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38.4k
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/PhraseHighlight.java
PhraseHighlight
merge
class PhraseHighlight { /** * a value that has been translated from start offset w.r.t. document * start to a value w.r.t. line start -- or -1 if not beginning this * line */ private final int lineStart; /** * a value that has been translated from start offset w.r.t. document ...
int mergeStart = Math.min(lineStart, other.lineStart); int mergeEnd = Math.max(lineEnd, other.lineEnd); return PhraseHighlight.create(mergeStart, mergeEnd);
714
55
769
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/PhraseHighlightComparator.java
PhraseHighlightComparator
compare
class PhraseHighlightComparator implements Comparator<PhraseHighlight> { public static final PhraseHighlightComparator INSTANCE = new PhraseHighlightComparator(); /** * Compares two {@link PhraseHighlight} instances for order by first * comparing using {@link Integer#compare(int, int)} the * {@...
int cmp; if (o1.getLineStart() < 0) { if (o2.getLineStart() >= 0) { return -1; } cmp = 0; } else if (o2.getLineStart() < 0) { return 1; } else { cmp = Integer.compare(o1.getLineStart(), o2.getLineStart()); ...
321
158
479
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/PhraseMatcher.java
PhraseMatcher
match
class PhraseMatcher extends LineMatcher { private final String[] phraseTerms; private int cur; PhraseMatcher(String[] phraseTerms, boolean caseInsensitive) { super(caseInsensitive); this.phraseTerms = phraseTerms.clone(); cur = 0; } @Override public int match(String to...
if (equal(token, phraseTerms[cur])) { if (cur < phraseTerms.length - 1) { cur++; return WAIT; //matching. } cur = 0; return MATCHED; //matched! } else if (cur > 0) { cur = 0; if (equal(token, phraseT...
107
131
238
<methods>public abstract int match(java.lang.String) <variables>public static final int MATCHED,public static final int NOT_MATCHED,public static final int WAIT,private final non-sealed boolean caseInsensitive
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/PrefixMatcher.java
PrefixMatcher
match
class PrefixMatcher extends LineMatcher { private final String prefix; public PrefixMatcher(String prefix, boolean caseInsensitive) { super(caseInsensitive); this.prefix = normalizeString(prefix); } @Override public int match(String token) {<FILL_FUNCTION_BODY>} }
String tokenToMatch = normalizeString(token); return tokenToMatch.startsWith(prefix) ? MATCHED : NOT_MATCHED;
88
40
128
<methods>public abstract int match(java.lang.String) <variables>public static final int MATCHED,public static final int NOT_MATCHED,public static final int WAIT,private final non-sealed boolean caseInsensitive
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/QueryMatchers.java
QueryMatchers
getWildTerm
class QueryMatchers { private Set<String> caseSensitiveTerms; private Set<String> caseInsensitiveTerms; private List<LineMatcher> matchers; private Map<String, Boolean> fields; /** * Get the terms from a query and returns a list of DFAs which match a stream * of tokens. * * @pa...
Term term = query.getTerm(); if (useTerm(term)) { matchers.add( new WildCardMatcher(term.text(), isCaseInsensitive(term))); }
1,186
52
1,238
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/RegexpMatcher.java
RegexpMatcher
match
class RegexpMatcher extends LineMatcher { private static final Logger LOGGER = LoggerFactory.getLogger(RegexpMatcher.class); private final Pattern termRegexp; RegexpMatcher(String term, boolean caseInsensitive) { super(caseInsensitive); Pattern regexp; try { regexp = P...
return (termRegexp != null && termRegexp.matcher(line).matches()) ? MATCHED : NOT_MATCHED;
212
39
251
<methods>public abstract int match(java.lang.String) <variables>public static final int MATCHED,public static final int NOT_MATCHED,public static final int WAIT,private final non-sealed boolean caseInsensitive
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/StrictLineBreakIterator.java
StrictLineBreakIterator
next
class StrictLineBreakIterator extends BreakIterator { private final List<Integer> breaks = new ArrayList<>(); private char peekChar = CharacterIterator.DONE; private CharacterIterator charIt; private int breakOffset = -1; public StrictLineBreakIterator() { charIt = new StringCharacterItera...
if (breakOffset + 1 < breaks.size()) { return breaks.get(++breakOffset); } char lastChar = CharacterIterator.DONE; int charOff; while (true) { char nextChar; if (peekChar != CharacterIterator.DONE) { nextChar = peekChar; ...
809
407
1,216
<methods>public java.lang.Object clone() ,public abstract int current() ,public abstract int first() ,public abstract int following(int) ,public static synchronized java.util.Locale[] getAvailableLocales() ,public static java.text.BreakIterator getCharacterInstance() ,public static java.text.BreakIterator getCharacterI...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/search/context/WildCardMatcher.java
WildCardMatcher
wildcardEquals
class WildCardMatcher extends LineMatcher { final String pattern; public WildCardMatcher(String pattern, boolean caseInsensitive) { super(caseInsensitive); this.pattern = normalizeString(pattern); } @Override public int match(String token) { String tokenToMatch = normalize...
int p = patternIdx; for (int s = stringIdx;; ++p, ++s) { // End of string yet? boolean sEnd = (s >= string.length()); // End of pattern yet? boolean pEnd = (p >= pattern.length()); // If we're looking at the end of the string... ...
532
663
1,195
<methods>public abstract int match(java.lang.String) <variables>public static final int MATCHED,public static final int NOT_MATCHED,public static final int WAIT,private final non-sealed boolean caseInsensitive
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/AbstractObjectPool.java
AbstractObjectPool
release
class AbstractObjectPool<T> implements ObjectPool<T> { /** * Returns the object to the pool. * The method first validates the object if it is * re-usable and then puts returns it to the pool. * * If the object validation fails, * {@link #handleInvalidReturn(java.lang.Object)} is calle...
if (isValid(t)) { returnToPool(t); } else { handleInvalidReturn(t); }
199
37
236
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/BoundedBlockingObjectPool.java
BoundedBlockingObjectPool
handleInvalidReturn
class BoundedBlockingObjectPool<T> extends AbstractObjectPool<T> implements BlockingObjectPool<T> { private static final Logger LOGGER = LoggerFactory.getLogger( BoundedBlockingObjectPool.class); private final int size; private final LinkedBlockingDeque<T> objects; private final Object...
if (LOGGER.isLoggable(Level.FINE)) { LOGGER.log(Level.FINE, "createNew() to handle invalid {0}", t.getClass()); } t = objectFactory.createNew(); executor.submit(new ObjectReturner<>(objects, t, puttingLast));
1,013
85
1,098
<methods>public non-sealed void <init>() ,public final void release(T) <variables>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/CloseableReentrantReadWriteLock.java
CloseableReentrantReadWriteLock
readLockAsResource
class CloseableReentrantReadWriteLock extends ReentrantReadWriteLock { private static final long serialVersionUID = 95L; private transient ResourceLock readUnlocker = newReadUnlocker(); private transient ResourceLock writeUnlocker = newWriteUnlocker(); /** * @return a defined {@link ResourceLoc...
/* * A subclass of ReentrantReadWriteLock is forced to be serializable, so * we would have to handle where serialization can short-circuit field * initialization above and leave the instance's fields null. * Consequently, the fields cannot be final. They are encapsulating ...
411
180
591
<methods>public void <init>() ,public void <init>(boolean) ,public final int getQueueLength() ,public int getReadHoldCount() ,public int getReadLockCount() ,public int getWaitQueueLength(java.util.concurrent.locks.Condition) ,public int getWriteHoldCount() ,public final boolean hasQueuedThread(java.lang.Thread) ,public...
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/ColorUtil.java
ColorUtil
fromHex
class ColorUtil { private ColorUtil() { } /** * Return Color object from string. The following formats are allowed: * {@code A1B2C3}, * {@code abc123} * * @param str hex string * @return Color object */ public static Color fromHex(String str) {<FILL_FUNCTION_BODY>} ...
if (str.length() != 6) { throw new IllegalArgumentException("unsupported length:" + str); } return new Color(parseHexNumber(str, 0), parseHexNumber(str, 2), parseHexNumber(str, 4));
297
70
367
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/CtagsUtil.java
CtagsUtil
canProcessFiles
class CtagsUtil { private static final Logger LOGGER = LoggerFactory.getLogger(CtagsUtil.class); public static final String SYSTEM_CTAGS_PROPERTY = "org.opengrok.indexer.analysis.Ctags"; /** Private to enforce static. */ private CtagsUtil() { } /** * Check that {@code ctags} program exi...
Path inputPath; try { inputPath = File.createTempFile("ctagsValidation", ".c", baseDir).toPath(); } catch (IOException e) { LOGGER.log(Level.WARNING, "cannot create temporary file in ''{0}''", baseDir); return false; } final String resourceFil...
1,313
445
1,758
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/ErrorMessageCollector.java
ErrorMessageCollector
finisher
class ErrorMessageCollector implements Collector<String, StringJoiner, Optional<String>> { private final String prefix; private final String emptyString; private final boolean returnNullWhenEmpty; /** * Creates a collector with given prefix and * returns optional empty for empty collection. ...
return stringJoiner -> Optional.of(stringJoiner.toString()) .filter(msg -> !(msg.isEmpty() && returnNullWhenEmpty));
792
44
836
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/Executor.java
SpoolHandler
processStream
class SpoolHandler implements StreamHandler { private final ByteArrayOutputStream bytes = new ByteArrayOutputStream(); public byte[] getBytes() { return bytes.toByteArray(); } @Override public void processStream(InputStream input) throws IOException {<FILL_FUNCTION...
BufferedInputStream in = new BufferedInputStream(input); byte[] buffer = new byte[8092]; int len; while ((len = in.read(buffer)) != -1) { if (len > 0) { bytes.write(buffer, 0, len); } }
79
85
164
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/FileExtraZipper.java
FileExtraZipper
zip
class FileExtraZipper { /** * Merge the specified lists by looking up a possible entry in * {@code extras} for every element in {@code entries}. * * @param entries list of {@link DirectoryEntry} instances * @param extras some OpenGrok-analyzed extra metadata */ public void zip(Li...
if (extras == null) { return; } Map<String, NullableNumLinesLOC> byName = indexExtraByName(extras); for (DirectoryEntry entry : entries) { NullableNumLinesLOC extra = findExtra(byName, entry.getFile()); entry.setExtra(extra); }
305
91
396
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/Getopt.java
Option
parse
class Option { char optOption; String argument; } private final List<Option> options; private int current; private int optind; private final String[] argv; private final String opts; /** * Creates a new instance of Getopt. * @param argv argument vector * @par...
int ii = 0; while (ii < argv.length) { char[] chars = argv[ii].toCharArray(); if (chars.length > 0 && chars[0] == '-') { if (argv[ii].equals("--")) { // End of command line options ;) optind = ii + 1; b...
211
413
624
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/HeadHandler.java
HeadHandler
processStream
class HeadHandler implements Executor.StreamHandler { private final int maxLines; private final List<String> lines = new ArrayList<>(); private final Charset charset; private static final int BUFFERED_READER_SIZE = 200; /** * Charset of the underlying reader is set to UTF-8. * @param ma...
try (BufferedInputStream bufStream = new BufferedInputStream(input); BufferedReader reader = new BufferedReader(new InputStreamReader(bufStream, this.charset), BUFFERED_READER_SIZE)) { int lineNum = 0; while (lineNum < maxLines) { String line = re...
366
173
539
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/HostUtil.java
HostUtil
isReachable
class HostUtil { private static final Logger LOGGER = LoggerFactory.getLogger(HostUtil.class); private HostUtil() { // private to enforce static } /** * @param urlStr URI * @return port number * @throws URISyntaxException on error */ public static int urlToPort(String ...
boolean connectWorks = false; try { int port = HostUtil.urlToPort(webappURI); if (port <= 0) { LOGGER.log(Level.SEVERE, () -> "invalid port number for " + webappURI); return false; } return isWebAppReachable(webappURI, ti...
679
150
829
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/LazilyInstantiate.java
LazilyInstantiate
swapper
class LazilyInstantiate<T> implements Supplier<T> { private final Supplier<T> supplier; private Supplier<T> current; private volatile boolean active; public static <T> LazilyInstantiate<T> using(Supplier<T> supplier) { return new LazilyInstantiate<>(supplier); } /** * Executes th...
if (!(current instanceof Factory)) { T obj = supplier.get(); current = new Factory<>(obj); active = true; } return current.get();
399
48
447
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/LineBreaker.java
LineBreaker
reset
class LineBreaker { private static final String RESET_FAILED_MSG = "reset() did not succeed"; private int length; private int count; private int[] lineOffsets; /** * Calls * {@link #reset(org.opengrok.indexer.analysis.StreamSource, org.opengrok.indexer.util.ReaderWrapper)} * with {...
length = 0; lineOffsets = null; List<Long> newOffsets = new ArrayList<>(); LineBreakerScanner scanner = new LineBreakerScanner(reader); scanner.setTarget(newOffsets); scanner.consume(); long fullLength = scanner.getLength(); /* * Lucene cannot g...
727
343
1,070
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/NumberUtil.java
NumberUtil
tryParseLong
class NumberUtil { /** * Parses the specified {@code value} without throwing a checked exception. */ public static Long tryParseLong(String value) {<FILL_FUNCTION_BODY>} /* private to enforce static */ private NumberUtil() { } }
if (value == null) { return null; } try { return Long.parseLong(value); } catch (NumberFormatException e) { return null; }
75
53
128
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/PathUtils.java
PathUtils
getRelativeToCanonical
class PathUtils { private static final Logger LOGGER = LoggerFactory.getLogger(PathUtils.class); /** * Calls {@link #getRelativeToCanonical(Path, Path, Set, Set)} * with {@code path}, {@code canonical}, {@code allowedSymlinks=null}, and * {@code canonicalRoots=null} (to disable validatio...
if (path.equals(canonical)) { return ""; } // The following fixup of \\ is really to allow // IndexDatabaseTest.testGetDefinitions() to succeed on Linux or macOS. // That test has an assertion that operation is the "same for windows // delimiters" and passe...
1,205
696
1,901
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/Progress.java
Progress
logIt
class Progress implements AutoCloseable { private final Logger logger; private final Long totalCount; private final String suffix; private final AtomicLong currentCount = new AtomicLong(); private final Map<Level, Integer> levelCountMap = new TreeMap<>(Comparator.comparingInt(Level::intValue).rever...
if (logger.isLoggable(currentLevel)) { lastLoggedChunk.put(currentLevel, currentCount / levelCountMap.get(currentLevel)); StringBuilder stringBuilder = new StringBuilder(); stringBuilder.append("Progress: "); stringBuilder.append(currentCount); string...
1,465
170
1,635
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/RainbowColorGenerator.java
RainbowColorGenerator
generateLinearColorSequence
class RainbowColorGenerator { private static final int COLORS_BETWEEN_ANCHORS = 4; private static final Color[] STOP_COLORS = new Color[]{ fromHex("eaffe2"), fromHex("d9e4f9"), fromHex("d1d1d1"), fromHex("fffbcf"), fromHex("ffbfc3"), }; priva...
assert colorsBetweenAnchors >= 0; if (anchorColors.size() == 1) { return Collections.singletonList(anchorColors.get(0)); } int segmentCount = anchorColors.size() - 1; List<Color> result = new ArrayList<>(anchorColors.size() + segmentCount * colorsBetweenAnchors); ...
719
235
954
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/SourceSplitter.java
SourceSplitter
reset
class SourceSplitter { private static final String RESET_FAILED_MSG = "reset() did not succeed"; private int length; private String[] lines; private int[] lineOffsets; /** * Gets the number of characters in the original source document. */ public int originalLength() { retur...
if (src == null) { throw new IllegalArgumentException("`src' is null"); } SplitterUtil.reset(this::reset, src, wrapper);
1,259
46
1,305
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/SplitterUtil.java
SplitterUtil
reset
class SplitterUtil { @FunctionalInterface interface Resetter { void reset(Reader reader) throws IOException; } /** * Find the line index for the specified document offset. * @param offset greater than or equal to zero and less than * {@code length}. * @return -1 if {@code o...
if (src == null) { throw new IllegalArgumentException("src is null"); } try (InputStream in = src.getStream(); Reader rdr = IOUtils.createBOMStrippedReader(in, StandardCharsets.UTF_8.name())) { Reader intermediate = null; if (wrapper != null) { ...
483
171
654
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/Statistics.java
Statistics
logIt
class Statistics { private final Instant startTime; public Statistics() { startTime = Instant.now(); } /** * Log a message with duration using provided logger if the supplied log level is active. * @param logger logger instance * @param logLevel log level * @param msg message ...
if (logger.isLoggable(logLevel)) { String timeStr = StringUtils.getReadableTime(duration.toMillis()); logger.log(logLevel, String.format("%s (took %s)", launderLog(msg), timeStr)); return true; } return false;
859
80
939
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/TandemFilename.java
TandemFilename
maybePackSha
class TandemFilename { private static final int MAX_BYTES = 255; /** * One fewer than {@link #MAX_BYTES} as a cap for simple concatenation to * avoid the possibility of easily fabricating a collision against this * algorithm. I.e., a 255 byte tandem filename will always include a * compute...
byte[] uFilename = filename.getBytes(StandardCharsets.UTF_8); int nBytes = uFilename.length; if (nBytes + asciiExtension.length() <= MAX_CAT_BYTES) { // Here the UTF-8 encoding already allows for the new extension. return filename + asciiExtension; } /*...
812
685
1,497
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/TandemPath.java
TandemPath
join
class TandemPath { /** Private to enforce static. */ private TandemPath() { } /** * Appends an ASCII extension to the specified {@code filePath}, truncating * and packing in a SHA-256 hash if the UTF-8 encoding of the filename * component of the path would exceed 254 bytes and arriving ...
File file = new File(filePath); String newName = TandemFilename.join(file.getName(), asciiExtension); File newFile = new File(file.getParent(), newName); return newFile.getPath();
258
64
322
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/UriUtils.java
TrimUriResult
trimUri
class TrimUriResult { private final String uri; private final int pushBackCount; TrimUriResult(String uri, int pushBackCount) { this.uri = uri; this.pushBackCount = pushBackCount; } public String getUri() { return uri; } publ...
int n = 0; while (true) { /* * An ending-pushback could be present before a collateral capture, * so detect both in a loop (on a shrinking `url') until no more * shrinking should occur. */ int subN = 0; if (should...
344
241
585
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/Version.java
Version
compareTo
class Version implements Comparable<Version> { private final Integer[] versions; /** * Construct the version from integer parts. * The order is: * <ol> * <li>major</li> * <li>minor</li> * <li>patch</li> * <li>... others</li> * </ol> * * @param parts integer val...
if (o == null) { return 1; } // first different number determines the result for (int i = 0; i < Math.min(versions.length, o.versions.length); i++) { if (!versions[i].equals(o.versions[i])) { return Integer.compare(versions[i], o.versions[i]); ...
504
173
677
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/util/WhitelistObjectInputFilter.java
WhitelistObjectInputFilter
checkInput
class WhitelistObjectInputFilter implements ObjectInputFilter { private final Set<Class<?>> whitelist; public WhitelistObjectInputFilter(@NotNull final Class<?>... whitelist) { this.whitelist = Set.of(whitelist); } @Override public Status checkInput(final FilterInfo filterInfo) {<FILL_FUN...
if (filterInfo.serialClass() == null || whitelist.contains(filterInfo.serialClass())) { return Status.ALLOWED; } return Status.REJECTED;
105
50
155
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/ApiUtils.java
ApiUtils
waitForAsyncApi
class ApiUtils { private static final Logger LOGGER = LoggerFactory.getLogger(ApiUtils.class); private static final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); private ApiUtils() { // utility class } /** * Busy waits for API call to complete by repeatedly querying the...
if (response.getStatus() != Response.Status.ACCEPTED.getStatusCode()) { LOGGER.log(Level.WARNING, "API request not accepted: {0}", response); return response; } String location = response.getHeaderString(HttpHeaders.LOCATION); if (location == null) { ...
265
464
729
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/EftarFile.java
Node
write
class Node { private final long hash; private String tag; private final Map<Long, Node> children; private long tagOffset; private long childOffset; Node(long hash, String tag) { this.hash = hash; this.tag = tag; children = new TreeMap...
if (n.tag != null) { out.write(n.tag.getBytes()); offset += n.tag.length(); } for (Node childNode : n.children.values()) { out.writeLong(childNode.hash); if (childNode.children.size() > 0) { out.writeShort((short) (childNode.childO...
326
270
596
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/EftarFileReader.java
FNode
get
class FNode { private final long offset; private long hash; private int childOffset; private int numChildren; private int tagOffset; public FNode() throws IOException { offset = f.getFilePointer(); try { hash = f.readLong(); ...
f.seek(0); FNode n = new FNode(); FNode next; long tagOffset = 0; int tagLength = 0; var tokens = Arrays.stream(path.split("/")) .filter(Objects::nonNull) .filter(tok -> !tok.isEmpty()) .collect(Collectors.toList()); ...
1,165
304
1,469
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/Laundromat.java
Laundromat
launderLog
class Laundromat { private static final String ESC_N_R_T_F = "[\\n\\r\\t\\f]"; private static final String ESG_N_R_T_F_1_N = ESC_N_R_T_F + "+"; /** * Sanitize {@code value} where it will be used in subsequent OpenGrok * (non-logging) processing. * @return {@code null} if null or else {@code...
if (value == null) { return null; } return value.replace("\n", "<LF>"). replace("\r", "<CR>"). replace("\t", "<TAB>"). replace("\f", "<FF>");
909
69
978
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/Suggestion.java
Suggestion
isUsable
class Suggestion { /** index name. */ private final String name; /** freetext search suggestions. */ private String[] freetext; /** references search suggestions. */ private String[] refs; /** definitions search suggestions. */ private String[] defs; /** * Create a new suggest...
return (freetext != null && freetext.length > 0) || (defs != null && defs.length > 0) || (refs != null && refs.length > 0);
334
56
390
<no_super_class>
oracle_opengrok
opengrok/opengrok-indexer/src/main/java/org/opengrok/indexer/web/messages/MessagesUtils.java
TaggedMessagesContainer
messagesToJson
class TaggedMessagesContainer implements JSONable { private final String tag; private final SortedSet<MessagesContainer.AcceptedMessage> messages; TaggedMessagesContainer(String tag, SortedSet<MessagesContainer.AcceptedMessage> messages) { this.tag = tag; this.messages ...
if (Objects.isNull(project)) { return JSONable.EMPTY; } List<String> tags = new ArrayList<>(Arrays.asList(additionalTags)); tags.add(project.getName()); project.getGroups().stream().map(Group::getName).forEach(tags::add); return messagesToJson(tags);
1,112
92
1,204
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/AuthorizationFilter.java
AuthorizationFilter
init
class AuthorizationFilter implements Filter { private static final Logger LOGGER = LoggerFactory.getLogger(AuthorizationFilter.class); @Override public void init(FilterConfig fc) {<FILL_FUNCTION_BODY>} /** * All RESTful API requests are allowed here because they go through * {@link org.open...
// Empty since there is No specific init configuration.
680
16
696
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/CookieFilter.java
CookieFilter
doFilter
class CookieFilter implements Filter { private FilterConfig fc; @Override public void doFilter(ServletRequest req, ServletResponse res, FilterChain chain) throws IOException, ServletException {<FILL_FUNCTION_BODY>} private String getSuffix() { StringBuilder sb = new StringBuilder()...
HttpServletResponse response = (HttpServletResponse) res; chain.doFilter(req, response); // Change the existing cookies to use the attributes and values from the configuration. String cookieName = HttpHeaders.SET_COOKIE; Collection<String> headers = response.getHeaders(cookie...
264
207
471
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/GetFile.java
GetFile
service
class GetFile extends HttpServlet { public static final long serialVersionUID = -1; @Override protected void service(final HttpServletRequest request, final HttpServletResponse response) throws IOException {<FILL_FUNCTION_BODY>} }
PageConfig cfg = PageConfig.get(request); cfg.checkSourceRootExistence(); String redir = cfg.canProcess(); if (redir == null || redir.length() > 0) { if (redir != null) { response.sendRedirect(redir); } else { response.sendError(H...
62
561
623
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/ResponseHeaderFilter.java
ResponseHeaderFilter
doFilter
class ResponseHeaderFilter implements Filter { FilterConfig fc; @Override public void doFilter(ServletRequest req, ServletResponse res, FilterChain chain) throws IOException, ServletException {<FILL_FUNCTION_BODY>} @Override public void init(FilterConfig filterConfig) { thi...
HttpServletResponse response = (HttpServletResponse) res; // set the provided HTTP response parameters for (Enumeration<String> e = fc.getInitParameterNames(); e.hasMoreElements();) { String headerName = e.nextElement(); if (!response.containsHeader(headerName)) { ...
117
127
244
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/Scripts.java
FileScript
toHtml
class FileScript extends Script { public FileScript(String script, int priority) { super(script, priority); } @Override public String toHtml() {<FILL_FUNCTION_BODY>} }
return "\t<script type=\"text/javascript\" src=\"" + this.getScriptData() + "\" data-priority=\"" + this.getPriority() + "\"></script>\n";
61
62
123
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/StatisticsFilter.java
StatisticsFilter
measure
class StatisticsFilter implements Filter { static final String REQUESTS_METRIC = "requests"; private static final String CATEGORY_TAG = "category"; private final DistributionSummary requests = Metrics.getPrometheusRegistry().summary(REQUESTS_METRIC); @Override public void init(FilterConfig fc) th...
String category; category = getCategory(httpReq, config); Timer categoryTimer = Timer.builder("requests.latency"). tags(CATEGORY_TAG, category, "code", String.valueOf(httpResponse.getStatus())). register(Metrics.getPrometheusRegistry()); categoryTimer.re...
543
268
811
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/WebappListener.java
WebappListener
indexCheck
class WebappListener implements ServletContextListener, ServletRequestListener { private static final Logger LOGGER = LoggerFactory.getLogger(WebappListener.class); private final Timer startupTimer = Timer.builder("webapp.startup.latency"). description("web application startup latency"). ...
try (IndexCheck indexCheck = new IndexCheck(Configuration.read(new File(configPath)))) { indexCheck.check(IndexCheck.IndexCheckMode.VERSION); } catch (IOException e) { LOGGER.log(Level.WARNING, "could not perform index check", e); } catch (IndexCheckException e) { ...
1,302
225
1,527
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/ApiTask.java
ApiTask
getResponse
class ApiTask { private static final Logger LOGGER = LoggerFactory.getLogger(ApiTask.class); private final Callable<Object> callable; enum ApiTaskState { INITIAL, SUBMITTED, COMPLETED, } private ApiTaskState state; private final UUID uuid; private final String pat...
// Avoid thread being blocked in future.get() below. if (!isDone()) { throw new IllegalStateException(String.format("task %s not yet done", this)); } Object obj; try { obj = future.get(); } catch (InterruptedException ex) { return Res...
1,247
199
1,446
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/ApiTaskManager.java
ApiTaskManager
shutdown
class ApiTaskManager { private static final Logger LOGGER = LoggerFactory.getLogger(ApiTaskManager.class); private final Map<String, ExecutorService> queues = new ConcurrentHashMap<>(); // queue name -> ExecutorService private final Map<UUID, ApiTask> apiTasks = new ConcurrentHashMap<>(); // UUID -> ApiTa...
for (ExecutorService executorService : queues.values()) { executorService.shutdown(); } for (Map.Entry<String, ExecutorService> entry : queues.entrySet()) { boolean shutdownResult = entry.getValue().awaitTermination(60, TimeUnit.SECONDS); if (!shutdownResult...
954
129
1,083
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/error/GenericExceptionMapper.java
GenericExceptionMapper
toResponse
class GenericExceptionMapper implements ExceptionMapper<Exception> { private static final Logger logger = LoggerFactory.getLogger(GenericExceptionMapper.class); @Override public Response toResponse(final Exception e) {<FILL_FUNCTION_BODY>} }
logger.log(Level.WARNING, "Exception while processing request", e); return ExceptionMapperUtils.toResponse(Response.Status.INTERNAL_SERVER_ERROR, e);
68
46
114
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/AnnotationController.java
AnnotationDTO
getContent
class AnnotationDTO { @JsonProperty private String revision; @JsonProperty private String author; @JsonProperty private String description; @JsonProperty private String version; // for testing AnnotationDTO() { } Annotatio...
File file = toFile(path); Annotation annotation = HistoryGuru.getInstance().annotate(file, revision == null || revision.isEmpty() ? null : revision); ArrayList<AnnotationDTO> annotationList = new ArrayList<>(); for (int i = 1; i <= annotation.size(); i++) { ...
331
166
497
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/ConfigurationController.java
ConfigurationController
getConfigurationValueException
class ConfigurationController { private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); public static final String PATH = "configuration"; private final SuggesterService suggesterService; @Inject public ConfigurationController(SuggesterService suggesterService) { this.su...
final IOException[] capture = new IOException[1]; final int IOE_INDEX = 0; Object result = env.syncReadConfiguration(configuration -> { try { return ClassUtil.getFieldValue(configuration, fieldName); } catch (IOException ex) { capture[IOE_...
807
142
949
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/DirectoryListingController.java
DirectoryEntryDTO
equals
class DirectoryEntryDTO implements JSONable { @JsonProperty String path; @JsonProperty Long numLines; @JsonProperty Long loc; @JsonProperty Date date; @JsonProperty String description; @JsonProperty String pathDescription; ...
return Optional.ofNullable(obj) .filter(other -> getClass() == other.getClass()) .map(DirectoryEntryDTO.class::cast) .filter(other -> Objects.equals(this.path, other.path)) .filter(other -> Objects.equals(this.date, other.date)...
461
200
661
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/FileController.java
FileController
transfer
class FileController { public static final String PATH = "file"; private StreamingOutput transfer(File file) throws FileNotFoundException {<FILL_FUNCTION_BODY>} @GET @CorsEnable @PathAuthorized @Path("/content") @Produces(MediaType.TEXT_PLAIN) public StreamingOutput getContentPlain(...
if (!file.exists()) { throw new FileNotFoundException(String.format("file %s does not exist", file)); } return out -> { try (InputStream in = new FileInputStream(file)) { byte[] buffer = new byte[1024]; int len = in.read(buffer); ...
871
126
997
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/GroupsController.java
GroupsController
matchProject
class GroupsController { public static final String GROUPS_PATH = "groups"; private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); @GET @Produces(MediaType.APPLICATION_JSON) public List<String> listGroups() { if (env.hasGroups()) { return Objects.requireNonNul...
// Avoid classification as a taint bug. final String projectName = Laundromat.launderInput(projectNameParam); // Avoid classification as a taint bug. groupName = Laundromat.launderInput(groupName); Group group; group = Group.getByName(groupName); if (group == nu...
571
161
732
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/HistoryController.java
HistoryDTO
equals
class HistoryDTO implements JSONable { @JsonProperty private final List<HistoryEntryDTO> entries; @JsonProperty private int start; @JsonProperty private int count; @JsonProperty private int total; @TestOnly HistoryDTO() { this....
return Optional.ofNullable(obj) .filter(other -> getClass() == other.getClass()) .map(HistoryDTO.class::cast) .filter(other -> Objects.equals(this.entries, other.entries)) .filter(other -> Objects.equals(this.start, other.start...
237
135
372
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/MessagesController.java
MessagesController
removeMessagesWithTag
class MessagesController { private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); @POST @Consumes(MediaType.APPLICATION_JSON) public Response addMessage(@Valid final Message message) { env.addMessage(message); return Response.status(Response.Status.CREATED).build(); ...
if (tag == null) { throw new WebApplicationException("Message tag has to be specified", Response.Status.BAD_REQUEST); } env.removeAnyMessage(Collections.singleton(tag), text);
223
56
279
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/RepositoriesController.java
RepositoriesController
getRepositoryInfoData
class RepositoriesController { private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); private Object getRepositoryInfoData(String repositoryPath) {<FILL_FUNCTION_BODY>} @GET @Path("/property/{field}") @Produces(MediaType.APPLICATION_JSON) public Object get(@QueryParam("repos...
for (RepositoryInfo ri : env.getRepositories()) { if (ri.getDirectoryNameRelative().equals(repositoryPath)) { return DTOUtil.createDTO(ri); } } return null;
186
63
249
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/SearchController.java
SearchEngineWrapper
search
class SearchEngineWrapper implements AutoCloseable { private final SearchEngine engine = new SearchEngine(); private int numResults; private SearchEngineWrapper( final String full, final String def, final String symbol, final Str...
Set<Project> allProjects = PageConfig.get(req).getProjectHelper().getAllProjects(); if (projects == null || projects.isEmpty()) { numResults = engine.search(new ArrayList<>(allProjects)); } else { numResults = engine.search(allProjects.stream() ...
260
209
469
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/StatusController.java
StatusController
delete
class StatusController { public static final String PATH = "status"; private static final Logger LOGGER = LoggerFactory.getLogger(StatusController.class); @GET @Path("/{uuid}") public Response getStatus(@PathParam("uuid") String uuid) { ApiTask apiTask = ApiTaskManager.getInstance().getAp...
ApiTask apiTask = ApiTaskManager.getInstance().getApiTask(uuid); if (apiTask == null) { return Response.status(Response.Status.NOT_FOUND).build(); } if (!apiTask.isDone()) { LOGGER.log(Level.WARNING, "API task {0} not yet done", apiTask); return Resp...
217
138
355
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/controller/SystemController.java
SystemController
getIndexTime
class SystemController { public static final String PATH = "system"; private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); private static final Logger LOGGER = LoggerFactory.getLogger(SystemController.class); @PUT @Path("/includes/reload") public void reloadIncludes() { ...
Date date = new IndexTimestamp().getDateForLastIndexRun(); ObjectMapper mapper = new ObjectMapper(); // StdDateFormat is ISO8601 since jackson 2.9 mapper.setDateFormat(new StdDateFormat().withColonInTimeZone(true)); return mapper.writeValueAsString(date);
358
87
445
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/filter/CorsFilter.java
CorsFilter
filter
class CorsFilter implements ContainerResponseFilter { public static final String ALLOW_CORS_HEADER = "Access-Control-Allow-Origin"; public static final String CORS_REQUEST_HEADER = "Origin"; /** * Method for ContainerResponseFilter. */ @Override public void filter(ContainerRequestContext...
// if there is no Origin header, then it is not a // cross origin request. We don't do anything. if (request.getHeaderString(CORS_REQUEST_HEADER) == null) { return; } response.getHeaders().add(ALLOW_CORS_HEADER, "*");
106
84
190
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/filter/IncomingFilter.java
IncomingFilter
filter
class IncomingFilter implements ContainerRequestFilter, ConfigurationChangedListener { private static final Logger LOGGER = LoggerFactory.getLogger(IncomingFilter.class); /** * Endpoint paths that are exempted from this filter. * @see SearchController#search(HttpServletRequest, String, String, Strin...
if (request == null) { // happens in tests return; } String path = context.getUriInfo().getPath(); boolean isTokenValid = Optional.ofNullable(request.getHeader(HttpHeaders.AUTHORIZATION)) .filter(authHeaderValue -> authHeaderValue.startsWith(BEARER)) ...
631
522
1,153
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/filter/PathAuthorizationFilter.java
PathAuthorizationFilter
isPathAuthorized
class PathAuthorizationFilter implements ContainerRequestFilter { private static final Logger logger = LoggerFactory.getLogger(PathAuthorizationFilter.class); private static final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); public static final String PATH_PARAM = "path"; @Context ...
if (request != null) { AuthorizationFramework auth = env.getAuthorizationFramework(); if (auth != null) { Project p = Project.getProject(path.startsWith("/") ? path : "/" + path); return p == null || auth.isAllowed(request, p); } } ...
343
91
434
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/suggester/parser/SuggesterQueryDataParser.java
SuggesterQueryDataParser
getFieldQueries
class SuggesterQueryDataParser { private static final int IDENTIFIER_LENGTH = 5; private static final Logger logger = LoggerFactory.getLogger(SuggesterQueryDataParser.class); private SuggesterQueryDataParser() { } /** * Parses the {@link SuggesterQueryData}. * @param data data to parse...
Map<String, String> map = new HashMap<>(); map.put(QueryBuilder.FULL, data.getFull()); map.put(QueryBuilder.DEFS, data.getDefs()); map.put(QueryBuilder.REFS, data.getRefs()); map.put(QueryBuilder.PATH, data.getPath()); map.put(QueryBuilder.HIST, data.getHist()); ...
973
127
1,100
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/suggester/provider/filter/AuthorizationFilter.java
AuthorizationFilter
filter
class AuthorizationFilter implements ContainerRequestFilter { public static final String PROJECTS_PARAM = "projects[]"; private final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); @Context private HttpServletRequest request; /** * Checks if the request contains {@link #PROJECTS...
if (request == null) { // happens in tests return; } AuthorizationFramework auth = env.getAuthorizationFramework(); if (auth != null) { String[] projects = request.getParameterValues(PROJECTS_PARAM); if (projects != null) { for (String...
139
149
288
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/api/v1/suggester/query/SuggesterQueryBuilder.java
SuggesterQueryBuilder
buildQuery
class SuggesterQueryBuilder extends QueryBuilder { private final String suggestField; private final String identifier; private SuggesterQueryParser suggesterQueryParser; /** * @param suggestField field that contain the {@link SuggesterQuery} * @param identifier identifier that was inserted ...
if (field.equals(suggestField)) { suggesterQueryParser = new SuggesterQueryParser(field, identifier); return suggesterQueryParser.parse(queryText); } else { return new CustomQueryParser(field).parse(queryText); }
274
71
345
<methods>public non-sealed void <init>() ,public Query build() throws ParseException,public List<java.lang.String> getContextFields() ,public java.lang.String getDefs() ,public java.lang.String getDirPath() ,public java.lang.String getFreetext() ,public java.lang.String getHist() ,public java.lang.String getPath() ,pub...
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/util/DTOUtil.java
DTOUtil
createDTO
class DTOUtil { private DTOUtil() { // private to ensure static } // ModelMapper is thread-safe and we only need to convert different object types for now // so it should be safe to reuse its instance. private static final ModelMapper modelMapper = new ModelMapper(); /** * Generat...
// ModelMapper assumes getters/setters so use BeanGenerator to provide them. BeanGenerator beanGenerator = new BeanGenerator(); for (Field field : object.getClass().getDeclaredFields()) { if (field.isAnnotationPresent(DTOElement.class)) { beanGenerator.addProperty(fi...
178
120
298
<no_super_class>
oracle_opengrok
opengrok/opengrok-web/src/main/java/org/opengrok/web/util/FileUtil.java
FileUtil
toFile
class FileUtil { private static final RuntimeEnvironment env = RuntimeEnvironment.getInstance(); // private to enforce static private FileUtil() { } /** * @param path path relative to source root * @return file object corresponding to the file under source root * @throws FileNotFou...
if (path == null) { throw new NoPathParameterException("Missing path parameter"); } File file = new File(env.getSourceRootFile(), path); if (!file.getCanonicalPath().startsWith(env.getSourceRootPath() + File.separator)) { throw new InvalidPathException(path, "F...
199
134
333
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/entity/LdapUser.java
LdapUser
toString
class LdapUser implements Serializable { private String dn; // Distinguished Name private final Map<String, Set<String>> attributes; private static final long serialVersionUID = 1L; public LdapUser() { this(null, null); } public LdapUser(String dn, Map<String, Set<String>> attrs) { ...
return "LdapUser{dn=" + dn + "; attributes=" + attributes + '}';
335
29
364
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/LdapAttrPlugin.java
LdapAttrPlugin
init
class LdapAttrPlugin extends AbstractLdapPlugin { private static final Logger LOGGER = Logger.getLogger(LdapAttrPlugin.class.getName()); /** * List of configuration names. * <ul> * <li><code>attribute</code> is LDAP attribute to check (mandatory)</li> * <li><code>file</code> whitelist file...
if ((ldapAttr = (String) parameters.get(ATTR_PARAM)) == null) { throw new NullPointerException("Missing param [" + ATTR_PARAM + "] in the setup"); } if ((filePath = (String) parameters.get(FILE_PARAM)) == null) { throw new NullPointerException("Missing param [" + FILE_P...
1,392
295
1,687
<methods>public abstract boolean checkEntity(HttpServletRequest, org.opengrok.indexer.configuration.Project) ,public abstract boolean checkEntity(HttpServletRequest, org.opengrok.indexer.configuration.Group) ,public abstract void fillSession(HttpServletRequest, opengrok.auth.plugin.entity.User) ,public opengrok.auth.pl...
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/LdapFilterPlugin.java
LdapFilterPlugin
load
class LdapFilterPlugin extends AbstractLdapPlugin { private static final Logger LOGGER = Logger.getLogger(LdapFilterPlugin.class.getName()); protected static final String FILTER_PARAM = "filter"; protected static final String TRANSFORMS_PARAM = "transforms"; private static final String SESSION_ALLOWED...
super.load(parameters); if ((ldapFilter = (String) parameters.get(FILTER_PARAM)) == null) { throw new NullPointerException("Missing param [" + FILTER_PARAM + "] in the setup"); } String instance = (String) parameters.get(INSTANCE); if (instance != null) { ...
1,482
211
1,693
<methods>public abstract boolean checkEntity(HttpServletRequest, org.opengrok.indexer.configuration.Project) ,public abstract boolean checkEntity(HttpServletRequest, org.opengrok.indexer.configuration.Group) ,public abstract void fillSession(HttpServletRequest, opengrok.auth.plugin.entity.User) ,public opengrok.auth.pl...
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/UserPlugin.java
UserPlugin
load
class UserPlugin implements IAuthorizationPlugin { private static final Logger LOGGER = Logger.getLogger(UserPlugin.class.getName()); static final String DECODER_CLASS_PARAM = "decoder"; public static final String REQUEST_ATTR = "opengrok-user-plugin-user"; private IUserDecoder decoder; public ...
String decoderName; if ((decoderName = (String) parameters.get(DECODER_CLASS_PARAM)) == null) { throw new NullPointerException(String.format("missing " + "parameter '%s' in %s configuration", DECODER_CLASS_PARAM, UserPlugin.class.getName())); ...
437
177
614
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/UserWhiteListPlugin.java
UserWhiteListPlugin
load
class UserWhiteListPlugin implements IAuthorizationPlugin { private static final String CLASS_NAME = UserWhiteListPlugin.class.getName(); private static final Logger LOGGER = Logger.getLogger(CLASS_NAME); // configuration parameters static final String FILE_PARAM = "file"; static final String FIELD...
if (parameters == null) { throw new IllegalArgumentException("Null parameter"); } String filePath; if ((filePath = (String) parameters.get(FILE_PARAM)) == null) { throw new IllegalArgumentException("Missing parameter [" + FILE_PARAM + "] in the configuration"); ...
482
340
822
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/configuration/Configuration.java
Configuration
encodeObject
class Configuration implements Serializable { private static final long serialVersionUID = -1; private List<LdapServer> servers = new ArrayList<>(); private int interval; private String searchBase; private WebHooks webHooks; private int searchTimeout; private int connectTimeout; privat...
try (XMLEncoder e = new XMLEncoder(new BufferedOutputStream(out))) { e.writeObject(this); }
852
41
893
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/configuration/PluginConfigurationClassLoader.java
PluginConfigurationClassLoader
loadClass
class PluginConfigurationClassLoader extends ClassLoader { private static final Set<String> allowedClasses = Set.of( Collections.class, Configuration.class, LdapServer.class, String.class, WebHook.class, WebHooks.class, XMLDecoder....
if (!allowedClasses.contains(name)) { throw new IllegalAccessError(name + " is not allowed to be used in configuration"); } return getClass().getClassLoader().loadClass(name);
135
54
189
<methods>public void clearAssertionStatus() ,public final java.lang.Package getDefinedPackage(java.lang.String) ,public final java.lang.Package[] getDefinedPackages() ,public java.lang.String getName() ,public final java.lang.ClassLoader getParent() ,public static java.lang.ClassLoader getPlatformClassLoader() ,public ...
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/decoders/MellonHeaderDecoder.java
MellonHeaderDecoder
fromRequest
class MellonHeaderDecoder implements IUserDecoder { private static final Logger LOGGER = Logger.getLogger(MellonHeaderDecoder.class.getName()); static final String MELLON_EMAIL_HEADER = "MELLON_email"; static final String MELLON_USERNAME_HEADER = "MELLON_username"; @Override public User fromReque...
// e-mail is mandatory. String id = request.getHeader(MELLON_EMAIL_HEADER); if (id == null || id.isEmpty()) { LOGGER.log(Level.WARNING, "Can not construct User object: header ''{1}'' not found in request headers: {0}", new Object[]{String.join...
120
165
285
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/decoders/OSSOHeaderDecoder.java
OSSOHeaderDecoder
fromRequest
class OSSOHeaderDecoder implements IUserDecoder { private static final Logger LOGGER = Logger.getLogger(OSSOHeaderDecoder.class.getName()); protected static final String OSSO_COOKIE_TIMESTAMP_HEADER = "osso-cookie-timestamp"; protected static final String OSSO_TIMEOUT_EXCEEDED_HEADER = "osso-idle-timeout-...
Date cookieTimestamp = null; // Avoid classification as a taint bug. var username = Laundromat.launderInput(request.getHeader(OSSO_USER_DN_HEADER)); var timeouted = Laundromat.launderInput(request.getHeader(OSSO_TIMEOUT_EXCEEDED_HEADER)); var timestamp = Laundromat.launderInput...
249
590
839
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/decoders/UserPrincipalDecoder.java
UserPrincipalDecoder
fromRequest
class UserPrincipalDecoder implements IUserDecoder { private static final Logger LOGGER = Logger.getLogger(UserPrincipalDecoder.class.getName()); @Override public User fromRequest(HttpServletRequest request) {<FILL_FUNCTION_BODY>} }
if (request.getUserPrincipal() == null) { return null; } String username = request.getUserPrincipal().getName(); if (username == null || username.isEmpty()) { LOGGER.log(Level.WARNING, "Can not construct User object: cannot get user principal...
72
105
177
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/entity/User.java
User
toString
class User { private String id; private String username; private Date cookieTimestamp; private boolean timeouted; private final Map<String, Object> attrs = new HashMap<>(); public User(String username) { this.username = username; } /** * Construct User object. * @par...
return "User{" + "id=" + id + ", username=" + username + ", cookieTimestamp=" + cookieTimestamp + ", timeouted=" + timeouted + ", attrs=" + attrs + '}';
454
56
510
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/ldap/FakeLdapFacade.java
FakeLdapFacade
lookupLdapContent
class FakeLdapFacade extends AbstractLdapProvider { @Override public LdapSearchResult<Map<String, Set<String>>> lookupLdapContent(String dn, String filter, String[] values) {<FILL_FUNCTION_BODY>} @Override public boolean isConfigured() { return true; } @Override public void close(...
Map<String, Set<String>> map = new TreeMap<>(); filter = filter == null ? "objectclass=*" : filter; values = values == null ? new String[]{"dn", "ou"} : values; if ("objectclass=*".equals(filter)) { List<String> v = Arrays.asList(values); if (v.isEmpty()) { ...
122
327
449
<methods>public non-sealed void <init>() ,public abstract void close() ,public abstract boolean isConfigured() ,public LdapSearchResult<Map<java.lang.String,Set<java.lang.String>>> lookupLdapContent(java.lang.String) throws opengrok.auth.plugin.ldap.LdapException,public LdapSearchResult<Map<java.lang.String,Set<java.la...
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/ldap/LdapFacade.java
ContentAttributeMapper
isConfigured
class ContentAttributeMapper implements AttributeMapper<Map<String, Set<String>>> { private final String[] values; /** * Create a new mapper which retrieves the given values in the resulting * set. * * @param values include these values in the result */ ...
return servers != null && !servers.isEmpty() && searchBase != null && actualServer != -1;
1,183
30
1,213
<methods>public non-sealed void <init>() ,public abstract void close() ,public abstract boolean isConfigured() ,public LdapSearchResult<Map<java.lang.String,Set<java.lang.String>>> lookupLdapContent(java.lang.String) throws opengrok.auth.plugin.ldap.LdapException,public LdapSearchResult<Map<java.lang.String,Set<java.la...
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/util/FilterUtil.java
FilterUtil
replace
class FilterUtil { private FilterUtil() { // utility class } private static final String LOWER_CASE = "toLowerCase"; private static final String UPPER_CASE = "toUpperCase"; /** * Verify the names of the transforms in the map. * @param transforms map of attribute transforms. Vali...
if (transforms != null) { String transform; if ((transform = transforms.get(name)) != null) { value = doTransform(value, transform); } } return filter.replaceAll("(?<!\\\\)%" + name + "(?<!\\\\)%", value);
794
86
880
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/util/RestfulClient.java
RestfulClient
postIt
class RestfulClient { private static final Logger LOGGER = Logger.getLogger(RestfulClient.class.getName()); private RestfulClient() { // private to ensure static } /** * Perform HTTP POST request. * @param uri URI * @param input JSON string contents * @return HTTP status or...
int result; try { try (Client client = ClientBuilder.newBuilder(). connectTimeout(RuntimeEnvironment.getInstance().getConnectTimeout(), TimeUnit.SECONDS).build()) { LOGGER.log(Level.FINEST, "sending REST POST request to {0}: {1}", ...
120
248
368
<no_super_class>
oracle_opengrok
opengrok/plugins/src/main/java/opengrok/auth/plugin/util/WebHook.java
WebHook
post
class WebHook implements Serializable { private static final long serialVersionUID = -1; private String uri; private String content; public WebHook() { } WebHook(String uri, String content) { this.uri = uri; this.content = content; } public void setURI(String uri) { ...
CompletableFuture<String> completableFuture = new CompletableFuture<>(); Executors.newCachedThreadPool(new OpenGrokThreadFactory("webhook-")).submit(() -> { int status = RestfulClient.postIt(getURI(), getContent()); completableFuture.complete(String.valueOf(status)); ...
180
100
280
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/LookupPriorityQueue.java
LookupPriorityQueue
getResult
class LookupPriorityQueue extends PriorityQueue<LookupResultItem> { private final int maxSize; LookupPriorityQueue(final int maxSize) { super(maxSize); this.maxSize = maxSize; } /** {@inheritDoc} */ @Override protected boolean lessThan(final LookupResultItem item1, final Looku...
int size = this.size(); LookupResultItem[] res = new LookupResultItem[size]; for (int i = size - 1; i >= 0; i--) { // iterate from top so results are ordered in descending order res[i] = this.pop(); } return Arrays.asList(res);
286
89
375
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/LookupResultItem.java
LookupResultItem
combine
class LookupResultItem implements Comparable<LookupResultItem> { private final String phrase; private final Set<String> projects = new HashSet<>(); private long score; LookupResultItem(final String phrase, final String project, final long score) { this.phrase = phrase; this.projects....
if (other == null || !canBeCombinedWith(other)) { throw new IllegalArgumentException("Cannot combine with " + other); } projects.addAll(other.projects); score += other.score;
491
58
549
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/SuggestResultCollector.java
SuggesterLeafCollector
setScorer
class SuggesterLeafCollector implements LeafCollector { private final LeafReaderContext context; private final int docBase; private SuggesterLeafCollector(LeafReaderContext context) { this.context = context; docBase = this.context.docBase; } /** ...
if (leafReaderContext == context) { if (scorer instanceof PhraseScorer) { data.scorer = (PhraseScorer) scorer; } else { try { // it is mentioned in the documentation that #getChildren should not be called ...
427
162
589
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/SuggesterUtils.java
SuggesterUtils
intoTerms
class SuggesterUtils { public static final int NORMALIZED_DOCUMENT_FREQUENCY_MULTIPLIER = 1000; private static final Logger logger = Logger.getLogger(SuggesterUtils.class.getName()); private static final long DEFAULT_TERM_WEIGHT = 0; private SuggesterUtils() { } /** * Combines the sugg...
if (query == null) { return Collections.emptyList(); } List<Term> terms = new LinkedList<>(); LinkedList<Query> queue = new LinkedList<>(); queue.add(query); while (!queue.isEmpty()) { Query q = queue.poll(); if (q instanceof Boole...
1,135
202
1,337
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/popular/impl/chronicle/BytesRefDataAccess.java
BytesRefDataAccess
getUsing
class BytesRefDataAccess extends AbstractData<BytesRef> implements DataAccess<BytesRef> { /** Cache field. */ private transient BytesStore<?, ?> bs; /** State field. */ private transient byte[] array; public BytesRefDataAccess() { initTransients(); } private void initTransients()...
using = Optional.ofNullable(using) .orElseGet( () -> new BytesRef(new byte[array.length]) ); if (using.bytes.length < array.length) { using.bytes = new byte[array.length]; } System.arraycopy(array, 0, using.bytes, 0, ar...
472
119
591
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/popular/impl/chronicle/BytesRefSizedReader.java
BytesRefSizedReader
read
class BytesRefSizedReader implements SizedReader<BytesRef>, Marshallable, ReadResolvable<BytesRefSizedReader> { public static final BytesRefSizedReader INSTANCE = new BytesRefSizedReader(); private BytesRefSizedReader() { } @NotNull @Override @SuppressWarnings({"rawtypes"}) public BytesRe...
if (size < 0L || size > Integer.MAX_VALUE) { throw new IORuntimeException("byte[] size should be non-negative int, " + size + " given. Memory corruption?"); } int arrayLength = (int) size; using = Optional.ofNullable(using) .orElseGet( () ...
227
172
399
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/popular/impl/chronicle/ChronicleMapAdapter.java
ChronicleMapAdapter
getPopularityData
class ChronicleMapAdapter implements PopularityMap { private ChronicleMap<BytesRef, Integer> map; private final File chronicleMapFile; public ChronicleMapAdapter(final String name, final double averageKeySize, final int entries, final File file) throws IOException { map = ChronicleMap...
if (page < 0) { throw new IllegalArgumentException("Cannot retrieve popularity data for negative page: " + page); } if (pageSize < 0) { throw new IllegalArgumentException("Cannot retrieve negative number of results: " + pageSize); } List<Entry<BytesRef, ...
836
199
1,035
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/popular/impl/chronicle/ChronicleMapConfiguration.java
ChronicleMapConfiguration
load
class ChronicleMapConfiguration implements Serializable { private static final long serialVersionUID = -18408710536443827L; private static final Logger logger = Logger.getLogger(ChronicleMapConfiguration.class.getName()); private static final String FILE_NAME_SUFFIX = "_map.cfg"; private int entries...
File f = getFile(dir, field); if (!f.exists()) { return null; } try (ObjectInputStream ois = new ObjectInputStream(new FileInputStream(f))) { ois.setObjectInputFilter(filterInfo -> filterInfo.serialClass() == null || filterInfo.serialClass() =...
517
165
682
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterFuzzyQuery.java
SuggesterFuzzyQuery
getTermsEnumForSuggestions
class SuggesterFuzzyQuery extends FuzzyQuery implements SuggesterQuery { public SuggesterFuzzyQuery(final Term term, final int maxEdits, final int prefixLength) { super(term, maxEdits, prefixLength); } /** {@inheritDoc} */ @Override public TermsEnum getTermsEnumForSuggestions(final Terms t...
if (terms == null) { return TermsEnum.EMPTY; } return getTermsEnum(terms, new AttributeSource());
149
40
189
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterPhraseQuery.java
SuggesterPhraseQuery
toString
class SuggesterPhraseQuery extends Query { private enum SuggestPosition { START, MIDDLE, END; private static SuggestPosition from(final int pos, final int size) { if (pos == 0) { return SuggestPosition.START; } else if (pos == size - 1) { ret...
return "SuggesterPhraseQuery{" + "phraseQuery=" + phraseQuery + ", suggesterQuery=" + suggesterQuery + '}';
948
45
993
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterPrefixQuery.java
SuggesterPrefixQuery
getTermsEnumForSuggestions
class SuggesterPrefixQuery extends PrefixQuery implements SuggesterQuery { /** * @param prefix term prefix */ public SuggesterPrefixQuery(final Term prefix) { super(prefix); } /** {@inheritDoc} */ @Override public TermsEnum getTermsEnumForSuggestions(final Terms terms) throws...
if (terms == null) { return TermsEnum.EMPTY; } return super.getTermsEnum(terms, new AttributeSource());
140
42
182
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterRangeQuery.java
SuggesterRangeQuery
getTermsEnumForSuggestions
class SuggesterRangeQuery extends TermRangeQuery implements SuggesterQuery { private static final Logger logger = Logger.getLogger(SuggesterRangeQuery.class.getName()); private final SuggestPosition suggestPosition; /** * @param field term field * @param lowerTerm term on the left side of the r...
if (terms == null) { return TermsEnum.EMPTY; } BytesRef prefix = getPrefix(); if (prefix != null) { Automaton prefixAutomaton = PrefixQuery.toAutomaton(prefix); Automaton finalAutomaton; if (suggestPosition == SuggestPosition.LOWER) { ...
618
298
916
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterRegexpQuery.java
SuggesterRegexpQuery
getTermsEnumForSuggestions
class SuggesterRegexpQuery extends RegexpQuery implements SuggesterQuery { /** * @param term term with regexp symbols */ public SuggesterRegexpQuery(final Term term) { super(term); } /** {@inheritDoc} */ @Override public TermsEnum getTermsEnumForSuggestions(final Terms terms)...
if (terms == null) { return TermsEnum.EMPTY; } return super.getTermsEnum(terms);
150
37
187
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/SuggesterWildcardQuery.java
SuggesterWildcardQuery
getTermsEnumForSuggestions
class SuggesterWildcardQuery extends WildcardQuery implements SuggesterQuery { /** * @param term term with wildcard symbols */ public SuggesterWildcardQuery(final Term term) { super(term); } /** {@inheritDoc} */ @Override public TermsEnum getTermsEnumForSuggestions(final Term...
if (terms == null) { return TermsEnum.EMPTY; } return super.getTermsEnum(terms, new AttributeSource());
147
42
189
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/customized/CustomExactPhraseScorer.java
PostingsAndPosition
toString
class PostingsAndPosition { private final PostingsEnum postings; private final int offset; private int freq; private int upTo; private int pos; PostingsAndPosition(PostingsEnum postings, int offset) { this.postings = postings; this.offset = offset...
return "CustomExactPhraseScorer(" + weight + ")"; // custom – renamed class
736
27
763
<no_super_class>
oracle_opengrok
opengrok/suggester/src/main/java/org/opengrok/suggest/query/customized/CustomPhraseQuery.java
CustomPhraseWeight
scorer
class CustomPhraseWeight extends Weight { private final CustomPhraseQuery query; private final TermStates[] states; CustomPhraseWeight(IndexSearcher searcher, CustomPhraseQuery query) throws IOException { super(query); this.query = query; this.states = new...
LeafReader reader = context.reader(); CustomPhraseQuery.PostingsAndFreq[] postingsFreqs = new CustomPhraseQuery.PostingsAndFreq[query.terms.length]; String field = query.terms[0].field(); Terms fieldTerms = reader.terms(field); if (fieldTerms == null) { ...
252
404
656
<no_super_class>