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38.4k
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/analysis/verilog/VerilogLexer.java
VerilogLexer
chkLOC
class VerilogLexer extends JFlexSymbolMatcher implements JFlexJointLexer, Resettable { /** * Calls {@link #phLOC()} if the yystate is not COMMENT or SCOMMENT. */ public void chkLOC() {<FILL_FUNCTION_BODY>} /** * Subclasses must override to get the constant value created by JFlex to ...
if (yystate() != COMMENT() && yystate() != SCOMMENT()) { phLOC(); }
199
36
235
<methods>public non-sealed void <init>() ,public void clearNonSymbolMatchedListener() ,public void clearSymbolMatchedListener() ,public void setNonSymbolMatchedListener(org.opengrok.indexer.analysis.NonSymbolMatchedListener) ,public void setSymbolMatchedListener(org.opengrok.indexer.analysis.SymbolMatchedListener) <var...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/CanonicalRootValidator.java
CanonicalRootValidator
validate
class CanonicalRootValidator { /** * Validates the specified setting, returning an error message if validation * fails. * @return a defined instance if not valid or {@code null} otherwise */ public static String validate(String setting, String elementDescription) {<FILL_FUNCTION_BODY>} ...
// Test that the value ends with the system separator. if (!setting.endsWith(File.separator)) { return elementDescription + " must end with a separator"; } // Test that the value is not like a Windows root (e.g. C:\ or Z:/). if (setting.matches("\\w:(?:[/\\\\]*)")) {...
103
263
366
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/ConfigMerge.java
ConfigMerge
main
class ConfigMerge { private static final String NAME = "ConfigMerge"; private ConfigMerge() { } /** * Merge base and new configuration. * @param cfgBase base configuration * @param cfgNew new configuration, will receive properties from the base configuration * @throws Exception ex...
Getopt getopt = new Getopt(argv, "h?"); try { getopt.parse(); } catch (ParseException ex) { System.err.println(NAME + ": " + ex.getMessage()); bUsage(System.err); System.exit(1); } int cmd; getopt.reset(); while ...
750
545
1,295
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/ConfigurationClassLoader.java
ConfigurationClassLoader
loadClass
class ConfigurationClassLoader extends ClassLoader { private static final Set<String> allowedClasses = Set.of( ArrayList.class, AuthControlFlag.class, AuthorizationEntity.class, AuthorizationPlugin.class, AuthorizationStack.class, Collections....
if (!allowedClasses.contains(name)) { throw new IllegalAccessError(name + " is not allowed to be used in configuration"); } return getClass().getClassLoader().loadClass(name);
277
54
331
<methods>public void clearAssertionStatus() ,public final java.lang.Package getDefinedPackage(java.lang.String) ,public final java.lang.Package[] getDefinedPackages() ,public java.lang.String getName() ,public final java.lang.ClassLoader getParent() ,public static java.lang.ClassLoader getPlatformClassLoader() ,public ...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/Filter.java
PatternList
add
class PatternList extends ArrayList<String> { private static final long serialVersionUID = -6883390970972775838L; private final Filter owner; public PatternList(Filter owner) { this.owner = owner; } @Override public boolean add(String pattern) {<FILL_FUNCT...
boolean ret = super.add(pattern); if (ret) { owner.addPattern(pattern); } return ret;
105
38
143
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/Group.java
Group
getAllProjects
class Group implements Comparable<Group>, Nameable { static { ClassUtil.remarkTransientFields(Group.class); } private String name; /** * Group regexp pattern. * * No project matches the empty pattern of "" however this group can still * be used as a superior group for other...
Set<Project> projectsTmp = new TreeSet<>(); projectsTmp.addAll(getRepositories()); projectsTmp.addAll(getProjects()); for (Group grp : getDescendants()) { projectsTmp.addAll(grp.getAllProjects()); } return projectsTmp;
1,825
87
1,912
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/IgnoredNames.java
IgnoredNames
ignore
class IgnoredNames implements Serializable { private static final long serialVersionUID = 1L; private static final String FILE_PREFIX = "f:"; private static final String DIR_PREFIX = "d:"; private IgnoredFiles ignoredFiles; private IgnoredDirs ignoredDirs; public IgnoredNames() { ignor...
if (file.isFile()) { return ignoredFiles.match(file); } else { return ignoredDirs.match(file); }
679
42
721
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/IncludeFiles.java
IncludeFiles
getFooterIncludeFileContent
class IncludeFiles { /** * Reload the content of all include files. */ public void reloadIncludeFiles() { getBodyIncludeFileContent(true); getHeaderIncludeFileContent(true); getFooterIncludeFileContent(true); getForbiddenIncludeFileContent(true); getHttpHeaderIn...
if (footer == null || force) { footer = getFileContent(new File(RuntimeEnvironment.getInstance().getIncludeRootPath(), Configuration.FOOTER_INCLUDE_FILE)); } return footer;
930
61
991
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/IndexSearcherFactory.java
IndexSearcherFactory
newSearcher
class IndexSearcherFactory extends SearcherFactory { public IndexSearcher newSearcher(IndexReader reader) { return newSearcher(reader, null); } @Override public IndexSearcher newSearcher(IndexReader reader, IndexReader prev) {<FILL_FUNCTION_BODY>} }
// The previous IndexReader is not used here. return new IndexSearcher(reader, RuntimeEnvironment.getInstance().getSearchExecutor());
85
35
120
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/IndexTimestamp.java
IndexTimestamp
stamp
class IndexTimestamp { private Date lastModified; private static final Logger LOGGER = LoggerFactory.getLogger(IndexTimestamp.class); /** * Get the date of the last index update. * * @return the time of the last index update. */ public Date getDateForLastIndexRun() { Runtim...
RuntimeEnvironment env = RuntimeEnvironment.getInstance(); File timestamp = new File(env.getDataRootFile(), "timestamp"); String purpose = "used for timestamping the index database."; if (timestamp.exists()) { if (!timestamp.setLastModified(System.currentTimeMillis())) { ...
211
181
392
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/OpenGrokThreadFactory.java
OpenGrokThreadFactory
newThread
class OpenGrokThreadFactory implements ThreadFactory { private final String threadPrefix; public static final String PREFIX = "OpenGrok-"; public OpenGrokThreadFactory(String name) { if (!name.endsWith("-")) { threadPrefix = name + "-"; } else { threadPrefix = name;...
Thread thread = Executors.defaultThreadFactory().newThread(Objects.requireNonNull(runnable, "runnable")); thread.setName(PREFIX + threadPrefix + thread.getId()); return thread;
127
55
182
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/PathAccepter.java
PathAccepter
accept
class PathAccepter { private static final Logger LOGGER = LoggerFactory.getLogger(PathAccepter.class); private final IgnoredNames ignoredNames; private final Filter includedNames; /** * Package-private to be initialized from the runtime environment. */ PathAccepter(IgnoredNames ignoredN...
if (!includedNames.isEmpty() && // the filter should not affect directory names (!(file.isDirectory() || includedNames.match(file)))) { LOGGER.finer(() -> String.format("not including '%s'", launderLog(file.getAbsolutePath()))); return false; } ...
207
144
351
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/PatternUtil.java
PatternUtil
compilePattern
class PatternUtil { private PatternUtil() { // private to enforce static } /** * A check if a pattern contains at least one pair of parentheses meaning * that there is at least one capture group. This group must not be empty. */ private static final String PATTERN_SINGLE_GROUP = ...
if (!pattern.matches(PATTERN_SINGLE_GROUP)) { throw new PatternSyntaxException(PATTERN_MUST_CONTAIN_GROUP, pattern, 0); } return Pattern.compile(pattern).toString();
310
65
375
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/StatsdConfig.java
StatsdConfig
getForHelp
class StatsdConfig { private int port; private String host; private boolean enabled; private StatsdFlavor flavor; public String getHost() { return host; } public void setHost(String host) { this.host = host; } public int getPort() { return port; } ...
StatsdConfig res = new StatsdConfig(); res.setHost("foo.bar"); res.setPort(8125); res.setFlavor(StatsdFlavor.ETSY); return res;
255
61
316
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/SuperIndexSearcherFactory.java
SuperIndexSearcherFactory
newSearcher
class SuperIndexSearcherFactory extends SearcherFactory { @Override public SuperIndexSearcher newSearcher(IndexReader r, IndexReader prev) {<FILL_FUNCTION_BODY>} }
// The previous IndexReader is not used here. return new SuperIndexSearcher(r, RuntimeEnvironment.getInstance().getSearchExecutor());
55
36
91
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/configuration/WatchDogService.java
WatchDogService
start
class WatchDogService { private static final Logger LOGGER = LoggerFactory.getLogger(WatchDogService.class); private Thread watchDogThread; private WatchService watchDogWatcher; public static final int THREAD_SLEEP_TIME = 2000; WatchDogService() { } /** * Starts a watch dog service ...
stop(); if (directory == null || !directory.isDirectory() || !directory.canRead()) { LOGGER.log(Level.INFO, "Watch dog cannot be started - invalid directory: {0}", directory); return; } LOGGER.log(Level.INFO, "Starting watchdog in: {0}", directory); watc...
398
581
979
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AbstractCache.java
AbstractCache
clearFile
class AbstractCache implements Cache { public boolean hasCacheForFile(File file) throws CacheException { try { return getCachedFile(file).exists(); } catch (CacheException ex) { throw new CacheException(ex); } } /** * Get a <code>File</code> object de...
File historyFile; try { historyFile = getCachedFile(new File(RuntimeEnvironment.getInstance().getSourceRootPath() + path)); } catch (CacheException ex) { LOGGER.log(Level.WARNING, String.format("cannot get cached file for file '%s'" + " - the cache en...
769
107
876
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AccuRevAnnotationParser.java
AccuRevAnnotationParser
processStream
class AccuRevAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(AccuRevAnnotationParser.class); private static final Pattern ANNOTATION_PATTERN = Pattern.compile("^\\s+(\\d+.\\d+)\\s+(\\w+)"); // version, user /** * Store a...
try (BufferedReader reader = new BufferedReader(new InputStreamReader(input))) { String line; int lineno = 0; try { while ((line = reader.readLine()) != null) { ++lineno; Matcher matcher = ANNOTATION_PAT...
262
303
565
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AccuRevHistoryParser.java
AccuRevHistoryParser
parse
class AccuRevHistoryParser implements Executor.StreamHandler { private AccuRevRepository repository; private History history; /** * Parse the history for the specified file. * * @param file the file to parse history for * @param repos Pointer to the {@code AccuRevRepository} * @re...
repository = (AccuRevRepository) repos; history = null; String relPath = repository.getDepotRelativePath(file); /* * When the path given is really just the root to the source * workarea, no history is available, create fake. */ String rootRelative...
862
239
1,101
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/Annotation.java
Annotation
generateColors
class Annotation { private static final Logger LOGGER = LoggerFactory.getLogger(Annotation.class); AnnotationData annotationData; private final Map<String, String> desc = new HashMap<>(); // maps revision to description private final Map<String, Integer> fileVersions = new HashMap<>(); // maps revisi...
List<Color> orderedColors = RainbowColorGenerator.getOrderedColors(); Map<String, String> colorMap = new HashMap<>(); final List<String> revisions = getRevisions() .stream() /* * Greater file version means...
1,672
367
2,039
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AnnotationData.java
AnnotationData
equals
class AnnotationData implements Serializable { private static final long serialVersionUID = -1; // for serialization public AnnotationData() { } public AnnotationData(String filename) { this.filename = filename; } private List<AnnotationLine> annotationLines = new ArrayList<>(); ...
return Optional.ofNullable(obj) .filter(other -> getClass() == other.getClass()) .map(AnnotationData.class::cast) .filter(other -> Objects.deepEquals(getLines(), other.getLines())) .filter(other -> Objects.equals(getFilename(), other.getFilename()...
1,585
174
1,759
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AnnotationDataClassLoader.java
AnnotationDataClassLoader
loadClass
class AnnotationDataClassLoader extends ClassLoader { private static final Set<String> allowedClasses = Set.of( ArrayList.class, Collections.class, AnnotationData.class, AnnotationLine.class, String.class, XMLDecoder.class ).stream().map(ja...
if (!allowedClasses.contains(name)) { throw new IllegalAccessError(name + " is not allowed to be used in AnnotationData object"); } return getClass().getClassLoader().loadClass(name);
131
57
188
<methods>public void clearAssertionStatus() ,public final java.lang.Package getDefinedPackage(java.lang.String) ,public final java.lang.Package[] getDefinedPackages() ,public java.lang.String getName() ,public final java.lang.ClassLoader getParent() ,public static java.lang.ClassLoader getPlatformClassLoader() ,public ...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/AnnotationLine.java
AnnotationLine
equals
class AnnotationLine implements Serializable { private static final long serialVersionUID = 3402729223485872826L; private String revision; private String author; private boolean enabled; private String displayRevision; public AnnotationLine() { // for serialization } /** ...
return Optional.ofNullable(obj) .filter(other -> getClass() == other.getClass()) .map(AnnotationLine.class::cast) .filter(other -> Objects.equals(isEnabled(), other.isEnabled())) .filter(other -> Objects.equals(getAuthor(), other.getAuthor())) ...
527
138
665
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BazaarAnnotationParser.java
BazaarAnnotationParser
processStream
class BazaarAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(BazaarAnnotationParser.class); /** * Store annotation created by processStream. */ private final Annotation annotation; /** * Pattern used to extract author/rev...
try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { String line = ""; int lineno = 0; Matcher matcher = BLAME_PATTERN.matcher(line); while ((line = in.readLine()) != null) { ++lineno; matcher.reset(line); ...
271
208
479
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BazaarHistoryParser.java
BazaarHistoryParser
populateCommitFilesInHistoryEntry
class BazaarHistoryParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(BazaarHistoryParser.class); private String myDir; private final List<HistoryEntry> entries = new ArrayList<>(); private final BazaarRepository repository; BazaarHistoryParser...
if (!(currentLine.startsWith("modified:") || currentLine.startsWith("added:") || currentLine.startsWith("removed:"))) { // The list of files is prefixed with blanks. currentLine = currentLine.trim(); int idx = currentLine.indexOf(" => "); if (id...
1,813
230
2,043
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BazaarTagEntry.java
BazaarTagEntry
compareTo
class BazaarTagEntry extends TagEntry { public BazaarTagEntry(int revision, String tag) { super(revision, tag); } @Override public int compareTo(HistoryEntry that) {<FILL_FUNCTION_BODY>} }
assert this.revision != NOREV : "BazaarTagEntry created without tag specified.specified"; return Integer.compare(this.revision, Integer.parseInt(that.getRevision()));
71
53
124
<methods>public int compareTo(org.opengrok.indexer.history.TagEntry) ,public abstract int compareTo(org.opengrok.indexer.history.HistoryEntry) ,public boolean equals(java.lang.Object) ,public java.util.Date getDate() ,public java.lang.String getTags() ,public int hashCode() ,public void setTags(java.lang.String) <varia...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BazaarTagParser.java
BazaarTagParser
processStream
class BazaarTagParser implements Executor.StreamHandler { /** * Store tag entries created by processStream. */ private final NavigableSet<TagEntry> entries = new TreeSet<>(); /** * Returns the set of entries that has been created. * * @return entries a set of tag entries */ ...
try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { String line; while ((line = in.readLine()) != null) { String[] parts = line.split(" *"); if (parts.length < 2) { throw new IOException("Tag line contains mor...
141
277
418
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BitKeeperAnnotationParser.java
BitKeeperAnnotationParser
processStream
class BitKeeperAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(BitKeeperAnnotationParser.class); /** * Store annotation created by processStream. */ private final Annotation annotation; /** * @param fileName the name of ...
final BufferedReader in = new BufferedReader(new InputStreamReader(input)); for (String line = in.readLine(); line != null; line = in.readLine()) { final String[] fields = line.split("\t"); if (fields.length >= 2) { final String author = fields[0]; ...
278
147
425
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BitKeeperHistoryParser.java
BitKeeperHistoryParser
processStream
class BitKeeperHistoryParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(BitKeeperHistoryParser.class); /** * Parses dates. */ private final SimpleDateFormat dateFormat; /** * Store entries processed from executor output. */ ...
HistoryEntry entry = null; final BufferedReader in = new BufferedReader(new InputStreamReader(input)); for (String line = in.readLine(); line != null; line = in.readLine()) { if (line.startsWith("D ")) { entry = null; try { final ...
439
336
775
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BitKeeperTagEntry.java
BitKeeperTagEntry
compareTo
class BitKeeperTagEntry extends TagEntry { protected String changeset; public BitKeeperTagEntry(String changeset, Date date, String tag) { super(date, tag); this.changeset = changeset; } @Override public int compareTo(HistoryEntry that) {<FILL_FUNCTION_BODY>} }
assert this.date != null : "BitKeeper TagEntry created without date specified"; return this.date.compareTo(that.getDate());
94
40
134
<methods>public int compareTo(org.opengrok.indexer.history.TagEntry) ,public abstract int compareTo(org.opengrok.indexer.history.HistoryEntry) ,public boolean equals(java.lang.Object) ,public java.util.Date getDate() ,public java.lang.String getTags() ,public int hashCode() ,public void setTags(java.lang.String) <varia...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BitKeeperTagParser.java
BitKeeperTagParser
processStream
class BitKeeperTagParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(BitKeeperTagParser.class); /** * Parses dates. */ private final SimpleDateFormat dateFormat; /** * Store tag entries created by {@link #processStream(InputStream)}....
String revision = null; Date date = null; String tag; final BufferedReader in = new BufferedReader(new InputStreamReader(input)); for (String line = in.readLine(); line != null; line = in.readLine()) { if (line.startsWith("D ")) { final String[] fiel...
363
228
591
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/BoundaryChangesets.java
IdWithProgress
getBoundaryChangesetIDs
class IdWithProgress { private final Progress progress; private final String id; IdWithProgress(String id, Progress progress) { this.id = id; this.progress = progress; } public String getId() { return id; } public Progress ge...
reset(); Level logLevel = Level.FINE; LOGGER.log(logLevel, "getting boundary changesets for {0}", repository); Statistics stat = new Statistics(); try (Progress progress = new Progress(LOGGER, String.format("changesets visited of %s", this.repository), logLeve...
182
184
366
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/CVSAnnotationParser.java
CVSAnnotationParser
processStream
class CVSAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(CVSAnnotationParser.class); /** * Pattern used to extract author/revision from {@code cvs annotate}. */ private static final Pattern ANNOTATE_PATTERN = Pattern.compile("([\\....
BufferedReader in = new BufferedReader(new InputStreamReader(input)); String line = ""; int lineno = 0; boolean hasStarted = false; Matcher matcher = ANNOTATE_PATTERN.matcher(line); while ((line = in.readLine()) != null) { // Skip header if (!hasS...
274
273
547
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/CVSHistoryParser.java
CVSHistoryParser
parseTag
class CVSHistoryParser implements Executor.StreamHandler { private enum ParseState { NAMES, TAG, REVISION, METADATA, COMMENT } private History history; private CVSRepository cvsRepository = new CVSRepository(); /** * Process the output from the log command and insert the {@link Histor...
String[] pair = s.trim().split(": "); if (pair.length != 2) { // // Overriding processStream() thus need to comply with the // set of exceptions it can throw. // throw new IOException("Failed to parse tag: '" + s + "'"); } else { ...
1,530
174
1,704
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/CacheUtil.java
CacheUtil
clearCacheDir
class CacheUtil { private static final Logger LOGGER = LoggerFactory.getLogger(CacheUtil.class); private CacheUtil() { // private to enforce static } /** * * @param repository {@link RepositoryInfo} instance * @param cache {@link Cache} instance * @return absolute director...
String histDir = CacheUtil.getRepositoryCacheDataDirname(repository, cache); if (histDir != null) { // Remove all files which constitute the history cache. try { IOUtils.removeRecursive(Paths.get(histDir)); } catch (NoSuchFileException ex) { ...
347
145
492
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/ClearCaseAnnotationParser.java
ClearCaseAnnotationParser
processStream
class ClearCaseAnnotationParser implements Executor.StreamHandler { /** * Store annotation created by processStream. */ private final Annotation annotation; /** * @param fileName the name of the file being annotated */ public ClearCaseAnnotationParser(String fileName) { ann...
String line; try (BufferedReader in = new BufferedReader( new InputStreamReader(input))) { while ((line = in.readLine()) != null) { String[] parts = line.split("\\|"); String aAuthor = parts[0]; String aRevision = parts[1]; ...
166
121
287
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/ClearCaseHistoryParser.java
ClearCaseHistoryParser
processStream
class ClearCaseHistoryParser implements Executor.StreamHandler { private History history; private ClearCaseRepository repository = new ClearCaseRepository(); History parse(File file, Repository repos) throws HistoryException { repository = (ClearCaseRepository) repos; try { Exe...
BufferedReader in = new BufferedReader(new InputStreamReader(input)); List<HistoryEntry> entries = new ArrayList<>(); String s; HistoryEntry entry = null; while ((s = in.readLine()) != null) { if (!"create version".equals(s) && !"create directory version".equals(s)) ...
387
458
845
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/DirectoryHistoryReader.java
DirectoryHistoryReader
readFromHistory
class DirectoryHistoryReader { private static final Logger LOGGER = LoggerFactory.getLogger(DirectoryHistoryReader.class); // This is a giant hash constructed in this class. // It maps date -> author -> (comment, revision, displayRevision) -> [ list of files ] private final Map<Date, Map<String, Map<L...
for (HistoryEntry entry : hist.getHistoryEntries()) { if (entry.isActive()) { String comment = entry.getMessage(); String cauthor = entry.getAuthor(); Date cdate = entry.getDate(); String revision = entry.getRevision(); ...
1,822
116
1,938
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/FileAnnotationCache.java
FileAnnotationCache
readAnnotation
class FileAnnotationCache extends AbstractCache implements AnnotationCache { private static final Logger LOGGER = LoggerFactory.getLogger(FileAnnotationCache.class); private Counter fileAnnotationCacheHits; private Counter fileAnnotationCacheMisses; private static final String ANNOTATION_CACHE_DIR_NA...
File cacheFile; try { cacheFile = getCachedFile(file); } catch (CacheException e) { LOGGER.log(Level.WARNING, "failed to get annotation cache file", e); return null; } try { Statistics statistics = new Statistics(); An...
1,876
165
2,041
<methods>public non-sealed void <init>() ,public List<java.lang.String> clearCache(Collection<org.opengrok.indexer.history.RepositoryInfo>) ,public void clearFile(java.lang.String) ,public java.lang.String getCacheFileSuffix() ,public boolean hasCacheForFile(java.io.File) throws org.opengrok.indexer.history.CacheExcept...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/FileCollector.java
FileCollector
accept
class FileCollector extends ChangesetVisitor { private final Set<String> files; public FileCollector(boolean consumeMergeChangesets) { super(consumeMergeChangesets); files = new HashSet<>(); } public void accept(RepositoryWithHistoryTraversal.ChangesetInfo changesetInfo) {<FILL_FUNCTIO...
if (changesetInfo.renamedFiles != null) { files.addAll(changesetInfo.renamedFiles); } if (changesetInfo.files != null) { files.addAll(changesetInfo.files); } if (changesetInfo.deletedFiles != null) { files.addAll(changesetInfo.deletedFiles); ...
204
101
305
<methods><variables>boolean consumeMergeChangesets
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/GitTagEntry.java
GitTagEntry
compareTo
class GitTagEntry extends TagEntry { private final String hash; GitTagEntry(String hash, Date date, String tags) { super(date, tags); this.hash = hash; } /** * Gets the immutable, initialized Git hash value. */ String getHash() { return hash; } @Override...
assert this.date != null : "Git TagEntry created without date specified"; return this.date.compareTo(that.getDate());
119
38
157
<methods>public int compareTo(org.opengrok.indexer.history.TagEntry) ,public abstract int compareTo(org.opengrok.indexer.history.HistoryEntry) ,public boolean equals(java.lang.Object) ,public java.util.Date getDate() ,public java.lang.String getTags() ,public int hashCode() ,public void setTags(java.lang.String) <varia...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/History.java
History
getHistoryEntries
class History implements Serializable { private static final long serialVersionUID = -1; static final String TAGS_SEPARATOR = ", "; /** Entries in the log. The first entry is the most recent one. */ private List<HistoryEntry> entries; /** * Track renamed files, so they can be treated in spec...
offset = Math.max(offset, 0); limit = offset + limit > entries.size() ? entries.size() - offset : limit; return entries.subList(offset, offset + limit);
1,502
52
1,554
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/HistoryClassLoader.java
HistoryClassLoader
loadClass
class HistoryClassLoader extends ClassLoader { private static final Set<String> allowedClasses = Set.of( ArrayList.class, Collections.class, Date.class, HashMap.class, History.class, HistoryEntry.class, RepositoryInfo.class, ...
if (!allowedClasses.contains(name)) { throw new IllegalAccessError(name + " is not allowed to be used in History object"); } return getClass().getClassLoader().loadClass(name);
150
55
205
<methods>public void clearAssertionStatus() ,public final java.lang.Package getDefinedPackage(java.lang.String) ,public final java.lang.Package[] getDefinedPackages() ,public java.lang.String getName() ,public final java.lang.ClassLoader getParent() ,public static java.lang.ClassLoader getPlatformClassLoader() ,public ...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/HistoryCollector.java
HistoryCollector
accept
class HistoryCollector extends ChangesetVisitor { List<HistoryEntry> entries; Set<String> renamedFiles; String latestRev; HistoryCollector(boolean consumeMergeChangesets) { super(consumeMergeChangesets); entries = new ArrayList<>(); renamedFiles = new HashSet<>(); } @O...
RepositoryWithHistoryTraversal.CommitInfo commit = changesetInfo.commit; // Make sure to record the revision even though this is a merge changeset // and the collector does not want to consume these. // The changesets are visited from newest to oldest, so record just the first one. ...
129
325
454
<methods><variables>boolean consumeMergeChangesets
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/HistoryEntry.java
HistoryEntry
dump
class HistoryEntry implements Serializable { private static final long serialVersionUID = 1277313126047397131L; private static final Logger LOGGER = LoggerFactory.getLogger(HistoryEntry.class); private String revision; private String displayRevision; private Date date; private String author; ...
LOGGER.log(Level.FINE, "HistoryEntry : revision = {0}", revision); LOGGER.log(Level.FINE, "HistoryEntry : displayRevision = {0}", displayRevision); LOGGER.log(Level.FINE, "HistoryEntry : date = {0}", date); LOGGER.log(Level.FINE, "HistoryEntry : author = {0}"...
1,509
284
1,793
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/HistoryReader.java
HistoryReader
createInternalReader
class HistoryReader extends Reader { private final List<HistoryEntry> entries; private Reader input; public HistoryReader(History history) { entries = history.getHistoryEntries(); } @Override public int read(char @NotNull [] cbuf, int off, int len) throws IOException { if (inp...
StringBuilder str = new StringBuilder(); for (HistoryEntry entry : entries) { str.append(entry.getLine()); } return new StringReader(str.toString());
174
49
223
<methods>public abstract void close() throws java.io.IOException,public void mark(int) throws java.io.IOException,public boolean markSupported() ,public static java.io.Reader nullReader() ,public int read() throws java.io.IOException,public int read(java.nio.CharBuffer) throws java.io.IOException,public int read(char[]...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MercurialAnnotationParser.java
MercurialAnnotationParser
processStream
class MercurialAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(MercurialAnnotationParser.class); private Annotation annotation = null; private final HashMap<String, HistoryEntry> revs; private final File file; /** * Pattern use...
annotation = new Annotation(file.getName()); String line; int lineno = 0; Matcher matcher = ANNOTATION_PATTERN.matcher(""); try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { while ((line = in.readLine()) != null) { ++lineno...
228
265
493
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MercurialHistoryParserRevisionsOnly.java
MercurialHistoryParserRevisionsOnly
parse
class MercurialHistoryParserRevisionsOnly implements Executor.StreamHandler { private final MercurialRepository repository; private final Consumer<BoundaryChangesets.IdWithProgress> visitor; private final Progress progress; MercurialHistoryParserRevisionsOnly(MercurialRepository repository, ...
try { Executor executor = repository.getHistoryLogExecutor(file, sinceRevision, null, true); int status = executor.exec(true, this); if (status != 0) { throw new HistoryException( String.format("Failed to get revisions for: \"%s\" sin...
245
152
397
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MercurialTagEntry.java
MercurialTagEntry
compareTo
class MercurialTagEntry extends TagEntry { public MercurialTagEntry(int revision, String tag) { super(revision, tag); } @Override public int compareTo(HistoryEntry that) {<FILL_FUNCTION_BODY>} }
assert this.revision != NOREV : "Mercurial TagEntry created without revision specified"; String[] revs = that.getRevision().split(":"); assert revs.length == 2 : "Unable to parse revision format"; return Integer.compare(this.revision, Integer.parseInt(revs[0]));
71
85
156
<methods>public int compareTo(org.opengrok.indexer.history.TagEntry) ,public abstract int compareTo(org.opengrok.indexer.history.HistoryEntry) ,public boolean equals(java.lang.Object) ,public java.util.Date getDate() ,public java.lang.String getTags() ,public int hashCode() ,public void setTags(java.lang.String) <varia...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MercurialTagParser.java
MercurialTagParser
processStream
class MercurialTagParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(MercurialTagParser.class); /** * Store tag entries created by processStream. */ private TreeSet<TagEntry> entries = new TreeSet<>(); /** * Returns the set of entries...
try { try (BufferedReader in = new BufferedReader( new InputStreamReader(input))) { String line; while ((line = in.readLine()) != null) { String[] parts = line.split(" *"); if (parts.length < 2) { ...
161
446
607
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MonotoneAnnotationParser.java
MonotoneAnnotationParser
processStream
class MonotoneAnnotationParser implements Executor.StreamHandler { /** * Store annotation created by processStream. */ private final Annotation annotation; /** * Pattern used to extract author/revision from the {@code mnt annotate} command. */ private static final Pattern ANNOTATION...
try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { String line; String author = null; String rev = null; while ((line = in.readLine()) != null) { Matcher matcher = ANNOTATION_PATTERN.matcher(line); if (mat...
239
153
392
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MonotoneHistoryParser.java
MonotoneHistoryParser
parse
class MonotoneHistoryParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(MonotoneHistoryParser.class); private final List<HistoryEntry> entries = new ArrayList<>(); //NOPMD private final MonotoneRepository repository; private final String mydir; ...
try { Executor executor = repository.getHistoryLogExecutor(file, changeset); int status = executor.exec(true, this); if (status != 0) { throw new HistoryException("Failed to get history for: \"" + file.getAbsolutePa...
1,195
144
1,339
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/MonotoneRepository.java
MonotoneRepository
getHistoryGet
class MonotoneRepository extends Repository { private static final Logger LOGGER = LoggerFactory.getLogger(MonotoneRepository.class); private static final long serialVersionUID = 1L; /** * The property name used to obtain the client command for this repository. */ public static final String ...
File directory = new File(getDirectoryName()); try { String filename = (new File(parent, basename)).getCanonicalPath() .substring(getDirectoryName().length() + 1); ensureCommand(CMD_PROPERTY_KEY, CMD_FALLBACK); String[] argv = {RepoCommand, "cat"...
1,647
202
1,849
<methods>public final java.lang.String determineBranch() throws java.io.IOException,public final java.lang.String determineCurrentVersion() throws java.io.IOException,public final java.lang.String determineParent() throws java.io.IOException,public static java.lang.String format(java.util.Date) ,public boolean getHisto...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/PerforceAnnotationParser.java
PerforceAnnotationParser
processStream
class PerforceAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(PerforceAnnotationParser.class); /** * Store annotation created by processStream. */ private final Annotation annotation; private final PerforceRepository repo; ...
// Pass null for revision to get all history for the file. PerforceHistoryParser parser = new PerforceHistoryParser(repo); List<HistoryEntry> revisions = parser.getRevisions(file, null).getHistoryEntries(); HashMap<String, String> revAuthor = new HashMap<>(); for (HistoryEntry e...
265
380
645
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RCSAnnotationParser.java
RCSAnnotationParser
processStream
class RCSAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(RCSAnnotationParser.class); private Annotation annotation = null; private final File file; /** * Pattern used to extract author/revision from {@code blame}. */ priva...
annotation = new Annotation(file.getName()); String line; int lineno = 0; Matcher matcher = ANNOTATION_PATTERN.matcher(""); try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { while ((line = in.readLine()) != null) { ++lineno...
200
213
413
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RCSHistoryParser.java
RCSHistoryParser
parseFile
class RCSHistoryParser { private static final Logger LOGGER = LoggerFactory.getLogger(RCSHistoryParser.class); private static File readCVSRoot(File root, File cvsDir, String name) throws IOException { String cvsroot = readFirstLine(root); if (cvsroot == null) { return null; ...
File rcsfile = getRCSFile(file); if (rcsfile == null) { return null; } try { Archive archive = new Archive(rcsfile.getPath()); Version ver = archive.getRevisionVersion(); Node n = archive.findNode(ver); n = n.root(); ...
967
179
1,146
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RCSRepository.java
RCSRepository
getHistoryGet
class RCSRepository extends Repository { private static final Logger LOGGER = LoggerFactory.getLogger(RCSRepository.class); private static final long serialVersionUID = 1L; /** * This property name is used to obtain the command to get annotation for this repository. */ private static final ...
try { File file = new File(parent, basename); File rcsFile = getRCSFile(file); try (InputStream in = new RCSget(rcsFile.getPath(), rev)) { copyBytes(out::write, in); } return true; } catch (IOException ioe) { LOGGER...
1,244
130
1,374
<methods>public final java.lang.String determineBranch() throws java.io.IOException,public final java.lang.String determineCurrentVersion() throws java.io.IOException,public final java.lang.String determineParent() throws java.io.IOException,public static java.lang.String format(java.util.Date) ,public boolean getHisto...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RCSget.java
RCSget
read
class RCSget extends InputStream { private final InputStream stream; /** * Pass null in version to get current revision. * @param file file contents to get * @param version specified revision or @{code null} * @throws java.io.IOException if I/O exception occurred * @throws java.io.File...
throw new IOException("use a BufferedInputStream. just read() is not supported!");
516
23
539
<methods>public void <init>() ,public int available() throws java.io.IOException,public void close() throws java.io.IOException,public synchronized void mark(int) ,public boolean markSupported() ,public static java.io.InputStream nullInputStream() ,public abstract int read() throws java.io.IOException,public int read(b...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RazorHistoryParser.java
RazorHistoryParser
parseContents
class RazorHistoryParser { private static final Logger LOGGER = LoggerFactory.getLogger(RazorHistoryParser.class); private RazorRepository repository = new RazorRepository(); private static final Pattern ACTION_TYPE_PATTERN = Pattern.compile("^(INTRODUCE|CHECK-OUT|CHECK-IN|UN-CHECK-OUT|RENAME...
String line; ArrayList<HistoryEntry> entries = new ArrayList<>(); HistoryEntry entry = null; boolean ignoreEntry = false; boolean seenActionType = false; boolean lastWasTitle = true; Matcher actionMatcher = ACTION_TYPE_PATTERN.matcher(""); Matcher info...
703
969
1,672
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RepoRepository.java
RepoRepository
isRepositoryFor
class RepoRepository extends Repository { // TODO: cache all of the GitRepositories within the class private static final long serialVersionUID = 1L; /** * The property name used to obtain the client command for this repository. */ public static final String CMD_PROPERTY_KEY = "org.opengrok.i...
if (file.isDirectory()) { File f = new File(file, ".repo"); return f.exists() && f.isDirectory(); } return false;
543
47
590
<methods>public final java.lang.String determineBranch() throws java.io.IOException,public final java.lang.String determineCurrentVersion() throws java.io.IOException,public final java.lang.String determineParent() throws java.io.IOException,public static java.lang.String format(java.util.Date) ,public boolean getHisto...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RepositoriesHelp.java
RepositoriesHelp
getText
class RepositoriesHelp { public static String getText() {<FILL_FUNCTION_BODY>} private static void appendClassesHelp( StringBuilder builder, List<Class<? extends Repository>> clazzes) { clazzes.sort((o1, o2) -> o1.getSimpleName().compareToIgnoreCase(o2.getSimpleName())); for (Clas...
StringBuilder builder = new StringBuilder(); builder.append("Enabled repositories:"); builder.append(System.lineSeparator()); builder.append(System.lineSeparator()); List<Class<? extends Repository>> clazzes = RepositoryFactory.getRepositoryClasses(); appendClassesHelp(b...
338
210
548
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RepositoryLookupUncached.java
RepositoryLookupUncached
getRepository
class RepositoryLookupUncached implements RepositoryLookup { private static final Logger LOGGER = LoggerFactory.getLogger(RepositoryLookupUncached.class); @Override public Repository getRepository(final Path filePath, Set<String> repoParentDirs, Map<String, Repository> repositories, PathCanonicaliz...
Path path = filePath; while (path != null) { String nextPath = path.toString(); for (String rootKey : repoParentDirs) { String rel; try { rel = canonicalizer.resolve(path, path.getFileSystem().getPath(rootKey)); ...
153
236
389
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RepositoryWithHistoryTraversal.java
ChangesetInfo
doCreateCache
class ChangesetInfo { CommitInfo commit; public SortedSet<String> files; public Set<String> renamedFiles; public Set<String> deletedFiles; public Boolean isMerge; ChangesetInfo(CommitInfo commit) { this.commit = commit; this.files = new TreeSet<>(...
RuntimeEnvironment env = RuntimeEnvironment.getInstance(); FileCollector fileCollector = null; Project project = Project.getProject(directory); if (project != null && isHistoryBasedReindex() && isHistoryEnabled()) { // The fileCollector has to go through merge changesets no...
607
1,027
1,634
<methods>public non-sealed void <init>() ,public abstract void accept(java.lang.String, Consumer<org.opengrok.indexer.history.BoundaryChangesets.IdWithProgress>, org.opengrok.indexer.util.Progress) throws org.opengrok.indexer.history.HistoryException,public int getPerPartesCount() <variables>private static final java.u...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/RepositoryWithPerPartesHistory.java
RepositoryWithPerPartesHistory
doCreateCache
class RepositoryWithPerPartesHistory extends Repository { private static final long serialVersionUID = -3433255821312805064L; public static final int MAX_CHANGESETS = 128; private static final Logger LOGGER = LoggerFactory.getLogger(RepositoryWithPerPartesHistory.class); /** * Just like for {@lin...
if (!RuntimeEnvironment.getInstance().isHistoryCachePerPartesEnabled()) { LOGGER.log(Level.INFO, "repository {0} supports per partes history cache creation however " + "it is disabled in the configuration. Generating history cache as whole.", this); History history ...
416
442
858
<methods>public final java.lang.String determineBranch() throws java.io.IOException,public final java.lang.String determineCurrentVersion() throws java.io.IOException,public final java.lang.String determineParent() throws java.io.IOException,public static java.lang.String format(java.util.Date) ,public boolean getHisto...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SCCSHistoryParser.java
SCCSHistoryParser
read
class SCCSHistoryParser { static final String SCCS_DIR_NAME = "SCCS"; boolean pass; boolean passRecord; boolean active; int field; boolean sep; StringBuilder sccsRecord = new StringBuilder(128); Reader in; // Record fields private String revision; private Date rdate; p...
int c, d, dt; while ((c = in.read()) != -1) { switch (c) { //NOPMD case 1: d = in.read(); switch (d) { case 'c': case 't': case 'u': d ...
1,200
392
1,592
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SCCSRepository.java
SCCSRepository
annotate
class SCCSRepository extends Repository { private static final Logger LOGGER = LoggerFactory.getLogger(SCCSRepository.class); private static final long serialVersionUID = 1L; /** * The property name used to obtain the client command for this repository. */ public static final String CMD_PROP...
Map<String, String> authors = getAuthors(file); ArrayList<String> argv = new ArrayList<>(); ensureCommand(CMD_PROPERTY_KEY, CMD_FALLBACK); argv.add(RepoCommand); argv.add("get"); argv.add("-m"); argv.add("-p"); if (revision != null) { argv.ad...
1,556
214
1,770
<methods>public final java.lang.String determineBranch() throws java.io.IOException,public final java.lang.String determineCurrentVersion() throws java.io.IOException,public final java.lang.String determineParent() throws java.io.IOException,public static java.lang.String format(java.util.Date) ,public boolean getHisto...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SCCSRepositoryAnnotationParser.java
SCCSRepositoryAnnotationParser
processStream
class SCCSRepositoryAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(SCCSRepositoryAnnotationParser.class); /** * Store annotation created by {@link #processStream(InputStream)}. */ private final Annotation annotation; private ...
try (BufferedReader in = new BufferedReader(new InputStreamReader(input))) { String line; int lineno = 0; while ((line = in.readLine()) != null) { ++lineno; Matcher matcher = ANNOTATION_PATTERN.matcher(line); if (matcher.find()...
285
212
497
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SCCSRepositoryAuthorParser.java
SCCSRepositoryAuthorParser
processStream
class SCCSRepositoryAuthorParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(SCCSRepositoryAuthorParser.class); private final Map<String, String> authors = new HashMap<>(); /** * Pattern used to extract revision from the {@code sccs get} command. ...
try (BufferedReader in = new BufferedReader( new InputStreamReader(input))) { String line; int lineno = 0; while ((line = in.readLine()) != null) { ++lineno; Matcher matcher = AUTHOR_PATTERN.matcher(line); i...
192
180
372
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SCCSget.java
SCCSget
getRevision
class SCCSget { public static InputStream getRevision(String command, File file, String revision) throws IOException {<FILL_FUNCTION_BODY>} private SCCSget() { } }
InputStream ret = null; ArrayList<String> argv = new ArrayList<>(); argv.add(command); argv.add("get"); argv.add("-p"); if (revision != null) { argv.add("-r" + revision); } argv.add(file.getCanonicalPath()); Executor executor = new Ex...
57
140
197
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SSCMHistoryParser.java
SSCMHistoryParser
processStream
class SSCMHistoryParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(SSCMHistoryParser.class); private final SSCMRepository repository; SSCMHistoryParser(SSCMRepository repository) { this.repository = repository; } private static final ...
history = new History(); BufferedReader in = new BufferedReader(new InputStreamReader(input)); StringBuilder total = new StringBuilder(input.available()); String line; while ((line = in.readLine()) != null) { total.append(line).append(NEWLINE); } Ar...
775
719
1,494
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SubversionAnnotationParser.java
SubversionAnnotationParser
processStream
class SubversionAnnotationParser implements Executor.StreamHandler { private static final Logger LOGGER = LoggerFactory.getLogger(SubversionAnnotationParser.class); /** * Store annotation created by processStream. */ private final Annotation annotation; private final String fileName; /*...
SAXParserFactory factory = SAXParserFactory.newInstance(); SAXParser saxParser; try { saxParser = factory.newSAXParser(); saxParser.setProperty(XMLConstants.ACCESS_EXTERNAL_DTD, ""); // Compliant saxParser.setProperty(XMLConstants.ACCESS_EXTERNAL_SCHEMA, "");...
501
224
725
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/SubversionHistoryParser.java
Handler
initSaxParser
class Handler extends DefaultHandler2 { private static final String COPYFROM_PATH = "copyfrom-path"; /** * Example of the longest date format that we should accept - SimpleDateFormat cannot cope with micro/nano seconds. */ static final int SVN_MILLIS_DATE_LENGTH = "2020-03-26...
SAXParserFactory factory = SAXParserFactory.newInstance(); saxParser = null; try { saxParser = factory.newSAXParser(); saxParser.setProperty(XMLConstants.ACCESS_EXTERNAL_DTD, ""); // Compliant saxParser.setProperty(XMLConstants.ACCESS_EXTERNAL_SCHEMA, ""); //...
1,248
127
1,375
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/history/TagEntry.java
TagEntry
compareTo
class TagEntry implements Comparable<TagEntry> { private static final String DATE_NULL_ASSERT = "date == null"; /** * If repo uses linear revision numbering. */ protected final int revision; /** * If repo does not use linear numbering. */ protected final Date date; /** ...
if (this == that) { return 0; } if (this.revision != NOREV) { return Integer.compare(this.revision, that.revision); } assert this.date != null : DATE_NULL_ASSERT; return this.date.compareTo(that.date);
798
89
887
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/DefaultIndexChangedListener.java
DefaultIndexChangedListener
fileAdded
class DefaultIndexChangedListener implements IndexChangedListener { private static final Logger LOGGER = LoggerFactory.getLogger(DefaultIndexChangedListener.class); private final Map<String, Statistics> statMap = new ConcurrentHashMap<>(); @Override public void fileAdd(String path, String analyzer) {...
Statistics stat = statMap.get(path); if (stat != null) { boolean loggingDone = stat.report(LOGGER, Level.FINEST, String.format("Added: '%s' (%s)", path, analyzer), "indexer.file.add.latency"); statMap.remove(path, stat); // The report() updated t...
269
201
470
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexAnalysisSettings.java
IndexAnalysisSettings
readObject
class IndexAnalysisSettings implements Serializable { private static final long serialVersionUID = 1172403004716059609L; private static final ObjectInputFilter serialFilter = new WhitelistObjectInputFilter(IndexAnalysisSettings.class); private String projectName; /** * Nullable to allow easing ...
boolean hasValue = in.readBoolean(); String vstring = in.readUTF(); projectName = hasValue ? vstring : null; hasValue = in.readBoolean(); int vint = in.readInt(); tabSize = hasValue ? vint : null; hasValue = in.readBoolean(); long vlong = in.readLong()...
1,330
238
1,568
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexAnalysisSettingsAccessor.java
IndexAnalysisSettingsAccessor
read
class IndexAnalysisSettingsAccessor { /** * The {@link QueryBuilder}-normalized value for UUID 58859C75-F941-42E5-8D1A-FAF71DDEBBA7. */ static final String INDEX_ANALYSIS_SETTINGS_OBJUID = "uthuslvotkgltggqqjmurqojpjpjjkutkujktnkk"; private static final int INDEX_ANALYSIS_SETTINGS_OBJVER = 3; ...
IndexSearcher searcher = RuntimeEnvironment.getInstance().getIndexSearcherFactory().newSearcher(reader); Query q; try { q = new QueryParser(QueryBuilder.OBJUID, new CompatibleAnalyser()). parse(INDEX_ANALYSIS_SETTINGS_OBJUID); } catch (ParseException ex) { ...
813
370
1,183
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexAnalysisSettingsUpgrader.java
IndexAnalysisSettingsUpgrader
convertFromV2
class IndexAnalysisSettingsUpgrader { /** * De-serialize the specified {@code bytes}, and upgrade if necessary from * an older version to the current object version which is * {@link IndexAnalysisSettings3}. * @param bytes a defined instance * @param objectVersion a value greater than or e...
IndexAnalysisSettings3 res = new IndexAnalysisSettings3(); res.setAnalyzerGuruVersion(old2.getAnalyzerGuruVersion()); res.setAnalyzersVersions(old2.getAnalyzersVersions()); res.setProjectName(old2.getProjectName()); res.setTabSize(old2.getTabSize()); // Version 2 has no ...
295
113
408
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexDocumentException.java
IndexDocumentException
toString
class IndexDocumentException extends IndexCheckException { private static final long serialVersionUID = -277429315137557112L; private final Map<Path, Integer> duplicatePathMap; private final Set<Path> missingPaths; public IndexDocumentException(String s, Path path) { super(s, path); th...
StringBuilder stringBuilder = new StringBuilder(); stringBuilder.append(getMessage()); stringBuilder.append(":"); if (!duplicatePathMap.isEmpty()) { stringBuilder.append(" duplicate paths = "); stringBuilder.append(duplicatePathMap); } if (!missin...
215
116
331
<methods>public void <init>(java.lang.String, java.nio.file.Path) ,public void <init>(java.lang.String, Set<java.nio.file.Path>) ,public void <init>(java.lang.Exception) ,public Set<java.nio.file.Path> getFailedPaths() <variables>private final Set<java.nio.file.Path> failedPaths,private static final long serialVersionU...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexVersionException.java
IndexVersionException
toString
class IndexVersionException extends IndexCheckException { private static final long serialVersionUID = 5693446916108385595L; private final int luceneIndexVersion; private final int indexVersion; public IndexVersionException(String message, Path path, int luceneIndexVersion, int indexVersion) { ...
return getMessage() + ": " + String.format("Lucene version = %d", luceneIndexVersion) + ", " + String.format("index version = %d", indexVersion);
148
49
197
<methods>public void <init>(java.lang.String, java.nio.file.Path) ,public void <init>(java.lang.String, Set<java.nio.file.Path>) ,public void <init>(java.lang.Exception) ,public Set<java.nio.file.Path> getFailedPaths() <variables>private final Set<java.nio.file.Path> failedPaths,private static final long serialVersionU...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexWriterConfigFactory.java
IndexWriterConfigFactory
get
class IndexWriterConfigFactory { IndexWriterConfigFactory() { } public IndexWriterConfig get() {<FILL_FUNCTION_BODY>} }
RuntimeEnvironment env = RuntimeEnvironment.getInstance(); Analyzer analyzer = AnalyzerGuru.getAnalyzer(); IndexWriterConfig iwc = new IndexWriterConfig(analyzer); iwc.setOpenMode(IndexWriterConfig.OpenMode.CREATE_OR_APPEND); iwc.setRAMBufferSizeMB(env.getRamBufferSize()); ...
43
100
143
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexedSymlink.java
IndexedSymlink
hashCode
class IndexedSymlink { private final String absolute; private final String canonical; private final boolean isLocal; private final String canonicalSeparated; /** * Initializes an instance with the required arguments. * @param absolute a defined instance * @param canonical a defined...
int result = absolute.hashCode(); result = 31 * result + canonical.hashCode(); result = 31 * result + (isLocal ? 1 : 0); return result;
594
51
645
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/IndexerUtil.java
IndexerUtil
enableProjects
class IndexerUtil { private IndexerUtil() { } /** * @return map of HTTP headers to use when making API requests to the web application */ public static MultivaluedMap<String, Object> getWebAppHeaders() { MultivaluedMap<String, Object> headers = new MultivaluedHashMap<>(); Str...
try (Client client = ClientBuilder.newBuilder(). connectTimeout(RuntimeEnvironment.getInstance().getConnectTimeout(), TimeUnit.SECONDS).build()) { final Invocation.Builder request = client.target(host) .path("api") .path("v1") ...
319
230
549
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/NumLinesLOCAccessor.java
NumLinesLOCAccessor
storeBulk
class NumLinesLOCAccessor { private static final int BULK_READ_THRESHOLD = 100; /** * Determines whether there is stored number-of-lines and lines-of-code * in the index associated to the specified {@code reader}. */ public boolean hasStored(IndexReader reader) throws IOException { D...
DSearchResult searchResult = newDSearch(reader, Integer.MAX_VALUE); // Index the existing document IDs by QueryBuilder.D. HashMap<String, Integer> byDir = new HashMap<>(); int intMaximum = Integer.MAX_VALUE < searchResult.hits.totalHits.value ? Integer.MAX_VALUE : (int...
1,761
268
2,029
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/NumLinesLOCAggregator.java
NumLinesLOCAggregator
register
class NumLinesLOCAggregator { private final Object syncRoot = new Object(); private final HashMap<String, DeltaData> registeredDeltas = new HashMap<>(); /** * Gets an iterator over all registered data, explicit and derived, and not * ordered. * @return a defined instance */ public ...
File file = new File(counts.getPath()); File directory = file.getParentFile(); if (directory != null) { synchronized (syncRoot) { do { String dirPath = Util.fixPathIfWindows(directory.getPath()); var extantDelta = registeredDel...
603
162
765
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/NumLinesLOCUtil.java
NumLinesLOCUtil
read
class NumLinesLOCUtil { /** * Reads data, if they exist, from the specified document. * @param doc {@link Document} instance * @return a defined instance */ public static NullableNumLinesLOC read(Document doc) {<FILL_FUNCTION_BODY>} /* private to enforce static */ private NumLinesL...
String path = doc.get(QueryBuilder.D); if (path == null) { path = doc.get(QueryBuilder.PATH); } Long numLines = NumberUtil.tryParseLong(doc.get(QueryBuilder.NUML)); Long loc = NumberUtil.tryParseLong(doc.get(QueryBuilder.LOC)); return new NullableNumLinesLOC(...
102
107
209
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/PendingFileDeletion.java
PendingFileDeletion
equals
class PendingFileDeletion { private final String absolutePath; public PendingFileDeletion(String absolutePath) { this.absolutePath = absolutePath; } /** * @return the absolute path */ public String getAbsolutePath() { return absolutePath; } /** * Compares {@...
if (!(o instanceof PendingFileDeletion)) { return false; } PendingFileDeletion other = (PendingFileDeletion) o; return this.absolutePath.equals(other.absolutePath);
194
63
257
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/PendingFileRenaming.java
PendingFileRenaming
equals
class PendingFileRenaming { private final String absolutePath; private final String transientPath; public PendingFileRenaming(String absolutePath, String transientPath) { this.absolutePath = absolutePath; this.transientPath = transientPath; } /** * @return the final, absolute ...
if (!(o instanceof PendingFileRenaming)) { return false; } PendingFileRenaming other = (PendingFileRenaming) o; return this.absolutePath.equals(other.absolutePath);
255
63
318
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/index/PendingSymlinkage.java
PendingSymlinkage
equals
class PendingSymlinkage { private final String sourcePath; private final String targetRelPath; public PendingSymlinkage(String sourcePath, String targetRelPath) { this.sourcePath = sourcePath; this.targetRelPath = targetRelPath; } /** * @return the source, absolute path *...
if (!(o instanceof PendingSymlinkage)) { return false; } PendingSymlinkage other = (PendingSymlinkage) o; return this.sourcePath.equals(other.sourcePath);
254
58
312
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/logger/formatter/LogFormatter.java
LogFormatter
format
class LogFormatter extends Formatter { private static final String DEFAULT_FORMAT = "%1$tb %1$td, %1$tY %1$tl:%1$tM:%1$tS %1$Tp %2$s%n%4$s: %5$s%6$s%n"; private final String format; private final String version; public LogFormatter() { this(DEFAULT_FORMAT, "unknown"); } public LogFor...
Date dat = new Date(logRecord.getMillis()); StringBuilder source = new StringBuilder(); if (logRecord.getSourceClassName() != null) { source.append(logRecord.getSourceClassName()); if (logRecord.getSourceMethodName() != null) { source.append(' ').append(l...
225
383
608
<methods>public abstract java.lang.String format(java.util.logging.LogRecord) ,public java.lang.String formatMessage(java.util.logging.LogRecord) ,public java.lang.String getHead(java.util.logging.Handler) ,public java.lang.String getTail(java.util.logging.Handler) <variables>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/CustomQueryParser.java
CustomQueryParser
isCaseSensitive
class CustomQueryParser extends QueryParser { /** * Create a query parser customized for OpenGrok. * * @param field default field for unqualified query terms */ public CustomQueryParser(String field) { super(field, new CompatibleAnalyser()); setDefaultOperator(AND_OPERATOR);...
// Only definition search and reference search are case sensitive return QueryBuilder.DEFS.equals(field) || QueryBuilder.REFS.equals(field);
860
41
901
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/DirectoryExtraReader.java
DirectoryExtraReader
search
class DirectoryExtraReader { // N.b.: update #search() comment when changing private static final int DIR_LIMIT_NUM = 2000; private static final Logger LOGGER = LoggerFactory.getLogger( DirectoryExtraReader.class); /** * Search for supplemental file information in the specified {@code pa...
if (searcher == null) { throw new IllegalArgumentException("`searcher' is null"); } if (path == null) { throw new IllegalArgumentException("`path' is null"); } QueryBuilder qbuild = new QueryBuilder(); qbuild.setDirPath(path); Query query...
319
271
590
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/Hit.java
Hit
equals
class Hit implements Comparable<Hit> { /** * Holds value of property filename. */ private String filename; /** * Holds value of property directory. */ private String directory; /** * Holds value of property line. */ private String line; /** * Holds value...
if (o instanceof Hit) { return compareTo((Hit) o) == 0; } return false;
1,328
33
1,361
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/SettingsHelper.java
SettingsHelper
getTabSize
class SettingsHelper { private final IndexReader reader; /** * Key is Project name or empty string for null Project. */ private Map<String, IndexAnalysisSettings3> mappedAnalysisSettings; /** * Key is Project name or empty string for null Project. Map is ordered by * canonical len...
String projectName = proj != null ? proj.getName() : null; IndexAnalysisSettings3 settings = getSettings(projectName); int tabSize; if (settings != null && settings.getTabSize() != null) { tabSize = settings.getTabSize(); } else { tabSize = proj != null ?...
907
110
1,017
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/Summarizer.java
Excerpt
getSummary
class Excerpt { List<Summary.Fragment> passages = new ArrayList<>(); Set<String> tokenSet = new TreeSet<>(); int numTerms = 0; public void addToken(String token) { tokenSet.add(token); } /** * Return how many unique tokens we have. */ ...
if (text == null) { return null; } // Simplistic implementation. Finds the first fragments in the document // containing any query terms. // // @TODO: check that phrases in the query are matched in the fragment SToken[] tokens = getTokens(text); ...
357
1,585
1,942
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/Summary.java
Ellipsis
toString
class Ellipsis extends Fragment { /* Constructs an ellipsis fragment for the given text. */ public Ellipsis() { super(" ... "); } /* Returns true. */ @Override public boolean isEllipsis() { return true; } /* Returns an HTML repres...
StringBuilder buffer = new StringBuilder(); for (Fragment fragment : fragments) { buffer.append(fragment); } return buffer.toString();
295
41
336
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/TermEscaperBase.java
TermEscaperBase
consume
class TermEscaperBase { private StringBuilder out; /** * "Runs the scanner [as documented by JFlex]. * <p>[The method] can be used to get the next token from the input." * <p>"Consume[s] input until one of the expressions in the specification * is matched or an error occurs." * @retur...
try { while (yylex()) { continue; } } catch (IOException ex) { // cannot get here with StringBuilder operations }
324
45
369
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/FormattedLines.java
FormattedLines
merge
class FormattedLines { private final SortedMap<Integer, String> lines = new TreeMap<>(); private String footer; private boolean limited; /* * Gets a count of the number of lines in the instance. */ public int getCount() { return lines.size(); } /** * @return the foot...
FormattedLines res = new FormattedLines(); res.lines.putAll(this.lines); for (Map.Entry<Integer, String> kv : other.lines.entrySet()) { res.lines.putIfAbsent(kv.getKey(), kv.getValue()); } res.setFooter(this.footer != null ? this.footer : other.footer); res....
655
124
779
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/LineHighlight.java
LineHighlight
condenseMarkups
class LineHighlight { private final int lineno; private List<PhraseHighlight> markups; /** Offset of elided left part. */ private int lelide; /** Offset of elide right part. */ private int relide; private boolean didLelide; private boolean didRelide; public LineHighlight(int linen...
if (markups == null) { return; } markups.sort(PhraseHighlightComparator.INSTANCE); // Condense instances if there is overlap. for (int i = 0; i + 1 < markups.size(); ++i) { PhraseHighlight phi0 = markups.get(i); PhraseHighlight phi1 = markups...
1,180
173
1,353
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/LineMatcher.java
LineMatcher
compareStrings
class LineMatcher { // Line Matcher States public static final int NOT_MATCHED = 0; public static final int MATCHED = 1; public static final int WAIT = 2; /** * Tells whether the matching should be done in a case-insensitive manner. */ private final boolean caseInsensitive; /** ...
if (s1 == null) { return s2 == null ? 0 : -1; } else if (caseInsensitive) { return s1.compareToIgnoreCase(s2); } else { return s1.compareTo(s2); }
473
72
545
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/OGPassageScorer.java
OGPassageScorer
score
class OGPassageScorer extends PassageScorer { private static final Logger LOGGER = LoggerFactory.getLogger(OGPassageScorer.class); public OGPassageScorer() { // Use non-default values so that the scorer object is easier to identify when debugging. super(1, 2, 3); } @Override publi...
LOGGER.log(Level.FINEST, "{0} -> {1}", new Object[]{passage, passage.getStartOffset()}); return -passage.getStartOffset();
124
50
174
<no_super_class>