Datasets:

vedatonuryilmaz
/

te-seqdata-v1

chrom stringclasses 452 values	start int64 1 249M	end int64 24 249M	N1 int64 0 240	N2 int64 0 240	group int64 0 3	ID stringlengths 16 39	loci stringlengths 2 23 ⌀	TE_chrom stringclasses 24 values	TE_start float64 10k 249M ⌀	TE_end float64 10.4k 249M ⌀	strand stringclasses 2 values	family stringlengths 2 15 ⌀	subfamily stringclasses 111 values	class stringclasses 13 values	__index_level_0__ int64 0 4.69M	sequence stringlengths 11 500k
chr1	10,469	11,447	1	237	3	chr1:10469-11447	TAR1	chr1	10,469	11,447	null	TAR1	telo	Satellite	5,288	AGCAAGAGGGCCCGGCAGTGTCCCCAGCTGCCAGCAGGTGGGCGTGCTGCCACTACACCTTGAGCAAGAGGACCCTGCAATGTCCCTAGCTGCCAGCAGGCGGCGTGCCACCACTATACAGTAAGCAAGAGGGCCCTGCAGTGCCCCGGCGCCAGCAGGGGGCGCTGGCCACCACTCTAAGCAAGAGAGCCCTGCAGTTGCCCTAGTCGCCAGCAGGGGGCGCCCTGGCACAGCACCGTGAGCAAGCGGGTCCTGTAGTGCCCGGCTGCAAGCAAGGGGCGGTCGATCCCGGCTTTTCGGATTACTGAGGTTCTACCCGT...
chr1	11,505	11,675	139	39	0	chr1:11505-11675	L1MC5a_dup3	chr1	11,505	11,675	null	L1MC5a	L1	LINE	5,823	TCACCTGTTAGACTGGCAAAAATCCAAAAGTAAACACTTTGTGGAGAAACAGGCATTCCTAGACATTGCTGGTGGGATACAGAACAGTACAATTCTGATGGTAATCAGTTCACAAATTAAACATATTTATTTTTTACTTTTAAACCCAGGAATCCCATATTTAGGAGTCTA
chr1	15,265	15,355	60	9	0	chr1:15265-15355	MIR3_dup11	chr1	15,265	15,355	null	MIR3	MIR	SINE	7,618	TGAGCTTGTACCCAGCGCTGCTTTTGCCTTGCTCTGTGACCCCAGGCAAGCTGCCTCACCTCTCTGGGCCAGTTTCCCCATTGTACAGTGG
chr1	20,531	20,679	84	17	0	chr1:20531-20679	Plat_L3	chr1	20,531	20,679	+	Plat_L3	CR1	LINE	10,191	CAAGATGAAATTTACAAGGAACAAATGTGAAGCCCAACATTTAGGTTTTAAAAATCAAGCGTATAAATACAGAAGGTGGAGGGAACTTGCTTTAGACACAGTTCAGGTGAAGAAAGACCTGGAAACTTCTGTTAACTATAAGCTCAGTA
chr1	21,949	22,075	118	34	0	chr1:21949-22075	MLT1K_dup2	chr1	21,949	22,075	+	MLT1K	ERVL-MaLR	LTR	10,885	GTGGTTTTCCTCTTCAGCAACTATTTCCTTTTTACTCAAGCAATGGCCCCATTTCCCTTGGGGAATCCATCTCTCTCGCAGGCTTAGTCCCAGAGCTTCAGGTGGGGCTGCCCACAGAGCTCCTCAG
chr1	23,120	23,371	189	17	1	chr1:23120-23371	MIR_dup22	chr1	23,120	23,371	null	MIR	MIR	SINE	11,470	AGGGGACACACAGTGAAGTGACTGAGGGGTTACCTTGGAGTTGATGCCTTGGCTCAGATCCAGCTCCCCTGTTTTCTTCCTCTGTAACCTTGGGCAACCCAACCCCTCTAAGCCTCGGTGTTCTCATTTGTGAAGTTGTGGTAATAATGGTAGCTTCCTGGTAGAATTATTTTAAATATTAAATTAATCAAAACATGCAAAGGAATGGAACAGTGCCTGGCACCTAGGAAGCCTTCAGGAAATGCTATCTCT
chr1	24,295	24,448	177	13	1	chr1:24295-24448	L2b_dup16	chr1	24,295	24,448	+	L2b	L2	LINE	12,008	TAATCATCTATTGCTTATTTAGGTCTTTCTCTCCTGCCAGAATGTGCGCTCCAGGTGGAGAGGTATGTTGCCTTATCCGTGGCTGGATATATAGAGATTCCCACACTGCCTTGCACACGAGCACTGCTGGGTAAATATTTGTTGGCTGCAGGAA
chr1	26,583	26,790	172	12	1	chr1:26583-26790	L2c_dup23	chr1	26,583	26,790	null	L2c	L2	LINE	13,125	GAGAGGCACACATTCTGCTAAGAGCTTTTTCCTGACTCCCCTAACTCCAAGAGGGATTTGTCACTCCTTAGCTTTGTACCCATGACTGGAGTAGAATGAATTTAATTTGAGTTTAGTTGTTTTTGAGACTCTCCCTGGCTAGTGTAGTGTCTTATTCGTCTTTGTTGTGATCATGGCCTGCACCTAACAGATGATCAGTAGATGTTTG
chr1	26,791	27,053	30	210	3	chr1:26791-27053	AluSp_dup11	chr1	26,791	27,053	+	AluSp	Alu	SINE	13,218	GGCCGGGCGCAGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCGAAGGCAGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGTCTGACCAACATGGTGAAACTCCATCTCTACTAAAAATACAAAATTAGCCAGGCGTGGTGGTGCATGCCTGTAATCCCCGCTACTCGGGAGGCTGAGGAAGGAGAATCACTTGAACCAGGAAGGTGGAGGTTGCAGTGTGCCAAGATCGCGCCATGGCACTCCAGCCTAGGCAAC
chr1	27,054	27,137	30	13	2	chr1:27054-27137	L2c_dup24	chr1	27,054	27,137	null	L2c	L2	LINE	13,365	TTCCCCTACACACTTTTTGTTCAAGCTGTTTCTTTTACCTGGAATGCTGTCTTTGCACCTTCTTCCTGGACCTGGTTCACCCTC
chr1	27,269	27,518	98	11	0	chr1:27269-27518	MER33	chr1	27,269	27,518	+	MER33	hAT-Charlie	DNA	13,463	GAAATCCTTAGACCTGTGCTGTCCAATATGGTAGCCACCAGGCACATGCAGCCACTGAGCACTTGAAATGTGGATAGTCTGAATTGAGATGTGCCATAAGTGTAAAATATGCACCAAATTTCAAAGGCTAGAAAAAAAGAATGTAAAATATCTTATTATTTTATATTGATTACGTGCTAAAATAACCATATTTGGGATATACTGGATTTTAAAAATATATCACTAATTTCATCTGTTTCTTTTTACTTTT
chr1	27,833	28,014	63	28	0	chr1:27833-28014	MIRb_dup27	chr1	27,833	28,014	null	MIRb	MIR	SINE	13,753	ACAACAAAACATATCAATAAATAACAAAAAGCTTGGAATTCAGACGACAGATCCAAGTCTGGGCTTGATCTCAAGCTAGTGTTTTGATGTTGAAAAAATGTTATTTGGTCTTTCTAACCCCATTTCCTTATGTAAAATAGGGGATGATGATAAATTCACTGATAATAAGAGTTAAATGAGAT
chr1	28,151	28,302	186	32	0	chr1:28151-28302	MIR_dup24	chr1	28,151	28,302	null	MIR	MIR	SINE	13,928	GCTAATCAACCCCTTTGTGCCTGGGTTTTCTTATTTGTAAAAATAGATACTACTACCTAACTCCAAAGTGTGTGGTGAAGACAAACAATTGGGGTGATGTATACTAAAGTAACGAAAGTGTTGACCACACACTACGGGCTGGTTAGTGTTAG
chr1	30,953	31,131	37	68	2	chr1:30953-31131	MLT1A_dup1	chr1	30,953	31,131	+	MLT1A	ERVL-MaLR	LTR	15,182	CTCCTCTGTCTTTTCCCACCAAGTGAGGATGCGAAGAGAAGGTGGCTGTCTGCAAACCAGGAAGAGAGCCCTCACCGGGAACCCGTCCAGCTGCCACCTTGAACTTGGACTTCCAAGCCTCCAGAACTGTGAGGGATAAATGTATGATTTTAAAGTCGCCCAGTGTGTGGTATTTTGTT
chr1	31,293	31,435	37	59	2	chr1:31293-31435	MIRc_dup11	chr1	31,293	31,435	+	MIRc	MIR	SINE	15,335	GGATCTGCTATTCATTCTTTGTGTGACCCTGGGCAAGCCATGAATGGAGCTTCAGTCACCCCATTTGTAATGGGATTTAATTGTGCTTGCCCTGCCTCCTTTTGAGGGCTGTAGAGAAAAGATGTCAAAGTATTTTGTAATCT
chr1	31,734	31,754	28	212	3	chr1:31734-31754	MIRc_dup12	chr1	31,734	31,754	+	MIRc	MIR	SINE	15,539	GTACTTTGTAATCTGTAAGGT
chr1	32,841	33,037	62	173	0	chr1:32841-33037	MIR_dup25	chr1	32,841	33,037	+	MIR	MIR	SINE	16,077	CAGGAGAGCATAGTGGTTACTAGGAAGGGAAGGACTTTGGGACTAGACTGCCTCGGCTGGAGTCCTCTTTCTGCTTCATAGCCACGTGATCCTAGGCATGTTACCTGTGCCTCAGTTTTCACTCTGTCAATATGTAATAACTGAATCTGTCTTTGTGGTGAGGATTCAGTGAGTTAACATATTTGAAGTGCTTAAAA
chr1	33,048	33,456	40	74	2	chr1:33048-33456	L1MB5_dup4	chr1	33,048	33,456	+	L1MB5	L1	LINE	16,153	TGTCCATAGATTAATGAGTGAATACACAAATGGTGATATGGACATACAGTGGAGTATTAGTCATAAAAAGGAAGGCAGAGCTGATCCATGGCACCATGTGACAGAACCTCAAAAGCATTAGGTTAAGTGGAAGAAGCCAGACACAGGTCACCTATTGTGTAATTCCATTTATAGGAAATATACAGAATATGTAAATCCGTGGAGAAAGAAAGCCGATTTCCAGGGGCTAAGGGGAGGGGAGAATGGGAAGTGGCTGCTTCATGGGTACAAGGTTTCATTTTGAGCTGATGAAAATGTTTTGGAACTACATAGAGATAGTG...
chr1	33,466	33,509	20	83	2	chr1:33466-33509	Alu	chr1	33,466	33,509	+	Alu	Alu	SINE	16,320	GACCAGATGTGGTTGCTCACACCCATAATCCCAACACTTTGGAA
chr1	33,529	34,041	17	220	3	chr1:33529-34041	L1PA6_dup3	chr1	33,529	34,041	null	L1PA6	L1	LINE	16,350	GGGTATATACCCAAAGGATTATAAATCGTGCTACTATAAAGACACATGCACATGTATGTTTATTGTGGCAGTATTCACAATAGCAAAGACTTTGAACCAACCCAAATGTCCATCAATGACAGACTGGATTAAGAGAATGTGGCACATATATACCATGGGATACTATGCAGCCATTAAAAAGGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTGAGCAAACTATCACAAAGACAGAAAACCAAACACTGCATGTTCTCACTCACAGGTGGGAATTGAACAATGAGAACGCTTGGACATG...
chr1	34,048	34,108	14	226	3	chr1:34048-34108	L1P1_dup2	chr1	34,048	34,108	+	L1P1	L1	LINE	16,554	CTGGGACGCATTTAAAGCAGTGTGTAAAGAGACATTTATAGCACTAAATGCCCACAAGAGA
chr1	35,217	35,366	169	30	0	chr1:35217-35366	MIRb_dup28	chr1	35,217	35,366	null	MIRb	MIR	SINE	17,074	GACCTTGGGCAAGTTCTTAAACCCTTCAAAGCCTCATTTTTCTCCAATCACAAAAGGGAAAGATGGTAATATTTTCCCCACCAAATTCTTGTAAGTATTAAACATTGTATATGTATTTTGAACACGATTAAGCTCTAAACACTTGTTAGG
chr1	35,367	35,499	29	211	3	chr1:35367-35499	AluJr_dup15	chr1	35,367	35,499	+	AluJr	Alu	SINE	17,142	GGCCAGGTGCAGTGGCTCATGTCTATAATCCCAACACTTTGGGAGGCTGAGGTGGGAGGATCGCTTGAGGCCAGGAGTTCAAGACCAGCCTGAGCAACATAGTGAGACTTTGTCTCTATAAAAAATAAATAAA
chr1	37,045	37,431	112	26	0	chr1:37045-37431	Charlie5	chr1	37,045	37,431	+	Charlie5	hAT-Charlie	DNA	17,962	TGATACTCCACCCAGTTACCAGAAAACATTTAGGTATGTGTGAGACAACTTGGGTATGTGAACCTACCTTTTCAATGTAAATTCAGTGAAATCTAAGTGCAGATCCCATATTTCCAATAAAAAGGTAACATCCAAACTCAGATGTCCTATGAGTATAAAATACACAAAGATCTTCTGGACTTAGTATGAAAAGGGATTTTTTTTTTGTCAGGTACCTCACTAGTTATTTTTAAAATAGGATTGCATGTTGAAATGATAATCTTTTGGATATATTGGGTTAAATAAATTTATTATTAAAGTTAATTTCACTTAAAAATGTT...
chr1	37,733	37,861	70	89	0	chr1:37733-37861	L2c_dup26	chr1	37,733	37,861	+	L2c	L2	LINE	18,310	TATCACCACCACTGGGCACAAGCTTCTCCAGCACAGCAACTGTGTCTTATTTCTCCTTGTACTCCCAGTGTTCACACCATGCTGCACTCACAGAAGACTCTTCGTTGATATTTTGTGGACAGAGAGAAT
chr1	38,059	38,191	105	111	0	chr1:38059-38191	L2a_dup30	chr1	38,059	38,191	+	L2a	L2	LINE	18,458	CTTCCACGTGGGTTTGACAGGAGCCTCCTAACTGCTCTTCTGCTTCCATTTTTGCCCCTTCAGTCTATTCTCAACAGGGAAGCCAGAGGCATCCTTAACCATGTCAGATCATGTGGCTCCTCAGCTCAAAGCC
chr1	38,256	39,464	26	93	2	chr1:38256-39464	MLT1E1A-int	chr1	38,256	39,464	+	MLT1E1A-int	ERVL-MaLR	LTR	18,542	TGAGCAGACTGTTGCTAGATATCTGGGCTCGGAGGACTCGCCACTGCTCAAAGGCAGTGAGGATTTTCGCACTAGAAGCTGGAGGACAGGGATCCTTGTTAGGTAGGAGCAGAAAGCTTAGAAAAGTGGTCTCCTGCAGTTACGTGGCAAACACATCATGTAAGTGATAAATTGGGTATGCAGTTGAGGAGATTTCCAAGTAAAATGTTGAGGATGCTGCCTGGTTTCTTCTTACTGCTTATAATATAGTGTGAGAGAAGAGAGATAAATTGAGAAAGAGACTGGTTTTTAAACTGTTAAAATTGAATCAGGACTTGATG...
chr1	39,925	40,294	134	78	0	chr1:39925-40294	MLT1E1A_dup2	chr1	39,925	40,294	+	MLT1E1A	ERVL-MaLR	LTR	19,312	TGTTAAGATCATAACCTGTCTTTCTGGGGACTCTCTCTTGACGCCTTTGAAGAAGCAGGCTGCCATGTTGCAAGCTGCCTCATGGAGGGGATCAGCTGCGAGGAGCTAAGAGCCCCCTCCAGTCGATGCTCACCAGGAAGCTGAGGTCTTGTGTCCAGCACCCTGCATAGAACTGAATGCTGCCATGTGAGCTTGGAAGCAGAGCCATCCACACAGCTGAGCCCTAGATGAGAACCCAGTGCTGGCTGACACCCTGATGGCACCTTACAGAGGACCAGTTAGGCTGTGCCAACTCCTGACCTGCAGAAGCTGGGGAACAC...
chr1	40,308	40,626	103	68	0	chr1:40308-40626	L2a_dup31	chr1	40,308	40,626	+	L2a	L2	LINE	19,504	GCCTGTGACGCCCCAACAATCCACACCTCCTGCATCTCCCTGCCTTCACTTCCTAGCACACTGCCCTGACTCCCTCTGCCGCAGCCACGCTGGCCCTCTGCTGTTCTTCGAAGCCACCAGGGCTGCATTGGCTCCCAGCCTTTGCTCTCACTGCTTTCTCCTCCTAGAGAGCCCTTCCTGCATGTATATGTTTGACTCACTCCCTTGCCTCCTTCAGACTTGTACTTAAAAATCTCAGTAAGCATTTCCCTGGCTACCCTTTTAAAAATTGCAACCCACTTCCATCCCCATCCCCAACATGCCATATTTCCTTTCTTCT
chr1	40,629	40,729	27	212	3	chr1:40629-40729	AluSz6_dup9	chr1	40,629	40,729	null	AluSz6	Alu	SINE	19,653	GGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGTCACTGCACTCCAGGCTGGGTGACAGAGAACCTGTGTCAAAAAAAAAAAAAAAAAAAGGAAGAAGGAA
chr1	40,736	40,878	37	78	2	chr1:40736-40878	LTR16C	chr1	40,736	40,878	null	LTR16C	ERVL	LTR	19,694	CAGCTTCTTTGTTTCTTAAGTGGGACAACTACAAGTCATAGAATTTATACAGTCTCTTGATGGCCACAGCAAGAATGTGCCCTTGATGTCCACTGTAGTAAATACAAATCAATGCATCCTTTATTGGCATCCTCCCCTTTTCT
chr1	42,370	42,504	99	136	0	chr1:42370-42504	MamRep1527	chr1	42,370	42,504	+	MamRep1527	LTR	LTR	20,379	CTTCCTGTTTTCTTCTGGCTATTGGATCAATTACATCCCATCTTAAGCTGACCCCTGTGTAATTAATCAATATCCGTTTTAAGCAGCAATCCATAGTTGTGCAGAAATTAGAAAACTGACCCACACAGAAAAACT
chr1	43,243	44,835	18	201	3	chr1:43243-44835	L1MA8_dup1	chr1	43,243	44,835	+	L1MA8	L1	LINE	20,743	AATGTAAATGACAAAACTACATACTCAACAAGATAACAGCAAACCAGCTTCGACAGCACGTTAAAGGGGTCATACAACATAATCGAGTAGAATTTATCTCTGAGATGCAAGAATGGTTCAAAATATGGAAACCAATAAATGTGATATGCCACACTAACAGAATAAAAAATAAAAATCATATTATCATCTCAATAGATGCAGAAAAAGCATTAACAAAAGTAAACATTCTTTCATAATAAGACATCAGATAAAACAAATTAGGAATAGAAGGAATGTACCGCAACACAATAAAGGCCATATATAACAAGCCCACAGCTAAC...
chr1	44,877	45,753	20	211	3	chr1:44877-45753	L1MA8_dup2	chr1	44,877	45,753	+	L1MA8	L1	LINE	21,435	TATTTAAAAATCGGCAGAGGACAGGAATAGACATTTCTCAGGAGACAACATACAAAGGGCCACAGATACATCAAAAAATGCTCAACATCACTATTTGTCAGGGAAGTACTAATTAAAACCAAAATGAGATGTCCCCTCAAACCTGTTAGAATGGCTATTATCAAAAAGATGAAAGATAGCAACTATCAGAGAGGATGATAGAAAAGGGAACCCTTGCATCATGTACAAATTAAAAATAGAACTATCACATGATCCAAGAATCCTACTTCTGGGTATATAGCCAAAGGAATTGAAATCAATATGTCAAAGGGATATCTGCA...
chr1	45,887	45,987	21	217	3	chr1:45887-45987	L1M5_dup1	chr1	45,887	45,987	+	L1M5	L1	LINE	21,845	CATATAAAGACTATGGACAAAACAAGAAATCCAAATAAAAAATAAACATATGAAGAATATTCAAACTCACTTTTTATCAAAGAAATGTAAATTTTAAAATA
chr1	46,079	46,198	20	218	3	chr1:46079-46198	L1MA9_dup7	chr1	46,079	46,198	+	L1MA9	L1	LINE	21,946	GATAATTATGTCAGATCATGAATTACGTTAATTAGCTTGATGGTGGTCACTGTTTCACGATAAATATACATATGTATCAAAACATCACATTACACACCATAAAGATATATAACTTGTTAT
chr1	46,416	46,493	19	215	3	chr1:46416-46493	LTR12F	chr1	46,416	46,493	null	LTR12F	ERV1	LTR	22,097	GGCAAACCGCTCGGGTCCCCTTCCACACTGTGGAAGCTTTGTTCTTTCACTCTTCACAATAAATCTTGCTGCTGCTCA
chr1	46,553	46,722	20	180	3	chr1:46553-46722	MER45A	chr1	46,553	46,722	+	MER45A	hAT-Tip100	DNA	22,157	CAGCTTCACAAGTGTGTGTCCTGTGCAGTTGAACAAGATCCCACACTTAAAAGGATCCTACACTTTTTTTAATGCTCTGCTGTTTCTGCCTTGAAATTCTTAACAATTTTTTTAACCAAAGTCCTCACAAATTCAGTTTACATTAGCCCTGCAATCATGTAGACATCCTG
chr1	48,417	49,518	13	225	3	chr1:48417-49518	L1PA14_dup2	chr1	48,417	49,518	+	L1PA14	L1	LINE	22,963	AACTTAGGCAACACCATCCTGGACATAGGAACGGGCAAAGATTTCATGACAAAGACACGGAAACCAATCACAACAAAAGCAAAAATTGAGAAGTGGAATCTAATAAAACAATAGCTTCTGCACAGCAAAAGAAGCTACCAACAAAGTAAACAGACAACCTACAGAATGGGAGAAAATATTTGCCAACTGTAAGTCTGACAAAAATCTAATATCTGGCAGCTATAAGGAACTTAAATTTACAAGACAAAAACAACCCCATTAAAAAGTGGGCAAAGAACATGAATAGACACTCTCAAAAGAAGATATACATATGGTTAACA...
chr1	51,585	51,880	113	125	0	chr1:51585-51880	AluYj4	chr1	51,585	51,880	+	AluYj4	Alu	SINE	24,281	GGCCGGGCGCGGGGGCTCGCGCCTGTCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGGGAAACCCCGTCTCCACTAAAAATACAAAAAGTTAGCCGGGCGCGGTGGCGGGCGCCTGCGGTCCCAGCTGCTGGGGAGGCCGAGGCGGGAGCATGGCGGGAACCGGGAGGCGGAGCCTGCAGTGAGCCGAGATGGCGCCACCGCACTCCAGCCTGGGCGACCCAGCGAGACTCCGCCTCAAAAAAAAAAAAAGAA
chr1	54,465	54,703	108	105	0	chr1:54465-54703	L2_dup13	chr1	54,465	54,703	+	L2	L2	LINE	25,666	CTCCCCCATCTTCAAATACTCTACCGGGCTTCTGGAACACCACAGCTTCCTGGCTTTTTCTCCTACCTCCTGGGCAAGTCCTTCCCTGTGTCTTTTGTTGAGTGTTCCTCATCTGCTTAACTACCAATCAACCTATTGCCCCTAATTTGATCTTTGGCCTGTTTTCACTTAGATTCTATCCCTACGTATCACCCATTCCCACAGCTTTAATCACCATCTAAACACTAGGGGCTCTCAAA
chr1	54,819	54,938	27	136	0	chr1:54819-54938	FLAM_A	chr1	54,819	54,938	null	FLAM_A	Alu	SINE	25,849	GGTCAGGTGCAATGGCTTGTCCCTGTATTCTCAGCTACTTGGGAGGCTGAAGCAGACAGATTGCTTGAGGTCAGGAGTTTGAGACCAGCCTCAGCAACATAGTGAGACCCTGCCCCTTAA
chr1	54,945	55,608	40	85	2	chr1:54945-55608	L2_dup14	chr1	54,945	55,608	+	L2	L2	LINE	25,896	CTATTTCTTGAGTTCCTGATCCACAGATCTAACCTCCTACTTTCCTGGATGCCACACAAGATCTTCCACTCAACAAGTCTGCAACTAAACTAGCCTTCCTCTTTTCAAACCTACTCTTCTTTCAGTGTTCTCAGTCACAATAATTTGTACCAACTAGTTACCTAGTTGCACAACCCAAAATCTGGGAAAAATAATAGATTTCTTTCTCCATAGTACCCCCAAATCAATAAATCATCAAGTCTTATTCTACCTTCCAAAGAGCCTTACATATGTTCCTTTATTTTCATCTGTAACACCACTATTCCTGTCTAAGCCTACCT...
chr1	59,056	59,208	70	53	0	chr1:59056-59208	L2a_dup32	chr1	59,056	59,208	null	L2a	L2	LINE	27,713	TATTTTACTTATTCTAATATTTGTAGCTTTTCATAAATGTAAAATTAAAGTCCATGAGTGCAGGGAAACTTTTTGCATTGTTCAGTGCATAATTACTTGCCTAAAACAGTGCCTGTCTCATAGAAAAAGCTCAAGAAATACTTGATGAATGAA
chr1	60,379	60,686	39	201	3	chr1:60379-60686	MER47A_dup1	chr1	60,379	60,686	null	MER47A	TcMar-Tigger	DNA	28,293	GATGGTCCCTGGCTTGTGATAGTTTGACTTATAATTGTTTGACTTTACAATGGTGAGAAAGTGACATGCATTCAGAAGAAACTGTACTTGAGTATAGTAGTCAGTATATTACGTGAGCTATTCAATATTTTATTATAAAATAGGCTTTGTATTAGGTGATCTTATATAAGCTAATGAAAGTGTTCTGAGCACATTTAAGGTAGGCTAGGCCAAACTATGATGTGAGGTACATTAGGAATATTAAATGCATTTTTGACTTATGATGGATTTATCAGGACGTAACCCTATTATAAGTCAGAGAGCATCTG
chr1	61,604	61,862	154	68	0	chr1:61604-61862	L1ME4c_dup1	chr1	61,604	61,862	null	L1ME4c	L1	LINE	28,848	GTTTTACAATTATTATTACCCAAACTGGCTAAGGATCAGAGAAATTGGCACTTTTATACGCTGCTGGAGGGAATATAGACTGATTCAAACCTTAAAGAAAATATTTTGAAATCATGTATCAAGAATTTTAAGTCCATGCCTTTTGGTGCAATAATACTCTTGGAATTCTATTTTTACAGAAGTTTTCAGCATAAAAATATTCATCATACTTTGTTGACAGTGATAAAATCTTGAAACGATTTAAATACCAAACATTAGG
chr1	61,863	62,160	18	85	0	chr1:61863-62160	AluSc_dup11	chr1	61,863	62,160	null	AluSc	Alu	SINE	28,960	GGCCGGGCATGGTTGTTCACGCCTGTTATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACGAGGTCAAGAGATCGAGACCATCCTGTCCAACATGGGGAAACTCCATCTCTACTAAAAATAACAAAAATTAGCTGGGCATGGTGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCTTGACCCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCAGCCTGGCGACAGAGGGAGACTCTGTCTCAAAAAAAAAGAAAAAAAA
chr1	65,977	66,134	155	59	0	chr1:65977-66134	MIR3_dup12	chr1	65,977	66,134	null	MIR3	MIR	SINE	30,816	TCAGTGAGATGGGAGTAGGCATTTGGGTTCTGGCACAAATTCACAGTGTGATCATGGGAATATCATTTAAAAATCTCTGGGCCTTAGCTTTCCTGTTTTTAAAATGAGTTTATTCTTTCAAAAGCTGTAAAAATCCTCACAACTCTAGCAGTATGATT
chr1	70,504	70,712	123	74	0	chr1:70504-70712	LTR89_dup1	chr1	70,504	70,712	null	LTR89	ERVL	LTR	32,797	CATGGAAAATGACATAGATGGATCCAAGTAATATACTTTGTGCCAACGTGATGAGAGCCTGGATCCCTCTAAATTCTTTCTACTGCTTATGAGCAGTTATACCACAGACGTCTAGGACCTAGAAGGCACATTTCACATTGGCAAACTTACTCTTCCACTCACTCCTGATAATGCCCTCATGGATTCTGGGTTGTTATAGTGGTGGGAGG
chr1	70,723	70,955	91	93	0	chr1:70723-70955	MIRb_dup30	chr1	70,723	70,955	+	MIRb	MIR	SINE	32,881	AAAAGCACAGGCTTTAAAGTAAAAAACAAAGAGCTGGATTCAACTCTACTGACTCTTATTAATCATGATTTTGGGCACATTACGTAGCTTTCATGAGCTTTAGTTTCTACATTTATAAACAGGAGATTATACCTATTATGCATGGTTATTATGAAGGAAAATGACAAAATAGATATAAATCAAATAGCCCACTTCGAGACATATTAAGCATGAATAAACATTAGATACTATTA
chr1	71,369	71,645	53	102	0	chr1:71369-71645	L1M5_dup2	chr1	71,369	71,645	+	L1M5	L1	LINE	33,155	AGAATAGAAAATTTATAAGCAGATTAAAAACACATAATAAAAGTAGTAAATAATAATGACAGTATCTCAAATCAGTGCAGGGGGGAAAGGCCTACTAATGTGATGGTGGGATAATTGGATAGCAATATGGGAAAAGATATATTTAATTTATTTGCTACACCAAATGCCAGGACAATCTCTAAGTGAATTCAAGACATAACTCTTTTTTCAAAAAAACTATGCAAATATTAAAAGAAAACAAGTTAATGTTTTTATAATCTATGAATATGGTAAAGAT
chr1	72,185	72,525	230	10	1	chr1:72185-72525	L1PA7_dup5	chr1	72,185	72,525	null	L1PA7	L1	LINE	33,506	TGCAGCCATAAAAAAGAATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCCGCAAACTAACACAAGAACAGAAAACCAAACACCGCATGTTCTCACTCATAAATGGGAGTTGACCAATGAGAACATATGGGCACAGGGAAGGGAATATCACACACCAGGGCCTGTCGGGAGGTGGGAGGCAAGGAGAGGGATAACGTTAGGAGAAATACCTAATGTAGATGGTGAGTTGATGGGTGCAGCAAACAACCATGGCAGGTGTATACCTGTGTAACAAACCTGTACATTCTGCACATGTATCCC...
chr1	72,526	72,897	230	10	1	chr1:72526-72897	L1PA7_dup6	chr1	72,526	72,897	+	L1PA7	L1	LINE	33,644	AGAAATGCAAATCAAAACCACAATGAGATGCCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAATAGATGCTGGAGAGGATGTGGAGAAATAGGAATGCTTTTACACTGTTGGTGGGAGCGTACATTAGTTCAACCATTGTGGAAGACAGTGTGGTGTTTCCTCAAGGATCTAAAACTAGAAATACCATTTGACCCAGCAATCCCATTACTGGGTATATACCCAAACGATTGTAAGTCATTCTACTACAAAGACACATGCACAGGTATGTTTATTGCAGCACTATTCACAATAGGGAAGACTTGGA...
chr1	73,688	73,843	20	17	2	chr1:73688-73843	L1M5_dup4	chr1	73,688	73,843	+	L1M5	L1	LINE	34,153	TTAAATATATGAAAAAAATGTTCAAGTCTCTCAGATTAAGATGCATGCAAAGTAAAATGATACTTAAATATCAGTTCTAACCTATAAAATATCAAATATCTGACCTCAATATTTGATAATCCAACCTGTTGATGAAGCTGTAGAGAGAGGCACCCT
chr1	74,898	76,697	2	214	3	chr1:74898-76697	L1PA2_dup7	chr1	74,898	76,697	+	L1PA2	L1	LINE	34,669	CCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTGGACACATACACTCTCCCAAGCCTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGAAGCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAGTCCTCCCTAAC...
chr1	76,693	76,892	25	214	3	chr1:76693-76892	L1MC5a_dup4	chr1	76,693	76,892	+	L1MC5a	L1	LINE	35,388	GAGAGAGGCACTCTTATGCATTGTTGGTGAGAATACAAAATGGTACAACTCTTGGCAATATCTTAAAAAATTTACATGGTACTGACTTTTGGTCTAGCAATCCTACTTCTATCCTAAAGATATATTGGCAAAAATACAAAATAATTGATGCACTCAAGTCTATTCATTGAAGCATTGTTTTTCATAGTAAACGGAAAGTA
chr1	76,893	77,201	18	214	3	chr1:76893-77201	AluSz_dup24	chr1	76,893	77,201	+	AluSz	Alu	SINE	35,487	GGCCGGGCGTGGTGGCTCATGCCTGTGATCCCAGCATTTTGGGAGGCTGAGGCGGGCAGATCACTTGAGGCCAGGAATTCAAGACCAGCGTGGCTAACATGGCGAAACCCCATCTCTACCAAAAATACAAAAATTAGCTGGGCGTGGTGGTGCACACTTGTAATTCCAGCTACTTGAGAGGCTGAGGTGGGAGGATCGCTTGAACCTGGGAGGCAGAAGTTTCAGTGAGCCCAGAACGTGCCTCTGCACTCCAGCCAGGATGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGGAAAA
chr1	77,202	77,638	18	221	3	chr1:77202-77638	L1MC5a_dup5	chr1	77,202	77,638	+	L1MC5a	L1	LINE	35,605	TAACCAAATGACAATTAGTGAGTACTACTTGCAAAACTTGTACGCAATAGAGTATGAAGCAACTATAAAATGAGAGAGAAATATCTCCAAATACTACTCTAAAGTAATCTACAAGGTATACCTTAACTGAAAAGAAACAAAAAAGTGACACCAGAATGCTATTTTTATGTTAAAACAGGGATAAATACATTGGATTTACATGCATATATAAGTATATATTTTATAAATGTTTAAATAAGCATACTTAAAATGGCAAAAACGTAATACATATATAATTTTCTTATGGCAGGAGGAGGAAACAGGGCAAGGCACAGGGATAA...
chr1	77,717	78,235	19	218	3	chr1:77717-78235	L1MC5a_dup6	chr1	77,717	78,235	+	L1MC5a	L1	LINE	35,817	TTTGGAACCCAATGAATTAATGGGCCTAAGATAACAACCAATAGAAGCTAAAATGACGAATAACTGTTTCAGAAGAAAACATATATGGAATGAATCAGCTGAAAATACCTGAACCTACTGATCAATTTTTATATCACATGAAGTGAATACACATAAAGTATAATATGGAGCACATAGAACCAACTAGAAATGAGCCTAATTGTTAAATATTCTCTATTTTATGACAATATACAGGAAATATGTCGAAGAGAGAAACATGCAAGAACACCGTAGGGTTTAATAAGATAATCACAAGGTATGGAATATTCAACAGGATGAGT...
chr1	78,232	78,283	22	218	3	chr1:78232-78283	L1M2_dup1	chr1	78,232	78,283	+	L1M2	L1	LINE	36,037	TCAAATATAGACAATAATAACCTTGAATGTACATGGATTAAATGTCCACTTA
chr1	78,286	78,421	19	218	3	chr1:78286-78421	AluJr_dup16	chr1	78,286	78,421	+	AluJr	Alu	SINE	36,074	GGCTGGGTGTGGTGGCTCATGACTATAATTCCAGCACTTTGGGAGGCCAAGGCAGAAGGATTGCTTGAGGTCAGAGGTTCAAGTGCAGCCTGGTCAACACAGTGAAACCCTATCTCTACAAAAAACAAACAAAAAT
chr1	78,459	78,890	18	218	3	chr1:78459-78890	L1M2_dup2	chr1	78,459	78,890	+	L1M2	L1	LINE	36,120	TAAATTCTCCACCTGAAAGATATAGACTGACTGAATGAATTTTAACTATGATCTGACTATGTGCTTCCCTGAACAAATGCACTTTACCTGTAAAACACATATTAACTAAAAGAAAAGAGATGGAAAAAGGTATTCCATGAACAGAAACCAAAATGAGTAGGAGTAGCTATACTTCTGTCAGACAAAACAGACTTTAAGTCAAAACTAGCTTTAGAAAAAAGACAAAAATGCTTATTATACAACGATAAAGGAATCAATCCAGAAAGAGGATATAACAATTTTAAATATATATGCAGCCAACACTGGAGCAGCCAGATTCA...
chr1	78,891	79,850	19	221	3	chr1:78891-79850	L1PREC2_dup5	chr1	78,891	79,850	+	L1PREC2	L1	LINE	36,306	TCTCGCAGCCCTCACCCTGGAGAGTCCACAGGTACCAGGGGTTGGTCTGAACCCCCAGCACAGAGCACCTGCCTCACAGAAGAGTGGCTGCATTTTTCTTCCTGCAGTTTTCAGTCCTCACTTCTCCTTACCAAGCAGGGCCACCTGGCCTGGGACTCCGGTACAACTACCCTGCCCCCCACCTGACGACTTCAATAAGAAGTAGCCCAGCATTTCTCCAAGGAGGAAATACCAGAGTCAATTCACAACCACTGCAATTGCAGTGGTACCACCATAACAGCCCTTGGGCTGCAGAAGGAACTAAGAGTCTAGTCACTACA...
chr1	79,830	80,634	16	216	3	chr1:79830-80634	L1PB	chr1	79,830	80,634	+	L1PB	L1	LINE	36,685	CACACCCCCTGCTGTTCACCATGGATGATAGAGTCAACAGTGTGAAAACGACCATACTGCCAAAAGCAACCTACAAATTCAATGCAATTCCCATCAAAATACCACCATCATTCTTCACAGAACTAGAAAAAACAAGGCTAAAATTCACATGGAACCAAAAAAGAGCCCACATAGCCAAAGCAAGACTAAGCAAAAAGAATAAATCTAGAGGCATCACATTACTCGACTTCAAACTATACTATAAGGCCATAGTCACCAAAACAGCATGGTACTGGTATAAAAATAGGCATATAGACCAATGGAATAGAATAAAGAACCCA...
chr1	80,712	80,804	24	216	3	chr1:80712-80804	Tigger5b	chr1	80,712	80,804	+	Tigger5b	TcMar-Tigger	DNA	37,032	CAAACTGTTTCCAAGTTACAATGGTTCAACCATTTTTCAGCTTTATGGTGGTGTGAAAGTGATATCCATTCATTAGAAACCATGCTCCAGGAT
chr1	80,805	81,096	14	216	3	chr1:80805-81096	AluSc5	chr1	80,805	81,096	+	AluSc5	Alu	SINE	37,059	GGGCGCAGTGGGTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGAGGGCGGATCACAAGGTCAAGAGATCAAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTCCTAAAAATACAAAAATTAGCTGGGCATTGTGGTGCGTGCCTGTAATCCCAGCTATTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCAGGGAGTCGGAGGTGTTGCAGTGAGCCGAGATCGTGCCACTGCCTCCAGCCTGGCAACAGAGTGAGACTCCATCTCAAAAAAAAGAAAGAAA
chr1	81,097	81,231	24	216	3	chr1:81097-81231	Tigger5b_dup1	chr1	81,097	81,231	+	Tigger5b	TcMar-Tigger	DNA	37,167	CCCTACTCCGAATTTTGAATTTTGATATTTTCCTGGACTACCAATATGTGGCACAATGCTCTCTCACAATGTTGTGCAACAGCGGTGAGCTGCAGCTTCCAGTCAGCTAAATGATAATAAAGGTAGATAATCCAT
chr1	81,694	82,270	25	213	3	chr1:81694-82270	L1M5_dup5	chr1	81,694	82,270	+	L1M5	L1	LINE	37,402	TATGGGATATAGTTAAAGCAGTGATCAGAGGAAAATCTATAGCCTTAACACATTTATTAATAAAAGTGTAGGAATTAAATTATCAGCTGAAAAATGTAAAAAGTATCTAAAAGAGTAAGCAGAAAGTACAAGAAAGAACCCAAAGTAGAAAAAAGTGAAAATTAATAAAATAAGAAGCCAAAAAACAGATCAAATCAGTAAACCAAAAATCTTGTTCTTTAAACAAATCAACAAAGTTGACAAAAAAATTAGATCTTTTAATCATGAATAAAAAAAAGAGAAAGCACAAAAATGAATAAGGAATGGTGAGAGAAATAACT...
chr1	83,592	83,802	2	222	3	chr1:83592-83802	L1M4_dup4	chr1	83,592	83,802	+	L1M4	L1	LINE	38,100	GAAAAAGGCAACGCGTCATTTACAAAGGATCCTCAGTAAGTTTGACAGCAGAGAGCTCATTATAAACCATGGGTGCCAGAAGAGCTTAGGATGACATTTTAAAGTTCTGAAAGAAAAAAACACTGTCAACCAAAAATTCTATAACTTGGAAGATGCCCCTTCAAGTATTAAGGATAAATTACACATTCCCAGATTAAAAAAAAGAAAGAGA
chr1	85,700	85,986	17	222	3	chr1:85700-85986	L1M4_dup6	chr1	85,700	85,986	+	L1M4	L1	LINE	38,977	ACATCTCTATTCAGCTGACTTTTTTTACAAGGGAGCCAACATTATTCAGTGGGGAATAATAGCTTTTTCAACAAAAAGTGCTGGGAATACTGAATATTCATATGCAAAAAAAATGAAGCTGGACCCCTACCTCACATTATATACAAAATCTAGATTGGATCAATAATGTAAATATAAGAGTGAAAACCATACATGCTTAGAAGAAAACATGGAAATAAAACATTGCTGTGGATTGGCAATGCGTTCTTAGATAATACACCAAAAATACAAGCATGAAACAAACAAAT
chr1	86,030	86,619	37	201	3	chr1:86030-86619	L1MC5a_dup7	chr1	86,030	86,619	+	L1MC5a	L1	LINE	39,141	AAGAATTAGAGGGGAATTTGGTGAAAGAAATATGGGAGAATGGGACATTGCTCTGTGAATGCTTTTGTGCATAATTGTACATTTTTAATTAAGTTAATCTTTTACACTCTCAAAGTGTGATATTAAGCAAGCAAAGATAAGTTATTACAAGACTCTAAAACCGAATGCAATGAGAAACAAGTGAATCCAAATATATTTCAAATGAATGAATGACATAATCAAACTTAAGGGGAAAATAATAATTAATCTGATTAATTTTTGACTGTTCTTTTAGTTCAAATTGACTTTTGAACATACTTGGACTACATACCATTGCTTGA...
chr1	86,818	87,087	40	197	3	chr1:86818-87087	HAL1M8	chr1	86,818	87,087	+	HAL1M8	L1	LINE	39,518	CCTCCTGGTGAATGAACACACCATCACCTACAATCTTACCAAAAATAGAATCAAGCACGTGTCCTAGTCAAACCTCTGGATTCAACTGTCATTTGGATAAAACGCAAAGGATAGTGAAAATGTCGATCTTCACTGAGAGTCTAACCAGCAAATTTCACAGTGTGGACATCAAGTGACAAAAATCCCAAATTTTTCAACAAATATATTGTATGGGAAAGAAAACTTTGAAAAGAAACCTGTATGTTAGAAGAGATTTTAAAAACATGACAA
chr1	87,126	87,413	11	229	3	chr1:87126-87413	AluJo_dup15	chr1	87,126	87,413	null	AluJo	Alu	SINE	39,645	GGCCGGGTGTGGTGGCTCATGCCTGCAATCCCAGCACTTTCAGGGGCCGAGGCGGGAGGATCGCTTGTGCTTAGGAGTTTGAGACTAGCCTGGGCAACATAGCAAGTCCCCGTCTCTACTTAAAAAAGAAAAAAAAATGAGCCAGATGTGGTGGCACGCAGCTGTAGTCCCAGCTACATGGAAGACTGAGGTGGTAGGATCACTTGAGCCAGGAGGTTGAGGCCACAGTGAGCCATGGTCACACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAAA
chr1	88,925	89,135	19	219	3	chr1:88925-89135	L2a_dup33	chr1	88,925	89,135	+	L2a	L2	LINE	40,435	CCCCCATCTCCTCTGACCTCCCACCTCTCTCCCTCAGCTAGTCCTCGAACATGTCTGATGTGGTCCCACCTTGGGACCCACATTGCTACTCCTCTGCCTGTAGGGGTACCCACAGTTATCCACACAGTTCACTCCTGTCTTTCAGGTCTTTGTGCAAATATCACCTTCTCAGTGGAGACTACACCTTCAGGACTTAGGCTGTGCCTGGCAC
chr1	89,286	89,381	21	219	3	chr1:89286-89381	L1M5_dup6	chr1	89,286	89,381	null	L1M5	L1	LINE	40,590	AGCCAACAGCACATGAAAATGCGTGTAATCCATTTGTAAGCAGAGAAATGCAAACTAAAACAGTAAAGTGTCATTTTCACTTCCTGGATTGGCAAA
chr1	89,859	90,056	97	117	0	chr1:89859-90056	MLT1H2	chr1	89,859	90,056	+	MLT1H2	ERVL-MaLR	LTR	40,812	CTTTGCCTCCTCTCCCAGGAGGAGATAGCCTCCATCTTTCCACTCCTTAATCTGGGCTTGGCCAAGTGACTTACACTGGCCAATGGGATATTAACAAGTCTGATGTGCACAGAGGCTGTAGAATGTGCACTGGGGCTTGGTCTCTCTTGCTGCCCTGGAGACCAGCTGCCCCACGAAGGAAACAGAGCCAACCTGCTG
chr1	90,443	90,576	79	97	0	chr1:90443-90576	MLT1H2_dup1	chr1	90,443	90,576	+	MLT1H2	ERVL-MaLR	LTR	41,068	CCAACCCAGTTGACCGCAGACATGCAGGTCTGCTCAGGTAAGACCAGCACAGTCCCTGCCCTGTGAGCCAAACCAAATGGTCCAGCCACAGAATCGTGAGCAAATAAGTGATGCTTAAGTCACTAAGATTTGGG
chr1	90,921	91,213	41	199	3	chr1:90921-91213	AluY_dup24	chr1	90,921	91,213	+	AluY	Alu	SINE	41,277	GACCAGGTGCGGTGGCTCACATCTGTAATCCCAGCAATTTGGGAGGCCGAGGCGGGTGGATCACAAGGTCAGGAGATCAAGACGATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGTTTGGTGGCAGGTGCCTGTAGCCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATGGCGTGAACCTGGGAGGTGGAGCTGGCAGTGAGCCAAGATCACGCCACTGCACTCCAGACTGGGAGAGAGAGCGAGACTTTCTCAAAAAAAAAAAAA
chr1	91,609	91,677	29	155	0	chr1:91609-91677	MER4D1	chr1	91,609	91,677	null	MER4D1	ERV1	LTR	41,603	CAGGTTGTGGTCCTCACATTTGGCTCAAAATATTCAAATTTTTTCCAGAGTTTGGCCTTTTCTTCAGCA
chr1	91,678	92,110	29	211	3	chr1:91678-92110	MER4CL34	chr1	91,678	92,110	+	MER4CL34	ERV1	LTR	41,636	TGAGAACGGAAAATAAATCCTGGGACCCCAGACTCACTAAGCCAAAGGGAAAAGCCAAGCTGGGAACTGGCTTATGCAAACCTGCTTCCCATCTGGTTCCTAAATAAGATAGCTATTACACAAAGACAAAAAAGCTACATCCCTGCCTCTACCTCCATCGCATGCAAAATGTGTATTCAGTGAACGCTGACCAAAGACAGAAGAATGCAACCATTTGCCTCTGATTTACCCACACCCATTTTTTCCACTTCTTCCCCTTTCCCCAATACCCGCACTTTTCCCCTTTACTTACTGAGGTCCCCAGACAACCTTTGGGAAAA...
chr1	92,114	92,392	29	209	3	chr1:92114-92392	MER4D1_dup1	chr1	92,114	92,392	null	MER4D1	ERV1	LTR	41,844	GGTCTCCACAGTCTCTTATCTTAACCCAGACTCTCCTTTCTATTGATAGCAGGTCTGTAGATAATAATTCTTTCAACCAATTGACAATCAGAAAATCTTTGAATCTATCTATGACCTGTAAGCCCCATTACTTTGAATTTTCCTCCTTCCAGACCAAACCAATGCAGACCAAACCAATGCAGAACTCCTATGTGCTGATGGTGGTCTTACATTTCCCTAAGTTTCTGCCGACTAAACTGTGCACACGTTCTCAGGACCTCCTGAAGCTGCGTCACAGGC
chr1	92,553	92,783	149	52	0	chr1:92553-92783	MIR_dup26	chr1	92,553	92,783	+	MIR	MIR	SINE	42,036	GGTCTCAGAGCCAGGTTACCTTGTCTTAGGTCCAGTGGCACCCTGACTGGCTTGGTGTCCTTGAACAAGTTACCTAACCTCTCCAAACCTCAGTCCCTCAGTTGTAAAATTAAAAAAAAAAAAAAGAAGAAGAAGAGTACCTACTGTATAGCATTGATTTGAAGATTGAATGAGCTGGTATTATACAACGTTTAGAAGCAGTGCCTGACACGCAAAAGGCTCTCAACAAAT
chr1	92,860	92,903	105	118	0	chr1:92860-92903	MIR3_dup13	chr1	92,860	92,903	+	MIR3	MIR	SINE	42,166	AAAGAGATGGACAAATGATCTCTAAAGTCTCTCTGGCACTAACA
chr1	93,159	93,421	217	21	1	chr1:93159-93421	L5	chr1	93,159	93,421	+	L5	RTE-X	LINE	42,271	TCTCTTTATTTGCTTCTGCTAATTAAAAAATCAGAGCTAAAGATACTTAAACACTACAGTTAAAATGCCATGGTTGTCTATTGGCTTAACGAATTCTCTTATGAAATCAACTCTAAAATGCTATCCATCATAAATCATGAAACGCAATTTTTCTTATTCTCTTTAGAGCTTTACAATTCATCTTAAAGACCAGTGTTTACACTCTCTTCTGTAGGTTGTACAATAACTTTTGGCGAGAAAAAATAAAAGTCTGGCTTTCTGAC
chr1	93,729	94,031	19	221	3	chr1:93729-94031	AluSc_dup12	chr1	93,729	94,031	null	AluSc	Alu	SINE	42,490	GGCCAGGGATGGCGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAGGTCAAGAGATTGAGATCATCTGGGCCAATATGGTGAAATCCCCTCTCTACTAAAAATACAAAAATTATCTGGATGTAGTGGCACACACCTATAATCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATCGCTTGAACACAGGCAGCGGAGGTTGCAGTGAGCTGAGATTGCACCACCGCACACCAGCCTGGTGACAGAGCAAGACTCCGTCTAAAAACAAAAACAAAAACAAAAAAA
chr1	94,078	94,355	69	56	0	chr1:94078-94355	L2_dup16	chr1	94,078	94,355	+	L2	L2	LINE	42,641	CTTCTCTAACACCTCCCCATTCCCCAGCTCGTAATGAACTCGTAAGTAGATTACTACAATCACCTCCCAAATGGTCTTCCTGGCTCCATCAGCCTTGTGACCTTCAAGTTCATTTTCCACATGGATGTCAGAGTAACTTTCTAAAATGAAAATCTGACCACGTTACTCTCTTGCCTAAATCCGCCTATGGCCGCTGTTAGGATCAAGTCTAAACTCCCGACCCTGGAACATCAGGTCTTCGTGCTCTGTTCACTGCTTCTCTACCTCACCTGCAACCA
chr1	94,520	94,816	162	48	0	chr1:94520-94816	MLT1H	chr1	94,520	94,816	null	MLT1H	ERVL-MaLR	LTR	42,840	AAGAAAAGGAGCCTCTTTGCCTCTTTACCCTAATCTGGGCAAGCCTTGCAACCTGATTTGCCAAAAAAATATGAAGGAAGCAATGTGATGTGATTTTCCAGGCTAGAATGTAAGAAGCCTTGGAGCTTCTGCTTTTACTGTCTTCAGATGCTGCCTGAAACCACTGTAAGAAGCTCTAACCTACTGGAGGATAAGGGGTGAGCCCAAGAGCATCAAGGCTCCCATCAACAGCCAGTCCTGTGAGTGAGGCCATCTTGGACCTGCCAGCTCAGTAAACCCTTTTGCTGAACACAGCCC
chr1	94,820	95,080	3	58	0	chr1:94820-95080	AluY_dup25	chr1	94,820	95,080	null	AluY	Alu	SINE	42,967	GGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACAGTGAAACACAGTCTCTACTAAAAAATAAAAAATAAAAAAAAATTAGCCAGGCGTGGTGGTAGGTGCCTGTAGTCTCAGCTACTTGGGAGCCTGAGGCAGGAGAATGACGTGAACCCAGGAGGCAGAGCTTGCAGTGAGCCTAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCGAGATTCTGACTCAAAAAAAAAAAAAAAAAAAAAAAGAAAA
chr1	97,802	98,085	124	68	0	chr1:97802-98085	MLT1I_dup1	chr1	97,802	98,085	+	MLT1I	ERVL-MaLR	LTR	44,137	CTGGTTCTCCTTCTAGAGACATGGTAGGATTGCAATTTCATACCATCCTTGAAGTTAGAGAGAGCCACGTGACTCATTTAGCCAATGAACTGTGAGCAGAATGACATGTCACTTCCAGCTGAAGCTTTAACAATCTGAGAGACATTCATACATTTTCCATGTGCTGTAGCCTTATACCCAAAGCCTGGGTCCCAAGTGACCATGACAGGCAGAGCTCCCTGTTGAGCCACAGAGATTTAGAGAATGGCTGTTAACACAGCATAATCCAGCCCATCCTGACTAAT
chr1	99,118	99,397	20	28	2	chr1:99118-99397	AluSg4_dup1	chr1	99,118	99,397	null	AluSg4	Alu	SINE	44,676	GGCCAGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAACGTGGGTGGATCATGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATAGTGAAACCTCATCTCTACTAAAAATACAAAAAAATTAGCTAGGCACGGTGGCAGACACCTGTAATCCCAGCTACTTGGGCGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAAGTTGCAGTGAGTCGAGATTGCACCAATGCACTCCAGCCCAGGTGACAGTGTGAGACTCTGTC
chr1	99,724	99,796	207	21	1	chr1:99724-99796	L3_dup4	chr1	99,724	99,796	+	L3	CR1	LINE	44,944	GTGTTGGTTAATAAGTCAATGTGAACTGGGAGGGGAGATTTTTCAGGAGTGCCACAGGGCTCTCCCTTTAATC
chr1	99,885	100,292	197	12	1	chr1:99885-100292	MamRep605	chr1	99,885	100,292	null	MamRep605	LTR	LTR?	45,005	AATATTACTGTCCCTTTAGGCAAGATTATCCTTATGATAAGGGAGAGTGAATTAAGCTATTTTGGCTGAGGCATATTTTTATAAATTCATCCAATTAGCTTCCCTTGTTGTAGTTTTGGCTCACCAAACATTGTTCTCATTATAATTTAGCATCCCATATAATTTCATCTGCAGGGAGAGTCTGTACTAGGCATGGCGATGCTTACATGTCAGCCTGTGTGACTGCAAGAGTCTCAGTACAATTTGATAACATGGCACTCAGATTCTAGACATTATTCTCTGTGTGCTTAGTGAGTGTGATGACATAACCTTCAGAAAGA...
chr1	100,344	100,421	192	20	1	chr1:100344-100421	MamRep605_dup1	chr1	100,344	100,421	null	MamRep605	LTR	LTR?	45,221	TTAGAGCAGAAACATGGAGAATCACCTTAAATGGCAAATTGGCTTCTGGTCTTGCATAAGACTTCATTGAGGCCTAAT
chr1	101,056	101,352	30	209	3	chr1:101056-101352	AluSz_dup25	chr1	101,056	101,352	+	AluSz	Alu	SINE	45,540	GGCCGGGTACAGTGGCTCATGCCTGTAATTCCAGTACTTTGGGAGGCCAAGGTGGGCAGGTCACTTGAGGTCAGCAGTTCAAGACCAGCCTCGTCAACATGGTAACACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCCTGGTGGCTCATGCCTGTAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATTCCTTGAACCCAGAAGGTGGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTAGGTGACACAGCAAGACTCTGTCAAAAAAAAAAAAAGAAA
chr1	101,404	101,690	28	77	2	chr1:101404-101690	AluJr_dup17	chr1	101,404	101,690	+	AluJr	Alu	SINE	45,700	CACATGTGTAATCCCAGCATTTTGAGATGCCAAGGTGGCAGGATCACTTGAGACCAGGAGTTCGCAACCAGCCTGGACAACATAGGGAGACTCCATCTCCACACACGCCAAAAAAAATTTTAAATAGCCAGGTATAGTGGTACTTCCTGTAATCCCATCTACTTGGGAGGCTAAGGTGGGAGAATCACCCAACCTCAGGAGTTCAGGGCTTCAGCAAGCCATGATCATATCACTGCACTCCAGCCTCAGCAACAGAGCAAGATCCTATCTCAAAAAAAAAAAAAAAA
chr1	101,719	101,821	110	60	0	chr1:101719-101821	L1M5_dup7	chr1	101,719	101,821	+	L1M5	L1	LINE	45,839	TAAAAATAAATGTATTAAGTATGAACAACAAAAAAGCTAGTAAAGGTTGAACAACAACTATCCTTAGGAAAGTGGAAATAATGTATTAATAAATATGAAAGCA
chr1	101,822	102,122	28	64	2	chr1:101822-102122	AluSx_dup22	chr1	101,822	102,122	+	AluSx	Alu	SINE	45,882	GGCTAGCCACGGTGACTCACATCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAATCTTGTCTCTCCTACAAATACAAAAACTAGCCAGGCTTGGTTGTGCACTCCTGTAATTCGAGCTACTTGGGAGGCTGAGGCAGGAGAATCTCTTGAACCTGAGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCTGGGGCAACAGAGTGACACTCCATCTCAAAATAAATAAATAAGAAA
chr1	102,123	102,194	160	58	0	chr1:102123-102194	L1M5_dup8	chr1	102,123	102,194	+	L1M5	L1	LINE	46,021	GCAGAAACTAATAAACTAGAAAACAGAAACATAGAACTAATTTATAAATCAAAGCACTATGCCTTGAAAAGA
chr1	102,783	102,975	190	15	1	chr1:102783-102975	L3_dup5	chr1	102,783	102,975	+	L3	CR1	LINE	46,306	TGGATAAAGACAGAGATCACATATTAATAAAATTTGCACAAAGTCGGCAAATTGTTGAAAGGGAAGGCTAAGATGATTAATAAAATCAAGAGCCAGATGATCTCAACAACCTGAAATAACTGGCTGACAACCAATTTGAATAACTCCCTGCGGGTGAAGTTCAAAGTACTATTTGGGTTTTTTTTTAAAGTTT
chr1	102,976	103,282	19	221	3	chr1:102976-103282	AluSx3_dup3	chr1	102,976	103,282	+	AluSx3	Alu	SINE	46,389	GGCTGGGTGCAGCGGCTCACGCCTGTAATCCAAGCACTTAGGGAAGCCAAGGTGGGCAGATCATGAAGTCAGGAGTTGAAGACCAGCCCGGTCAACATGGTGAAACCCCATCTCTACTAAAAATAAAAAATTAGCCGGGCCTGCTGGTGGATGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGGGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGATTCCGTCTCAAAAAGTAAAATAAAATAAAATAAAAAA

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Check out the documentation for more information.

TE-Seq Data v1

Transposable Element locus sequences from the human genome (GRCh38).

Dataset Summary

Property	Value
Total records	4,693,511
File size	~894 MB
Sequence column	`sequence` (consume verbatim; no padding trimming)
Labels	`family` (1,180 unique), `class` (13 unique)

Schema

Column	Type	Description
`sequence`	string	DNA sequence (consume as-is)
`family`	string	TE family label (primary training target)
`class`	string	TE class (e.g., SINE, LINE, LTR, DNA)
`chrom`, `start`, `end`	string/int	Genomic coordinates
`strand`	string	+ or -
`subfamily`	string	Subfamily label
Other columns		Locus metadata (ID, loci, group, N1, N2, TE_chrom, TE_start, TE_end)

Usage

Use this dataset as the raw input for run_parquet_etl() in DeepGenopix:

from deepgenopix.etl import run_parquet_etl
run_parquet_etl(
    "te_seqdata.parquet",
    output_dir="data/processed/te_visuals/<run_id>",
    sequence_col="sequence",
    label_col="family",  # or "class"
)

Class Distribution

SINE: 1,770,903
LINE: 1,516,226
LTR: 720,177
DNA: 483,994
Satellite: 7,018
Other: ~2,000 each or fewer

Splits

The ETL builds stratified train/val/test splits automatically:

Tier 1 (< 30 samples): all → train
Tier 2 (30–200): floor-20 val, 10% test, rest → train
Tier 3 (> 200): 10% val, 10% test, rest → train

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