add_argument("--word_mask", default=0.8, type=float, help="Proportion of tokens to mask out.")
parser.add_argument("--word_keep", default=0.1, type=float, help="Proportion of tokens to keep.")
parser.add_argument("--word_rand", default=0.1, type=float, help="Proportion of tokens to randomly replace.")
parser.add_argument(
"--mlm_smoothing",
default=0.7,
type=float,
help="Smoothing parameter to emphasize more rare tokens (see XLM, similar to word2vec).",
)
parser.add_argument("--token_counts", type=str, help="The token counts in the data_file for MLM.")
parser.add_argument(
"--restrict_ce_to_mask",
action="store_true",
help="If true, compute the distillation loss only the [MLM] prediction distribution.",
)
parser.add_argument(
"--freeze_pos_embs",
action="store_true",
help="Freeze positional embeddings during distillation. For student_type in ['roberta', 'gpt2'] only.",
)
parser.add_argument(
"--freeze_token_type_embds",
action="store_true",
help="Freeze token type embeddings during distillation if existent. For student_type in ['roberta'] only.",
)
parser.add_argument("--n_epoch", type=int, default=3, help="Number of pass on the whole dataset.")
parser.add_argument("--batch_size", type=int, default=5, help="Batch size (for each process).")
parser.add_argument(
"--group_by_size",
action="store_false",
help="If true, group sequences that have similar length into the same batch. Default is true.",
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=50,
help="Gradient accumulation for larger training batches.",
)
parser.add_argument("--warmup_prop", default=0.05, type=float, help="Linear warmup proportion.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--learning_rate", default=5e-4, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--adam_epsilon", default=1e-6, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=5.0, type=float, help="Max gradient norm.")
parser.add_argument("--initializer_range", default=0.02, type=float, help="Random initialization range.")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_gpu", type=int, default=1, help="Number of GPUs in the node.")
parser.add_argument("--local_rank", type=int, default=-1, help="Distributed training - Local rank")
parser.add_argument("--seed", type=int, default=56, help="Random seed")
parser.add_argument("--log_interval", type=int, default=500, help="Tensorboard logging interval.")
parser.add_argument("--checkpoint_interval", type=int, default=4000, help="Checkpoint interval.")
args = parser.parse_args()
sanity_checks(args)
# ARGS #
init_gpu_params(args)
set_seed(args)
if args.is_master:
if os.path.exists(args.dump_path):
if not args.force:
raise ValueError(
f"Serialization dir {args.dump_path} already exists, but you have not precised wheter to overwrite"
" itUse `--force` if you want to overwrite it"
)
else:
shutil.rmtree(args.dump_path)
if not os.path.exists(args.dump_path):
os.makedirs(args.dump_path)
logger.info(f"Experiment will be dumped and logged in {args.dump_path}")
# SAVE PARAMS #
logger.info(f"Param: {args}")
with open(os.path.join(args.dump_path, "parameters.json"), "w") as f:
json.dump(vars(args), f, indent=4)
git_log(args.dump_path)
student_config_class, student_model_class, _ = MODEL_CLASSES[args.student_type]
teacher_config_class, teacher_model_class, teacher_tokenizer_class = MODEL_CLASSES[args.teacher_type]
# TOKENIZER #
tokenizer = teacher_tokenizer_class.from_pretrained(args.teacher_name)
special_tok_ids = {}
for tok_name, tok_symbol in tokenizer.special_tokens_map.items():
idx = tokenizer.all_special_tokens.index(tok_symbol)
special_tok_ids[tok_name] = tokenizer.all_special_ids[idx]
logger.info(f"Special tokens {special_tok_ids}")
args.special_tok_ids = special_tok_ids
args.max_model_input_size = tokenizer.max_model_input_sizes[args.teacher_name]
# DATA LOADER #
logger.info(f"Loading data from {args.data_file}")
with open(args.data_file, "rb") as fp:
data = pickle.load(fp)
if args.mlm:
logger.info(f"Loading token counts from {args.token_counts} (already pre-computed)")
with open(args.token_counts, "rb") as fp:
counts = pickle.load(fp)
token_probs = np.maximum(counts, 1) ** -args.mlm_smoothing
for idx in special_tok_ids.values():
token_probs[idx] = 0.0 # do not predict special tokens
token_probs = torch.from_numpy(token_probs)
else:
token_probs = None
train_lm_seq_dataset = LmSeqsDataset(params=args, data=data)
logger.info("Data loader created.")
# STUDENT #
logger.info(f"Loading student config from {args.student_config}")
stu_architecture_config = student_config_class.from_pretrained(args.student_config)
stu_architecture_config.output_hidden_states = True
if args.student_pretrained_weights is not None:
logger.info(f"Loading pretrained weights from {args.student_pretrained_weights}")
student = student_model_class.from_pretrained(args.student_pretrained_weights, config=stu_architecture_config)
else:
student = student_model_class(stu_architecture_config)
if args.n_gpu > 0:
student.to(f"cuda:{args.local_rank}")
logger.info("Student loaded.")
# TEACHER #
teacher = teacher_model_class.from_pretrained(args.teacher_name, output_hidden_states=True)
if args.n_gpu > 0:
teacher.to(f"cuda:{args.local_rank}")
logger.info(f"Teacher loaded from {args.teacher_name}.")
# FREEZING #
if args.freeze_pos_embs:
freeze_pos_embeddings(student, args)
if args.freeze_token_type_embds:
freeze_token_type_embeddings(student, args)
# SANITY CHECKS #
assert student.config.vocab_size == teacher.config.vocab_size
assert student.config.hidden_size == teacher.config.hidden_size
assert student.config.max_position_embeddings == teacher.config.max_position_embeddings
if args.mlm:
assert token_probs.size(0) == stu_architecture_config.vocab_size
# DISTILLER #
torch.cuda.empty_cache()
distiller = Distiller(
params=args, dataset=train_lm_seq_dataset, token_probs=token_probs, student=student, teacher=teacher
)
distiller.train()
logger.info("Let's go get some drinks.")
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/training_configs/distilbert-base-multilingual-cased.json | {
"activation": "gelu",
"attention_dropout": 0.1,
"dim": 768,
"dropout": 0.1,
"hidden_dim": 3072,
"initializer_range": 0.02,
"max_position_embeddings": 512,
"n_heads": 12,
"n_layers": 6,
"sinusoidal_pos_embds": true,
"tie_weights_": true,
"vocab_size": 119547
}
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/training_configs/distilbert-base-cased.json | {
"activation": "gelu",
"attention_dropout": 0.1,
"dim": 768,
"dropout": 0.1,
"hidden_dim": 3072,
"initializer_range": 0.02,
"max_position_embeddings": 512,
"n_heads": 12,
"n_layers": 6,
"sinusoidal_pos_embds": true,
"tie_weights_": true,
"vocab_size": 28996
}
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/training_configs/distilroberta-base.json | {
"vocab_size": 50265,
"hidden_size": 768,
"num_hidden_layers": 6,
"num_attention_heads": 12,
"intermediate_size": 3072,
"hidden_act": "gelu",
"hidden_dropout_prob": 0.1,
"attention_probs_dropout_prob": 0.1,
"max_position_embeddings": 514,
"type_vocab_size": 1,
"initializer_range": 0.02,
"layer_norm_eps": 0.00001
} | 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/training_configs/distilbert-base-uncased.json | {
"activation": "gelu",
"attention_dropout": 0.1,
"dim": 768,
"dropout": 0.1,
"hidden_dim": 3072,
"initializer_range": 0.02,
"max_position_embeddings": 512,
"n_heads": 12,
"n_layers": 6,
"sinusoidal_pos_embds": true,
"tie_weights_": true,
"vocab_size": 30522
}
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/training_configs/distilgpt2.json | {
"initializer_range": 0.02,
"layer_norm_epsilon": 0.00001,
"n_embd": 768,
"n_head": 12,
"n_layer": 6,
"n_positions": 1024,
"vocab_size": 50257
} | 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/scripts/token_counts.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Preprocessing script before training the distilled model.
"""
import argparse
import logging
import pickle
from collections import Counter
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
logger = logging.getLogger(__name__)
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description="Token Counts for smoothing the masking probabilities in MLM (cf XLM/word2vec)"
)
parser.add_argument(
"--data_file", type=str, default="data/dump.bert-base-uncased.pickle", help="The binarized dataset."
)
parser.add_argument(
"--token_counts_dump", type=str, default="data/token_counts.bert-base-uncased.pickle", help="The dump file."
)
parser.add_argument("--vocab_size", default=30522, type=int)
args = parser.parse_args()
logger.info(f"Loading data from {args.data_file}")
with open(args.data_file, "rb") as fp:
data = pickle.load(fp)
logger.info("Counting occurrences for MLM.")
counter = Counter()
for tk_ids in data:
counter.update(tk_ids)
counts = [0] * args.vocab_size
for k, v in counter.items():
counts[k] = v
logger.info(f"Dump to {args.token_counts_dump}")
with open(args.token_counts_dump, "wb") as handle:
pickle.dump(counts, handle, protocol=pickle.HIGHEST_PROTOCOL)
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/scripts/binarized_data.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Preprocessing script before distillation.
"""
import argparse
import logging
import pickle
import random
import time
import numpy as np
from transformers import BertTokenizer, GPT2Tokenizer, RobertaTokenizer
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s", datefmt="%m/%d/%Y %H:%M:%S", level=logging.INFO
)
logger = logging.getLogger(__name__)
def main():
parser = argparse.ArgumentParser(
description="Preprocess the data to avoid re-doing it several times by (tokenization + token_to_ids)."
)
parser.add_argument("--file_path", type=str, default="data/dump.txt", help="The path to the data.")
parser.add_argument("--tokenizer_type", type=str, default="bert", choices=["bert", "roberta", "gpt2"])
parser.add_argument("--tokenizer_name", type=str, default="bert-base-uncased", help="The tokenizer to use.")
parser.add_argument("--dump_file", type=str, default="data/dump", help="The dump file prefix.")
args = parser.parse_args()
logger.info(f"Loading Tokenizer ({args.tokenizer_name})")
if args.tokenizer_type == "bert":
tokenizer = BertTokenizer.from_pretrained(args.tokenizer_name)
bos = tokenizer.special_tokens_map["cls_token"] # `[CLS]`
sep = tokenizer.special_tokens_map["sep_token"] # `[SEP]`
elif args.tokenizer_type == "roberta":
tokenizer = RobertaTokenizer.from_pretrained(args.tokenizer_name)
bos = tokenizer.special_tokens_map["cls_token"] # `<s>`
sep = tokenizer.special_tokens_map["sep_token"] # `</s>`
elif args.tokenizer_type == "gpt2":
tokenizer = GPT2Tokenizer.from_pretrained(args.tokenizer_name)
bos = tokenizer.special_tokens_map["bos_token"] # `<|endoftext|>`
sep = tokenizer.special_tokens_map["eos_token"] # `<|endoftext|>`
logger.info(f"Loading text from {args.file_path}")
with open(args.file_path, "r", encoding="utf8") as fp:
data = fp.readlines()
logger.info("Start encoding")
logger.info(f"{len(data)} examples to process.")
rslt = []
iter = 0
interval = 10000
start = time.time()
for text in data:
text = f"{bos} {text.strip()} {sep}"
token_ids = tokenizer.encode(text, add_special_tokens=False)
rslt.append(token_ids)
iter += 1
if iter % interval == 0:
end = time.time()
logger.info(f"{iter} examples processed. - {(end-start):.2f}s/{interval}expl")
start = time.time()
logger.info("Finished binarization")
logger.info(f"{len(data)} examples processed.")
dp_file = f"{args.dump_file}.{args.tokenizer_name}.pickle"
vocab_size = tokenizer.vocab_size
if vocab_size < (1 << 16):
rslt_ = [np.uint16(d) for d in rslt]
else:
rslt_ = [np.int32(d) for d in rslt]
random.shuffle(rslt_)
logger.info(f"Dump to {dp_file}")
with open(dp_file, "wb") as handle:
pickle.dump(rslt_, handle, protocol=pickle.HIGHEST_PROTOCOL)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/scripts/extract_distilbert.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Preprocessing script before training DistilBERT.
Specific to BERT -> DistilBERT.
"""
import argparse
import torch
from transformers import BertForMaskedLM
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description=(
"Extraction some layers of the full BertForMaskedLM or RObertaForMaskedLM for Transfer Learned"
" Distillation"
)
)
parser.add_argument("--model_type", default="bert", choices=["bert"])
parser.add_argument("--model_name", default="bert-base-uncased", type=str)
parser.add_argument("--dump_checkpoint", default="serialization_dir/tf_bert-base-uncased_0247911.pth", type=str)
parser.add_argument("--vocab_transform", action="store_true")
args = parser.parse_args()
if args.model_type == "bert":
model = BertForMaskedLM.from_pretrained(args.model_name)
prefix = "bert"
else:
raise ValueError('args.model_type should be "bert".')
state_dict = model.state_dict()
compressed_sd = {}
for w in ["word_embeddings", "position_embeddings"]:
compressed_sd[f"distilbert.embeddings.{w}.weight"] = state_dict[f"{prefix}.embeddings.{w}.weight"]
for w in ["weight", "bias"]:
compressed_sd[f"distilbert.embeddings.LayerNorm.{w}"] = state_dict[f"{prefix}.embeddings.LayerNorm.{w}"]
std_idx = 0
for teacher_idx in [0, 2, 4, 7, 9, 11]:
for w in ["weight", "bias"]:
compressed_sd[f"distilbert.transformer.layer.{std_idx}.attention.q_lin.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.attention.self.query.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.attention.k_lin.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.attention.self.key.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.attention.v_lin.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.attention.self.value.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.attention.out_lin.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.attention.output.dense.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.sa_layer_norm.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.attention.output.LayerNorm.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.ffn.lin1.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.intermediate.dense.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.ffn.lin2.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.output.dense.{w}"
]
compressed_sd[f"distilbert.transformer.layer.{std_idx}.output_layer_norm.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.output.LayerNorm.{w}"
]
std_idx += 1
compressed_sd["vocab_projector.weight"] = state_dict["cls.predictions.decoder.weight"]
compressed_sd["vocab_projector.bias"] = state_dict["cls.predictions.bias"]
if args.vocab_transform:
for w in ["weight", "bias"]:
compressed_sd[f"vocab_transform.{w}"] = state_dict[f"cls.predictions.transform.dense.{w}"]
compressed_sd[f"vocab_layer_norm.{w}"] = state_dict[f"cls.predictions.transform.LayerNorm.{w}"]
print(f"N layers selected for distillation: {std_idx}")
print(f"Number of params transferred for distillation: {len(compressed_sd.keys())}")
print(f"Save transferred checkpoint to {args.dump_checkpoint}.")
torch.save(compressed_sd, args.dump_checkpoint)
| 0 |
hf_public_repos/transformers/examples/research_projects/distillation | hf_public_repos/transformers/examples/research_projects/distillation/scripts/extract.py | # coding=utf-8
# Copyright 2019-present, the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Preprocessing script before training the distilled model.
Specific to RoBERTa -> DistilRoBERTa and GPT2 -> DistilGPT2.
"""
import argparse
import torch
from transformers import GPT2LMHeadModel, RobertaForMaskedLM
if __name__ == "__main__":
parser = argparse.ArgumentParser(
description=(
"Extraction some layers of the full RobertaForMaskedLM or GPT2LMHeadModel for Transfer Learned"
" Distillation"
)
)
parser.add_argument("--model_type", default="roberta", choices=["roberta", "gpt2"])
parser.add_argument("--model_name", default="roberta-large", type=str)
parser.add_argument("--dump_checkpoint", default="serialization_dir/tf_roberta_048131723.pth", type=str)
parser.add_argument("--vocab_transform", action="store_true")
args = parser.parse_args()
if args.model_type == "roberta":
model = RobertaForMaskedLM.from_pretrained(args.model_name)
prefix = "roberta"
elif args.model_type == "gpt2":
model = GPT2LMHeadModel.from_pretrained(args.model_name)
prefix = "transformer"
state_dict = model.state_dict()
compressed_sd = {}
# Embeddings #
if args.model_type == "gpt2":
for param_name in ["wte.weight", "wpe.weight"]:
compressed_sd[f"{prefix}.{param_name}"] = state_dict[f"{prefix}.{param_name}"]
else:
for w in ["word_embeddings", "position_embeddings", "token_type_embeddings"]:
param_name = f"{prefix}.embeddings.{w}.weight"
compressed_sd[param_name] = state_dict[param_name]
for w in ["weight", "bias"]:
param_name = f"{prefix}.embeddings.LayerNorm.{w}"
compressed_sd[param_name] = state_dict[param_name]
# Transformer Blocks #
std_idx = 0
for teacher_idx in [0, 2, 4, 7, 9, 11]:
if args.model_type == "gpt2":
for layer in ["ln_1", "attn.c_attn", "attn.c_proj", "ln_2", "mlp.c_fc", "mlp.c_proj"]:
for w in ["weight", "bias"]:
compressed_sd[f"{prefix}.h.{std_idx}.{layer}.{w}"] = state_dict[
f"{prefix}.h.{teacher_idx}.{layer}.{w}"
]
compressed_sd[f"{prefix}.h.{std_idx}.attn.bias"] = state_dict[f"{prefix}.h.{teacher_idx}.attn.bias"]
else:
for layer in [
"attention.self.query",
"attention.self.key",
"attention.self.value",
"attention.output.dense",
"attention.output.LayerNorm",
"intermediate.dense",
"output.dense",
"output.LayerNorm",
]:
for w in ["weight", "bias"]:
compressed_sd[f"{prefix}.encoder.layer.{std_idx}.{layer}.{w}"] = state_dict[
f"{prefix}.encoder.layer.{teacher_idx}.{layer}.{w}"
]
std_idx += 1
# Language Modeling Head ###s
if args.model_type == "roberta":
for layer in ["lm_head.decoder.weight", "lm_head.bias"]:
compressed_sd[f"{layer}"] = state_dict[f"{layer}"]
if args.vocab_transform:
for w in ["weight", "bias"]:
compressed_sd[f"lm_head.dense.{w}"] = state_dict[f"lm_head.dense.{w}"]
compressed_sd[f"lm_head.layer_norm.{w}"] = state_dict[f"lm_head.layer_norm.{w}"]
elif args.model_type == "gpt2":
for w in ["weight", "bias"]:
compressed_sd[f"{prefix}.ln_f.{w}"] = state_dict[f"{prefix}.ln_f.{w}"]
compressed_sd["lm_head.weight"] = state_dict["lm_head.weight"]
print(f"N layers selected for distillation: {std_idx}")
print(f"Number of params transferred for distillation: {len(compressed_sd.keys())}")
print(f"Save transferred checkpoint to {args.dump_checkpoint}.")
torch.save(compressed_sd, args.dump_checkpoint)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/layoutlmv3/requirements.txt | datasets
seqeval
pillow
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/layoutlmv3/README.md | <!---
Copyright 2022 The HuggingFace Team. All rights reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
-->
# Token classification with LayoutLMv3 (PyTorch version)
This directory contains a script, `run_funsd_cord.py`, that can be used to fine-tune (or evaluate) LayoutLMv3 on form understanding datasets, such as [FUNSD](https://guillaumejaume.github.io/FUNSD/) and [CORD](https://github.com/clovaai/cord).
The script `run_funsd_cord.py` leverages the 🤗 Datasets library and the Trainer API. You can easily customize it to your needs.
## Fine-tuning on FUNSD
Fine-tuning LayoutLMv3 for token classification on [FUNSD](https://guillaumejaume.github.io/FUNSD/) can be done as follows:
```bash
python run_funsd_cord.py \
--model_name_or_path microsoft/layoutlmv3-base \
--dataset_name funsd \
--output_dir layoutlmv3-test \
--do_train \
--do_eval \
--max_steps 1000 \
--evaluation_strategy steps \
--eval_steps 100 \
--learning_rate 1e-5 \
--load_best_model_at_end \
--metric_for_best_model "eval_f1" \
--push_to_hub \
--push_to_hub°model_id layoutlmv3-finetuned-funsd
```
👀 The resulting model can be found here: https://huggingface.co/nielsr/layoutlmv3-finetuned-funsd. By specifying the `push_to_hub` flag, the model gets uploaded automatically to the hub (regularly), together with a model card, which includes metrics such as precision, recall and F1. Note that you can easily update the model card, as it's just a README file of the respective repo on the hub.
There's also the "Training metrics" [tab](https://huggingface.co/nielsr/layoutlmv3-finetuned-funsd/tensorboard), which shows Tensorboard logs over the course of training. Pretty neat, huh?
## Fine-tuning on CORD
Fine-tuning LayoutLMv3 for token classification on [CORD](https://github.com/clovaai/cord) can be done as follows:
```bash
python run_funsd_cord.py \
--model_name_or_path microsoft/layoutlmv3-base \
--dataset_name cord \
--output_dir layoutlmv3-test \
--do_train \
--do_eval \
--max_steps 1000 \
--evaluation_strategy steps \
--eval_steps 100 \
--learning_rate 5e-5 \
--load_best_model_at_end \
--metric_for_best_model "eval_f1" \
--push_to_hub \
--push_to_hub°model_id layoutlmv3-finetuned-cord
```
👀 The resulting model can be found here: https://huggingface.co/nielsr/layoutlmv3-finetuned-cord. Note that a model card gets generated automatically in case you specify the `push_to_hub` flag. | 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/layoutlmv3/run_funsd_cord.py | #!/usr/bin/env python
# coding=utf-8
# Copyright 2022 The HuggingFace Team All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Fine-tuning LayoutLMv3 for token classification on FUNSD or CORD.
"""
# You can also adapt this script on your own token classification task and datasets. Pointers for this are left as
# comments.
import logging
import os
import sys
from dataclasses import dataclass, field
from typing import Optional
import datasets
import numpy as np
from datasets import ClassLabel, load_dataset, load_metric
import transformers
from transformers import (
AutoConfig,
AutoModelForTokenClassification,
AutoProcessor,
HfArgumentParser,
Trainer,
TrainingArguments,
set_seed,
)
from transformers.data.data_collator import default_data_collator
from transformers.trainer_utils import get_last_checkpoint
from transformers.utils import check_min_version
from transformers.utils.versions import require_version
# Will error if the minimal version of Transformers is not installed. Remove at your own risks.
check_min_version("4.19.0.dev0")
require_version("datasets>=1.8.0", "To fix: pip install -r examples/pytorch/token-classification/requirements.txt")
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
default="microsoft/layoutlmv3-base",
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"},
)
config_name: Optional[str] = field(
default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
)
processor_name: Optional[str] = field(
default=None, metadata={"help": "Name or path to the processor files if not the same as model_name"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
model_revision: str = field(
default="main",
metadata={"help": "The specific model version to use (can be a branch name, tag name or commit id)."},
)
use_auth_token: bool = field(
default=False,
metadata={
"help": (
"Will use the token generated when running `huggingface-cli login` (necessary to use this script "
"with private models)."
)
},
)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
"""
task_name: Optional[str] = field(default="ner", metadata={"help": "The name of the task (ner, pos...)."})
dataset_name: Optional[str] = field(
default="nielsr/funsd-layoutlmv3",
metadata={"help": "The name of the dataset to use (via the datasets library)."},
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_file: Optional[str] = field(
default=None, metadata={"help": "The input training data file (a csv or JSON file)."}
)
validation_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input evaluation data file to evaluate on (a csv or JSON file)."},
)
test_file: Optional[str] = field(
default=None,
metadata={"help": "An optional input test data file to predict on (a csv or JSON file)."},
)
text_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of text to input in the file (a csv or JSON file)."}
)
label_column_name: Optional[str] = field(
default=None, metadata={"help": "The column name of label to input in the file (a csv or JSON file)."}
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached training and evaluation sets"}
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_seq_length: int = field(
default=512,
metadata={
"help": (
"The maximum total input sequence length after tokenization. If set, sequences longer "
"than this will be truncated, sequences shorter will be padded."
)
},
)
max_train_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of training examples to this "
"value if set."
)
},
)
max_eval_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of evaluation examples to this "
"value if set."
)
},
)
max_predict_samples: Optional[int] = field(
default=None,
metadata={
"help": (
"For debugging purposes or quicker training, truncate the number of prediction examples to this "
"value if set."
)
},
)
label_all_tokens: bool = field(
default=False,
metadata={
"help": (
"Whether to put the label for one word on all tokens of generated by that word or just on the "
"one (in which case the other tokens will have a padding index)."
)
},
)
return_entity_level_metrics: bool = field(
default=False,
metadata={"help": "Whether to return all the entity levels during evaluation or just the overall ones."},
)
def __post_init__(self):
if self.dataset_name is None and self.train_file is None and self.validation_file is None:
raise ValueError("Need either a dataset name or a training/validation file.")
else:
if self.train_file is not None:
extension = self.train_file.split(".")[-1]
assert extension in ["csv", "json"], "`train_file` should be a csv or a json file."
if self.validation_file is not None:
extension = self.validation_file.split(".")[-1]
assert extension in ["csv", "json"], "`validation_file` should be a csv or a json file."
self.task_name = self.task_name.lower()
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
# If we pass only one argument to the script and it's the path to a json file,
# let's parse it to get our arguments.
model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
else:
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
log_level = training_args.get_process_log_level()
logger.setLevel(log_level)
datasets.utils.logging.set_verbosity(log_level)
transformers.utils.logging.set_verbosity(log_level)
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Log on each process the small summary:
logger.warning(
f"Process rank: {training_args.local_rank}, device: {training_args.device}, n_gpu: {training_args.n_gpu}"
+ f"distributed training: {bool(training_args.local_rank != -1)}, 16-bits training: {training_args.fp16}"
)
logger.info(f"Training/evaluation parameters {training_args}")
# Detecting last checkpoint.
last_checkpoint = None
if os.path.isdir(training_args.output_dir) and training_args.do_train and not training_args.overwrite_output_dir:
last_checkpoint = get_last_checkpoint(training_args.output_dir)
if last_checkpoint is None and len(os.listdir(training_args.output_dir)) > 0:
raise ValueError(
f"Output directory ({training_args.output_dir}) already exists and is not empty. "
"Use --overwrite_output_dir to overcome."
)
elif last_checkpoint is not None and training_args.resume_from_checkpoint is None:
logger.info(
f"Checkpoint detected, resuming training at {last_checkpoint}. To avoid this behavior, change "
"the `--output_dir` or add `--overwrite_output_dir` to train from scratch."
)
# Set seed before initializing model.
set_seed(training_args.seed)
# Get the datasets
# In distributed training, the load_dataset function guarantee that only one local process can concurrently
# download the dataset.
if data_args.dataset_name == "funsd":
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
"nielsr/funsd-layoutlmv3",
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=True if model_args.use_auth_token else None,
)
elif data_args.dataset_name == "cord":
# Downloading and loading a dataset from the hub.
dataset = load_dataset(
"nielsr/cord-layoutlmv3",
data_args.dataset_config_name,
cache_dir=model_args.cache_dir,
token=True if model_args.use_auth_token else None,
)
else:
raise ValueError("This script only supports either FUNSD or CORD out-of-the-box.")
if training_args.do_train:
column_names = dataset["train"].column_names
features = dataset["train"].features
else:
column_names = dataset["test"].column_names
features = dataset["test"].features
image_column_name = "image"
text_column_name = "words" if "words" in column_names else "tokens"
boxes_column_name = "bboxes"
label_column_name = (
f"{data_args.task_name}_tags" if f"{data_args.task_name}_tags" in column_names else column_names[1]
)
remove_columns = column_names
# In the event the labels are not a `Sequence[ClassLabel]`, we will need to go through the dataset to get the
# unique labels.
def get_label_list(labels):
unique_labels = set()
for label in labels:
unique_labels = unique_labels | set(label)
label_list = list(unique_labels)
label_list.sort()
return label_list
# If the labels are of type ClassLabel, they are already integers and we have the map stored somewhere.
# Otherwise, we have to get the list of labels manually.
if isinstance(features[label_column_name].feature, ClassLabel):
label_list = features[label_column_name].feature.names
# No need to convert the labels since they are already ints.
id2label = dict(enumerate(label_list))
label2id = {v: k for k, v in enumerate(label_list)}
else:
label_list = get_label_list(datasets["train"][label_column_name])
id2label = dict(enumerate(label_list))
label2id = {v: k for k, v in enumerate(label_list)}
num_labels = len(label_list)
# Load pretrained model and processor
#
# Distributed training:
# The .from_pretrained methods guarantee that only one local process can concurrently
# download model & vocab.
config = AutoConfig.from_pretrained(
model_args.config_name if model_args.config_name else model_args.model_name_or_path,
num_labels=num_labels,
finetuning_task=data_args.task_name,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
processor = AutoProcessor.from_pretrained(
model_args.processor_name if model_args.processor_name else model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
use_fast=True,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
add_prefix_space=True,
apply_ocr=False,
)
model = AutoModelForTokenClassification.from_pretrained(
model_args.model_name_or_path,
from_tf=bool(".ckpt" in model_args.model_name_or_path),
config=config,
cache_dir=model_args.cache_dir,
revision=model_args.model_revision,
token=True if model_args.use_auth_token else None,
)
# Set the correspondences label/ID inside the model config
model.config.label2id = label2id
model.config.id2label = id2label
# Preprocessing the dataset
# The processor does everything for us (prepare the image using LayoutLMv3ImageProcessor
# and prepare the words, boxes and word-level labels using LayoutLMv3TokenizerFast)
def prepare_examples(examples):
images = examples[image_column_name]
words = examples[text_column_name]
boxes = examples[boxes_column_name]
word_labels = examples[label_column_name]
encoding = processor(
images,
words,
boxes=boxes,
word_labels=word_labels,
truncation=True,
padding="max_length",
max_length=data_args.max_seq_length,
)
return encoding
if training_args.do_train:
if "train" not in dataset:
raise ValueError("--do_train requires a train dataset")
train_dataset = dataset["train"]
if data_args.max_train_samples is not None:
train_dataset = train_dataset.select(range(data_args.max_train_samples))
with training_args.main_process_first(desc="train dataset map pre-processing"):
train_dataset = train_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_eval:
validation_name = "test"
if validation_name not in dataset:
raise ValueError("--do_eval requires a validation dataset")
eval_dataset = dataset[validation_name]
if data_args.max_eval_samples is not None:
eval_dataset = eval_dataset.select(range(data_args.max_eval_samples))
with training_args.main_process_first(desc="validation dataset map pre-processing"):
eval_dataset = eval_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
if training_args.do_predict:
if "test" not in datasets:
raise ValueError("--do_predict requires a test dataset")
predict_dataset = datasets["test"]
if data_args.max_predict_samples is not None:
max_predict_samples = min(len(predict_dataset), data_args.max_predict_samples)
predict_dataset = predict_dataset.select(range(max_predict_samples))
with training_args.main_process_first(desc="prediction dataset map pre-processing"):
predict_dataset = predict_dataset.map(
prepare_examples,
batched=True,
remove_columns=remove_columns,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
)
# Metrics
metric = load_metric("seqeval")
def compute_metrics(p):
predictions, labels = p
predictions = np.argmax(predictions, axis=2)
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
true_labels = [
[label_list[l] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
results = metric.compute(predictions=true_predictions, references=true_labels)
if data_args.return_entity_level_metrics:
# Unpack nested dictionaries
final_results = {}
for key, value in results.items():
if isinstance(value, dict):
for n, v in value.items():
final_results[f"{key}_{n}"] = v
else:
final_results[key] = value
return final_results
else:
return {
"precision": results["overall_precision"],
"recall": results["overall_recall"],
"f1": results["overall_f1"],
"accuracy": results["overall_accuracy"],
}
# Initialize our Trainer
trainer = Trainer(
model=model,
args=training_args,
train_dataset=train_dataset if training_args.do_train else None,
eval_dataset=eval_dataset if training_args.do_eval else None,
tokenizer=processor,
data_collator=default_data_collator,
compute_metrics=compute_metrics,
)
# Training
if training_args.do_train:
checkpoint = None
if training_args.resume_from_checkpoint is not None:
checkpoint = training_args.resume_from_checkpoint
elif last_checkpoint is not None:
checkpoint = last_checkpoint
train_result = trainer.train(resume_from_checkpoint=checkpoint)
metrics = train_result.metrics
trainer.save_model() # Saves the tokenizer too for easy upload
max_train_samples = (
data_args.max_train_samples if data_args.max_train_samples is not None else len(train_dataset)
)
metrics["train_samples"] = min(max_train_samples, len(train_dataset))
trainer.log_metrics("train", metrics)
trainer.save_metrics("train", metrics)
trainer.save_state()
# Evaluation
if training_args.do_eval:
logger.info("*** Evaluate ***")
metrics = trainer.evaluate()
max_eval_samples = data_args.max_eval_samples if data_args.max_eval_samples is not None else len(eval_dataset)
metrics["eval_samples"] = min(max_eval_samples, len(eval_dataset))
trainer.log_metrics("eval", metrics)
trainer.save_metrics("eval", metrics)
# Predict
if training_args.do_predict:
logger.info("*** Predict ***")
predictions, labels, metrics = trainer.predict(predict_dataset, metric_key_prefix="predict")
predictions = np.argmax(predictions, axis=2)
# Remove ignored index (special tokens)
true_predictions = [
[label_list[p] for (p, l) in zip(prediction, label) if l != -100]
for prediction, label in zip(predictions, labels)
]
trainer.log_metrics("predict", metrics)
trainer.save_metrics("predict", metrics)
# Save predictions
output_predictions_file = os.path.join(training_args.output_dir, "predictions.txt")
if trainer.is_world_process_zero():
with open(output_predictions_file, "w") as writer:
for prediction in true_predictions:
writer.write(" ".join(prediction) + "\n")
kwargs = {"finetuned_from": model_args.model_name_or_path, "tasks": "token-classification"}
if data_args.dataset_name is not None:
kwargs["dataset_tags"] = data_args.dataset_name
if data_args.dataset_config_name is not None:
kwargs["dataset_args"] = data_args.dataset_config_name
kwargs["dataset"] = f"{data_args.dataset_name} {data_args.dataset_config_name}"
else:
kwargs["dataset"] = data_args.dataset_name
if training_args.push_to_hub:
trainer.push_to_hub(**kwargs)
else:
trainer.create_model_card(**kwargs)
def _mp_fn(index):
# For xla_spawn (TPUs)
main()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mm-imdb/README.md | ## MM-IMDb
Based on the script [`run_mmimdb.py`](https://github.com/huggingface/transformers/blob/main/examples/research_projects/mm-imdb/run_mmimdb.py).
[MM-IMDb](http://lisi1.unal.edu.co/mmimdb/) is a Multimodal dataset with around 26,000 movies including images, plots and other metadata.
### Training on MM-IMDb
```
python run_mmimdb.py \
--data_dir /path/to/mmimdb/dataset/ \
--model_type bert \
--model_name_or_path bert-base-uncased \
--output_dir /path/to/save/dir/ \
--do_train \
--do_eval \
--max_seq_len 512 \
--gradient_accumulation_steps 20 \
--num_image_embeds 3 \
--num_train_epochs 100 \
--patience 5
```
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mm-imdb/utils_mmimdb.py | # coding=utf-8
# Copyright (c) Facebook, Inc. and its affiliates.
# Copyright (c) HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import json
import os
from collections import Counter
import torch
import torchvision
import torchvision.transforms as transforms
from PIL import Image
from torch import nn
from torch.utils.data import Dataset
POOLING_BREAKDOWN = {1: (1, 1), 2: (2, 1), 3: (3, 1), 4: (2, 2), 5: (5, 1), 6: (3, 2), 7: (7, 1), 8: (4, 2), 9: (3, 3)}
class ImageEncoder(nn.Module):
def __init__(self, args):
super().__init__()
model = torchvision.models.resnet152(pretrained=True)
modules = list(model.children())[:-2]
self.model = nn.Sequential(*modules)
self.pool = nn.AdaptiveAvgPool2d(POOLING_BREAKDOWN[args.num_image_embeds])
def forward(self, x):
# Bx3x224x224 -> Bx2048x7x7 -> Bx2048xN -> BxNx2048
out = self.pool(self.model(x))
out = torch.flatten(out, start_dim=2)
out = out.transpose(1, 2).contiguous()
return out # BxNx2048
class JsonlDataset(Dataset):
def __init__(self, data_path, tokenizer, transforms, labels, max_seq_length):
self.data = [json.loads(l) for l in open(data_path)]
self.data_dir = os.path.dirname(data_path)
self.tokenizer = tokenizer
self.labels = labels
self.n_classes = len(labels)
self.max_seq_length = max_seq_length
self.transforms = transforms
def __len__(self):
return len(self.data)
def __getitem__(self, index):
sentence = torch.LongTensor(self.tokenizer.encode(self.data[index]["text"], add_special_tokens=True))
start_token, sentence, end_token = sentence[0], sentence[1:-1], sentence[-1]
sentence = sentence[: self.max_seq_length]
label = torch.zeros(self.n_classes)
label[[self.labels.index(tgt) for tgt in self.data[index]["label"]]] = 1
image = Image.open(os.path.join(self.data_dir, self.data[index]["img"])).convert("RGB")
image = self.transforms(image)
return {
"image_start_token": start_token,
"image_end_token": end_token,
"sentence": sentence,
"image": image,
"label": label,
}
def get_label_frequencies(self):
label_freqs = Counter()
for row in self.data:
label_freqs.update(row["label"])
return label_freqs
def collate_fn(batch):
lens = [len(row["sentence"]) for row in batch]
bsz, max_seq_len = len(batch), max(lens)
mask_tensor = torch.zeros(bsz, max_seq_len, dtype=torch.long)
text_tensor = torch.zeros(bsz, max_seq_len, dtype=torch.long)
for i_batch, (input_row, length) in enumerate(zip(batch, lens)):
text_tensor[i_batch, :length] = input_row["sentence"]
mask_tensor[i_batch, :length] = 1
img_tensor = torch.stack([row["image"] for row in batch])
tgt_tensor = torch.stack([row["label"] for row in batch])
img_start_token = torch.stack([row["image_start_token"] for row in batch])
img_end_token = torch.stack([row["image_end_token"] for row in batch])
return text_tensor, mask_tensor, img_tensor, img_start_token, img_end_token, tgt_tensor
def get_mmimdb_labels():
return [
"Crime",
"Drama",
"Thriller",
"Action",
"Comedy",
"Romance",
"Documentary",
"Short",
"Mystery",
"History",
"Family",
"Adventure",
"Fantasy",
"Sci-Fi",
"Western",
"Horror",
"Sport",
"War",
"Music",
"Musical",
"Animation",
"Biography",
"Film-Noir",
]
def get_image_transforms():
return transforms.Compose(
[
transforms.Resize(256),
transforms.CenterCrop(224),
transforms.ToTensor(),
transforms.Normalize(
mean=[0.46777044, 0.44531429, 0.40661017],
std=[0.12221994, 0.12145835, 0.14380469],
),
]
)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/mm-imdb/run_mmimdb.py | # coding=utf-8
# Copyright (c) Facebook, Inc. and its affiliates.
# Copyright (c) HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Finetuning the library models for multimodal multiclass prediction on MM-IMDB dataset."""
import argparse
import glob
import json
import logging
import os
import random
import numpy as np
import torch
from sklearn.metrics import f1_score
from torch import nn
from torch.utils.data import DataLoader, RandomSampler, SequentialSampler
from torch.utils.data.distributed import DistributedSampler
from tqdm import tqdm, trange
from utils_mmimdb import ImageEncoder, JsonlDataset, collate_fn, get_image_transforms, get_mmimdb_labels
import transformers
from transformers import (
WEIGHTS_NAME,
AdamW,
AutoConfig,
AutoModel,
AutoTokenizer,
MMBTConfig,
MMBTForClassification,
get_linear_schedule_with_warmup,
)
from transformers.trainer_utils import is_main_process
try:
from torch.utils.tensorboard import SummaryWriter
except ImportError:
from tensorboardX import SummaryWriter
logger = logging.getLogger(__name__)
def set_seed(args):
random.seed(args.seed)
np.random.seed(args.seed)
torch.manual_seed(args.seed)
if args.n_gpu > 0:
torch.cuda.manual_seed_all(args.seed)
def train(args, train_dataset, model, tokenizer, criterion):
"""Train the model"""
if args.local_rank in [-1, 0]:
tb_writer = SummaryWriter()
args.train_batch_size = args.per_gpu_train_batch_size * max(1, args.n_gpu)
train_sampler = RandomSampler(train_dataset) if args.local_rank == -1 else DistributedSampler(train_dataset)
train_dataloader = DataLoader(
train_dataset,
sampler=train_sampler,
batch_size=args.train_batch_size,
collate_fn=collate_fn,
num_workers=args.num_workers,
)
if args.max_steps > 0:
t_total = args.max_steps
args.num_train_epochs = args.max_steps // (len(train_dataloader) // args.gradient_accumulation_steps) + 1
else:
t_total = len(train_dataloader) // args.gradient_accumulation_steps * args.num_train_epochs
# Prepare optimizer and schedule (linear warmup and decay)
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": args.weight_decay,
},
{"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0},
]
optimizer = AdamW(optimizer_grouped_parameters, lr=args.learning_rate, eps=args.adam_epsilon)
scheduler = get_linear_schedule_with_warmup(
optimizer, num_warmup_steps=args.warmup_steps, num_training_steps=t_total
)
if args.fp16:
try:
from apex import amp
except ImportError:
raise ImportError("Please install apex from https://www.github.com/nvidia/apex to use fp16 training.")
model, optimizer = amp.initialize(model, optimizer, opt_level=args.fp16_opt_level)
# multi-gpu training (should be after apex fp16 initialization)
if args.n_gpu > 1:
model = nn.DataParallel(model)
# Distributed training (should be after apex fp16 initialization)
if args.local_rank != -1:
model = nn.parallel.DistributedDataParallel(
model, device_ids=[args.local_rank], output_device=args.local_rank, find_unused_parameters=True
)
# Train!
logger.info("***** Running training *****")
logger.info(" Num examples = %d", len(train_dataset))
logger.info(" Num Epochs = %d", args.num_train_epochs)
logger.info(" Instantaneous batch size per GPU = %d", args.per_gpu_train_batch_size)
logger.info(
" Total train batch size (w. parallel, distributed & accumulation) = %d",
args.train_batch_size
* args.gradient_accumulation_steps
* (torch.distributed.get_world_size() if args.local_rank != -1 else 1),
)
logger.info(" Gradient Accumulation steps = %d", args.gradient_accumulation_steps)
logger.info(" Total optimization steps = %d", t_total)
global_step = 0
tr_loss, logging_loss = 0.0, 0.0
best_f1, n_no_improve = 0, 0
model.zero_grad()
train_iterator = trange(int(args.num_train_epochs), desc="Epoch", disable=args.local_rank not in [-1, 0])
set_seed(args) # Added here for reproductibility
for _ in train_iterator:
epoch_iterator = tqdm(train_dataloader, desc="Iteration", disable=args.local_rank not in [-1, 0])
for step, batch in enumerate(epoch_iterator):
model.train()
batch = tuple(t.to(args.device) for t in batch)
labels = batch[5]
inputs = {
"input_ids": batch[0],
"input_modal": batch[2],
"attention_mask": batch[1],
"modal_start_tokens": batch[3],
"modal_end_tokens": batch[4],
}
outputs = model(**inputs)
logits = outputs[0] # model outputs are always tuple in transformers (see doc)
loss = criterion(logits, labels)
if args.n_gpu > 1:
loss = loss.mean() # mean() to average on multi-gpu parallel training
if args.gradient_accumulation_steps > 1:
loss = loss / args.gradient_accumulation_steps
if args.fp16:
with amp.scale_loss(loss, optimizer) as scaled_loss:
scaled_loss.backward()
else:
loss.backward()
tr_loss += loss.item()
if (step + 1) % args.gradient_accumulation_steps == 0:
if args.fp16:
nn.utils.clip_grad_norm_(amp.master_params(optimizer), args.max_grad_norm)
else:
nn.utils.clip_grad_norm_(model.parameters(), args.max_grad_norm)
optimizer.step()
scheduler.step() # Update learning rate schedule
model.zero_grad()
global_step += 1
if args.local_rank in [-1, 0] and args.logging_steps > 0 and global_step % args.logging_steps == 0:
logs = {}
if (
args.local_rank == -1 and args.evaluate_during_training
): # Only evaluate when single GPU otherwise metrics may not average well
results = evaluate(args, model, tokenizer, criterion)
for key, value in results.items():
eval_key = "eval_{}".format(key)
logs[eval_key] = value
loss_scalar = (tr_loss - logging_loss) / args.logging_steps
learning_rate_scalar = scheduler.get_lr()[0]
logs["learning_rate"] = learning_rate_scalar
logs["loss"] = loss_scalar
logging_loss = tr_loss
for key, value in logs.items():
tb_writer.add_scalar(key, value, global_step)
print(json.dumps({**logs, **{"step": global_step}}))
if args.local_rank in [-1, 0] and args.save_steps > 0 and global_step % args.save_steps == 0:
# Save model checkpoint
output_dir = os.path.join(args.output_dir, "checkpoint-{}".format(global_step))
if not os.path.exists(output_dir):
os.makedirs(output_dir)
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
torch.save(model_to_save.state_dict(), os.path.join(output_dir, WEIGHTS_NAME))
torch.save(args, os.path.join(output_dir, "training_args.bin"))
logger.info("Saving model checkpoint to %s", output_dir)
if args.max_steps > 0 and global_step > args.max_steps:
epoch_iterator.close()
break
if args.max_steps > 0 and global_step > args.max_steps:
train_iterator.close()
break
if args.local_rank == -1:
results = evaluate(args, model, tokenizer, criterion)
if results["micro_f1"] > best_f1:
best_f1 = results["micro_f1"]
n_no_improve = 0
else:
n_no_improve += 1
if n_no_improve > args.patience:
train_iterator.close()
break
if args.local_rank in [-1, 0]:
tb_writer.close()
return global_step, tr_loss / global_step
def evaluate(args, model, tokenizer, criterion, prefix=""):
# Loop to handle MNLI double evaluation (matched, mis-matched)
eval_output_dir = args.output_dir
eval_dataset = load_examples(args, tokenizer, evaluate=True)
if not os.path.exists(eval_output_dir) and args.local_rank in [-1, 0]:
os.makedirs(eval_output_dir)
args.eval_batch_size = args.per_gpu_eval_batch_size * max(1, args.n_gpu)
# Note that DistributedSampler samples randomly
eval_sampler = SequentialSampler(eval_dataset)
eval_dataloader = DataLoader(
eval_dataset, sampler=eval_sampler, batch_size=args.eval_batch_size, collate_fn=collate_fn
)
# multi-gpu eval
if args.n_gpu > 1 and not isinstance(model, nn.DataParallel):
model = nn.DataParallel(model)
# Eval!
logger.info("***** Running evaluation {} *****".format(prefix))
logger.info(" Num examples = %d", len(eval_dataset))
logger.info(" Batch size = %d", args.eval_batch_size)
eval_loss = 0.0
nb_eval_steps = 0
preds = None
out_label_ids = None
for batch in tqdm(eval_dataloader, desc="Evaluating"):
model.eval()
batch = tuple(t.to(args.device) for t in batch)
with torch.no_grad():
batch = tuple(t.to(args.device) for t in batch)
labels = batch[5]
inputs = {
"input_ids": batch[0],
"input_modal": batch[2],
"attention_mask": batch[1],
"modal_start_tokens": batch[3],
"modal_end_tokens": batch[4],
}
outputs = model(**inputs)
logits = outputs[0] # model outputs are always tuple in transformers (see doc)
tmp_eval_loss = criterion(logits, labels)
eval_loss += tmp_eval_loss.mean().item()
nb_eval_steps += 1
if preds is None:
preds = torch.sigmoid(logits).detach().cpu().numpy() > 0.5
out_label_ids = labels.detach().cpu().numpy()
else:
preds = np.append(preds, torch.sigmoid(logits).detach().cpu().numpy() > 0.5, axis=0)
out_label_ids = np.append(out_label_ids, labels.detach().cpu().numpy(), axis=0)
eval_loss = eval_loss / nb_eval_steps
result = {
"loss": eval_loss,
"macro_f1": f1_score(out_label_ids, preds, average="macro"),
"micro_f1": f1_score(out_label_ids, preds, average="micro"),
}
output_eval_file = os.path.join(eval_output_dir, prefix, "eval_results.txt")
with open(output_eval_file, "w") as writer:
logger.info("***** Eval results {} *****".format(prefix))
for key in sorted(result.keys()):
logger.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
return result
def load_examples(args, tokenizer, evaluate=False):
path = os.path.join(args.data_dir, "dev.jsonl" if evaluate else "train.jsonl")
transforms = get_image_transforms()
labels = get_mmimdb_labels()
dataset = JsonlDataset(path, tokenizer, transforms, labels, args.max_seq_length - args.num_image_embeds - 2)
return dataset
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the .jsonl files for MMIMDB.",
)
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
# Other parameters
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default="",
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default=None,
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--max_seq_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--num_image_embeds", default=1, type=int, help="Number of Image Embeddings from the Image Encoder"
)
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_eval", action="store_true", help="Whether to run eval on the dev set.")
parser.add_argument(
"--evaluate_during_training", action="store_true", help="Rul evaluation during training at each logging step."
)
parser.add_argument(
"--do_lower_case", action="store_true", help="Set this flag if you are using an uncased model."
)
parser.add_argument("--per_gpu_train_batch_size", default=8, type=int, help="Batch size per GPU/CPU for training.")
parser.add_argument(
"--per_gpu_eval_batch_size", default=8, type=int, help="Batch size per GPU/CPU for evaluation."
)
parser.add_argument(
"--gradient_accumulation_steps",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight deay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--max_grad_norm", default=1.0, type=float, help="Max gradient norm.")
parser.add_argument(
"--num_train_epochs", default=3.0, type=float, help="Total number of training epochs to perform."
)
parser.add_argument("--patience", default=5, type=int, help="Patience for Early Stopping.")
parser.add_argument(
"--max_steps",
default=-1,
type=int,
help="If > 0: set total number of training steps to perform. Override num_train_epochs.",
)
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--logging_steps", type=int, default=50, help="Log every X updates steps.")
parser.add_argument("--save_steps", type=int, default=50, help="Save checkpoint every X updates steps.")
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument("--no_cuda", action="store_true", help="Avoid using CUDA when available")
parser.add_argument("--num_workers", type=int, default=8, help="number of worker threads for dataloading")
parser.add_argument(
"--overwrite_output_dir", action="store_true", help="Overwrite the content of the output directory"
)
parser.add_argument(
"--overwrite_cache", action="store_true", help="Overwrite the cached training and evaluation sets"
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O1",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--local_rank", type=int, default=-1, help="For distributed training: local_rank")
parser.add_argument("--server_ip", type=str, default="", help="For distant debugging.")
parser.add_argument("--server_port", type=str, default="", help="For distant debugging.")
args = parser.parse_args()
if (
os.path.exists(args.output_dir)
and os.listdir(args.output_dir)
and args.do_train
and not args.overwrite_output_dir
):
raise ValueError(
"Output directory ({}) already exists and is not empty. Use --overwrite_output_dir to overcome.".format(
args.output_dir
)
)
# Setup distant debugging if needed
if args.server_ip and args.server_port:
# Distant debugging - see https://code.visualstudio.com/docs/python/debugging#_attach-to-a-local-script
import ptvsd
print("Waiting for debugger attach")
ptvsd.enable_attach(address=(args.server_ip, args.server_port), redirect_output=True)
ptvsd.wait_for_attach()
# Setup CUDA, GPU & distributed training
if args.local_rank == -1 or args.no_cuda:
device = torch.device("cuda" if torch.cuda.is_available() and not args.no_cuda else "cpu")
args.n_gpu = 0 if args.no_cuda else torch.cuda.device_count()
else: # Initializes the distributed backend which will take care of sychronizing nodes/GPUs
torch.cuda.set_device(args.local_rank)
device = torch.device("cuda", args.local_rank)
torch.distributed.init_process_group(backend="nccl")
args.n_gpu = 1
args.device = device
# Setup logging
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
level=logging.INFO if args.local_rank in [-1, 0] else logging.WARN,
)
logger.warning(
"Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
args.local_rank,
device,
args.n_gpu,
bool(args.local_rank != -1),
args.fp16,
)
# Set the verbosity to info of the Transformers logger (on main process only):
if is_main_process(args.local_rank):
transformers.utils.logging.set_verbosity_info()
transformers.utils.logging.enable_default_handler()
transformers.utils.logging.enable_explicit_format()
# Set seed
set_seed(args)
# Load pretrained model and tokenizer
if args.local_rank not in [-1, 0]:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
# Setup model
labels = get_mmimdb_labels()
num_labels = len(labels)
transformer_config = AutoConfig.from_pretrained(args.config_name if args.config_name else args.model_name_or_path)
tokenizer = AutoTokenizer.from_pretrained(
args.tokenizer_name if args.tokenizer_name else args.model_name_or_path,
do_lower_case=args.do_lower_case,
cache_dir=args.cache_dir,
)
transformer = AutoModel.from_pretrained(
args.model_name_or_path, config=transformer_config, cache_dir=args.cache_dir
)
img_encoder = ImageEncoder(args)
config = MMBTConfig(transformer_config, num_labels=num_labels)
model = MMBTForClassification(config, transformer, img_encoder)
if args.local_rank == 0:
torch.distributed.barrier() # Make sure only the first process in distributed training will download model & vocab
model.to(args.device)
logger.info("Training/evaluation parameters %s", args)
# Training
if args.do_train:
train_dataset = load_examples(args, tokenizer, evaluate=False)
label_frequences = train_dataset.get_label_frequencies()
label_frequences = [label_frequences[l] for l in labels]
label_weights = (
torch.tensor(label_frequences, device=args.device, dtype=torch.float) / len(train_dataset)
) ** -1
criterion = nn.BCEWithLogitsLoss(pos_weight=label_weights)
global_step, tr_loss = train(args, train_dataset, model, tokenizer, criterion)
logger.info(" global_step = %s, average loss = %s", global_step, tr_loss)
# Saving best-practices: if you use defaults names for the model, you can reload it using from_pretrained()
if args.do_train and (args.local_rank == -1 or torch.distributed.get_rank() == 0):
logger.info("Saving model checkpoint to %s", args.output_dir)
# Save a trained model, configuration and tokenizer using `save_pretrained()`.
# They can then be reloaded using `from_pretrained()`
model_to_save = (
model.module if hasattr(model, "module") else model
) # Take care of distributed/parallel training
torch.save(model_to_save.state_dict(), os.path.join(args.output_dir, WEIGHTS_NAME))
tokenizer.save_pretrained(args.output_dir)
# Good practice: save your training arguments together with the trained model
torch.save(args, os.path.join(args.output_dir, "training_args.bin"))
# Load a trained model and vocabulary that you have fine-tuned
model = MMBTForClassification(config, transformer, img_encoder)
model.load_state_dict(torch.load(os.path.join(args.output_dir, WEIGHTS_NAME)))
tokenizer = AutoTokenizer.from_pretrained(args.output_dir)
model.to(args.device)
# Evaluation
results = {}
if args.do_eval and args.local_rank in [-1, 0]:
checkpoints = [args.output_dir]
if args.eval_all_checkpoints:
checkpoints = [
os.path.dirname(c) for c in sorted(glob.glob(args.output_dir + "/**/" + WEIGHTS_NAME, recursive=True))
]
logger.info("Evaluate the following checkpoints: %s", checkpoints)
for checkpoint in checkpoints:
global_step = checkpoint.split("-")[-1] if len(checkpoints) > 1 else ""
prefix = checkpoint.split("/")[-1] if checkpoint.find("checkpoint") != -1 else ""
model = MMBTForClassification(config, transformer, img_encoder)
model.load_state_dict(torch.load(checkpoint))
model.to(args.device)
result = evaluate(args, model, tokenizer, criterion, prefix=prefix)
result = {k + "_{}".format(global_step): v for k, v in result.items()}
results.update(result)
return results
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/finetune_rag.py | """Finetuning script for RAG models. Adapted from examples.seq2seq.finetune.py"""
import argparse
import logging
import os
import sys
import time
from collections import defaultdict
from pathlib import Path
from typing import Any, Dict, List, Tuple
import numpy as np
import pytorch_lightning as pl
import torch
import torch.distributed as dist
import torch.distributed as torch_distrib
from pytorch_lightning.plugins.training_type import DDPPlugin
from torch.utils.data import DataLoader
from transformers import (
AutoConfig,
AutoTokenizer,
BartForConditionalGeneration,
BatchEncoding,
RagConfig,
RagSequenceForGeneration,
RagTokenForGeneration,
RagTokenizer,
T5ForConditionalGeneration,
)
from transformers import logging as transformers_logging
from transformers.integrations import is_ray_available
if is_ray_available():
import ray
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever
from callbacks_rag import ( # noqa: E402 # isort:skipq
get_checkpoint_callback,
get_early_stopping_callback,
Seq2SeqLoggingCallback,
)
from distributed_pytorch_retriever import RagPyTorchDistributedRetriever # noqa: E402 # isort:skip
from utils_rag import ( # noqa: E402 # isort:skip
calculate_exact_match,
flatten_list,
get_git_info,
is_rag_model,
lmap,
pickle_save,
save_git_info,
save_json,
set_extra_model_params,
Seq2SeqDataset,
)
# need the parent dir module
sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
from lightning_base import BaseTransformer, add_generic_args, generic_train # noqa
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
transformers_logging.set_verbosity_info()
class AttrDict(dict):
def __init__(self, *args, **kwargs):
super(AttrDict, self).__init__(*args, **kwargs)
self.__dict__ = self
class CustomDDP(DDPPlugin):
def init_ddp_connection(self, global_rank=None, world_size=None) -> None:
module = self.model
global_rank = global_rank if global_rank is not None else self.cluster_environment.global_rank()
world_size = world_size if world_size is not None else self.cluster_environment.world_size()
os.environ["MASTER_ADDR"] = self.cluster_environment.master_address()
os.environ["MASTER_PORT"] = str(self.cluster_environment.master_port())
if not torch.distributed.is_initialized():
logger.info(f"initializing ddp: GLOBAL_RANK: {global_rank}, MEMBER: {global_rank + 1}/{world_size}")
torch_distrib.init_process_group(self.torch_distributed_backend, rank=global_rank, world_size=world_size)
if module.is_rag_model:
self.distributed_port = module.hparams.distributed_port
if module.distributed_retriever == "pytorch":
module.model.rag.retriever.init_retrieval(self.distributed_port)
elif module.distributed_retriever == "ray" and global_rank == 0:
# For the Ray retriever, only initialize it once when global
# rank is 0.
module.model.rag.retriever.init_retrieval()
class GenerativeQAModule(BaseTransformer):
mode = "generative_qa"
loss_names = ["loss"]
metric_names = ["em"]
val_metric = "em"
def __init__(self, hparams, **kwargs):
# when loading from a pytorch lightning checkpoint, hparams are passed as dict
if isinstance(hparams, dict):
hparams = AttrDict(hparams)
if hparams.model_type == "rag_sequence":
self.model_class = RagSequenceForGeneration
elif hparams.model_type == "rag_token":
self.model_class = RagTokenForGeneration
elif hparams.model_type == "bart":
self.model_class = BartForConditionalGeneration
else:
self.model_class = T5ForConditionalGeneration
self.is_rag_model = is_rag_model(hparams.model_type)
config_class = RagConfig if self.is_rag_model else AutoConfig
config = config_class.from_pretrained(hparams.model_name_or_path)
# set retriever parameters
config.index_name = hparams.index_name or config.index_name
config.passages_path = hparams.passages_path or config.passages_path
config.index_path = hparams.index_path or config.index_path
config.use_dummy_dataset = hparams.use_dummy_dataset
# set extra_model_params for generator configs and load_model
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "attention_dropout", "dropout")
if self.is_rag_model:
if hparams.prefix is not None:
config.generator.prefix = hparams.prefix
config.label_smoothing = hparams.label_smoothing
hparams, config.generator = set_extra_model_params(extra_model_params, hparams, config.generator)
if hparams.distributed_retriever == "pytorch":
retriever = RagPyTorchDistributedRetriever.from_pretrained(hparams.model_name_or_path, config=config)
elif hparams.distributed_retriever == "ray":
# The Ray retriever needs the handles to the retriever actors.
retriever = RagRayDistributedRetriever.from_pretrained(
hparams.model_name_or_path, hparams.actor_handles, config=config
)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config, retriever=retriever)
prefix = config.question_encoder.prefix
else:
if hparams.prefix is not None:
config.prefix = hparams.prefix
hparams, config = set_extra_model_params(extra_model_params, hparams, config)
model = self.model_class.from_pretrained(hparams.model_name_or_path, config=config)
prefix = config.prefix
tokenizer = (
RagTokenizer.from_pretrained(hparams.model_name_or_path)
if self.is_rag_model
else AutoTokenizer.from_pretrained(hparams.model_name_or_path)
)
super().__init__(hparams, config=config, tokenizer=tokenizer, model=model)
save_git_info(self.hparams.output_dir)
self.output_dir = Path(self.hparams.output_dir)
self.metrics_save_path = Path(self.output_dir) / "metrics.json"
self.hparams_save_path = Path(self.output_dir) / "hparams.pkl"
pickle_save(self.hparams, self.hparams_save_path)
self.step_count = 0
self.metrics = defaultdict(list)
self.dataset_kwargs: dict = {
"data_dir": self.hparams.data_dir,
"max_source_length": self.hparams.max_source_length,
"prefix": prefix or "",
}
n_observations_per_split = {
"train": self.hparams.n_train,
"val": self.hparams.n_val,
"test": self.hparams.n_test,
}
self.n_obs = {k: v if v >= 0 else None for k, v in n_observations_per_split.items()}
self.target_lens = {
"train": self.hparams.max_target_length,
"val": self.hparams.val_max_target_length,
"test": self.hparams.test_max_target_length,
}
assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
self.hparams.git_sha = get_git_info()["repo_sha"]
self.num_workers = hparams.num_workers
self.distributed_port = self.hparams.distributed_port
# For single GPU training, init_ddp_connection is not called.
# So we need to initialize the retrievers here.
if hparams.gpus <= 1:
if hparams.distributed_retriever == "ray":
self.model.retriever.init_retrieval()
elif hparams.distributed_retriever == "pytorch":
self.model.retriever.init_retrieval(self.distributed_port)
self.distributed_retriever = hparams.distributed_retriever
def forward(self, input_ids, **kwargs):
return self.model(input_ids, **kwargs)
def ids_to_clean_text(self, generated_ids: List[int]):
gen_text = self.tokenizer.batch_decode(
generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True
)
return lmap(str.strip, gen_text)
def _step(self, batch: dict) -> Tuple:
source_ids, source_mask, target_ids = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
rag_kwargs = {}
if isinstance(self.model, T5ForConditionalGeneration):
decoder_input_ids = self.model._shift_right(target_ids)
lm_labels = target_ids
elif isinstance(self.model, BartForConditionalGeneration):
decoder_input_ids = target_ids[:, :-1].contiguous()
lm_labels = target_ids[:, 1:].clone()
else:
assert self.is_rag_model
generator = self.model.rag.generator
if isinstance(generator, T5ForConditionalGeneration):
decoder_start_token_id = generator.config.decoder_start_token_id
decoder_input_ids = (
torch.cat(
[torch.tensor([[decoder_start_token_id]] * target_ids.shape[0]).to(target_ids), target_ids],
dim=1,
)
if target_ids.shape[0] < self.target_lens["train"]
else generator._shift_right(target_ids)
)
elif isinstance(generator, BartForConditionalGeneration):
decoder_input_ids = target_ids
lm_labels = decoder_input_ids
rag_kwargs["reduce_loss"] = True
assert decoder_input_ids is not None
outputs = self(
source_ids,
attention_mask=source_mask,
decoder_input_ids=decoder_input_ids,
use_cache=False,
labels=lm_labels,
**rag_kwargs,
)
loss = outputs["loss"]
return (loss,)
@property
def pad(self) -> int:
raise NotImplementedError("pad not implemented")
def training_step(self, batch, batch_idx) -> Dict:
loss_tensors = self._step(batch)
logs = {name: loss.detach() for name, loss in zip(self.loss_names, loss_tensors)}
# tokens per batch
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
logs["tpb"] = (
batch["input_ids"].ne(src_pad_token_id).sum() + batch["decoder_input_ids"].ne(tgt_pad_token_id).sum()
)
return {"loss": loss_tensors[0], "log": logs}
def validation_step(self, batch, batch_idx) -> Dict:
return self._generative_step(batch)
def validation_epoch_end(self, outputs, prefix="val") -> Dict:
self.step_count += 1
losses = {k: torch.stack([x[k] for x in outputs]).mean() for k in self.loss_names}
loss = losses["loss"]
gen_metrics = {
k: np.array([x[k] for x in outputs]).mean() for k in self.metric_names + ["gen_time", "gen_len"]
}
metrics_tensor: torch.FloatTensor = torch.tensor(gen_metrics[self.val_metric]).type_as(loss)
gen_metrics.update({k: v.item() for k, v in losses.items()})
# fix for https://github.com/PyTorchLightning/pytorch-lightning/issues/2424
if dist.is_initialized():
dist.all_reduce(metrics_tensor, op=dist.ReduceOp.SUM)
metrics_tensor = metrics_tensor / dist.get_world_size()
gen_metrics.update({self.val_metric: metrics_tensor.item()})
losses.update(gen_metrics)
metrics = {f"{prefix}_avg_{k}": x for k, x in losses.items()}
metrics["step_count"] = self.step_count
self.save_metrics(metrics, prefix) # writes to self.metrics_save_path
preds = flatten_list([x["preds"] for x in outputs])
return {"log": metrics, "preds": preds, f"{prefix}_loss": loss, f"{prefix}_{self.val_metric}": metrics_tensor}
def save_metrics(self, latest_metrics, type_path) -> None:
self.metrics[type_path].append(latest_metrics)
save_json(self.metrics, self.metrics_save_path)
def calc_generative_metrics(self, preds, target) -> Dict:
return calculate_exact_match(preds, target)
def _generative_step(self, batch: dict) -> dict:
start_time = time.time()
batch = BatchEncoding(batch).to(device=self.model.device)
generated_ids = self.model.generate(
batch["input_ids"],
attention_mask=batch["attention_mask"],
do_deduplication=False, # rag specific parameter
use_cache=True,
min_length=1,
max_length=self.target_lens["val"],
)
gen_time = (time.time() - start_time) / batch["input_ids"].shape[0]
preds: List[str] = self.ids_to_clean_text(generated_ids)
target: List[str] = self.ids_to_clean_text(batch["decoder_input_ids"])
loss_tensors = self._step(batch)
base_metrics = dict(zip(self.loss_names, loss_tensors))
gen_metrics: Dict = self.calc_generative_metrics(preds, target)
summ_len = np.mean(lmap(len, generated_ids))
base_metrics.update(gen_time=gen_time, gen_len=summ_len, preds=preds, target=target, **gen_metrics)
return base_metrics
def test_step(self, batch, batch_idx):
return self._generative_step(batch)
def test_epoch_end(self, outputs):
return self.validation_epoch_end(outputs, prefix="test")
def get_dataset(self, type_path) -> Seq2SeqDataset:
n_obs = self.n_obs[type_path]
max_target_length = self.target_lens[type_path]
dataset = Seq2SeqDataset(
self.tokenizer,
type_path=type_path,
n_obs=n_obs,
max_target_length=max_target_length,
**self.dataset_kwargs,
)
return dataset
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
dataset = self.get_dataset(type_path)
dataloader = DataLoader(
dataset,
batch_size=batch_size,
collate_fn=dataset.collate_fn,
shuffle=shuffle,
num_workers=self.num_workers,
)
return dataloader
def train_dataloader(self) -> DataLoader:
dataloader = self.get_dataloader("train", batch_size=self.hparams.train_batch_size, shuffle=True)
return dataloader
def val_dataloader(self) -> DataLoader:
return self.get_dataloader("val", batch_size=self.hparams.eval_batch_size)
def test_dataloader(self) -> DataLoader:
return self.get_dataloader("test", batch_size=self.hparams.eval_batch_size)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("checkpoint{}".format(self.step_count))
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
BaseTransformer.add_model_specific_args(parser, root_dir)
add_generic_args(parser, root_dir)
parser.add_argument(
"--max_source_length",
default=128,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--val_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument(
"--test_max_target_length",
default=25,
type=int,
help=(
"The maximum total input sequence length after tokenization. Sequences longer "
"than this will be truncated, sequences shorter will be padded."
),
)
parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--n_test", type=int, default=-1, required=False, help="# examples. -1 means use all.")
parser.add_argument("--label_smoothing", type=float, default=0.0, required=False)
parser.add_argument(
"--prefix",
type=str,
default=None,
help="Prefix added at the beginning of each text, typically used with T5-based models.",
)
parser.add_argument(
"--early_stopping_patience",
type=int,
default=-1,
required=False,
help=(
"-1 means never early stop. early_stopping_patience is measured in validation checks, not epochs. So"
" val_check_interval will effect it."
),
)
parser.add_argument(
"--distributed-port", type=int, default=-1, required=False, help="Port number for distributed training."
)
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart", "t5"],
type=str,
help=(
"RAG model type: sequence or token, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
return parser
@staticmethod
def add_retriever_specific_args(parser):
parser.add_argument(
"--index_name",
type=str,
default=None,
help=(
"Name of the index to use: 'hf' for a canonical dataset from the datasets library (default), 'custom'"
" for a local index, or 'legacy' for the orignal one)"
),
)
parser.add_argument(
"--passages_path",
type=str,
default=None,
help=(
"Path to the dataset of passages for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--index_path",
type=str,
default=None,
help=(
"Path to the faiss index for custom index. More info about custom indexes in the RagRetriever"
" documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
parser.add_argument(
"--distributed_retriever",
choices=["ray", "pytorch"],
type=str,
default="pytorch",
help=(
"What implementation to use for distributed retriever? If "
"pytorch is selected, the index is loaded on training "
"worker 0, and torch.distributed is used to handle "
"communication between training worker 0, and the other "
"training workers. If ray is selected, the Ray library is "
"used to create load the index on separate processes, "
"and Ray handles the communication between the training "
"workers and the retrieval actors."
),
)
parser.add_argument(
"--use_dummy_dataset",
type=bool,
default=False,
help=(
"Whether to use the dummy version of the dataset index. More info about custom indexes in the"
" RagRetriever documentation as well as in `examples/rag/use_own_knowledge_dataset.py`"
),
)
return parser
@staticmethod
def add_ray_specific_args(parser):
# Ray cluster address.
parser.add_argument(
"--ray-address",
default="auto",
type=str,
help=(
"The address of the Ray cluster to connect to. If not "
"specified, Ray will attempt to automatically detect the "
"cluster. Has no effect if pytorch is used as the distributed "
"retriever."
),
)
parser.add_argument(
"--num_retrieval_workers",
type=int,
default=1,
help=(
"The number of retrieval actors to use when Ray is selected "
"for the distributed retriever. Has no effect when "
"distributed_retriever is set to pytorch."
),
)
return parser
def main(args=None, model=None) -> GenerativeQAModule:
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
args = args or parser.parse_args()
Path(args.output_dir).mkdir(exist_ok=True)
named_actors = []
if args.distributed_retriever == "ray" and args.gpus > 1:
if not is_ray_available():
raise RuntimeError("Please install Ray to use the Ray distributed retriever.")
# Connect to an existing Ray cluster.
try:
ray.init(address=args.ray_address, namespace="rag")
except (ConnectionError, ValueError):
logger.warning(
"Connection to Ray cluster failed. Make sure a Ray "
"cluster is running by either using Ray's cluster "
"launcher (`ray up`) or by manually starting Ray on "
"each node via `ray start --head` for the head node "
"and `ray start --address='<ip address>:6379'` for "
"additional nodes. See "
"https://docs.ray.io/en/master/cluster/index.html "
"for more info."
)
raise
# Create Ray actors only for rank 0.
if ("LOCAL_RANK" not in os.environ or int(os.environ["LOCAL_RANK"]) == 0) and (
"NODE_RANK" not in os.environ or int(os.environ["NODE_RANK"]) == 0
):
remote_cls = ray.remote(RayRetriever)
named_actors = [
remote_cls.options(name="retrieval_worker_{}".format(i)).remote()
for i in range(args.num_retrieval_workers)
]
else:
logger.info(
"Getting named actors for NODE_RANK {}, LOCAL_RANK {}".format(
os.environ["NODE_RANK"], os.environ["LOCAL_RANK"]
)
)
named_actors = [ray.get_actor("retrieval_worker_{}".format(i)) for i in range(args.num_retrieval_workers)]
args.actor_handles = named_actors
assert args.actor_handles == named_actors
if model is None:
model: GenerativeQAModule = GenerativeQAModule(args)
dataset = Path(args.data_dir).name
if (
args.logger_name == "default"
or args.fast_dev_run
or str(args.output_dir).startswith("/tmp")
or str(args.output_dir).startswith("/var")
):
training_logger = True # don't pollute wandb logs unnecessarily
elif args.logger_name == "wandb":
from pytorch_lightning.loggers import WandbLogger
project = os.environ.get("WANDB_PROJECT", dataset)
training_logger = WandbLogger(name=model.output_dir.name, project=project)
elif args.logger_name == "wandb_shared":
from pytorch_lightning.loggers import WandbLogger
training_logger = WandbLogger(name=model.output_dir.name, project=f"hf_{dataset}")
es_callback = (
get_early_stopping_callback(model.val_metric, args.early_stopping_patience)
if args.early_stopping_patience >= 0
else False
)
trainer: pl.Trainer = generic_train(
model,
args,
logging_callback=Seq2SeqLoggingCallback(),
checkpoint_callback=get_checkpoint_callback(args.output_dir, model.val_metric),
early_stopping_callback=es_callback,
logger=training_logger,
custom_ddp_plugin=CustomDDP() if args.gpus > 1 else None,
profiler=pl.profiler.AdvancedProfiler() if args.profile else None,
)
pickle_save(model.hparams, model.output_dir / "hparams.pkl")
if not args.do_predict:
return model
# test() without a model tests using the best checkpoint automatically
trainer.test()
return model
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser = pl.Trainer.add_argparse_args(parser)
parser = GenerativeQAModule.add_model_specific_args(parser, os.getcwd())
parser = GenerativeQAModule.add_retriever_specific_args(parser)
parser = GenerativeQAModule.add_ray_specific_args(parser)
# Pytorch Lightning Profiler
parser.add_argument(
"--profile",
action="store_true",
help="If True, use pytorch_lightning.profiler.AdvancedProfiler to profile the Trainer.",
)
args = parser.parse_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/utils_rag.py | import itertools
import json
import linecache
import os
import pickle
import re
import socket
import string
from collections import Counter
from logging import getLogger
from pathlib import Path
from typing import Callable, Dict, Iterable, List
import git
import torch
from torch.utils.data import Dataset
from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=True, return_tensors="pt"):
extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) and not line.startswith(" ") else {}
tokenizer.padding_side = padding_side
return tokenizer(
[line],
max_length=max_length,
padding="max_length" if pad_to_max_length else None,
truncation=True,
return_tensors=return_tensors,
add_special_tokens=True,
**extra_kw,
)
def trim_batch(
input_ids,
pad_token_id,
attention_mask=None,
):
"""Remove columns that are populated exclusively by pad_token_id"""
keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
if attention_mask is None:
return input_ids[:, keep_column_mask]
else:
return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
class Seq2SeqDataset(Dataset):
def __init__(
self,
tokenizer,
data_dir,
max_source_length,
max_target_length,
type_path="train",
n_obs=None,
src_lang=None,
tgt_lang=None,
prefix="",
):
super().__init__()
self.src_file = Path(data_dir).joinpath(type_path + ".source")
self.tgt_file = Path(data_dir).joinpath(type_path + ".target")
self.src_lens = self.get_char_lens(self.src_file)
self.max_source_length = max_source_length
self.max_target_length = max_target_length
assert min(self.src_lens) > 0, f"found empty line in {self.src_file}"
self.tokenizer = tokenizer
self.prefix = prefix
if n_obs is not None:
self.src_lens = self.src_lens[:n_obs]
self.src_lang = src_lang
self.tgt_lang = tgt_lang
def __len__(self):
return len(self.src_lens)
def __getitem__(self, index) -> Dict[str, torch.Tensor]:
index = index + 1 # linecache starts at 1
source_line = self.prefix + linecache.getline(str(self.src_file), index).rstrip("\n")
tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
assert source_line, f"empty source line for index {index}"
assert tgt_line, f"empty tgt line for index {index}"
# Need to add eos token manually for T5
if isinstance(self.tokenizer, T5Tokenizer):
source_line += self.tokenizer.eos_token
tgt_line += self.tokenizer.eos_token
# Pad source and target to the right
source_tokenizer = (
self.tokenizer.question_encoder if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
)
target_tokenizer = self.tokenizer.generator if isinstance(self.tokenizer, RagTokenizer) else self.tokenizer
source_inputs = encode_line(source_tokenizer, source_line, self.max_source_length, "right")
target_inputs = encode_line(target_tokenizer, tgt_line, self.max_target_length, "right")
source_ids = source_inputs["input_ids"].squeeze()
target_ids = target_inputs["input_ids"].squeeze()
src_mask = source_inputs["attention_mask"].squeeze()
return {
"input_ids": source_ids,
"attention_mask": src_mask,
"decoder_input_ids": target_ids,
}
@staticmethod
def get_char_lens(data_file):
return [len(x) for x in Path(data_file).open().readlines()]
def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
input_ids = torch.stack([x["input_ids"] for x in batch])
masks = torch.stack([x["attention_mask"] for x in batch])
target_ids = torch.stack([x["decoder_input_ids"] for x in batch])
tgt_pad_token_id = (
self.tokenizer.generator.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
src_pad_token_id = (
self.tokenizer.question_encoder.pad_token_id
if isinstance(self.tokenizer, RagTokenizer)
else self.tokenizer.pad_token_id
)
y = trim_batch(target_ids, tgt_pad_token_id)
source_ids, source_mask = trim_batch(input_ids, src_pad_token_id, attention_mask=masks)
batch = {
"input_ids": source_ids,
"attention_mask": source_mask,
"decoder_input_ids": y,
}
return batch
logger = getLogger(__name__)
def flatten_list(summary_ids: List[List]):
return list(itertools.chain.from_iterable(summary_ids))
def save_git_info(folder_path: str) -> None:
"""Save git information to output_dir/git_log.json"""
repo_infos = get_git_info()
save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
def save_json(content, path, indent=4, **json_dump_kwargs):
with open(path, "w") as f:
json.dump(content, f, indent=indent, **json_dump_kwargs)
def load_json(path):
with open(path) as f:
return json.load(f)
def get_git_info():
repo = git.Repo(search_parent_directories=True)
repo_infos = {
"repo_id": str(repo),
"repo_sha": str(repo.head.object.hexsha),
"repo_branch": str(repo.active_branch),
"hostname": str(socket.gethostname()),
}
return repo_infos
def lmap(f: Callable, x: Iterable) -> List:
"""list(map(f, x))"""
return list(map(f, x))
def pickle_save(obj, path):
"""pickle.dump(obj, path)"""
with open(path, "wb") as f:
return pickle.dump(obj, f)
def normalize_answer(s):
"""Lower text and remove punctuation, articles and extra whitespace."""
def remove_articles(text):
return re.sub(r"\b(a|an|the)\b", " ", text)
def white_space_fix(text):
return " ".join(text.split())
def remove_punc(text):
exclude = set(string.punctuation)
return "".join(ch for ch in text if ch not in exclude)
def lower(text):
return text.lower()
return white_space_fix(remove_articles(remove_punc(lower(s))))
def f1_score(prediction, ground_truth):
prediction_tokens = normalize_answer(prediction).split()
ground_truth_tokens = normalize_answer(ground_truth).split()
common = Counter(prediction_tokens) & Counter(ground_truth_tokens)
num_same = sum(common.values())
if num_same == 0:
return 0
precision = 1.0 * num_same / len(prediction_tokens)
recall = 1.0 * num_same / len(ground_truth_tokens)
f1 = (2 * precision * recall) / (precision + recall)
return f1
def exact_match_score(prediction, ground_truth):
return normalize_answer(prediction) == normalize_answer(ground_truth)
def calculate_exact_match(output_lns: List[str], reference_lns: List[str]) -> Dict:
assert len(output_lns) == len(reference_lns)
em = 0
for hypo, pred in zip(output_lns, reference_lns):
em += exact_match_score(hypo, pred)
if len(output_lns) > 0:
em /= len(output_lns)
return {"em": em}
def is_rag_model(model_prefix):
return model_prefix.startswith("rag")
def set_extra_model_params(extra_params, hparams, config):
equivalent_param = {p: p for p in extra_params}
# T5 models don't have `dropout` param, they have `dropout_rate` instead
equivalent_param["dropout"] = "dropout_rate"
for p in extra_params:
if getattr(hparams, p, None):
if not hasattr(config, p) and not hasattr(config, equivalent_param[p]):
logger.info("config doesn't have a `{}` attribute".format(p))
delattr(hparams, p)
continue
set_p = p if hasattr(config, p) else equivalent_param[p]
setattr(config, set_p, getattr(hparams, p))
delattr(hparams, p)
return hparams, config
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/requirements.txt | faiss-cpu >= 1.6.3
datasets >= 1.0.1
psutil >= 5.7.0
torch >= 1.4.0
ray >= 1.10.0
pytorch-lightning >= 1.5.10, <=1.6.0
transformers
GitPython | 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/callbacks_rag.py | import logging
from pathlib import Path
import numpy as np
import pytorch_lightning as pl
import torch
from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
from pytorch_lightning.utilities import rank_zero_only
from utils_rag import save_json
def count_trainable_parameters(model):
model_parameters = filter(lambda p: p.requires_grad, model.parameters())
params = sum([np.prod(p.size()) for p in model_parameters])
return params
logger = logging.getLogger(__name__)
def get_checkpoint_callback(output_dir, metric):
"""Saves the best model by validation EM score."""
if metric == "rouge2":
exp = "{val_avg_rouge2:.4f}-{step_count}"
elif metric == "bleu":
exp = "{val_avg_bleu:.4f}-{step_count}"
elif metric == "em":
exp = "{val_avg_em:.4f}-{step_count}"
else:
raise NotImplementedError(
f"seq2seq callbacks only support rouge2 and bleu, got {metric}, You can make your own by adding to this"
" function."
)
checkpoint_callback = ModelCheckpoint(
dirpath=output_dir,
filename=exp,
monitor=f"val_{metric}",
mode="max",
save_top_k=3,
every_n_epochs=1, # maybe save a checkpoint every time val is run, not just end of epoch.
)
return checkpoint_callback
def get_early_stopping_callback(metric, patience):
return EarlyStopping(
monitor=f"val_{metric}", # does this need avg?
mode="min" if "loss" in metric else "max",
patience=patience,
verbose=True,
)
class Seq2SeqLoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
pl_module.logger.log_metrics(lrs)
@rank_zero_only
def _write_logs(
self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
) -> None:
logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
metrics = trainer.callback_metrics
trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
# Log results
od = Path(pl_module.hparams.output_dir)
if type_path == "test":
results_file = od / "test_results.txt"
generations_file = od / "test_generations.txt"
else:
# this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
# If people want this it will be easy enough to add back.
results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
results_file.parent.mkdir(exist_ok=True)
generations_file.parent.mkdir(exist_ok=True)
with open(results_file, "a+") as writer:
for key in sorted(metrics):
if key in ["log", "progress_bar", "preds"]:
continue
val = metrics[key]
if isinstance(val, torch.Tensor):
val = val.item()
msg = f"{key}: {val:.6f}\n"
writer.write(msg)
if not save_generations:
return
if "preds" in metrics:
content = "\n".join(metrics["preds"])
generations_file.open("w+").write(content)
@rank_zero_only
def on_train_start(self, trainer, pl_module):
try:
npars = pl_module.model.model.num_parameters()
except AttributeError:
npars = pl_module.model.num_parameters()
n_trainable_pars = count_trainable_parameters(pl_module)
# mp stands for million parameters
trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
@rank_zero_only
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
save_json(pl_module.metrics, pl_module.metrics_save_path)
return self._write_logs(trainer, pl_module, "test")
@rank_zero_only
def on_validation_end(self, trainer: pl.Trainer, pl_module):
save_json(pl_module.metrics, pl_module.metrics_save_path)
# Uncommenting this will save val generations
# return self._write_logs(trainer, pl_module, "valid")
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/parse_dpr_relevance_data.py | """
This script reads DPR retriever training data and parses each datapoint. We save a line per datapoint.
Each line consists of the query followed by a tab-separated list of Wikipedia page titles constituting
positive contexts for a given query.
"""
import argparse
import json
from tqdm import tqdm
def main():
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--src_path",
type=str,
default="biencoder-nq-dev.json",
help="Path to raw DPR training data",
)
parser.add_argument(
"--evaluation_set",
type=str,
help="where to store parsed evaluation_set file",
)
parser.add_argument(
"--gold_data_path",
type=str,
help="where to store parsed gold_data_path file",
)
args = parser.parse_args()
with open(args.src_path, "r") as src_file, open(args.evaluation_set, "w") as eval_file, open(
args.gold_data_path, "w"
) as gold_file:
dpr_records = json.load(src_file)
for dpr_record in tqdm(dpr_records):
question = dpr_record["question"]
contexts = [context["title"] for context in dpr_record["positive_ctxs"]]
eval_file.write(question + "\n")
gold_file.write("\t".join(contexts) + "\n")
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/finetune_rag_ray.sh | # Sample script to finetune RAG using Ray for distributed retrieval.
# Add parent directory to python path to access lightning_base.py
export PYTHONPATH="../":"${PYTHONPATH}"
# Start a single-node Ray cluster.
ray start --head
# A sample finetuning run, you need to specify data_dir, output_dir and model_name_or_path
# run ./examples/rag/finetune_rag_ray.sh --help to see all the possible options
python examples/rag/finetune_rag.py \
--data_dir $DATA_DIR \
--output_dir $OUTPUT_DIR \
--model_name_or_path $MODEL_NAME_OR_PATH \
--model_type rag_sequence \
--fp16 \
--gpus 8 \
--profile \
--do_train \
--do_predict \
--n_val -1 \
--train_batch_size 8 \
--eval_batch_size 1 \
--max_source_length 128 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-05 \
--num_train_epochs 100 \
--warmup_steps 500 \
--gradient_accumulation_steps 1 \
--distributed_retriever ray \
--num_retrieval_workers 4
# Stop the Ray cluster.
ray stop
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/lightning_base.py | import argparse
import logging
import os
from pathlib import Path
from typing import Any, Dict
import pytorch_lightning as pl
from pytorch_lightning.utilities import rank_zero_info
from transformers import (
AdamW,
AutoConfig,
AutoModel,
AutoModelForPreTraining,
AutoModelForQuestionAnswering,
AutoModelForSeq2SeqLM,
AutoModelForSequenceClassification,
AutoModelForTokenClassification,
AutoModelWithLMHead,
AutoTokenizer,
PretrainedConfig,
PreTrainedTokenizer,
)
from transformers.optimization import (
Adafactor,
get_cosine_schedule_with_warmup,
get_cosine_with_hard_restarts_schedule_with_warmup,
get_linear_schedule_with_warmup,
get_polynomial_decay_schedule_with_warmup,
)
from transformers.utils.versions import require_version
logger = logging.getLogger(__name__)
require_version("pytorch_lightning>=1.0.4")
MODEL_MODES = {
"base": AutoModel,
"sequence-classification": AutoModelForSequenceClassification,
"question-answering": AutoModelForQuestionAnswering,
"pretraining": AutoModelForPreTraining,
"token-classification": AutoModelForTokenClassification,
"language-modeling": AutoModelWithLMHead,
"summarization": AutoModelForSeq2SeqLM,
"translation": AutoModelForSeq2SeqLM,
}
# update this and the import above to support new schedulers from transformers.optimization
arg_to_scheduler = {
"linear": get_linear_schedule_with_warmup,
"cosine": get_cosine_schedule_with_warmup,
"cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
"polynomial": get_polynomial_decay_schedule_with_warmup,
# '': get_constant_schedule, # not supported for now
# '': get_constant_schedule_with_warmup, # not supported for now
}
arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
arg_to_scheduler_metavar = "{" + ", ".join(arg_to_scheduler_choices) + "}"
class BaseTransformer(pl.LightningModule):
def __init__(
self,
hparams: argparse.Namespace,
num_labels=None,
mode="base",
config=None,
tokenizer=None,
model=None,
**config_kwargs,
):
"""Initialize a model, tokenizer and config."""
super().__init__()
# TODO: move to self.save_hyperparameters()
# self.save_hyperparameters()
# can also expand arguments into trainer signature for easier reading
self.save_hyperparameters(hparams)
self.step_count = 0
self.output_dir = Path(self.hparams.output_dir)
cache_dir = self.hparams.cache_dir if self.hparams.cache_dir else None
if config is None:
self.config = AutoConfig.from_pretrained(
self.hparams.config_name if self.hparams.config_name else self.hparams.model_name_or_path,
**({"num_labels": num_labels} if num_labels is not None else {}),
cache_dir=cache_dir,
**config_kwargs,
)
else:
self.config: PretrainedConfig = config
extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
for p in extra_model_params:
if getattr(self.hparams, p, None):
assert hasattr(self.config, p), f"model config doesn't have a `{p}` attribute"
setattr(self.config, p, getattr(self.hparams, p))
if tokenizer is None:
self.tokenizer = AutoTokenizer.from_pretrained(
self.hparams.tokenizer_name if self.hparams.tokenizer_name else self.hparams.model_name_or_path,
cache_dir=cache_dir,
)
else:
self.tokenizer: PreTrainedTokenizer = tokenizer
self.model_type = MODEL_MODES[mode]
if model is None:
self.model = self.model_type.from_pretrained(
self.hparams.model_name_or_path,
from_tf=bool(".ckpt" in self.hparams.model_name_or_path),
config=self.config,
cache_dir=cache_dir,
)
else:
self.model = model
def load_hf_checkpoint(self, *args, **kwargs):
self.model = self.model_type.from_pretrained(*args, **kwargs)
def get_lr_scheduler(self):
get_schedule_func = arg_to_scheduler[self.hparams.lr_scheduler]
scheduler = get_schedule_func(
self.opt, num_warmup_steps=self.hparams.warmup_steps, num_training_steps=self.total_steps()
)
scheduler = {"scheduler": scheduler, "interval": "step", "frequency": 1}
return scheduler
def configure_optimizers(self):
"""Prepare optimizer and schedule (linear warmup and decay)"""
model = self.model
no_decay = ["bias", "LayerNorm.weight"]
optimizer_grouped_parameters = [
{
"params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)],
"weight_decay": self.hparams.weight_decay,
},
{
"params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)],
"weight_decay": 0.0,
},
]
if self.hparams.adafactor:
optimizer = Adafactor(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, scale_parameter=False, relative_step=False
)
else:
optimizer = AdamW(
optimizer_grouped_parameters, lr=self.hparams.learning_rate, eps=self.hparams.adam_epsilon
)
self.opt = optimizer
scheduler = self.get_lr_scheduler()
return [optimizer], [scheduler]
def test_step(self, batch, batch_nb):
return self.validation_step(batch, batch_nb)
def test_epoch_end(self, outputs):
return self.validation_end(outputs)
def total_steps(self) -> int:
"""The number of total training steps that will be run. Used for lr scheduler purposes."""
num_devices = max(1, self.hparams.gpus) # TODO: consider num_tpu_cores
effective_batch_size = self.hparams.train_batch_size * self.hparams.accumulate_grad_batches * num_devices
return (self.dataset_size / effective_batch_size) * self.hparams.max_epochs
def setup(self, stage):
if stage == "test":
self.dataset_size = len(self.test_dataloader().dataset)
else:
self.train_loader = self.get_dataloader("train", self.hparams.train_batch_size, shuffle=True)
self.dataset_size = len(self.train_dataloader().dataset)
def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False):
raise NotImplementedError("You must implement this for your task")
def train_dataloader(self):
return self.train_loader
def val_dataloader(self):
return self.get_dataloader("dev", self.hparams.eval_batch_size, shuffle=False)
def test_dataloader(self):
return self.get_dataloader("test", self.hparams.eval_batch_size, shuffle=False)
def _feature_file(self, mode):
return os.path.join(
self.hparams.data_dir,
"cached_{}_{}_{}".format(
mode,
list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
str(self.hparams.max_seq_length),
),
)
@pl.utilities.rank_zero_only
def on_save_checkpoint(self, checkpoint: Dict[str, Any]) -> None:
save_path = self.output_dir.joinpath("best_tfmr")
self.model.config.save_step = self.step_count
self.model.save_pretrained(save_path)
self.tokenizer.save_pretrained(save_path)
@staticmethod
def add_model_specific_args(parser, root_dir):
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained model or model identifier from huggingface.co/models",
)
parser.add_argument(
"--config_name", default="", type=str, help="Pretrained config name or path if not the same as model_name"
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Pretrained tokenizer name or path if not the same as model_name",
)
parser.add_argument(
"--cache_dir",
default="",
type=str,
help="Where do you want to store the pre-trained models downloaded from huggingface.co",
)
parser.add_argument(
"--encoder_layerdrop",
type=float,
help="Encoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--decoder_layerdrop",
type=float,
help="Decoder layer dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--dropout",
type=float,
help="Dropout probability (Optional). Goes into model.config",
)
parser.add_argument(
"--attention_dropout",
type=float,
help="Attention dropout probability (Optional). Goes into model.config",
)
parser.add_argument("--learning_rate", default=5e-5, type=float, help="The initial learning rate for Adam.")
parser.add_argument(
"--lr_scheduler",
default="linear",
choices=arg_to_scheduler_choices,
metavar=arg_to_scheduler_metavar,
type=str,
help="Learning rate scheduler",
)
parser.add_argument("--weight_decay", default=0.0, type=float, help="Weight decay if we apply some.")
parser.add_argument("--adam_epsilon", default=1e-8, type=float, help="Epsilon for Adam optimizer.")
parser.add_argument("--warmup_steps", default=0, type=int, help="Linear warmup over warmup_steps.")
parser.add_argument("--num_workers", default=4, type=int, help="kwarg passed to DataLoader")
parser.add_argument("--num_train_epochs", dest="max_epochs", default=3, type=int)
parser.add_argument("--train_batch_size", default=32, type=int)
parser.add_argument("--eval_batch_size", default=32, type=int)
parser.add_argument("--adafactor", action="store_true")
class InitCallback(pl.Callback):
# This method is better that using a custom DDP plugging with the latest pytorch-lightning (@shamanez)
def on_sanity_check_start(self, trainer, pl_module):
if (
trainer.is_global_zero and trainer.global_rank == 0
): # we initialize the retriever only on master worker with RAY. In new pytorch-lightning accelorators are removed.
pl_module.model.rag.retriever.init_retrieval() # better to use hook functions.
class LoggingCallback(pl.Callback):
def on_batch_end(self, trainer, pl_module):
lr_scheduler = trainer.lr_schedulers[0]["scheduler"]
lrs = {f"lr_group_{i}": lr for i, lr in enumerate(lr_scheduler.get_lr())}
pl_module.logger.log_metrics(lrs)
def on_validation_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Validation results *****")
metrics = trainer.callback_metrics
# Log results
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
rank_zero_info("***** Test results *****")
metrics = trainer.callback_metrics
# Log and save results to file
output_test_results_file = os.path.join(pl_module.hparams.output_dir, "test_results.txt")
with open(output_test_results_file, "w") as writer:
for key in sorted(metrics):
if key not in ["log", "progress_bar"]:
rank_zero_info("{} = {}\n".format(key, str(metrics[key])))
writer.write("{} = {}\n".format(key, str(metrics[key])))
def add_generic_args(parser, root_dir) -> None:
# To allow all pl args uncomment the following line
# parser = pl.Trainer.add_argparse_args(parser)
parser.add_argument(
"--output_dir",
default=None,
type=str,
required=True,
help="The output directory where the model predictions and checkpoints will be written.",
)
parser.add_argument(
"--fp16",
action="store_true",
help="Whether to use 16-bit (mixed) precision (through NVIDIA apex) instead of 32-bit",
)
parser.add_argument(
"--fp16_opt_level",
type=str,
default="O2",
help=(
"For fp16: Apex AMP optimization level selected in ['O0', 'O1', 'O2', and 'O3']. "
"See details at https://nvidia.github.io/apex/amp.html"
),
)
parser.add_argument("--n_tpu_cores", dest="tpu_cores", type=int)
parser.add_argument("--max_grad_norm", dest="gradient_clip_val", default=1.0, type=float, help="Max gradient norm")
parser.add_argument("--do_train", action="store_true", help="Whether to run training.")
parser.add_argument("--do_predict", action="store_true", help="Whether to run predictions on the test set.")
parser.add_argument(
"--gradient_accumulation_steps",
dest="accumulate_grad_batches",
type=int,
default=1,
help="Number of updates steps to accumulate before performing a backward/update pass.",
)
parser.add_argument("--seed", type=int, default=42, help="random seed for initialization")
parser.add_argument(
"--data_dir",
default=None,
type=str,
required=True,
help="The input data dir. Should contain the training files for the CoNLL-2003 NER task.",
)
def generic_train(
model: BaseTransformer,
args: argparse.Namespace,
early_stopping_callback=None,
logger=True, # can pass WandbLogger() here
custom_ddp_plugin=None,
extra_callbacks=[],
checkpoint_callback=None,
logging_callback=None,
**extra_train_kwargs,
):
pl.seed_everything(args.seed)
# init model
odir = Path(model.hparams.output_dir)
odir.mkdir(exist_ok=True)
# add custom checkpoints
if checkpoint_callback is None:
checkpoint_callback = pl.callbacks.ModelCheckpoint(
filepath=args.output_dir, prefix="checkpoint", monitor="val_loss", mode="min", save_top_k=1
)
if early_stopping_callback:
extra_callbacks.append(early_stopping_callback)
if logging_callback is None:
logging_callback = LoggingCallback()
train_params = {}
# TODO: remove with PyTorch 1.6 since pl uses native amp
if args.fp16:
train_params["precision"] = 16
# train_params["amp_level"] = args.fp16_opt_level
if args.gpus > 1:
train_params["accelerator"] = "auto" # "ddp"
train_params["strategy"] = "ddp"
train_params["accumulate_grad_batches"] = args.accumulate_grad_batches
train_params["profiler"] = None # extra_train_kwargs.get("profiler", None) #get unwanted logs
train_params["devices"] = "auto"
trainer = pl.Trainer.from_argparse_args(
args,
weights_summary=None,
callbacks=[logging_callback] + extra_callbacks + [checkpoint_callback] + [InitCallback()],
# plugins=[custom_ddp_plugin],
logger=logger,
**train_params,
)
if args.do_train:
trainer.fit(model)
return trainer
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/__init__.py | import os
import sys
sys.path.insert(1, os.path.dirname(os.path.realpath(__file__)))
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/README.md | # Intro
Authors: @patrickvonplaten and @lhoestq
Aimed at tackling the knowledge-intensive NLP tasks (think tasks a human wouldn't be expected to solve without access to external knowledge sources), RAG models are seq2seq models with access to a retrieval mechanism providing relevant context documents at training and evaluation time.
A RAG model encapsulates two core components: a question encoder and a generator.
During a forward pass, we encode the input with the question encoder and pass it
to the retriever to extract relevant context documents. The documents are then prepended to the input.
Such contextualized inputs are passed to the generator.
Read more about RAG at https://arxiv.org/abs/2005.11401.
# Note
⚠️ This project should be run with pytorch-lightning==1.3.1 which has a potential security vulnerability
# Finetuning
Our finetuning logic is based on scripts from [`examples/legacy/seq2seq`](https://github.com/huggingface/transformers/tree/main/examples/legacy/seq2seq). We accept training data in the same format as specified there - we expect a directory consisting of 6 text files:
```bash
train.source
train.target
val.source
val.target
test.source
test.target
```
A sample finetuning command (run ` ./examples/research_projects/rag/finetune_rag.py --help` to list all available options):
```bash
python examples/research_projects/rag/finetune_rag.py \
--data_dir $DATA_DIR \
--output_dir $OUTPUT_DIR \
--model_name_or_path $MODEL_NAME_OR_PATH \
--model_type rag_sequence \
--fp16 \
--gpus 8
```
We publish two `base` models which can serve as a starting point for finetuning on downstream tasks (use them as `model_name_or_path`):
- [`facebook/rag-sequence-base`](https://huggingface.co/facebook/rag-sequence-base) - a base for finetuning `RagSequenceForGeneration` models,
- [`facebook/rag-token-base`](https://huggingface.co/facebook/rag-token-base) - a base for finetuning `RagTokenForGeneration` models.
The `base` models initialize the question encoder with [`facebook/dpr-question_encoder-single-nq-base`](https://huggingface.co/facebook/dpr-question_encoder-single-nq-base) and the generator with [`facebook/bart-large`](https://huggingface.co/facebook/bart-large).
If you would like to initialize finetuning with a base model using different question encoder and generator architectures, you can build it with a consolidation script, e.g.:
```
python examples/research_projects/rag/consolidate_rag_checkpoint.py \
--model_type rag_sequence \
--generator_name_or_path facebook/bart-large-cnn \
--question_encoder_name_or_path facebook/dpr-question_encoder-single-nq-base \
--dest path/to/checkpoint
```
You will then be able to pass `path/to/checkpoint` as `model_name_or_path` to the `finetune_rag.py` script.
## Document Retrieval
When running distributed fine-tuning, each training worker needs to retrieve contextual documents
for its input by querying a index loaded into memory. RAG provides two implementations for document retrieval,
one with [`torch.distributed`](https://pytorch.org/docs/stable/distributed.html) communication package and the other
with [`Ray`](https://docs.ray.io/en/master/).
This option can be configured with the `--distributed_retriever` flag which can either be set to `pytorch` or `ray`.
By default this flag is set to `pytorch`.
For the Pytorch implementation, only training worker 0 loads the index into CPU memory, and a gather/scatter pattern is used
to collect the inputs from the other training workers and send back the corresponding document embeddings.
For the Ray implementation, the index is loaded in *separate* process(es). The training workers randomly select which
retriever worker to query. To use Ray for distributed retrieval, you have to set the `--distributed_retriever` arg to `ray`.
To configure the number of retrieval workers (the number of processes that load the index), you can set the `num_retrieval_workers` flag.
Also make sure to start the Ray cluster before running fine-tuning.
```bash
# Start a single-node Ray cluster.
ray start --head
python examples/research_projects/rag/finetune_rag.py \
--data_dir $DATA_DIR \
--output_dir $OUTPUT_DIR \
--model_name_or_path $MODEL_NAME_OR_PATH \
--model_type rag_sequence \
--fp16 \
--gpus 8
--distributed_retriever ray \
--num_retrieval_workers 4
# Stop the ray cluster once fine-tuning has finished.
ray stop
```
Using Ray can lead to retrieval speedups on multi-GPU settings since multiple processes load the index rather than
just the rank 0 training worker. Using Ray also allows you to load the index on GPU since the index is loaded on a separate
processes than the model, while with pytorch distributed retrieval, both are loaded in the same process potentially leading to GPU OOM.
# Evaluation
Our evaluation script enables two modes of evaluation (controlled by the `eval_mode` argument): `e2e` - end2end evaluation, returns EM (exact match) and F1 scores calculated for the downstream task and `retrieval` - which returns precision@k of the documents retrieved for provided inputs.
The evaluation script expects paths to two files:
- `evaluation_set` - a path to a file specifying the evaluation dataset, a single input per line.
- `gold_data_path` - a path to a file contaning ground truth answers for datapoints from the `evaluation_set`, a single output per line. Check below for expected formats of the gold data files.
## Retrieval evaluation
For `retrieval` evaluation, we expect a gold data file where each line will consist of a tab-separated list of document titles constituting positive contexts for respective datapoints from the `evaluation_set`. E.g. given a question `who sings does he love me with reba` in the `evaluation_set`, a respective ground truth line could look as follows:
```
Does He Love You Does He Love You Red Sandy Spika dress of Reba McEntire Greatest Hits Volume Two (Reba McEntire album) Shoot for the Moon (album)
```
We demonstrate how to evaluate retrieval against DPR evaluation data. You can download respective files from links listed [here](https://github.com/facebookresearch/DPR/blob/master/data/download_data.py#L39-L45).
1. Download and unzip the gold data file. We use the `biencoder-nq-dev` from https://dl.fbaipublicfiles.com/dpr/data/retriever/biencoder-nq-dev.json.gz.
```bash
wget https://dl.fbaipublicfiles.com/dpr/data/retriever/biencoder-nq-dev.json.gz && gzip -d biencoder-nq-dev.json.gz
```
2. Parse the unziped file using the `parse_dpr_relevance_data.py`
```bash
mkdir output # or wherever you want to save this
python examples/research_projects/rag/parse_dpr_relevance_data.py \
--src_path biencoder-nq-dev.json \
--evaluation_set output/biencoder-nq-dev.questions \
--gold_data_path output/biencoder-nq-dev.pages
```
3. Run evaluation:
```bash
python examples/research_projects/rag/eval_rag.py \
--model_name_or_path facebook/rag-sequence-nq \
--model_type rag_sequence \
--evaluation_set output/biencoder-nq-dev.questions \
--gold_data_path output/biencoder-nq-dev.pages \
--predictions_path output/retrieval_preds.tsv \
--eval_mode retrieval \
--k 1
```
```bash
# EXPLANATION
python examples/research_projects/rag/eval_rag.py \
--model_name_or_path facebook/rag-sequence-nq \ # model name or path of the model we're evaluating
--model_type rag_sequence \ # RAG model type (rag_token or rag_sequence)
--evaluation_set output/biencoder-nq-dev.questions \ # an input dataset for evaluation
--gold_data_path poutput/biencoder-nq-dev.pages \ # a dataset containing ground truth answers for samples from the evaluation_set
--predictions_path output/retrieval_preds.tsv \ # name of file where predictions will be stored
--eval_mode retrieval \ # indicates whether we're performing retrieval evaluation or e2e evaluation
--k 1 # parameter k for the precision@k metric
```
## End-to-end evaluation
We support two formats of the gold data file (controlled by the `gold_data_mode` parameter):
- `qa` - where a single line has the following format: `input [tab] output_list`, e.g.:
```
who is the owner of reading football club ['Xiu Li Dai', 'Dai Yongge', 'Dai Xiuli', 'Yongge Dai']
```
- `ans` - where a single line contains a single expected answer, e.g.:
```
Xiu Li Dai
```
Predictions of the model for the samples from the `evaluation_set` will be saved under the path specified by the `predictions_path` parameter.
If this path already exists, the script will use saved predictions to calculate metrics.
Add `--recalculate` parameter to force the script to perform inference from scratch.
An example e2e evaluation run could look as follows:
```bash
python examples/research_projects/rag/eval_rag.py \
--model_name_or_path facebook/rag-sequence-nq \
--model_type rag_sequence \
--evaluation_set path/to/test.source \
--gold_data_path path/to/gold_data \
--predictions_path path/to/e2e_preds.txt \
--eval_mode e2e \
--gold_data_mode qa \
--n_docs 5 \ # You can experiment with retrieving different number of documents at evaluation time
--print_predictions \
--recalculate \ # adding this parameter will force recalculating predictions even if predictions_path already exists
```
# Use your own knowledge source
By default, RAG uses the English Wikipedia as a knowledge source, known as the 'wiki_dpr' dataset.
With `use_custom_knowledge_dataset.py` you can build your own knowledge source, *e.g.* for RAG.
For instance, if documents are serialized as tab-separated csv files with the columns "title" and "text", one can use `use_own_knowledge_dataset.py` as follows:
```bash
python examples/research_projects/rag/use_own_knowledge_dataset.py \
--csv_path path/to/my_csv \
--output_dir path/to/my_knowledge_dataset \
```
The created outputs in `path/to/my_knowledge_dataset` can then be used to finetune RAG as follows:
```bash
python examples/research_projects/rag/finetune_rag.py \
--data_dir $DATA_DIR \
--output_dir $OUTPUT_DIR \
--model_name_or_path $MODEL_NAME_OR_PATH \
--model_type rag_sequence \
--fp16 \
--gpus 8
--index_name custom
--passages_path path/to/data/my_knowledge_dataset
--index_path path/to/my_knowledge_dataset_hnsw_index.faiss
```
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hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/finetune_rag.sh | # Add parent directory to python path to access lightning_base.py
export PYTHONPATH="../":"${PYTHONPATH}"
# A sample finetuning run, you need to specify data_dir, output_dir and model_name_or_path
# run ./examples/rag/finetune_rag.sh --help to see all the possible options
python examples/rag/finetune_rag.py \
--data_dir $DATA_DIR \
--output_dir $OUTPUT_DIR \
--model_name_or_path $MODEL_NAME_OR_PATH \
--model_type rag_sequence \
--fp16 \
--gpus 8 \
--profile \
--do_train \
--do_predict \
--n_val -1 \
--train_batch_size 8 \
--eval_batch_size 1 \
--max_source_length 128 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-05 \
--num_train_epochs 100 \
--warmup_steps 500 \
--gradient_accumulation_steps 1 \
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/distributed_ray_retriever.py | import logging
import random
import ray
from transformers import RagConfig, RagRetriever, RagTokenizer
from transformers.models.rag.retrieval_rag import CustomHFIndex
logger = logging.getLogger(__name__)
class RayRetriever:
def __init__(self):
self.initialized = False
def create_rag_retriever(self, config, question_encoder_tokenizer, generator_tokenizer, index):
if not self.initialized:
self.retriever = RagRetriever(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.initialized = True
def init_retrieval(self):
self.retriever.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
doc_ids, retrieved_doc_embeds = self.retriever._main_retrieve(question_hidden_states, n_docs)
return doc_ids, retrieved_doc_embeds
class RagRayDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``Ray`` API, a library
for building distributed applications (https://docs.ray.io/en/master/).
package. During training, all training workers initialize their own
instance of a `RagRayDistributedRetriever`, and each instance of
this distributed retriever shares a common set of Retrieval Ray
Actors (https://docs.ray.io/en/master/walkthrough.html#remote
-classes-actors) that load the index on separate processes. Ray
handles the communication between the `RagRayDistributedRetriever`
instances and the remote Ray actors. If training is done in a
non-distributed setup, the index will simply be loaded in the same
process as the training worker and Ray will not be used.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
retrieval_workers (:obj:`List[ray.ActorClass(RayRetriever)]`): A list of already initialized `RayRetriever` actors.
These actor classes run on remote processes and are responsible for performing the index lookup.
index (:class:`~transformers.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, retrieval_workers, index=None):
if index is not None and index.is_initialized() and len(retrieval_workers) > 0:
raise ValueError(
"When using Ray for distributed fine-tuning, "
"you'll need to provide the paths instead, "
"as the dataset and the index are loaded "
"separately. More info in examples/rag/use_own_knowledge_dataset.py "
)
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.retrieval_workers = retrieval_workers
if len(self.retrieval_workers) > 0:
ray.get(
[
worker.create_rag_retriever.remote(config, question_encoder_tokenizer, generator_tokenizer, index)
for worker in self.retrieval_workers
]
)
def init_retrieval(self):
"""
Retriever initialization function, needs to be called from the
training process. This function triggers retrieval initialization
for all retrieval actors if using distributed setting, or loads
index into current process if training is not distributed.
"""
logger.info("initializing retrieval")
if len(self.retrieval_workers) > 0:
ray.get([worker.init_retrieval.remote() for worker in self.retrieval_workers])
else:
# Non-distributed training. Load index into this same process.
self.index.init_index()
def retrieve(self, question_hidden_states, n_docs):
"""
Retrieves documents for specified ``question_hidden_states``. If
running training with multiple workers, a random retrieval actor is
selected to perform the index lookup and return the result.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
if len(self.retrieval_workers) > 0:
# Select a random retrieval actor.
random_worker = self.retrieval_workers[random.randint(0, len(self.retrieval_workers) - 1)]
doc_ids, retrieved_doc_embeds = ray.get(random_worker.retrieve.remote(question_hidden_states, n_docs))
else:
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
return retrieved_doc_embeds, doc_ids, self.index.get_doc_dicts(doc_ids)
@classmethod
def get_tokenizers(cls, retriever_name_or_path, indexed_dataset=None, **kwargs):
return super(RagRayDistributedRetriever, cls).get_tokenizers(retriever_name_or_path, indexed_dataset, **kwargs)
@classmethod
def from_pretrained(cls, retriever_name_or_path, actor_handles, indexed_dataset=None, **kwargs):
config = kwargs.pop("config", None) or RagConfig.from_pretrained(retriever_name_or_path, **kwargs)
rag_tokenizer = RagTokenizer.from_pretrained(retriever_name_or_path, config=config)
question_encoder_tokenizer = rag_tokenizer.question_encoder
generator_tokenizer = rag_tokenizer.generator
if indexed_dataset is not None:
config.index_name = "custom"
index = CustomHFIndex(config.retrieval_vector_size, indexed_dataset)
else:
index = cls._build_index(config)
return cls(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
retrieval_workers=actor_handles,
index=index,
)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/eval_rag.py | """ Evaluation script for RAG models."""
import argparse
import ast
import logging
import os
import sys
import pandas as pd
import torch
from tqdm import tqdm
from transformers import BartForConditionalGeneration, RagRetriever, RagSequenceForGeneration, RagTokenForGeneration
from transformers import logging as transformers_logging
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # isort:skip
from utils_rag import exact_match_score, f1_score # noqa: E402 # isort:skip
logger = logging.getLogger(__name__)
logging.basicConfig(level=logging.INFO)
transformers_logging.set_verbosity_info()
def infer_model_type(model_name_or_path):
if "token" in model_name_or_path:
return "rag_token"
if "sequence" in model_name_or_path:
return "rag_sequence"
if "bart" in model_name_or_path:
return "bart"
return None
def metric_max_over_ground_truths(metric_fn, prediction, ground_truths):
return max(metric_fn(prediction, gt) for gt in ground_truths)
def get_scores(args, preds_path, gold_data_path):
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
answers = []
if args.gold_data_mode == "qa":
data = pd.read_csv(gold_data_path, sep="\t", header=None)
for answer_list in data[1]:
ground_truths = ast.literal_eval(answer_list)
answers.append(ground_truths)
else:
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
answers = [[reference] for reference in references]
f1 = em = total = 0
for prediction, ground_truths in zip(hypos, answers):
total += 1
em += metric_max_over_ground_truths(exact_match_score, prediction, ground_truths)
f1 += metric_max_over_ground_truths(f1_score, prediction, ground_truths)
em = 100.0 * em / total
f1 = 100.0 * f1 / total
logger.info(f"F1: {f1:.2f}")
logger.info(f"EM: {em:.2f}")
def get_precision_at_k(args, preds_path, gold_data_path):
k = args.k
hypos = [line.strip() for line in open(preds_path, "r").readlines()]
references = [line.strip() for line in open(gold_data_path, "r").readlines()]
em = total = 0
for hypo, reference in zip(hypos, references):
hypo_provenance = set(hypo.split("\t")[:k])
ref_provenance = set(reference.split("\t"))
total += 1
em += len(hypo_provenance & ref_provenance) / k
em = 100.0 * em / total
logger.info(f"Precision@{k}: {em: .2f}")
def evaluate_batch_retrieval(args, rag_model, questions):
def strip_title(title):
if title.startswith('"'):
title = title[1:]
if title.endswith('"'):
title = title[:-1]
return title
retriever_input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions,
return_tensors="pt",
padding=True,
truncation=True,
)["input_ids"].to(args.device)
question_enc_outputs = rag_model.rag.question_encoder(retriever_input_ids)
question_enc_pool_output = question_enc_outputs[0]
result = rag_model.retriever(
retriever_input_ids,
question_enc_pool_output.cpu().detach().to(torch.float32).numpy(),
prefix=rag_model.rag.generator.config.prefix,
n_docs=rag_model.config.n_docs,
return_tensors="pt",
)
all_docs = rag_model.retriever.index.get_doc_dicts(result.doc_ids)
provenance_strings = []
for docs in all_docs:
provenance = [strip_title(title) for title in docs["title"]]
provenance_strings.append("\t".join(provenance))
return provenance_strings
def evaluate_batch_e2e(args, rag_model, questions):
with torch.no_grad():
inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
questions, return_tensors="pt", padding=True, truncation=True
)
input_ids = inputs_dict.input_ids.to(args.device)
attention_mask = inputs_dict.attention_mask.to(args.device)
outputs = rag_model.generate( # rag_model overwrites generate
input_ids,
attention_mask=attention_mask,
num_beams=args.num_beams,
min_length=args.min_length,
max_length=args.max_length,
early_stopping=False,
num_return_sequences=1,
bad_words_ids=[[0, 0]], # BART likes to repeat BOS tokens, dont allow it to generate more than one
)
answers = rag_model.retriever.generator_tokenizer.batch_decode(outputs, skip_special_tokens=True)
if args.print_predictions:
for q, a in zip(questions, answers):
logger.info("Q: {} - A: {}".format(q, a))
return answers
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token", "bart"],
type=str,
help=(
"RAG model type: rag_sequence, rag_token or bart, if none specified, the type is inferred from the"
" model_name_or_path"
),
)
parser.add_argument(
"--index_name",
default=None,
choices=["exact", "compressed", "legacy"],
type=str,
help="RAG model retriever type",
)
parser.add_argument(
"--index_path",
default=None,
type=str,
help="Path to the retrieval index",
)
parser.add_argument("--n_docs", default=5, type=int, help="Number of retrieved docs")
parser.add_argument(
"--model_name_or_path",
default=None,
type=str,
required=True,
help="Path to pretrained checkpoints or model identifier from huggingface.co/models",
)
parser.add_argument(
"--eval_mode",
choices=["e2e", "retrieval"],
default="e2e",
type=str,
help=(
"Evaluation mode, e2e calculates exact match and F1 of the downstream task, retrieval calculates"
" precision@k."
),
)
parser.add_argument("--k", default=1, type=int, help="k for the precision@k calculation")
parser.add_argument(
"--evaluation_set",
default=None,
type=str,
required=True,
help="Path to a file containing evaluation samples",
)
parser.add_argument(
"--gold_data_path",
default=None,
type=str,
required=True,
help="Path to a tab-separated file with gold samples",
)
parser.add_argument(
"--gold_data_mode",
default="qa",
type=str,
choices=["qa", "ans"],
help=(
"Format of the gold data file"
"qa - a single line in the following format: question [tab] answer_list"
"ans - a single line of the gold file contains the expected answer string"
),
)
parser.add_argument(
"--predictions_path",
type=str,
default="predictions.txt",
help="Name of the predictions file, to be stored in the checkpoints directory",
)
parser.add_argument(
"--eval_all_checkpoints",
action="store_true",
help="Evaluate all checkpoints starting with the same prefix as model_name ending and ending with step number",
)
parser.add_argument(
"--eval_batch_size",
default=8,
type=int,
help="Batch size per GPU/CPU for evaluation.",
)
parser.add_argument(
"--recalculate",
help="Recalculate predictions even if the prediction file exists",
action="store_true",
)
parser.add_argument(
"--num_beams",
default=4,
type=int,
help="Number of beams to be used when generating answers",
)
parser.add_argument("--min_length", default=1, type=int, help="Min length of the generated answers")
parser.add_argument("--max_length", default=50, type=int, help="Max length of the generated answers")
parser.add_argument(
"--print_predictions",
action="store_true",
help="If True, prints predictions while evaluating.",
)
parser.add_argument(
"--print_docs",
action="store_true",
help="If True, prints docs retried while generating.",
)
args = parser.parse_args()
args.device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
return args
def main(args):
model_kwargs = {}
if args.model_type is None:
args.model_type = infer_model_type(args.model_name_or_path)
assert args.model_type is not None
if args.model_type.startswith("rag"):
model_class = RagTokenForGeneration if args.model_type == "rag_token" else RagSequenceForGeneration
model_kwargs["n_docs"] = args.n_docs
if args.index_name is not None:
model_kwargs["index_name"] = args.index_name
if args.index_path is not None:
model_kwargs["index_path"] = args.index_path
else:
model_class = BartForConditionalGeneration
checkpoints = (
[f.path for f in os.scandir(args.model_name_or_path) if f.is_dir()]
if args.eval_all_checkpoints
else [args.model_name_or_path]
)
logger.info("Evaluate the following checkpoints: %s", checkpoints)
score_fn = get_scores if args.eval_mode == "e2e" else get_precision_at_k
evaluate_batch_fn = evaluate_batch_e2e if args.eval_mode == "e2e" else evaluate_batch_retrieval
for checkpoint in checkpoints:
if os.path.exists(args.predictions_path) and (not args.recalculate):
logger.info("Calculating metrics based on an existing predictions file: {}".format(args.predictions_path))
score_fn(args, args.predictions_path, args.gold_data_path)
continue
logger.info("***** Running evaluation for {} *****".format(checkpoint))
logger.info(" Batch size = %d", args.eval_batch_size)
logger.info(" Predictions will be stored under {}".format(args.predictions_path))
if args.model_type.startswith("rag"):
retriever = RagRetriever.from_pretrained(checkpoint, **model_kwargs)
model = model_class.from_pretrained(checkpoint, retriever=retriever, **model_kwargs)
model.retriever.init_retrieval()
else:
model = model_class.from_pretrained(checkpoint, **model_kwargs)
model.to(args.device)
with open(args.evaluation_set, "r") as eval_file, open(args.predictions_path, "w") as preds_file:
questions = []
for line in tqdm(eval_file):
questions.append(line.strip())
if len(questions) == args.eval_batch_size:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers) + "\n")
preds_file.flush()
questions = []
if len(questions) > 0:
answers = evaluate_batch_fn(args, model, questions)
preds_file.write("\n".join(answers))
preds_file.flush()
score_fn(args, args.predictions_path, args.gold_data_path)
if __name__ == "__main__":
args = get_args()
main(args)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/distributed_pytorch_retriever.py | import logging
import os
from typing import List, Tuple
import numpy as np
import psutil
import torch
import torch.distributed as dist
from transformers import RagRetriever
logger = logging.getLogger(__name__)
class RagPyTorchDistributedRetriever(RagRetriever):
"""
A distributed retriever built on top of the ``torch.distributed`` communication package. During training all workers
initialize their own instance of the retriever, however, only the main worker loads the index into memory. The index is stored
in cpu memory. The index will also work well in a non-distributed setup.
Args:
config (:class:`~transformers.RagConfig`):
The configuration of the RAG model this Retriever is used with. Contains parameters indicating which ``Index`` to build.
question_encoder_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer that was used to tokenize the question.
It is used to decode the question and then use the generator_tokenizer.
generator_tokenizer (:class:`~transformers.PreTrainedTokenizer`):
The tokenizer used for the generator part of the RagModel.
index (:class:`~transformers.models.rag.retrieval_rag.Index`, optional, defaults to the one defined by the configuration):
If specified, use this index instead of the one built using the configuration
"""
def __init__(self, config, question_encoder_tokenizer, generator_tokenizer, index=None):
super().__init__(
config,
question_encoder_tokenizer=question_encoder_tokenizer,
generator_tokenizer=generator_tokenizer,
index=index,
init_retrieval=False,
)
self.process_group = None
def init_retrieval(self, distributed_port: int):
"""
Retriever initialization function, needs to be called from the training process. The function sets some common parameters
and environment variables. On top of that, (only) the main process in the process group loads the index into memory.
Args:
distributed_port (:obj:`int`):
The port on which the main communication of the training run is carried out. We set the port for retrieval-related
communication as ``distributed_port + 1``.
"""
logger.info("initializing retrieval")
# initializing a separate process group for retrieval as the default
# nccl backend doesn't support gather/scatter operations while gloo
# is too slow to replace nccl for the core gpu communication
if dist.is_initialized():
logger.info("dist initialized")
# needs to be set manually
os.environ["GLOO_SOCKET_IFNAME"] = self._infer_socket_ifname()
# avoid clash with the NCCL port
os.environ["MASTER_PORT"] = str(distributed_port + 1)
self.process_group = dist.new_group(ranks=None, backend="gloo")
# initialize retriever only on the main worker
if not dist.is_initialized() or self._is_main():
logger.info("dist not initialized / main")
self.index.init_index()
# all processes wait untill the retriever is initialized by the main process
if dist.is_initialized():
torch.distributed.barrier(group=self.process_group)
def _is_main(self):
return dist.get_rank(group=self.process_group) == 0
def _scattered(self, scatter_list, target_shape, target_type=torch.float32):
target_tensor = torch.empty(target_shape, dtype=target_type)
dist.scatter(target_tensor, src=0, scatter_list=scatter_list, group=self.process_group)
return target_tensor
def _infer_socket_ifname(self):
addrs = psutil.net_if_addrs()
# a hacky way to deal with varying network interface names
ifname = next((addr for addr in addrs if addr.startswith("e")), None)
return ifname
def retrieve(self, question_hidden_states: np.ndarray, n_docs: int) -> Tuple[np.ndarray, List[dict]]:
"""
Retrieves documents for specified ``question_hidden_states``. The main process, which has the access to the index stored in memory, gathers queries
from all the processes in the main training process group, performs the retrieval and scatters back the results.
Args:
question_hidden_states (:obj:`np.ndarray` of shape :obj:`(batch_size, vector_size)`):
A batch of query vectors to retrieve with.
n_docs (:obj:`int`):
The number of docs retrieved per query.
Output:
retrieved_doc_embeds (:obj:`np.ndarray` of shape :obj:`(batch_size, n_docs, dim)`
The retrieval embeddings of the retrieved docs per query.
doc_ids (:obj:`np.ndarray` of shape :obj:`batch_size, n_docs`)
The ids of the documents in the index
doc_dicts (:obj:`List[dict]`):
The retrieved_doc_embeds examples per query.
"""
# single GPU training
if not dist.is_initialized():
doc_ids, retrieved_doc_embeds = self._main_retrieve(question_hidden_states, n_docs)
return retrieved_doc_embeds, doc_ids, self.index.get_doc_dicts(doc_ids)
# distributed training
world_size = dist.get_world_size(group=self.process_group)
# gather logic
gather_list = None
if self._is_main():
gather_list = [torch.empty(question_hidden_states.shape, dtype=torch.float32) for _ in range(world_size)]
dist.gather(torch.tensor(question_hidden_states), dst=0, gather_list=gather_list, group=self.process_group)
# scatter logic
n_queries = question_hidden_states.shape[0]
scatter_ids = []
scatter_vectors = []
if self._is_main():
assert len(gather_list) == world_size
ids, vectors = self._main_retrieve(torch.cat(gather_list).numpy(), n_docs)
ids, vectors = torch.tensor(ids), torch.tensor(vectors)
scatter_ids = self._chunk_tensor(ids, n_queries)
scatter_vectors = self._chunk_tensor(vectors, n_queries)
doc_ids = self._scattered(scatter_ids, [n_queries, n_docs], target_type=torch.int64)
retrieved_doc_embeds = self._scattered(scatter_vectors, [n_queries, n_docs, question_hidden_states.shape[1]])
return retrieved_doc_embeds.numpy(), doc_ids.numpy(), self.index.get_doc_dicts(doc_ids)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/test_distributed_retriever.py | import json
import os
import shutil
import sys
import tempfile
import unittest
from unittest import TestCase
from unittest.mock import patch
import faiss
import numpy as np
from datasets import Dataset
from transformers import BartConfig, BartTokenizer, DPRConfig, DPRQuestionEncoderTokenizer, RagConfig
from transformers.file_utils import is_datasets_available, is_faiss_available, is_psutil_available, is_torch_available
from transformers.integrations import is_ray_available
from transformers.models.bert.tokenization_bert import VOCAB_FILES_NAMES as DPR_VOCAB_FILES_NAMES
from transformers.models.rag.retrieval_rag import CustomHFIndex, RagRetriever
from transformers.models.roberta.tokenization_roberta import VOCAB_FILES_NAMES as BART_VOCAB_FILES_NAMES
from transformers.testing_utils import require_ray
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # noqa: E402 # isort:skip
if is_torch_available():
from distributed_pytorch_retriever import RagPyTorchDistributedRetriever # noqa: E402 # isort:skip
else:
RagPyTorchDistributedRetriever = None
if is_ray_available():
import ray # noqa: E402 # isort:skip
from distributed_ray_retriever import RagRayDistributedRetriever, RayRetriever # noqa: E402 # isort:skip
else:
ray = None
RagRayDistributedRetriever = None
RayRetriever = None
def require_distributed_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
:class:`~transformers.RagRetriever`.
These tests are skipped when respective libraries are not installed.
"""
if not (is_datasets_available() and is_faiss_available() and is_psutil_available()):
test_case = unittest.skip("test requires Datasets, Faiss, psutil")(test_case)
return test_case
@require_distributed_retrieval
class RagRetrieverTest(TestCase):
def setUp(self):
self.tmpdirname = tempfile.mkdtemp()
self.retrieval_vector_size = 8
# DPR tok
vocab_tokens = [
"[UNK]",
"[CLS]",
"[SEP]",
"[PAD]",
"[MASK]",
"want",
"##want",
"##ed",
"wa",
"un",
"runn",
"##ing",
",",
"low",
"lowest",
]
dpr_tokenizer_path = os.path.join(self.tmpdirname, "dpr_tokenizer")
os.makedirs(dpr_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(dpr_tokenizer_path, DPR_VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
# BART tok
vocab = [
"l",
"o",
"w",
"e",
"r",
"s",
"t",
"i",
"d",
"n",
"\u0120",
"\u0120l",
"\u0120n",
"\u0120lo",
"\u0120low",
"er",
"\u0120lowest",
"\u0120newer",
"\u0120wider",
"<unk>",
]
vocab_tokens = dict(zip(vocab, range(len(vocab))))
merges = ["#version: 0.2", "\u0120 l", "\u0120l o", "\u0120lo w", "e r", ""]
self.special_tokens_map = {"unk_token": "<unk>"}
bart_tokenizer_path = os.path.join(self.tmpdirname, "bart_tokenizer")
os.makedirs(bart_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["vocab_file"])
self.merges_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["merges_file"])
with open(self.vocab_file, "w", encoding="utf-8") as fp:
fp.write(json.dumps(vocab_tokens) + "\n")
with open(self.merges_file, "w", encoding="utf-8") as fp:
fp.write("\n".join(merges))
def get_dpr_tokenizer(self) -> DPRQuestionEncoderTokenizer:
return DPRQuestionEncoderTokenizer.from_pretrained(os.path.join(self.tmpdirname, "dpr_tokenizer"))
def get_bart_tokenizer(self) -> BartTokenizer:
return BartTokenizer.from_pretrained(os.path.join(self.tmpdirname, "bart_tokenizer"))
def tearDown(self):
shutil.rmtree(self.tmpdirname)
def get_dummy_dataset(self):
dataset = Dataset.from_dict(
{
"id": ["0", "1"],
"text": ["foo", "bar"],
"title": ["Foo", "Bar"],
"embeddings": [np.ones(self.retrieval_vector_size), 2 * np.ones(self.retrieval_vector_size)],
}
)
dataset.add_faiss_index("embeddings", string_factory="Flat", metric_type=faiss.METRIC_INNER_PRODUCT)
return dataset
def get_dummy_pytorch_distributed_retriever(
self, init_retrieval: bool, port=12345
) -> RagPyTorchDistributedRetriever:
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
)
with patch("transformers.models.rag.retrieval_rag.load_dataset") as mock_load_dataset:
mock_load_dataset.return_value = dataset
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
)
if init_retrieval:
retriever.init_retrieval(port)
return retriever
def get_dummy_ray_distributed_retriever(self, init_retrieval: bool) -> RagRayDistributedRetriever:
# Have to run in local mode because sys.path modifications at top of
# file are not propogated to remote workers.
# https://stackoverflow.com/questions/54338013/parallel-import-a-python-file-from-sibling-folder
ray.init(local_mode=True)
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
)
remote_cls = ray.remote(RayRetriever)
workers = [remote_cls.remote() for _ in range(1)]
with patch("transformers.models.rag.retrieval_rag.load_dataset") as mock_load_dataset:
mock_load_dataset.return_value = self.get_dummy_dataset()
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
)
if init_retrieval:
retriever.init_retrieval()
return retriever
def get_dummy_custom_hf_index_pytorch_retriever(self, init_retrieval: bool, from_disk: bool, port=12345):
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
index_name="custom",
)
if from_disk:
config.passages_path = os.path.join(self.tmpdirname, "dataset")
config.index_path = os.path.join(self.tmpdirname, "index.faiss")
dataset.get_index("embeddings").save(os.path.join(self.tmpdirname, "index.faiss"))
dataset.drop_index("embeddings")
dataset.save_to_disk(os.path.join(self.tmpdirname, "dataset"))
del dataset
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
)
else:
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
index=CustomHFIndex(config.retrieval_vector_size, dataset),
)
if init_retrieval:
retriever.init_retrieval(port)
return retriever
def get_dummy_custom_hf_index_ray_retriever(self, init_retrieval: bool, from_disk: bool):
# Have to run in local mode because sys.path modifications at top of
# file are not propogated to remote workers.
# https://stackoverflow.com/questions/54338013/parallel-import-a-python-file-from-sibling-folder
ray.init(local_mode=True)
dataset = self.get_dummy_dataset()
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
index_name="custom",
)
remote_cls = ray.remote(RayRetriever)
workers = [remote_cls.remote() for _ in range(1)]
if from_disk:
config.passages_path = os.path.join(self.tmpdirname, "dataset")
config.index_path = os.path.join(self.tmpdirname, "index.faiss")
dataset.get_index("embeddings").save(os.path.join(self.tmpdirname, "index.faiss"))
dataset.drop_index("embeddings")
dataset.save_to_disk(os.path.join(self.tmpdirname, "dataset"))
del dataset
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
index=CustomHFIndex.load_from_disk(
vector_size=config.retrieval_vector_size,
dataset_path=config.passages_path,
index_path=config.index_path,
),
)
else:
retriever = RagRayDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
retrieval_workers=workers,
index=CustomHFIndex(config.retrieval_vector_size, dataset),
)
if init_retrieval:
retriever.init_retrieval()
return retriever
def distributed_retriever_check(self, retriever: RagRetriever, hidden_states: np.array, n_docs: int) -> None:
retrieved_doc_embeds, doc_ids, doc_dicts = retriever.retrieve(hidden_states, n_docs=n_docs)
self.assertEqual(retrieved_doc_embeds.shape, (2, n_docs, self.retrieval_vector_size))
self.assertEqual(len(doc_dicts), 2)
self.assertEqual(sorted(doc_dicts[0]), ["embeddings", "id", "text", "title"])
self.assertEqual(len(doc_dicts[0]["id"]), n_docs)
self.assertEqual(doc_dicts[0]["id"][0], "1") # max inner product is reached with second doc
self.assertEqual(doc_dicts[1]["id"][0], "0") # max inner product is reached with first doc
self.assertListEqual(doc_ids.tolist(), [[1], [0]])
def test_pytorch_distributed_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_pytorch_distributed_retriever(init_retrieval=True), hidden_states, n_docs
)
def test_custom_hf_index_pytorch_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_pytorch_retriever(init_retrieval=True, from_disk=False),
hidden_states,
n_docs,
)
def test_custom_pytorch_distributed_retriever_retrieve_from_disk(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_pytorch_retriever(init_retrieval=True, from_disk=True),
hidden_states,
n_docs,
)
@require_ray
def test_ray_distributed_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_ray_distributed_retriever(init_retrieval=True), hidden_states, n_docs
)
ray.shutdown()
@require_ray
def test_custom_hf_index_ray_retriever_retrieve(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
with self.assertRaises(ValueError):
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_ray_retriever(init_retrieval=True, from_disk=False),
hidden_states,
n_docs,
)
ray.shutdown()
@require_ray
def test_custom_ray_distributed_retriever_retrieve_from_disk(self):
n_docs = 1
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
self.distributed_retriever_check(
self.get_dummy_custom_hf_index_ray_retriever(init_retrieval=True, from_disk=True), hidden_states, n_docs
)
ray.shutdown()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/consolidate_rag_checkpoint.py | """
A script creating a RAG checkpoint from a generator and a question encoder checkpoints.
"""
import argparse
from pathlib import Path
from transformers import AutoConfig, AutoTokenizer, RagConfig, RagSequenceForGeneration, RagTokenForGeneration
def consolidate(
model_type,
generator_name_or_path: str,
question_encoder_name_or_path: str,
dest_dir: Path,
config_name_or_path: str = None,
generator_tokenizer_name_or_path: str = None,
question_encoder_tokenizer_name_or_path: str = None,
):
if config_name_or_path is None:
config_name_or_path = "facebook/rag-token-base" if model_type == "rag_token" else "facebook/rag-sequence-base"
if generator_tokenizer_name_or_path is None:
generator_tokenizer_name_or_path = generator_name_or_path
if question_encoder_tokenizer_name_or_path is None:
question_encoder_tokenizer_name_or_path = question_encoder_name_or_path
model_class = RagTokenForGeneration if model_type == "rag_token" else RagSequenceForGeneration
# Save model.
rag_config = RagConfig.from_pretrained(config_name_or_path)
gen_config = AutoConfig.from_pretrained(generator_name_or_path)
question_encoder_config = AutoConfig.from_pretrained(question_encoder_name_or_path)
rag_config.generator = gen_config
rag_config.question_encoder = question_encoder_config
rag_model = model_class.from_pretrained_question_encoder_generator(
question_encoder_name_or_path, generator_name_or_path, config=rag_config
)
rag_model.save_pretrained(dest_dir)
# Sanity check.
model_class.from_pretrained(dest_dir)
# Save tokenizers.
gen_tokenizer = AutoTokenizer.from_pretrained(generator_tokenizer_name_or_path)
gen_tokenizer.save_pretrained(dest_dir / "generator_tokenizer/")
question_encoder_tokenizer = AutoTokenizer.from_pretrained(question_encoder_tokenizer_name_or_path)
question_encoder_tokenizer.save_pretrained(dest_dir / "question_encoder_tokenizer/")
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_type",
choices=["rag_sequence", "rag_token"],
required=True,
type=str,
help="RAG model type: rag_sequence, rag_token",
)
parser.add_argument("--dest", type=str, required=True, help="Path to the output checkpoint directory.")
parser.add_argument("--generator_name_or_path", type=str, required=True, help="Generator model identifier")
parser.add_argument(
"--question_encoder_name_or_path", type=str, required=True, help="Question encoder model identifier"
)
parser.add_argument(
"--generator_tokenizer_name_or_path",
type=str,
help="Generator tokenizer identifier, if not specified, resolves to ``generator_name_or_path``",
)
parser.add_argument(
"--question_encoder_tokenizer_name_or_path",
type=str,
help="Question encoder tokenizer identifier, if not specified, resolves to ``question_encoder_name_or_path``",
)
parser.add_argument(
"--config_name_or_path",
type=str,
help=(
"Identifier of the model config to use, if not provided, resolves to a base config for a given"
" ``model_type``"
),
)
args = parser.parse_args()
dest_dir = Path(args.dest)
dest_dir.mkdir(exist_ok=True)
consolidate(
args.model_type,
args.generator_name_or_path,
args.question_encoder_name_or_path,
dest_dir,
args.config_name_or_path,
args.generator_tokenizer_name_or_path,
args.question_encoder_tokenizer_name_or_path,
)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/_test_finetune_rag.py | import json
import logging
import os
import sys
from pathlib import Path
import finetune_rag
from transformers.file_utils import is_apex_available
from transformers.testing_utils import (
TestCasePlus,
execute_subprocess_async,
require_ray,
require_torch_gpu,
require_torch_multi_gpu,
)
logging.basicConfig(level=logging.DEBUG)
logger = logging.getLogger()
stream_handler = logging.StreamHandler(sys.stdout)
logger.addHandler(stream_handler)
class RagFinetuneExampleTests(TestCasePlus):
def _create_dummy_data(self, data_dir):
os.makedirs(data_dir, exist_ok=True)
contents = {"source": "What is love ?", "target": "life"}
n_lines = {"train": 12, "val": 2, "test": 2}
for split in ["train", "test", "val"]:
for field in ["source", "target"]:
content = "\n".join([contents[field]] * n_lines[split])
with open(os.path.join(data_dir, f"{split}.{field}"), "w") as f:
f.write(content)
def _run_finetune(self, gpus: int, distributed_retriever: str = "pytorch"):
tmp_dir = self.get_auto_remove_tmp_dir()
output_dir = os.path.join(tmp_dir, "output")
data_dir = os.path.join(tmp_dir, "data")
self._create_dummy_data(data_dir=data_dir)
testargs = f"""
--data_dir {data_dir} \
--output_dir {output_dir} \
--model_name_or_path facebook/rag-sequence-base \
--model_type rag_sequence \
--do_train \
--do_predict \
--n_val -1 \
--val_check_interval 1.0 \
--train_batch_size 2 \
--eval_batch_size 1 \
--max_source_length 25 \
--max_target_length 25 \
--val_max_target_length 25 \
--test_max_target_length 25 \
--label_smoothing 0.1 \
--dropout 0.1 \
--attention_dropout 0.1 \
--weight_decay 0.001 \
--adam_epsilon 1e-08 \
--max_grad_norm 0.1 \
--lr_scheduler polynomial \
--learning_rate 3e-04 \
--num_train_epochs 1 \
--warmup_steps 4 \
--gradient_accumulation_steps 1 \
--distributed-port 8787 \
--use_dummy_dataset 1 \
--distributed_retriever {distributed_retriever} \
""".split()
if gpus > 0:
testargs.append(f"--gpus={gpus}")
if is_apex_available():
testargs.append("--fp16")
else:
testargs.append("--gpus=0")
testargs.append("--distributed_backend=ddp_cpu")
testargs.append("--num_processes=2")
cmd = [sys.executable, str(Path(finetune_rag.__file__).resolve())] + testargs
execute_subprocess_async(cmd, env=self.get_env())
metrics_save_path = os.path.join(output_dir, "metrics.json")
with open(metrics_save_path) as f:
result = json.load(f)
return result
@require_torch_gpu
def test_finetune_gpu(self):
result = self._run_finetune(gpus=1)
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_multi_gpu
def test_finetune_multigpu(self):
result = self._run_finetune(gpus=2)
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_gpu
@require_ray
def test_finetune_gpu_ray_retrieval(self):
result = self._run_finetune(gpus=1, distributed_retriever="ray")
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
@require_torch_multi_gpu
@require_ray
def test_finetune_multigpu_ray_retrieval(self):
result = self._run_finetune(gpus=1, distributed_retriever="ray")
self.assertGreaterEqual(result["test"][0]["test_avg_em"], 0.2)
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/rag/use_own_knowledge_dataset.py | import logging
import os
from dataclasses import dataclass, field
from functools import partial
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import List, Optional
import faiss
import torch
from datasets import Features, Sequence, Value, load_dataset
from transformers import (
DPRContextEncoder,
DPRContextEncoderTokenizerFast,
HfArgumentParser,
RagRetriever,
RagSequenceForGeneration,
RagTokenizer,
)
logger = logging.getLogger(__name__)
torch.set_grad_enabled(False)
device = "cuda" if torch.cuda.is_available() else "cpu"
def split_text(text: str, n=100, character=" ") -> List[str]:
"""Split the text every ``n``-th occurrence of ``character``"""
text = text.split(character)
return [character.join(text[i : i + n]).strip() for i in range(0, len(text), n)]
def split_documents(documents: dict) -> dict:
"""Split documents into passages"""
titles, texts = [], []
for title, text in zip(documents["title"], documents["text"]):
if text is not None:
for passage in split_text(text):
titles.append(title if title is not None else "")
texts.append(passage)
return {"title": titles, "text": texts}
def embed(documents: dict, ctx_encoder: DPRContextEncoder, ctx_tokenizer: DPRContextEncoderTokenizerFast) -> dict:
"""Compute the DPR embeddings of document passages"""
input_ids = ctx_tokenizer(
documents["title"], documents["text"], truncation=True, padding="longest", return_tensors="pt"
)["input_ids"]
embeddings = ctx_encoder(input_ids.to(device=device), return_dict=True).pooler_output
return {"embeddings": embeddings.detach().cpu().numpy()}
def main(
rag_example_args: "RagExampleArguments",
processing_args: "ProcessingArguments",
index_hnsw_args: "IndexHnswArguments",
):
######################################
logger.info("Step 1 - Create the dataset")
######################################
# The dataset needed for RAG must have three columns:
# - title (string): title of the document
# - text (string): text of a passage of the document
# - embeddings (array of dimension d): DPR representation of the passage
# Let's say you have documents in tab-separated csv files with columns "title" and "text"
assert os.path.isfile(rag_example_args.csv_path), "Please provide a valid path to a csv file"
# You can load a Dataset object this way
dataset = load_dataset(
"csv", data_files=[rag_example_args.csv_path], split="train", delimiter="\t", column_names=["title", "text"]
)
# More info about loading csv files in the documentation: https://huggingface.co/docs/datasets/loading_datasets?highlight=csv#csv-files
# Then split the documents into passages of 100 words
dataset = dataset.map(split_documents, batched=True, num_proc=processing_args.num_proc)
# And compute the embeddings
ctx_encoder = DPRContextEncoder.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name).to(device=device)
ctx_tokenizer = DPRContextEncoderTokenizerFast.from_pretrained(rag_example_args.dpr_ctx_encoder_model_name)
new_features = Features(
{"text": Value("string"), "title": Value("string"), "embeddings": Sequence(Value("float32"))}
) # optional, save as float32 instead of float64 to save space
dataset = dataset.map(
partial(embed, ctx_encoder=ctx_encoder, ctx_tokenizer=ctx_tokenizer),
batched=True,
batch_size=processing_args.batch_size,
features=new_features,
)
# And finally save your dataset
passages_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset")
dataset.save_to_disk(passages_path)
# from datasets import load_from_disk
# dataset = load_from_disk(passages_path) # to reload the dataset
######################################
logger.info("Step 2 - Index the dataset")
######################################
# Let's use the Faiss implementation of HNSW for fast approximate nearest neighbor search
index = faiss.IndexHNSWFlat(index_hnsw_args.d, index_hnsw_args.m, faiss.METRIC_INNER_PRODUCT)
dataset.add_faiss_index("embeddings", custom_index=index)
# And save the index
index_path = os.path.join(rag_example_args.output_dir, "my_knowledge_dataset_hnsw_index.faiss")
dataset.get_index("embeddings").save(index_path)
# dataset.load_faiss_index("embeddings", index_path) # to reload the index
######################################
logger.info("Step 3 - Load RAG")
######################################
# Easy way to load the model
retriever = RagRetriever.from_pretrained(
rag_example_args.rag_model_name, index_name="custom", indexed_dataset=dataset
)
model = RagSequenceForGeneration.from_pretrained(rag_example_args.rag_model_name, retriever=retriever)
tokenizer = RagTokenizer.from_pretrained(rag_example_args.rag_model_name)
# For distributed fine-tuning you'll need to provide the paths instead, as the dataset and the index are loaded separately.
# retriever = RagRetriever.from_pretrained(rag_model_name, index_name="custom", passages_path=passages_path, index_path=index_path)
######################################
logger.info("Step 4 - Have fun")
######################################
question = rag_example_args.question or "What does Moses' rod turn into ?"
input_ids = tokenizer.question_encoder(question, return_tensors="pt")["input_ids"]
generated = model.generate(input_ids)
generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)[0]
logger.info("Q: " + question)
logger.info("A: " + generated_string)
@dataclass
class RagExampleArguments:
csv_path: str = field(
default=str(Path(__file__).parent / "test_data" / "my_knowledge_dataset.csv"),
metadata={"help": "Path to a tab-separated csv file with columns 'title' and 'text'"},
)
question: Optional[str] = field(
default=None,
metadata={"help": "Question that is passed as input to RAG. Default is 'What does Moses' rod turn into ?'."},
)
rag_model_name: str = field(
default="facebook/rag-sequence-nq",
metadata={"help": "The RAG model to use. Either 'facebook/rag-sequence-nq' or 'facebook/rag-token-nq'"},
)
dpr_ctx_encoder_model_name: str = field(
default="facebook/dpr-ctx_encoder-multiset-base",
metadata={
"help": (
"The DPR context encoder model to use. Either 'facebook/dpr-ctx_encoder-single-nq-base' or"
" 'facebook/dpr-ctx_encoder-multiset-base'"
)
},
)
output_dir: Optional[str] = field(
default=None,
metadata={"help": "Path to a directory where the dataset passages and the index will be saved"},
)
@dataclass
class ProcessingArguments:
num_proc: Optional[int] = field(
default=None,
metadata={
"help": "The number of processes to use to split the documents into passages. Default is single process."
},
)
batch_size: int = field(
default=16,
metadata={
"help": "The batch size to use when computing the passages embeddings using the DPR context encoder."
},
)
@dataclass
class IndexHnswArguments:
d: int = field(
default=768,
metadata={"help": "The dimension of the embeddings to pass to the HNSW Faiss index."},
)
m: int = field(
default=128,
metadata={
"help": (
"The number of bi-directional links created for every new element during the HNSW index construction."
)
},
)
if __name__ == "__main__":
logging.basicConfig(level=logging.WARNING)
logger.setLevel(logging.INFO)
parser = HfArgumentParser((RagExampleArguments, ProcessingArguments, IndexHnswArguments))
rag_example_args, processing_args, index_hnsw_args = parser.parse_args_into_dataclasses()
with TemporaryDirectory() as tmp_dir:
rag_example_args.output_dir = rag_example_args.output_dir or tmp_dir
main(rag_example_args, processing_args, index_hnsw_args)
| 0 |
hf_public_repos/transformers/examples/research_projects/rag | hf_public_repos/transformers/examples/research_projects/rag/test_data/my_knowledge_dataset.csv | Aaron Aaron Aaron ( or ; "Ahärôn") is a prophet, high priest, and the brother of Moses in the Abrahamic religions. Knowledge of Aaron, along with his brother Moses, comes exclusively from religious texts, such as the Bible and Quran. The Hebrew Bible relates that, unlike Moses, who grew up in the Egyptian royal court, Aaron and his elder sister Miriam remained with their kinsmen in the eastern border-land of Egypt (Goshen). When Moses first confronted the Egyptian king about the Israelites, Aaron served as his brother's spokesman ("prophet") to the Pharaoh. Part of the Law (Torah) that Moses received from God at Sinai granted Aaron the priesthood for himself and his male descendants, and he became the first High Priest of the Israelites. Aaron died before the Israelites crossed the North Jordan river and he was buried on Mount Hor (Numbers 33:39; Deuteronomy 10:6 says he died and was buried at Moserah). Aaron is also mentioned in the New Testament of the Bible. According to the Book of Exodus, Aaron first functioned as Moses' assistant. Because Moses complained that he could not speak well, God appointed Aaron as Moses' "prophet" (Exodus 4:10-17; 7:1). At the command of Moses, he let his rod turn into a snake. Then he stretched out his rod in order to bring on the first three plagues. After that, Moses tended to act and speak for himself. During the journey in the wilderness, Aaron was not always prominent or active. At the battle with Amalek, he was chosen with Hur to support the hand of Moses that held the "rod of God". When the revelation was given to Moses at biblical Mount Sinai, he headed the elders of Israel who accompanied Moses on the way to the summit.
"Pokémon" Pokémon , also known as in Japan, is a media franchise managed by The Pokémon Company, a Japanese consortium between Nintendo, Game Freak, and Creatures. The franchise copyright is shared by all three companies, but Nintendo is the sole owner of the trademark. The franchise was created by Satoshi Tajiri in 1995, and is centered on fictional creatures called "Pokémon", which humans, known as Pokémon Trainers, catch and train to battle each other for sport. The English slogan for the franchise is "Gotta Catch 'Em All". Works within the franchise are set in the Pokémon universe. The franchise began as "Pokémon Red" and "Green" (released outside of Japan as "Pokémon Red" and "Blue"), a pair of video games for the original Game Boy that were developed by Game Freak and published by Nintendo in February 1996. "Pokémon" has since gone on to become the highest-grossing media franchise of all time, with over in revenue up until March 2017. The original video game series is the second best-selling video game franchise (behind Nintendo's "Mario" franchise) with more than 300million copies sold and over 800million mobile downloads. In addition, the "Pokémon" franchise includes the world's top-selling toy brand, the top-selling trading card game with over 25.7billion cards sold, an anime television series that has become the most successful video game adaptation with over 20 seasons and 1,000 episodes in 124 countries, as well as an anime film series, a , books, manga comics, music, and merchandise. The franchise is also represented in other Nintendo media, such as the "Super Smash Bros." series. In November 2005, 4Kids Entertainment, which had managed the non-game related licensing of "Pokémon", announced that it had agreed not to renew the "Pokémon" representation agreement. The Pokémon Company International oversees all "Pokémon" licensing outside Asia. | 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/finetune_wav2vec2_xlsr_turkish.sh | #!/usr/bin/env bash
python run_common_voice.py \
--model_name_or_path="facebook/wav2vec2-large-xlsr-53" \
--dataset_config_name="tr" \
--output_dir=./wav2vec2-large-xlsr-turkish-demo \
--overwrite_output_dir \
--num_train_epochs="5" \
--per_device_train_batch_size="16" \
--evaluation_strategy="steps" \
--learning_rate="3e-4" \
--warmup_steps="500" \
--fp16 \
--freeze_feature_extractor \
--save_steps="400" \
--eval_steps="400" \
--save_total_limit="3" \
--logging_steps="400" \
--group_by_length \
--feat_proj_dropout="0.0" \
--layerdrop="0.1" \
--gradient_checkpointing \
--do_train --do_eval
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/finetune_large_xlsr_53_arabic_speech_corpus.sh | #!/usr/bin/env bash
python run_asr.py \
--output_dir="./wav2vec2-large-xlsr-53-arabic-speech-corpus" \
--num_train_epochs="50" \
--per_device_train_batch_size="1" \
--per_device_eval_batch_size="1" \
--gradient_accumulation_steps="8" \
--evaluation_strategy="steps" \
--save_steps="500" \
--eval_steps="100" \
--logging_steps="50" \
--learning_rate="5e-4" \
--warmup_steps="3000" \
--model_name_or_path="elgeish/wav2vec2-large-xlsr-53-arabic" \
--fp16 \
--dataset_name="arabic_speech_corpus" \
--train_split_name="train" \
--validation_split_name="test" \
--max_duration_in_seconds="15" \
--orthography="buckwalter" \
--preprocessing_num_workers="$(nproc)" \
--group_by_length \
--freeze_feature_extractor \
--target_feature_extractor_sampling_rate \
--verbose_logging \
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/requirements.txt | transformers
datasets
torch>=1.5.0
torchaudio
jiwer==2.2.0
lang-trans==0.6.0
librosa==0.8.0
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/alignment.py | # Parts of the code are adapted from the snippets provided in the TorchAudio Wav2Vec forced alignment tutorial.
# The full tutorial can be found here: https://pytorch.org/audio/stable/tutorials/forced_alignment_tutorial.html
import argparse
import os
from dataclasses import dataclass
import torch
import torchaudio
from tqdm import tqdm
from transformers import AutoConfig, AutoModelForCTC, AutoProcessor
class Wav2Vec2Aligner:
def __init__(self, model_name, input_wavs_sr, cuda):
self.cuda = cuda
self.config = AutoConfig.from_pretrained(model_name)
self.model = AutoModelForCTC.from_pretrained(model_name)
self.model.eval()
if self.cuda:
self.model.to(device="cuda")
self.processor = AutoProcessor.from_pretrained(model_name)
self.resampler = torchaudio.transforms.Resample(input_wavs_sr, 16_000)
blank_id = 0
vocab = list(self.processor.tokenizer.get_vocab().keys())
for i in range(len(vocab)):
if vocab[i] == "[PAD]" or vocab[i] == "<pad>":
blank_id = i
print("Blank Token id [PAD]/<pad>", blank_id)
self.blank_id = blank_id
def speech_file_to_array_fn(self, wav_path):
speech_array, sampling_rate = torchaudio.load(wav_path)
speech = self.resampler(speech_array).squeeze().numpy()
return speech
def align_single_sample(self, item):
blank_id = self.blank_id
transcript = "|".join(item["sent"].split(" "))
if not os.path.isfile(item["wav_path"]):
print(item["wav_path"], "not found in wavs directory")
speech_array = self.speech_file_to_array_fn(item["wav_path"])
inputs = self.processor(speech_array, sampling_rate=16_000, return_tensors="pt", padding=True)
if self.cuda:
inputs = inputs.to(device="cuda")
with torch.no_grad():
logits = self.model(inputs.input_values).logits
# get the emission probability at frame level
emissions = torch.log_softmax(logits, dim=-1)
emission = emissions[0].cpu().detach()
# get labels from vocab
labels = ([""] + list(self.processor.tokenizer.get_vocab().keys()))[
:-1
] # logits don't align with the tokenizer's vocab
dictionary = {c: i for i, c in enumerate(labels)}
tokens = []
for c in transcript:
if c in dictionary:
tokens.append(dictionary[c])
def get_trellis(emission, tokens, blank_id=0):
"""
Build a trellis matrix of shape (num_frames + 1, num_tokens + 1)
that represents the probabilities of each source token being at a certain time step
"""
num_frames = emission.size(0)
num_tokens = len(tokens)
# Trellis has extra diemsions for both time axis and tokens.
# The extra dim for tokens represents <SoS> (start-of-sentence)
# The extra dim for time axis is for simplification of the code.
trellis = torch.full((num_frames + 1, num_tokens + 1), -float("inf"))
trellis[:, 0] = 0
for t in range(num_frames):
trellis[t + 1, 1:] = torch.maximum(
# Score for staying at the same token
trellis[t, 1:] + emission[t, blank_id],
# Score for changing to the next token
trellis[t, :-1] + emission[t, tokens],
)
return trellis
trellis = get_trellis(emission, tokens, blank_id)
@dataclass
class Point:
token_index: int
time_index: int
score: float
def backtrack(trellis, emission, tokens, blank_id=0):
"""
Walk backwards from the last (sentence_token, time_step) pair to build the optimal sequence alignment path
"""
# Note:
# j and t are indices for trellis, which has extra dimensions
# for time and tokens at the beginning.
# When referring to time frame index `T` in trellis,
# the corresponding index in emission is `T-1`.
# Similarly, when referring to token index `J` in trellis,
# the corresponding index in transcript is `J-1`.
j = trellis.size(1) - 1
t_start = torch.argmax(trellis[:, j]).item()
path = []
for t in range(t_start, 0, -1):
# 1. Figure out if the current position was stay or change
# Note (again):
# `emission[J-1]` is the emission at time frame `J` of trellis dimension.
# Score for token staying the same from time frame J-1 to T.
stayed = trellis[t - 1, j] + emission[t - 1, blank_id]
# Score for token changing from C-1 at T-1 to J at T.
changed = trellis[t - 1, j - 1] + emission[t - 1, tokens[j - 1]]
# 2. Store the path with frame-wise probability.
prob = emission[t - 1, tokens[j - 1] if changed > stayed else 0].exp().item()
# Return token index and time index in non-trellis coordinate.
path.append(Point(j - 1, t - 1, prob))
# 3. Update the token
if changed > stayed:
j -= 1
if j == 0:
break
else:
raise ValueError("Failed to align")
return path[::-1]
path = backtrack(trellis, emission, tokens, blank_id)
@dataclass
class Segment:
label: str
start: int
end: int
score: float
def __repr__(self):
return f"{self.label}\t{self.score:4.2f}\t{self.start*20:5d}\t{self.end*20:5d}"
@property
def length(self):
return self.end - self.start
def merge_repeats(path):
"""
Merge repeated tokens into a single segment. Note: this shouldn't affect repeated characters from the
original sentences (e.g. `ll` in `hello`)
"""
i1, i2 = 0, 0
segments = []
while i1 < len(path):
while i2 < len(path) and path[i1].token_index == path[i2].token_index:
i2 += 1
score = sum(path[k].score for k in range(i1, i2)) / (i2 - i1)
segments.append(
Segment(
transcript[path[i1].token_index],
path[i1].time_index,
path[i2 - 1].time_index + 1,
score,
)
)
i1 = i2
return segments
segments = merge_repeats(path)
with open(item["out_path"], "w") as out_align:
for seg in segments:
out_align.write(str(seg) + "\n")
def align_data(self, wav_dir, text_file, output_dir):
if not os.path.exists(output_dir):
os.makedirs(output_dir)
# load text file
lines = open(text_file, encoding="utf8").readlines()
items = []
for line in lines:
if len(line.strip().split("\t")) != 2:
print("Script must be in format: 00001 this is my sentence")
exit()
wav_name, sentence = line.strip().split("\t")
wav_path = os.path.join(wav_dir, wav_name + ".wav")
out_path = os.path.join(output_dir, wav_name + ".txt")
items.append({"sent": sentence, "wav_path": wav_path, "out_path": out_path})
print("Number of samples found in script file", len(items))
for item in tqdm(items):
self.align_single_sample(item)
def main():
parser = argparse.ArgumentParser()
parser.add_argument(
"--model_name", type=str, default="arijitx/wav2vec2-xls-r-300m-bengali", help="wav2vec model name"
)
parser.add_argument("--wav_dir", type=str, default="./wavs", help="directory containing wavs")
parser.add_argument("--text_file", type=str, default="script.txt", help="file containing text")
parser.add_argument("--input_wavs_sr", type=int, default=16000, help="sampling rate of input audios")
parser.add_argument(
"--output_dir", type=str, default="./out_alignment", help="output directory containing the alignment files"
)
parser.add_argument("--cuda", action="store_true")
args = parser.parse_args()
aligner = Wav2Vec2Aligner(args.model_name, args.input_wavs_sr, args.cuda)
aligner.align_data(args.wav_dir, args.text_file, args.output_dir)
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/run_pretrain.py | #!/usr/bin/env python3
import logging
import sys
from dataclasses import dataclass, field
from typing import Any, Dict, List, Optional, Union
import librosa
import torch
from datasets import DatasetDict, load_dataset
from packaging import version
from torch import nn
from transformers import (
HfArgumentParser,
Trainer,
TrainingArguments,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2ForPreTraining,
is_apex_available,
trainer_utils,
)
from transformers.models.wav2vec2.modeling_wav2vec2 import _compute_mask_indices
if is_apex_available():
from apex import amp
if version.parse(version.parse(torch.__version__).base_version) >= version.parse("1.6"):
_is_native_amp_available = True
from torch.cuda.amp import autocast
logger = logging.getLogger(__name__)
@dataclass
class ModelArguments:
"""
Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
"""
model_name_or_path: str = field(
metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
)
cache_dir: Optional[str] = field(
default=None,
metadata={"help": "Where do you want to store the pretrained models downloaded from huggingface.co"},
)
freeze_feature_extractor: Optional[bool] = field(
default=True, metadata={"help": "Whether to freeze the feature extractor layers of the model."}
)
verbose_logging: Optional[bool] = field(
default=False,
metadata={"help": "Whether to log verbose messages or not."},
)
max_gumbel_temperature: Optional[float] = field(
default=2.0, metadata={"help": "Maximum temperature for gumbel softmax."}
)
min_gumbel_temperature: Optional[float] = field(
default=0.5, metadata={"help": "Minimum temperature for gumbel softmax."}
)
gumbel_temperature_decay: Optional[float] = field(
default=0.999995, metadata={"help": "Decay of gumbel temperature during training."}
)
def configure_logger(model_args: ModelArguments, training_args: TrainingArguments):
logging.basicConfig(
format="%(asctime)s - %(levelname)s - %(name)s - %(message)s",
datefmt="%m/%d/%Y %H:%M:%S",
handlers=[logging.StreamHandler(sys.stdout)],
)
logging_level = logging.WARNING
if model_args.verbose_logging:
logging_level = logging.DEBUG
elif trainer_utils.is_main_process(training_args.local_rank):
logging_level = logging.INFO
logger.setLevel(logging_level)
@dataclass
class DataTrainingArguments:
"""
Arguments pertaining to what data we are going to input our model for training and eval.
Using `HfArgumentParser` we can turn this class
into argparse arguments to be able to specify them on
the command line.
"""
dataset_name: str = field(
default=None, metadata={"help": "The name of the dataset to use (via the datasets library)."}
)
dataset_config_name: Optional[str] = field(
default=None, metadata={"help": "The configuration name of the dataset to use (via the datasets library)."}
)
train_split_name: Optional[str] = field(
default="train",
metadata={
"help": "The name of the training data set split to use (via the datasets library). Defaults to 'train'"
},
)
validation_split_name: Optional[str] = field(
default="validation",
metadata={
"help": (
"The name of the validation data set split to use (via the datasets library). Defaults to 'validation'"
)
},
)
speech_file_column: Optional[str] = field(
default="file",
metadata={"help": "Column in the dataset that contains speech file path. Defaults to 'file'"},
)
overwrite_cache: bool = field(
default=False, metadata={"help": "Overwrite the cached preprocessed datasets or not."}
)
validation_split_percentage: Optional[int] = field(
default=1,
metadata={
"help": "The percentage of the train set used as validation set in case there's no validation split"
},
)
preprocessing_num_workers: Optional[int] = field(
default=None,
metadata={"help": "The number of processes to use for the preprocessing."},
)
max_duration_in_seconds: Optional[float] = field(
default=20.0, metadata={"help": "Filter audio files that are longer than `max_duration_in_seconds` seconds"}
)
@dataclass
class DataCollatorForWav2Vec2Pretraining:
"""
Data collator that will dynamically pad the inputs received and prepare masked indices
for self-supervised pretraining.
Args:
model (:class:`~transformers.Wav2Vec2ForPreTraining`):
The Wav2Vec2 model used for pretraining. The data collator needs to have access
to config and ``_get_feat_extract_output_lengths`` function for correct padding.
feature_extractor (:class:`~transformers.Wav2Vec2FeatureExtractor`):
The processor used for proccessing the data.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.tokenization_utils_base.PaddingStrategy`, `optional`, defaults to :obj:`True`):
Select a strategy to pad the returned sequences (according to the model's padding side and padding index)
among:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a single
sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
max_length (:obj:`int`, `optional`):
Maximum length of the ``input_values`` of the returned list and optionally padding length (see above).
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Cores on NVIDIA hardware with compute capability >=
7.5 (Volta).
"""
model: Wav2Vec2ForPreTraining
feature_extractor: Wav2Vec2FeatureExtractor
padding: Union[bool, str] = "longest"
pad_to_multiple_of: Optional[int] = None
max_length: Optional[int] = None
def __call__(self, features: List[Dict[str, Union[List[int], torch.Tensor]]]) -> Dict[str, torch.Tensor]:
# reformat list to dict and set to pytorch format
batch = self.feature_extractor.pad(
features,
max_length=self.max_length,
padding=self.padding,
pad_to_multiple_of=self.pad_to_multiple_of,
return_tensors="pt",
)
mask_indices_seq_length = self.model._get_feat_extract_output_lengths(batch["input_values"].shape[-1])
batch_size = batch["input_values"].shape[0]
# make sure that no loss is computed on padded inputs
if batch["attention_mask"] is not None:
# compute real output lengths according to convolution formula
output_lengths = self.model._get_feat_extract_output_lengths(batch["attention_mask"].sum(-1)).to(
torch.long
)
attention_mask = torch.zeros(
(batch_size, mask_indices_seq_length), dtype=torch.long, device=batch["input_values"].device
)
# these two operations makes sure that all values
# before the output lengths indices are attended to
attention_mask[
(torch.arange(attention_mask.shape[0], device=batch["input_values"].device), output_lengths - 1)
] = 1
attention_mask = attention_mask.flip([-1]).cumsum(-1).flip([-1]).bool()
# sample randomly masked indices
batch["mask_time_indices"] = _compute_mask_indices(
(batch_size, mask_indices_seq_length),
self.model.config.mask_time_prob,
self.model.config.mask_time_length,
attention_mask=attention_mask,
min_masks=2,
)
return batch
class Wav2Vec2PreTrainer(Trainer):
"""
Subclassed :class:`~transformers.Trainer` for Wav2Vec2-like pretraining. Trainer can decay gumbel softmax temperature during training.
"""
def __init__(self, *args, max_gumbel_temp=1, min_gumbel_temp=0, gumbel_temp_decay=1.0, **kwargs):
super().__init__(*args, **kwargs)
self.num_update_step = 0
self.max_gumbel_temp = max_gumbel_temp
self.min_gumbel_temp = min_gumbel_temp
self.gumbel_temp_decay = gumbel_temp_decay
def training_step(self, model: nn.Module, inputs: Dict[str, Union[torch.Tensor, Any]]) -> torch.Tensor:
"""
Perform a training step on a batch of inputs.
Subclass and override to inject custom behavior.
Args:
model (:obj:`nn.Module`):
The model to train.
inputs (:obj:`Dict[str, Union[torch.Tensor, Any]]`):
The inputs and targets of the model.
The dictionary will be unpacked before being fed to the model. Most models expect the targets under the
argument :obj:`labels`. Check your model's documentation for all accepted arguments.
Return:
:obj:`torch.Tensor`: The tensor with training loss on this batch.
"""
model.train()
inputs = self._prepare_inputs(inputs)
if self.use_amp:
with autocast():
loss = self.compute_loss(model, inputs)
else:
loss = self.compute_loss(model, inputs)
if self.args.n_gpu > 1 or self.deepspeed:
if model.module.config.ctc_loss_reduction == "mean":
loss = loss.mean()
elif model.module.config.ctc_loss_reduction == "sum":
loss = loss.sum() / (inputs["mask_time_indices"]).sum()
else:
raise ValueError(f"{model.config.ctc_loss_reduction} is not valid. Choose one of ['mean', 'sum']")
if self.args.gradient_accumulation_steps > 1:
loss = loss / self.args.gradient_accumulation_steps
if self.use_amp:
self.scaler.scale(loss).backward()
elif self.use_apex:
with amp.scale_loss(loss, self.optimizer) as scaled_loss:
scaled_loss.backward()
elif self.deepspeed:
self.deepspeed.backward(loss)
else:
loss.backward()
self.num_update_step += 1
# make sure gumbel softmax temperature is decayed
if self.args.n_gpu > 1 or self.deepspeed:
model.module.set_gumbel_temperature(
max(self.max_gumbel_temp * self.gumbel_temp_decay**self.num_update_step, self.min_gumbel_temp)
)
else:
model.set_gumbel_temperature(
max(self.max_gumbel_temp * self.gumbel_temp_decay**self.num_update_step, self.min_gumbel_temp)
)
return loss.detach()
def main():
# See all possible arguments in src/transformers/training_args.py
# or by passing the --help flag to this script.
# We now keep distinct sets of args, for a cleaner separation of concerns.
parser = HfArgumentParser((ModelArguments, DataTrainingArguments, TrainingArguments))
model_args, data_args, training_args = parser.parse_args_into_dataclasses()
configure_logger(model_args, training_args)
# Downloading and loading a dataset from the hub.
datasets = load_dataset(data_args.dataset_name, data_args.dataset_config_name, cache_dir=model_args.cache_dir)
if "validation" not in datasets.keys():
# make sure only "validation" and "train" keys remain"
datasets = DatasetDict()
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}[:{data_args.validation_split_percentage}%]",
cache_dir=model_args.cache_dir,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}[{data_args.validation_split_percentage}%:]",
cache_dir=model_args.cache_dir,
)
else:
# make sure only "validation" and "train" keys remain"
datasets = DatasetDict()
datasets["validation"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split="validation",
cache_dir=model_args.cache_dir,
)
datasets["train"] = load_dataset(
data_args.dataset_name,
data_args.dataset_config_name,
split=f"{data_args.train_split_name}",
cache_dir=model_args.cache_dir,
)
# only normalized-inputs-training is supported
feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
model_args.model_name_or_path, cache_dir=model_args.cache_dir, do_normalize=True
)
def prepare_dataset(batch):
# check that all files have the correct sampling rate
batch["speech"], _ = librosa.load(batch[data_args.speech_file_column], sr=feature_extractor.sampling_rate)
return batch
# load audio files into numpy arrays
vectorized_datasets = datasets.map(
prepare_dataset, num_proc=data_args.preprocessing_num_workers, remove_columns=datasets["train"].column_names
)
# filter audio files that are too long
vectorized_datasets = vectorized_datasets.filter(
lambda data: len(data["speech"]) < int(data_args.max_duration_in_seconds * feature_extractor.sampling_rate)
)
def normalize(batch):
return feature_extractor(batch["speech"], sampling_rate=feature_extractor.sampling_rate)
# normalize and transform to `BatchFeatures`
vectorized_datasets = vectorized_datasets.map(
normalize,
batched=True,
num_proc=data_args.preprocessing_num_workers,
load_from_cache_file=not data_args.overwrite_cache,
remove_columns=vectorized_datasets["train"].column_names,
)
# pretraining is only supported for "newer" stable layer norm architecture
# apply_spec_augment has to be True, mask_feature_prob has to be 0.0
config = Wav2Vec2Config.from_pretrained(
model_args.model_name_or_path,
cache_dir=model_args.cache_dir,
gradient_checkpointing=training_args.gradient_checkpointing,
)
if not config.do_stable_layer_norm or config.feat_extract_norm != "layer":
raise ValueError(
"PreTraining is only supported for ``config.do_stable_layer_norm=True`` and"
" ``config.feat_extract_norm='layer'"
)
model = Wav2Vec2ForPreTraining(config)
data_collator = DataCollatorForWav2Vec2Pretraining(model=model, feature_extractor=feature_extractor)
trainer = Wav2Vec2PreTrainer(
model=model,
data_collator=data_collator,
args=training_args,
train_dataset=vectorized_datasets["train"],
eval_dataset=vectorized_datasets["validation"],
tokenizer=feature_extractor,
max_gumbel_temp=model_args.max_gumbel_temperature,
min_gumbel_temp=model_args.min_gumbel_temperature,
gumbel_temp_decay=model_args.gumbel_temperature_decay,
)
trainer.train()
if __name__ == "__main__":
main()
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/FINE_TUNE_XLSR_WAV2VEC2.md | # Fine-Tuning week of XLSR-Wav2Vec2 on 60 languages 🌍
Welcome to the fine-tuning week! The goal of this week is to have state-of-the-art automatic speech recognition (ASR) models in as many languages as possible. The fine-tuning week ends on Friday, the 26th March at midnight PST time.
Participants are encouraged to fine-tune the pretrained [facebook/wav2vec2-large-xlsr-53](https://huggingface.co/facebook/wav2vec2-large-xlsr-53) checkpoint on one or more of the 60 languages of [Common Voice dataset](https://commonvoice.mozilla.org/en/datasets).
Furthermore, it is very much appreciated if participants fine-tune XLSR-Wav2Vec2 on a language that is not included in the Common Voice dataset.
All fine-tuned models uploaded until Friday, the 26th March midnight PST, will be taken into account for competition, and the best model per language will be awarded a prize if the best model performs reasonably well.
The testing data to evaluate the models will be the official [Common Voice dataset](https://commonvoice.mozilla.org/en/datasets) *`test data`* of version 6.1. Again, participants are very much encouraged to fine-tune XLSR-Wav2Vec2 on languages that are not found in the Common Voice dataset since those languages are even more likely to be underrepresented in the speech community.
Each model fine-tuned on a language not found in Common Voice, will be evaluated by the Hugging Face team after Friday, the 26th March at midnight PST, and if the model performs reasonably well, the model receives a prize as well.
For more information on which data can be used for training, how the models are evaluated exactly, and what type of data preprocessing can be used, please see ["Training and Evaluation Rules"](#training-and-evaluation-rules).
**Please keep in mind:**
The spirit of the fine-tuning week is to provide state-of-the-art speech recognition in as many languages as possible to the community!
So while we encourage healthy competition between people/groups of the same language so that better results are obtained, it is extremely important that we help each other and share our insights with the whole team/community.
What matters in the end is what has been achieved by the team as a whole during the fine-tuning week.
That being said, we strongly encourage people to share tips & tricks on the forum or Slack, help each other when team members encounter bugs, and work in groups.
To make it easier to share and help, forum threads have been created under the name {language} ASR: Fine-Tuning Wav2Vec2, e.g. here.
It is very much possible that prizes will be given to groups of people instead of individuals. Also, don't hesitate to ask questions, propose improvements to the organization, to the material given to participants, etc...🤗
## Table of Contents
- [Organization of the fine tuning week](#organization-of-the-fine-tuning-week)
- [How to fine tune XLSR Wav2Vec2](#how-to-fine-tune-xlsr-wav2vec2)
- [Google colab setup](#google-colab-setup)
- [Local machine](#local-machine)
- [How to upload my trained checkpoint](#how-to-upload-my-trained-checkpoint)
- [How to create the README](#how-to-create-the-readme)
- [How to evaluate my trained checkpoint](#how-to-evaluate-my-trained-checkpoint)
- [Rules of training and evaluation](#rules-of-training-and-evaluation)
- [Tips and tricks](#tips-and-tricks)
- [How to combine multiple datasests into one](#how-to-combine-multiple-datasets-into-one)
- [How to effectively preprocess the data](#how-to-effectively-preprocess-the-data)
- [How to efficiently preproces the data](#how-to-do-efficiently-load-datasets-with-limited-ram-and-hard-drive-space)
- [How to do hyperparameter tuning](#how-to-do-hyperparameter-tuning)
- [How to preprocess and evaluate character based languages](#how-to-preprocess-and-evaluate-character-based-languages)
- [Further reading material](#further-reading-material)
- [FAQ](#faq)
## Organization of the fine tuning week
The week officially starts on 22.03.2021 and ends on 29.03.2021, but you are more than welcome to start fine-tuning models before the start date.
General questions you might have, general problems you encounter, and general tips can be shared directly on the Slack channel (see [this post](https://discuss.huggingface.co/t/open-to-the-community-xlsr-wav2vec2-fine-tuning-week-for-low-resource-languages/4467) on how to be added to Slack).
More language-specific questions or specific bugs should be posted on the [forum](https://discuss.huggingface.co/) (feel free to use already existing language-specific threads, *e.g.* [this one](https://discuss.huggingface.co/t/arabic-asr-fine-tuning-wav2vec2/4608) or open a new one if there is no thread for your language yet) or directly on [github](https://github.com/huggingface/transformers) if you think some code or document needs correction/improvement.
Starting on Monday, the 22.03.2021, the Hugging Face team will try to provide an overview of currently trained models along with their evaluation results.
All the necessary information on:
- How to fine-tune the XLSR model
- How to upload the model
- How to share your evaluation results & training/eval script
- What are the training/evaluation rules
can be found in the sections below. If something is still unclear, feel free to drop a message in the Slack channel.
## How to fine tune XLSR Wav2Vec2
This chapter gives an in-detail explanation of how to fine-tune [Facebook's multi-lingual Wav2vec2](https://huggingface.co/facebook/wav2vec2-large-xlsr-53) on any language of the [Common Voice dataset](https://commonvoice.mozilla.org/en/datasets).
Two possible setups can be used to fine-tune Wav2Vec2. The easiest setup is to simply use [google colab](https://colab.research.google.com/). It is possible to train the full model in a *free* google colab, but it is recommended to use google colab pro since it is more stable.
The other option is to run a script locally. While this can be more difficult to set up, it also means that you have more control over the training run and probably access to better GPUs than you would have in a google colab.
For small datasets, it is usually totally sufficient to train your model
in a google colab. For larger and thus more memory-intensive datasets, it is probably
better to fine-tune the model locally.
For each option, we explain in detail how to fine-tune XLSR-Wav2Vec2 in the following.
### Google colab setup
**Note**: Instead of reading the following section, you can simply watch [this](https://www.youtube.com/watch?v=UynYn2C3tI0&ab_channel=PatrickvonPlaten) video, where Patrick explains how to adapt the google colab for your specific language.
**1.**: If you plan on training XLSR-Wav2Vec2 in a google colab, you should first make sure to have a valid gmail account. You can sign up for a gmail account [here](https://accounts.google.com/signup/v2/webcreateaccount?hl=en&flowName=GlifWebSignIn&flowEntry=SignUp).
Having successfully signed up for gmail, you can now sign in to your account to make sure you are logged in when opening new tabs in your browser.
**2.**: Next, head over to the official [Fine-Tune XLSR-Wav2Vec2 with 🤗 Transformes](https://colab.research.google.com/github/patrickvonplaten/notebooks/blob/master/Fine_Tune_XLSR_Wav2Vec2_on_Turkish_ASR_with_%F0%9F%A4%97_Transformers.ipynb) google colab. The first thing you should do is to make a copy of it - click `->File->Save a copy in Drive`. This should save a copy of the google colab in your google drive.
**3.**: Now it is highly recommended to carefully read the google colab without running the cells yet.
You should get an understanding of the model is trained and what you will have to change when training the model in a different language.
Having done so, you can again head over to [Common Voice](https://commonvoice.mozilla.org/en/datasets) and pick a language you want to fine-tune [facebook/wav2vec2-large-xlsr-53](https://huggingface.co/facebook/wav2vec2-large-xlsr-53) on. Make sure you remember the language code (For each language, you can find it under the field "*Version*". It corresponds to **all characters before the first underscore**. *E.g.* for Greek it is *el*, while for Irish it is *ga-IE*.
**4.**: Now you should replace the language code used for the demo of this colab, being *tr* for Turkish with the language code corresponding to the language you just chose in the **second** cell of the google colab. This will load the correct data for your language.
**5.**: It is time to start running the google colab! Make sure that you have selected "GPU" as your runtime environment and you can start running the cells one-by-one. Make sure you attentively read the text between the cells to understand what is happening and to eventually correct the cells to improve the fine-tuning script for your language. Things you might want to improve/change:
- Data loading. It is very much recommended to use more than just the official training data of the Common Voice dataset. If you find more data on the internet, feel free to use it! Check out the section ["How to combined multiple datasets into one"](#how-to-combine-multiple-datasets-into-one)
- Data Processing. You should adapt the data processing to your specific language. In data processing, you should make the data more uniform so that it will be easier for the model to learn how to classify speech in your data. Here it can be really helpful to be proficient in the language to know what can be done to simplify the language without changing the meaning.
Data processing methods include, but are not limited to:
- Normalizing your data. Make sure all characters are lower-cased.
- Remove typographical symbols and punctuation marks. See a list [here](https://en.wikipedia.org/wiki/List_of_typographical_symbols_and_punctuation_marks). Be careful to not remove punctuation marks that can change the meaning of the sentence. *E.g.* you should not remove the single quotation mark `'` in English, as it would change the words `"it's"` to `"its"` which is a different word and has thus a different meaning. For more tips on data processing see ["How to effectively preprocess the data"](#how-to-effectively-preprocess-the-data")
- Hyperparameter Tuning. Depending on the size of the data you should probably change the hyperparameters of the google colab. You can change any parameter you like. For more tips and tricks see ["How to do hyperparameter tuning for my language"](#how-to-do-hyperparameter-tuning-for-my-language)
When running the google colab make sure that you uncomment the cell corresponding to mounting your google drive to the colab. This cell looks as follows:
```python
# from google.colab import drive
# drive.mount('/content/gdrive/')
```
Uncomment it, run it, and follow the instructions to mount your google drive. This way you can be sure that the model parameters and created tokenizer & feature extractor files are saved in **your** google drive.
Also, make sure that you uncomment the cells corresponding to save the preprocessing files and trained model weights to your drive. Otherwise, you might lose a trained model if you google crashes. You should change the name of your model from `wav2vec2-large-xlsr-turkish-demo` to `wav2vec2-large-xlsr-{your_favorite_name}`.
Those cells correspond to:
```python
# processor.save_pretrained("/content/gdrive/MyDrive/wav2vec2-large-xlsr-turkish-demo")
```
and the line:
```python
output_dir="/content/gdrive/MyDrive/wav2vec2-large-xlsr-turkish-demo",
```
further below (which should already be uncommented).
Having finished the training you should find the following files/folders under the folder `wav2vec2-large-xlsr-{your_favorite_name}` in your google drive:
- `preprocessor_config.json` - the parameters of the feature extractor
- `special_tokens_map.json` - the special token map of the tokenizer
- `tokenizer_config.json` - the parameters of the tokenizer
- `vocab.json` - the vocabulary of the tokenizer
- `checkpoint-{...}/` - the saved checkpoints saved during training. Each checkpoint should contain the files: `config.json`, `optimizer.pt`, `pytorch_model.bin`, `scheduler.pt`, `training_args.bin`. The files `config.json` and `pytorch_model.bin` define your model.
If you are happy with your training results it is time to upload your model!
Download the following files to your local computer: **`preprocessor_config.json`, `special_tokens_map.json`, `tokenizer_config.json`, `vocab.json`, `config.json`, `pytorch_model.bin`**. Those files fully define a XLSR-Wav2Vec2 model checkpoint.
Awesome you have successfully trained a XLSR-Wav2Vec2 model 😎. Now you can jump to the section ["How to upload my trained checkpoint"](#how-to-upload-my-trained-checkpoint)
### Local machine
We have provided `run_common_voice.py` script to run fine-tuning on local machine. The script is similar to the colab but allows you to launch training using command line, save and continue training from previous checkpoints and launch training on multiple GPUs.
For bigger datasets, we recommend to train Wav2Vec2 locally instead of in a google colab.
1. To begin with, we should clone transformers localy and install all the required packages.
First, you need to clone the `transformers` repo with:
```
$ git clone https://github.com/huggingface/transformers.git
```
Second, head over to the `examples/research_projects/wav2vec2` directory, where the `run_common_voice.py` script is located.
```
$ cd transformers/examples/research_projects/wav2vec2
```
Third, install the required packages. The
packages are listed in the `requirements.txt` file and can be installed with
```
$ pip install -r requirements.txt
```
**Note**: Installing the latest version of `torchaudio` will also upgrade `torch` to it's latest stable version. If you are using specific version of `torch` then make sure
to use the correct `torchaudio` version compatible with your version of `torch`. By default the `requirements.txt` will install the latest version of `torchaudio`.
2. Next, take a look at the `run_common_voice.py` script to get an understanding of how it works. In short the script does the following:
- Load the given common voice dataset
- Create vocab for the language
- Load the model with given hyperparameters
- Pre-process the dataset to input into the model
- Run training
- Run evaluation
3. The following examples show how you can launch fine-tuning for the common voice dataset.
Here we will run the script on the *Turkish* Common Voice dataset for demonstration purposes.
**To lanuch fine-tuninig on a single GPU:**
```bash
python run_common_voice.py \
--model_name_or_path="facebook/wav2vec2-large-xlsr-53" \
--dataset_config_name="tr" \ # use this argument to specify the language code
--output_dir=./wav2vec2-large-xlsr-turkish-demo \
--overwrite_output_dir \
--num_train_epochs="5" \
--per_device_train_batch_size="16" \
--learning_rate="3e-4" \
--warmup_steps="500" \
--evaluation_strategy="steps" \
--save_steps="400" \
--eval_steps="400" \
--logging_steps="400" \
--save_total_limit="3" \
--freeze_feature_extractor \
--feat_proj_dropout="0.0" \
--layerdrop="0.1" \
--gradient_checkpointing \
--fp16 \
--group_by_length \
--do_train --do_eval
```
**To lanuch fine-tuninig on multiple GPUs:**
```bash
python -m torch.distributed.launch \
--nproc_per_node 4 run_common_voice.py \
--model_name_or_path="facebook/wav2vec2-large-xlsr-53" \
--dataset_config_name="tr" \ # use this argument to specify the language code
--output_dir=./wav2vec2-large-xlsr-turkish-demo \
--overwrite_output_dir \
--num_train_epochs="5" \
--per_device_train_batch_size="16" \
--learning_rate="3e-4" \
--warmup_steps="500" \
--evaluation_strategy="steps" \
--save_steps="400" \
--eval_steps="400" \
--logging_steps="400" \
--save_total_limit="3" \
--freeze_feature_extractor \
--feat_proj_dropout="0.0" \
--layerdrop="0.1" \
--gradient_checkpointing \
--fp16 \
--group_by_length \
--do_train --do_eval
```
The above command will launch the training on 4 GPUs. Use the `--nproc_per_node` option to specify the number of GPUs.
Once the training is finished, the model and checkpoints will be saved under the directory specified by the `--output_dir` argument.
4. The script also allows you to resume training from the last saved checkpoint. To resume training from last saved checkpoint remove the `--overwrite_output_dir` option and run the same command again. And to continue training from a specific checkpoint, keep the `--overwrite_output_dir`
option and pass the path of the checkpoint as `--model_name_or_path`.
As the script is based on the `Trainer` API, refer to the [Trainer docs](https://huggingface.co/transformers/main_classes/trainer.html) for more information about ``Trainer`` and ``TrainingArguments``.
[OVH cloud](https://www.ovh.com/world/) has generously offered free compute for this sprint. Please refer to [this video](https://www.youtube.com/watch?v=2hlkWAESMk8&ab_channel=Databuzzword) to get started with OVH.
## How to upload my trained checkpoint
To upload your trained checkpoint, you have to create a new model repository on the 🤗 model hub, from this page: https://huggingface.co/new
> You can also follow the more in-depth instructions [here](https://huggingface.co/transformers/model_sharing.html) if needed.
Having created your model repository on the hub, you should clone it locally:
```bash
git lfs install
git clone https://huggingface.co/username/your-model-name
```
Then and add the following files that fully define a XLSR-Wav2Vec2 checkpoint into the repository. You should have added the following files.
- `preprocessor_config.json`
- `special_tokens_map.json`
- `tokenizer_config.json`
- `vocab.json`
- `config.json`
- `pytorch_model.bin`
Having added the above files, you should run the following to push files to your model repository.
```
git add . && git commit -m "Add model files" && git push
```
The next **very important** step is to create the model card. For people to use your fine-tuned
model it is important to understand:
- What kind of model is it?
- What is your model useful for?
- What data was your model trained on?
- How well does your model perform?
All these questions should be answered in a model card which is the first thing people see when
visiting your model on the hub under `https://huggingface.co/{your_username}/{your_modelname}`.
**Note**:
It is extremely important that you add this model card or else we cannot find your model and thus cannot take the model into
account for the final evaluation.
### How to create the readme
The model card is written in markdown (`.md`) and should be added by simply clicking on the "Add model card" button which is found on the top right corner.
You are encouraged to copy-paste the following template into your model card.
**Make sure that** instead of copying the output of the markdown file you copy the **raw** version of the following part.
To get the raw version of this file, simply click on the "`raw`" button on the top right corner of this file next to "`blame`" and copy everything below the marker.
Make sure that you read and consequently remove all #TODO: statements from the model card.
<======================Copy **raw** version from here=========================
---
language: {lang_id} #TODO: replace {lang_id} in your language code here. Make sure the code is one of the *ISO codes* of [this](https://huggingface.co/languages) site.
datasets:
- common_voice #TODO: remove if you did not use the common voice dataset
- TODO: add more datasets if you have used additional datasets. Make sure to use the exact same
dataset name as the one found [here](https://huggingface.co/datasets). If the dataset can not be found in the official datasets, just give it a new name
metrics:
- wer
tags:
- audio
- automatic-speech-recognition
- speech
- xlsr-fine-tuning-week
license: apache-2.0
model-index:
- name: {human_readable_name} #TODO: replace {human_readable_name} with a name of your model as it should appear on the leaderboard. It could be something like `Elgeish XLSR Wav2Vec2 Large 53`
results:
- task:
name: Speech Recognition
type: automatic-speech-recognition
dataset:
name: Common Voice {lang_id} #TODO: replace {lang_id} in your language code here. Make sure the code is one of the *ISO codes* of [this](https://huggingface.co/languages) site.
type: common_voice
args: {lang_id} #TODO: replace {lang_id} in your language code here. Make sure the code is one of the *ISO codes* of [this](https://huggingface.co/languages) site.
metrics:
- name: Test WER
type: wer
value: {wer_result_on_test} #TODO (IMPORTANT): replace {wer_result_on_test} with the WER error rate you achieved on the common_voice test set. It should be in the format XX.XX (don't add the % sign here). **Please** remember to fill out this value after you evaluated your model, so that your model appears on the leaderboard. If you fill out this model card before evaluating your model, please remember to edit the model card afterward to fill in your value
---
# Wav2Vec2-Large-XLSR-53-{language} #TODO: replace language with your {language}, *e.g.* French
Fine-tuned [facebook/wav2vec2-large-xlsr-53](https://huggingface.co/facebook/wav2vec2-large-xlsr-53) on {language} using the [Common Voice](https://huggingface.co/datasets/common_voice), ... and ... dataset{s}. #TODO: replace {language} with your language, *e.g.* French and eventually add more datasets that were used and eventually remove common voice if model was not trained on common voice
When using this model, make sure that your speech input is sampled at 16kHz.
## Usage
The model can be used directly (without a language model) as follows:
```python
import torch
import torchaudio
from datasets import load_dataset
from transformers import Wav2Vec2ForCTC, Wav2Vec2Processor
test_dataset = load_dataset("common_voice", "{lang_id}", split="test[:2%]") #TODO: replace {lang_id} in your language code here. Make sure the code is one of the *ISO codes* of [this](https://huggingface.co/languages) site.
processor = Wav2Vec2Processor.from_pretrained("{model_id}") #TODO: replace {model_id} with your model id. The model id consists of {your_username}/{your_modelname}, *e.g.* `elgeish/wav2vec2-large-xlsr-53-arabic`
model = Wav2Vec2ForCTC.from_pretrained("{model_id}") #TODO: replace {model_id} with your model id. The model id consists of {your_username}/{your_modelname}, *e.g.* `elgeish/wav2vec2-large-xlsr-53-arabic`
resampler = torchaudio.transforms.Resample(48_000, 16_000)
# Preprocessing the datasets.
# We need to read the aduio files as arrays
def speech_file_to_array_fn(batch):
speech_array, sampling_rate = torchaudio.load(batch["path"])
batch["speech"] = resampler(speech_array).squeeze().numpy()
return batch
test_dataset = test_dataset.map(speech_file_to_array_fn)
inputs = processor(test_dataset[:2]["speech"], sampling_rate=16_000, return_tensors="pt", padding=True)
with torch.no_grad():
logits = model(inputs.input_values, attention_mask=inputs.attention_mask).logits
predicted_ids = torch.argmax(logits, dim=-1)
print("Prediction:", processor.batch_decode(predicted_ids))
print("Reference:", test_dataset[:2]["sentence"])
```
## Evaluation
The model can be evaluated as follows on the {language} test data of Common Voice. # TODO: replace #TODO: replace language with your {language}, *e.g.* French
```python
import torch
import torchaudio
from datasets import load_dataset, load_metric
from transformers import Wav2Vec2ForCTC, Wav2Vec2Processor
import re
test_dataset = load_dataset("common_voice", "{lang_id}", split="test") #TODO: replace {lang_id} in your language code here. Make sure the code is one of the *ISO codes* of [this](https://huggingface.co/languages) site.
wer = load_metric("wer")
processor = Wav2Vec2Processor.from_pretrained("{model_id}") #TODO: replace {model_id} with your model id. The model id consists of {your_username}/{your_modelname}, *e.g.* `elgeish/wav2vec2-large-xlsr-53-arabic`
model = Wav2Vec2ForCTC.from_pretrained("{model_id}") #TODO: replace {model_id} with your model id. The model id consists of {your_username}/{your_modelname}, *e.g.* `elgeish/wav2vec2-large-xlsr-53-arabic`
model.to("cuda")
chars_to_ignore_regex = '[\,\?\.\!\-\;\:\"\“]' # TODO: adapt this list to include all special characters you removed from the data
resampler = torchaudio.transforms.Resample(48_000, 16_000)
# Preprocessing the datasets.
# We need to read the aduio files as arrays
def speech_file_to_array_fn(batch):
batch["sentence"] = re.sub(chars_to_ignore_regex, '', batch["sentence"]).lower()
speech_array, sampling_rate = torchaudio.load(batch["path"])
batch["speech"] = resampler(speech_array).squeeze().numpy()
return batch
test_dataset = test_dataset.map(speech_file_to_array_fn)
# Preprocessing the datasets.
# We need to read the aduio files as arrays
def evaluate(batch):
inputs = processor(batch["speech"], sampling_rate=16_000, return_tensors="pt", padding=True)
with torch.no_grad():
logits = model(inputs.input_values.to("cuda"), attention_mask=inputs.attention_mask.to("cuda")).logits
pred_ids = torch.argmax(logits, dim=-1)
batch["pred_strings"] = processor.batch_decode(pred_ids)
return batch
result = test_dataset.map(evaluate, batched=True, batch_size=8)
print("WER: {:2f}".format(100 * wer.compute(predictions=result["pred_strings"], references=result["sentence"])))
```
**Test Result**: XX.XX % # TODO: write output of print here. IMPORTANT: Please remember to also replace {wer_result_on_test} at the top of with this value here. tags.
## Training
The Common Voice `train`, `validation`, and ... datasets were used for training as well as ... and ... # TODO: adapt to state all the datasets that were used for training.
The script used for training can be found [here](...) # TODO: fill in a link to your training script here. If you trained your model in a colab, simply fill in the link here. If you trained the model locally, it would be great if you could upload the training script on github and paste the link here.
=======================To here===============================>
Your model in then available under *huggingface.co/{your_username}/{your_chosen_xlsr-large_model_name}* for everybody to use 🎉.
## How to evaluate my trained checkpoint
Having uploaded your model, you should now evaluate your model in a final step. This should be as simple as
copying the evaluation code of your model card into a python script and running it. Make sure to note
the final result on the model card **both** under the YAML tags at the very top **and** below your evaluation code under "Test Results".
## Rules of training and evaluation
In this section, we will quickly go over what data is allowed to be used as training
data, what kind of data preprocessing is allowed be used, and how the model should be evaluated.
To make it very simple regarding the first point: **All data except the official common voice `test` data set can be used as training data**. For models trained in a language that is not included in Common Voice, the author of the model is responsible to
leave a reasonable amount of data for evaluation.
Second, the rules regarding the preprocessing are not that as straight-forward. It is allowed (and recommended) to
normalize the data to only have lower-case characters. It is also allowed (and recommended) to remove typographical
symbols and punctuation marks. A list of such symbols can *e.g.* be fonud [here](https://en.wikipedia.org/wiki/List_of_typographical_symbols_and_punctuation_marks) - however here we already must be careful. We should **not** remove a symbol that
would change the meaning of the words, *e.g.* in English, we should not remove the single quotation mark `'` since it
would change the meaning of the word `"it's"` to `"its"` which would then be incorrect. So the golden rule here is to
not remove any characters that could change the meaning of a word into another word. This is not always obvious and should
be given some consideration. As another example, it is fine to remove the "Hypen-minus" sign "`-`" since it doesn't change the
meaninng of a word to another one. *E.g.* "`fine-tuning`" would be changed to "`finetuning`" which has still the same meaning.
Since those choices are not always obvious when in doubt feel free to ask on Slack or even better post on the forum, as was
done, *e.g.* [here](https://discuss.huggingface.co/t/spanish-asr-fine-tuning-wav2vec2/4586).
## Tips and tricks
This section summarizes a couple of tips and tricks across various topics. It will continously be updated during the week.
### How to combine multiple datasets into one
Check out [this](https://discuss.huggingface.co/t/how-to-combine-local-data-files-with-an-official-dataset/4685) post.
### How to effectively preprocess the data
### How to do efficiently load datasets with limited ram and hard drive space
Check out [this](https://discuss.huggingface.co/t/german-asr-fine-tuning-wav2vec2/4558/8?u=patrickvonplaten) post.
### How to do hyperparameter tuning
### How to preprocess and evaluate character based languages
## Further reading material
It is recommended that take some time to read up on how Wav2vec2 works in theory.
Getting a better understanding of the theory and the inner mechanisms of the model often helps when fine-tuning the model.
**However**, if you don't like reading blog posts/papers, don't worry - it is by no means necessary to go through the theory to fine-tune Wav2Vec2 on your language of choice.
If you are interested in learning more about the model though, here are a couple of resources that are important to better understand Wav2Vec2:
- [Facebook's Wav2Vec2 blog post](https://ai.facebook.com/blog/wav2vec-state-of-the-art-speech-recognition-through-self-supervision/)
- [Official Wav2Vec2 paper](https://arxiv.org/abs/2006.11477)
- [Official XLSR Wav2vec2 paper](https://arxiv.org/pdf/2006.13979.pdf)
- [Hugging Face Blog](https://huggingface.co/blog/fine-tune-xlsr-wav2vec2)
- [How does CTC (Connectionist Temporal Classification) work](https://distill.pub/2017/ctc/)
It helps to have a good understanding of the following points:
- How was XLSR-Wav2Vec2 pretrained? -> Feature vectors were masked and had to be predicted by the model; very similar in spirit to masked language model of BERT.
- What parts of XLSR-Wav2Vec2 are responsible for what? What is the feature extractor part used for? -> extract feature vectors from the 1D raw audio waveform; What is the transformer part doing? -> mapping feature vectors to contextualized feature vectors; ...
- What part of the model needs to be fine-tuned? -> The pretrained model **does not** include a language head to classify the contextualized features to letters. This is randomly initialized when loading the pretrained checkpoint and has to be fine-tuned. Also, note that the authors recommend to **not** further fine-tune the feature extractor.
- What data was used to XLSR-Wav2Vec2? The checkpoint we will use for further fine-tuning was pretrained on **53** languages.
- What languages are considered to be similar by XLSR-Wav2Vec2? In the official [XLSR Wav2Vec2 paper](https://arxiv.org/pdf/2006.13979.pdf), the authors show nicely which languages share a common contextualized latent space. It might be useful for you to extend your training data with data of other languages that are considered to be very similar by the model (or you).
## FAQ
- Can a participant fine-tune models for more than one language?
Yes! A participant can fine-tune models in as many languages she/he likes
- Can a participant use extra data (apart from the common voice data)?
Yes! All data except the official common voice `test data` can be used for training.
If a participant wants to train a model on a language that is not part of Common Voice (which
is very much encouraged!), the participant should make sure that some test data is held out to
make sure the model is not overfitting.
- Can we fine-tune for high-resource languages?
Yes! While we do not really recommend people to fine-tune models in English since there are
already so many fine-tuned speech recognition models in English. However, it is very much
appreciated if participants want to fine-tune models in other "high-resource" languages, such
as French, Spanish, or German. For such cases, one probably needs to train locally and apply
might have to apply tricks such as lazy data loading (check the ["Lazy data loading"](#how-to-do-lazy-data-loading) section for more details).
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/README.md | **NOTE**: This example is outdated and is not longer actively maintained. Please
follow the new instructions of fine-tuning Wav2Vec2 [here](https://github.com/huggingface/transformers/blob/main/examples/pytorch/speech-recognition/README.md)
## Fine-tuning Wav2Vec2
The `run_asr.py` script allows one to fine-tune pretrained Wav2Vec2 models that can be found [here](https://huggingface.co/models?search=facebook/wav2vec2).
This finetuning script can also be run as a google colab [TODO: here]( ).
### Fine-Tuning with TIMIT
Let's take a look at the [script](./finetune_base_timit_asr.sh) used to fine-tune [wav2vec2-base](https://huggingface.co/facebook/wav2vec2-base)
with the [TIMIT dataset](https://huggingface.co/datasets/timit_asr):
```bash
#!/usr/bin/env bash
python run_asr.py \
--output_dir="./wav2vec2-base-timit-asr" \
--num_train_epochs="30" \
--per_device_train_batch_size="20" \
--per_device_eval_batch_size="20" \
--evaluation_strategy="steps" \
--save_steps="500" \
--eval_steps="100" \
--logging_steps="50" \
--learning_rate="5e-4" \
--warmup_steps="3000" \
--model_name_or_path="facebook/wav2vec2-base" \
--fp16 \
--dataset_name="timit_asr" \
--train_split_name="train" \
--validation_split_name="test" \
--orthography="timit" \
--preprocessing_num_workers="$(nproc)" \
--group_by_length \
--freeze_feature_extractor \
--verbose_logging \
```
The resulting model and inference examples can be found [here](https://huggingface.co/elgeish/wav2vec2-base-timit-asr).
Some of the arguments above may look unfamiliar, let's break down what's going on:
`--orthography="timit"` applies certain text preprocessing rules, for tokenization and normalization, to clean up the dataset.
In this case, we use the following instance of `Orthography`:
```python
Orthography(
do_lower_case=True,
# break compounds like "quarter-century-old" and replace pauses "--"
translation_table=str.maketrans({"-": " "}),
)
```
The instance above is used as follows:
* creates a tokenizer with `do_lower_case=True` (ignores casing for input and lowercases output when decoding)
* replaces `"-"` with `" "` to break compounds like `"quarter-century-old"` and to clean up suspended hyphens
* cleans up consecutive whitespaces (replaces them with a single space: `" "`)
* removes characters not in vocabulary (lacking respective sound units)
`--verbose_logging` logs text preprocessing updates and when evaluating, using the validation split every `eval_steps`,
logs references and predictions.
### Fine-Tuning with Arabic Speech Corpus
Other datasets, like the [Arabic Speech Corpus dataset](https://huggingface.co/datasets/arabic_speech_corpus),
require more work! Let's take a look at the [script](./finetune_large_xlsr_53_arabic_speech_corpus.sh)
used to fine-tune [wav2vec2-large-xlsr-53](https://huggingface.co/elgeish/wav2vec2-large-xlsr-53-arabic):
```bash
#!/usr/bin/env bash
python run_asr.py \
--output_dir="./wav2vec2-large-xlsr-53-arabic-speech-corpus" \
--num_train_epochs="50" \
--per_device_train_batch_size="1" \
--per_device_eval_batch_size="1" \
--gradient_accumulation_steps="8" \
--evaluation_strategy="steps" \
--save_steps="500" \
--eval_steps="100" \
--logging_steps="50" \
--learning_rate="5e-4" \
--warmup_steps="3000" \
--model_name_or_path="elgeish/wav2vec2-large-xlsr-53-arabic" \
--fp16 \
--dataset_name="arabic_speech_corpus" \
--train_split_name="train" \
--validation_split_name="test" \
--max_duration_in_seconds="15" \
--orthography="buckwalter" \
--preprocessing_num_workers="$(nproc)" \
--group_by_length \
--freeze_feature_extractor \
--target_feature_extractor_sampling_rate \
--verbose_logging \
```
First, let's understand how this dataset represents Arabic text; it uses a format called
[Buckwalter transliteration](https://en.wikipedia.org/wiki/Buckwalter_transliteration).
We use the [lang-trans](https://github.com/kariminf/lang-trans) package to convert back to Arabic when logging.
The Buckwalter format only includes ASCII characters, some of which are non-alpha (e.g., `">"` maps to `"أ"`).
`--orthography="buckwalter"` applies certain text preprocessing rules, for tokenization and normalization, to clean up the dataset. In this case, we use the following instance of `Orthography`:
```python
Orthography(
vocab_file=pathlib.Path(__file__).parent.joinpath("vocab/buckwalter.json"),
word_delimiter_token="/", # "|" is Arabic letter alef with madda above
words_to_remove={"sil"}, # fixing "sil" in arabic_speech_corpus dataset
untransliterator=arabic.buckwalter.untransliterate,
translation_table=str.maketrans(translation_table = {
"-": " ", # sometimes used to represent pauses
"^": "v", # fixing "tha" in arabic_speech_corpus dataset
}),
)
```
The instance above is used as follows:
* creates a tokenizer with Buckwalter vocabulary and `word_delimiter_token="/"`
* replaces `"-"` with `" "` to clean up hyphens and fixes the orthography for `"ث"`
* removes words used as indicators (in this case, `"sil"` is used for silence)
* cleans up consecutive whitespaces (replaces them with a single space: `" "`)
* removes characters not in vocabulary (lacking respective sound units)
`--verbose_logging` logs text preprocessing updates and when evaluating, using the validation split every `eval_steps`,
logs references and predictions. Using the Buckwalter format, text is also logged in Arabic abjad.
`--target_feature_extractor_sampling_rate` resamples audio to target feature extractor's sampling rate (16kHz).
`--max_duration_in_seconds="15"` filters out examples whose audio is longer than the specified limit,
which helps with capping GPU memory usage.
### DeepSpeed Integration
To learn how to deploy Deepspeed Integration please refer to [this guide](https://huggingface.co/transformers/main/main_classes/deepspeed.html#deepspeed-trainer-integration).
But to get started quickly all you need is to install:
```
pip install deepspeed
```
and then use the default configuration files in this directory:
* `ds_config_wav2vec2_zero2.json`
* `ds_config_wav2vec2_zero3.json`
Here are examples of how you can use DeepSpeed:
(edit the value for `--num_gpus` to match the number of GPUs you have)
ZeRO-2:
```
PYTHONPATH=../../../src deepspeed --num_gpus 2 \
run_asr.py \
--output_dir=output_dir --num_train_epochs=2 --per_device_train_batch_size=2 \
--per_device_eval_batch_size=2 --evaluation_strategy=steps --save_steps=500 --eval_steps=100 \
--logging_steps=5 --learning_rate=5e-4 --warmup_steps=3000 \
--model_name_or_path=patrickvonplaten/wav2vec2_tiny_random_robust \
--dataset_name=hf-internal-testing/librispeech_asr_dummy --dataset_config_name=clean \
--train_split_name=validation --validation_split_name=validation --orthography=timit \
--preprocessing_num_workers=1 --group_by_length --freeze_feature_extractor --verbose_logging \
--deepspeed ds_config_wav2vec2_zero2.json
```
For ZeRO-2 with more than 1 gpu you need to use (which is already in the example configuration file):
```
"zero_optimization": {
...
"find_unused_parameters": true,
...
}
```
ZeRO-3:
```
PYTHONPATH=../../../src deepspeed --num_gpus 2 \
run_asr.py \
--output_dir=output_dir --num_train_epochs=2 --per_device_train_batch_size=2 \
--per_device_eval_batch_size=2 --evaluation_strategy=steps --save_steps=500 --eval_steps=100 \
--logging_steps=5 --learning_rate=5e-4 --warmup_steps=3000 \
--model_name_or_path=patrickvonplaten/wav2vec2_tiny_random_robust \
--dataset_name=hf-internal-testing/librispeech_asr_dummy --dataset_config_name=clean \
--train_split_name=validation --validation_split_name=validation --orthography=timit \
--preprocessing_num_workers=1 --group_by_length --freeze_feature_extractor --verbose_logging \
--deepspeed ds_config_wav2vec2_zero3.json
```
### Pretraining Wav2Vec2
The `run_pretrain.py` script allows one to pretrain a Wav2Vec2 model from scratch using Wav2Vec2's contrastive loss objective (see official [paper](https://arxiv.org/abs/2006.11477) for more information).
It is recommended to pre-train Wav2Vec2 with Trainer + Deepspeed (please refer to [this guide](https://huggingface.co/transformers/main/main_classes/deepspeed.html#deepspeed-trainer-integration) for more information).
Here is an example of how you can use DeepSpeed ZeRO-2 to pretrain a small Wav2Vec2 model:
```
PYTHONPATH=../../../src deepspeed --num_gpus 4 run_pretrain.py \
--output_dir="./wav2vec2-base-libri-100h" \
--num_train_epochs="3" \
--per_device_train_batch_size="32" \
--per_device_eval_batch_size="32" \
--gradient_accumulation_steps="2" \
--save_total_limit="3" \
--save_steps="500" \
--logging_steps="10" \
--learning_rate="5e-4" \
--weight_decay="0.01" \
--warmup_steps="3000" \
--model_name_or_path="patrickvonplaten/wav2vec2-base-libri-100h" \
--dataset_name="librispeech_asr" \
--dataset_config_name="clean" \
--train_split_name="train.100" \
--preprocessing_num_workers="4" \
--max_duration_in_seconds="10.0" \
--group_by_length \
--verbose_logging \
--fp16 \
--deepspeed ds_config_wav2vec2_zero2.json \
```
### Forced Alignment
Character level forced alignment for audio and text pairs with wav2vec2 models finetuned on ASR task for a specific language.
Inspired by [this](https://pytorch.org/tutorials/intermediate/forced_alignment_with_torchaudio_tutorial.html) Pytorch tutorial.
#### Input Formats
Input format in script.txt Input format in wavs directroy
0000 sentence1 0000.wav
0001 sentence2 0001.wav
#### Output Format
Output directory will contain 0000.txt and 0001.txt. Each file will have format like below
char score start_ms end_ms
h 0.25 1440 1520
#### Run command
```
python alignment.py \
--model_name="arijitx/wav2vec2-xls-r-300m-bengali" \
--wav_dir="./wavs"
--text_file="script.txt" \
--input_wavs_sr=48000 \
--output_dir="./out_alignment" \
--cuda
```
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/run_alignment.sh | #!/usr/bin/env bash
python alignment.py \
--model_name="arijitx/wav2vec2-xls-r-300m-bengali" \
--wav_dir="./wavs" \
--text_file="script.txt" \
--input_wavs_sr=48000 \
--output_dir="./out_alignment" \
--cuda
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/ds_config_wav2vec2_zero3.json | {
"fp16": {
"enabled": "auto",
"loss_scale": 0,
"loss_scale_window": 1000,
"initial_scale_power": 16,
"hysteresis": 2,
"min_loss_scale": 1
},
"optimizer": {
"type": "AdamW",
"params": {
"lr": "auto",
"betas": "auto",
"eps": "auto",
"weight_decay": "auto"
}
},
"scheduler": {
"type": "WarmupLR",
"params": {
"warmup_min_lr": "auto",
"warmup_max_lr": "auto",
"warmup_num_steps": "auto"
}
},
"zero_optimization": {
"stage": 3,
"offload_optimizer": {
"device": "cpu",
"pin_memory": true
},
"offload_param": {
"device": "cpu",
"pin_memory": true
},
"overlap_comm": true,
"contiguous_gradients": true,
"sub_group_size": 1e9,
"reduce_bucket_size": "auto",
"stage3_prefetch_bucket_size": "auto",
"stage3_param_persistence_threshold": "auto",
"stage3_max_live_parameters": 1e9,
"stage3_max_reuse_distance": 1e9,
"stage3_gather_16bit_weights_on_model_save": true
},
"gradient_accumulation_steps": "auto",
"gradient_clipping": "auto",
"steps_per_print": 2000,
"train_batch_size": "auto",
"train_micro_batch_size_per_gpu": "auto",
"wall_clock_breakdown": false
}
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/finetune_large_lv60_timit_asr.sh | #!/usr/bin/env bash
python run_asr.py \
--output_dir="./wav2vec2-large-lv60-timit-asr" \
--num_train_epochs="30" \
--per_device_train_batch_size="2" \
--per_device_eval_batch_size="2" \
--gradient_accumulation_steps="4" \
--evaluation_strategy="steps" \
--save_steps="500" \
--eval_steps="100" \
--logging_steps="50" \
--learning_rate="5e-4" \
--warmup_steps="3000" \
--model_name_or_path="facebook/wav2vec2-large-lv60" \
--fp16 \
--dataset_name="timit_asr" \
--train_split_name="train" \
--validation_split_name="test" \
--orthography="timit" \
--preprocessing_num_workers="$(nproc)" \
--group_by_length \
--freeze_feature_extractor \
--verbose_logging \
| 0 |
hf_public_repos/transformers/examples/research_projects | hf_public_repos/transformers/examples/research_projects/wav2vec2/ds_config_wav2vec2_zero2.json | {
"fp16": {
"enabled": "auto",
"loss_scale": 0,
"loss_scale_window": 1000,
"initial_scale_power": 16,
"hysteresis": 2,
"min_loss_scale": 1
},
"optimizer": {
"type": "AdamW",
"params": {
"lr": "auto",
"betas": "auto",
"eps": "auto",
"weight_decay": "auto"
}
},
"scheduler": {
"type": "WarmupLR",
"params": {
"warmup_min_lr": "auto",
"warmup_max_lr": "auto",
"warmup_num_steps": "auto"
}
},
"zero_optimization": {
"stage": 2,
"offload_optimizer": {
"device": "cpu",
"pin_memory": true
},
"find_unused_parameters": true,
"allgather_partitions": true,
"allgather_bucket_size": 2e8,
"overlap_comm": true,
"reduce_scatter": true,
"reduce_bucket_size": 2e8,
"contiguous_gradients": true
},
"gradient_accumulation_steps": "auto",
"gradient_clipping": "auto",
"steps_per_print": 2000,
"train_batch_size": "auto",
"train_micro_batch_size_per_gpu": "auto",
"wall_clock_breakdown": false
}
| 0 |
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