proj_name stringclasses 131
values | relative_path stringlengths 30 228 | class_name stringlengths 1 68 | func_name stringlengths 1 48 | masked_class stringlengths 78 9.82k | func_body stringlengths 46 9.61k | len_input int64 29 2.01k | len_output int64 14 1.94k | total int64 55 2.05k | relevant_context stringlengths 0 38.4k |
|---|---|---|---|---|---|---|---|---|---|
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterBuilderCSV.java | ExporterBuilderCSV | getFileTypes | class ExporterBuilderCSV implements GraphFileExporterBuilder {
@Override
public GraphExporter buildExporter() {
return new ExporterCSV();
}
@Override
public FileType[] getFileTypes() {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return "CSV";
}
} |
FileType ft = new FileType(new String[] {".csv", ".edges"},
NbBundle.getMessage(ExporterBuilderCSV.class, "fileType_CSV_Name"));
return new FileType[] {ft};
| 95 | 59 | 154 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterBuilderGraphML.java | ExporterBuilderGraphML | getFileTypes | class ExporterBuilderGraphML implements GraphFileExporterBuilder {
@Override
public GraphExporter buildExporter() {
return new ExporterGraphML();
}
@Override
public FileType[] getFileTypes() {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return "GraphML";
}... |
FileType ft =
new FileType(".graphml", NbBundle.getMessage(ExporterBuilderGraphML.class, "fileType_GraphML_Name"));
return new FileType[] {ft};
| 95 | 51 | 146 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterBuilderSpreadsheet.java | ExporterBuilderSpreadsheet | getFileTypes | class ExporterBuilderSpreadsheet implements GraphFileExporterBuilder {
@Override
public GraphExporter buildExporter() {
return new ExporterSpreadsheet();
}
@Override
public FileType[] getFileTypes() {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return "Spreads... |
FileType ft = new FileType(new String[] {".csv", ".tsv"},
NbBundle.getMessage(ExporterBuilderSpreadsheet.class, "fileType_Spreadsheet_Name"));
return new FileType[] {ft};
| 98 | 61 | 159 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterCSV.java | ExporterCSV | writeMatrixNode | class ExporterCSV implements GraphExporter, CharacterExporter, LongTask {
private static final String SEPARATOR = ";";
private static final String EOL = "\n";
/**
* Formatter for limiting precision to 6 decimals, avoiding precision errors (epsilon).
*/
private static final DecimalFormat FORMA... |
if (header) {
Object label = node.getId();
writer.append(label.toString());
if (writeSeparator) {
writer.append(SEPARATOR);
}
}
| 1,519 | 54 | 1,573 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterJson.java | GraphTypeAdapter | writeOptions | class GraphTypeAdapter extends WriteTypeAdapter<Graph> {
private final TypeAdapter<Node> nodeTypeAdapter;
private final TypeAdapter<Edge> edgeTypeAdapter;
public GraphTypeAdapter(Gson gson) {
nodeTypeAdapter = gson.getAdapter(Node.class);
edgeTypeAdapter = gson.getAdapt... |
out.name("options");
out.beginObject();
out.name("multi");
out.value(graph.getModel().getEdgeTypeLabels(false).length > 1);
out.name("allowSelfLoops");
out.value(true);
out.name("type");
out.value(
graph... | 519 | 128 | 647 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/ExporterPajek.java | ExporterPajek | execute | class ExporterPajek implements GraphExporter, CharacterExporter, LongTask {
// Options
private boolean exportPosition = true;
private boolean exportEdgeWeight = true;
// Architecture
private Workspace workspace;
private Writer writer;
private boolean exportVisible;
private boolean cance... |
GraphModel graphModel = workspace.getLookup().lookup(GraphModel.class);
Graph graph = exportVisible ? graphModel.getGraphVisible() : graphModel.getGraph();
graph.readLock();
try {
exportData(graph);
} catch (Exception e) {
Logger.getLogger(ExporterPajek... | 948 | 140 | 1,088 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPlugin/src/main/java/org/gephi/io/exporter/plugin/NormalizationHelper.java | NormalizationHelper | normalizeSize | class NormalizationHelper {
public static NormalizationHelper build(boolean enabled, Graph graph) {
return new NormalizationHelper(enabled, graph);
}
private final boolean enabled;
protected final float minSize;
protected final float maxSize;
protected final float minX;
protected f... |
if (enabled && size != 0.0) {
if (maxSize == minSize) {
return 1f;
}
return (size - minSize) / (maxSize - minSize);
} else {
return size;
}
| 798 | 68 | 866 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterCSV.java | UIExporterCSV | unsetup | class UIExporterCSV implements ExporterUI {
private final ExporterCSVSettings settings = new ExporterCSVSettings();
private UIExporterCSVPanel panel;
private ExporterCSV exporterCSV;
@Override
public void setup(Exporter exporter) {
exporterCSV = (ExporterCSV) exporter;
settings.loa... |
if (update) {
panel.unsetup(exporterCSV);
settings.save(exporterCSV);
}
panel = null;
exporterCSV = null;
| 583 | 51 | 634 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterCSVPanel.java | UIExporterCSVPanel | initComponents | class UIExporterCSVPanel extends javax.swing.JPanel {
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.ButtonGroup buttonGroup1;
private javax.swing.JCheckBox edgeWeightCheckbox;
private javax.swing.JLabel labelExport;
private javax.swing.JRadioButton listRadio;
... |
bindingGroup = new org.jdesktop.beansbinding.BindingGroup();
buttonGroup1 = new javax.swing.ButtonGroup();
edgeWeightCheckbox = new javax.swing.JCheckBox();
labelExport = new javax.swing.JLabel();
nodeIdCheckbox = new javax.swing.JCheckBox();
zeroEdgeCheckbox = new java... | 523 | 1,429 | 1,952 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterDL.java | UIExporterDL | setup | class UIExporterDL implements ExporterUI {
private final ExporterDLSettings settings = new ExporterDLSettings();
private UIExporterDLPanel panel;
private ExporterDL exporter;
@Override
public JPanel getPanel() {
panel = new UIExporterDLPanel();
return panel;
}
@Override
... |
this.exporter = (ExporterDL) exporter;
settings.load(this.exporter);
if (panel != null) {
panel.setup(this.exporter);
}
| 562 | 53 | 615 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterDLPanel.java | UIExporterDLPanel | initComponents | class UIExporterDLPanel extends javax.swing.JPanel {
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JRadioButton listRadioButton;
private javax.swing.JRadioButton matrixRadioButton;
private javax.swing.JCheckBox symmetricCheckBox;
// End of variables declaration/... |
matrixRadioButton = new javax.swing.JRadioButton();
listRadioButton = new javax.swing.JRadioButton();
symmetricCheckBox = new javax.swing.JCheckBox();
matrixRadioButton.setText("Matrix");
matrixRadioButton.addActionListener(new java.awt.event.ActionListener() {
@Ov... | 646 | 636 | 1,282 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterGDF.java | UIExporterGDF | setup | class UIExporterGDF implements ExporterUI {
private final ExporterGDFSettings settings = new ExporterGDFSettings();
private UIExporterGDFPanel panel;
private ExporterGDF exporterGDF;
@Override
public void setup(Exporter exporter) {<FILL_FUNCTION_BODY>}
@Override
public void unsetup(boolea... |
exporterGDF = (ExporterGDF) exporter;
settings.load(exporterGDF);
if (panel != null) {
panel.setup(exporterGDF);
}
| 827 | 54 | 881 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterGEXF.java | UIExporterGEXF | unsetup | class UIExporterGEXF implements ExporterUI {
private final ExporterGEXFSettings settings = new ExporterGEXFSettings();
private UIExporterGEXFPanel panel;
private ExporterGEXF exporterGEXF;
@Override
public void setup(Exporter exporter) {
exporterGEXF = (ExporterGEXF) exporter;
sett... |
if (update) {
panel.unsetup(exporterGEXF);
settings.save(exporterGEXF);
}
panel = null;
exporterGEXF = null;
| 953 | 54 | 1,007 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterGML.java | ExporterGMLSettings | save | class ExporterGMLSettings extends AbstractExporterSettings {
// Preference names
private final static String EXPORT_LABEL = "GML_exportLabel";
private final static String EXPORT_COORDINATES = "GML_exportCoordinates";
private final static String EXPORT_NODE_SIZE = "GML_exportNodeSize";
... |
put(EXPORT_COLOR, exporter.isExportColor());
put(EXPORT_COORDINATES, exporter.isExportCoordinates());
put(EXPORT_EDGE_SIZE, exporter.isExportEdgeSize());
put(EXPORT_LABEL, exporter.isExportLabel());
put(EXPORT_NODE_SIZE, exporter.isExportNodeSize());
... | 462 | 153 | 615 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterGraphML.java | ExporterGraphMLSettings | save | class ExporterGraphMLSettings extends AbstractExporterSettings {
// Preference names
private final static String NORMALIZE = "GraphML_normalize";
private final static String EXPORT_COLORS = "GraphML_exportColors";
private final static String EXPORT_POSITION = "GraphML_exportPosition";
... |
put(NORMALIZE, exporterGraphML.isNormalize());
put(EXPORT_COLORS, exporterGraphML.isExportColors());
put(EXPORT_POSITION, exporterGraphML.isExportPosition());
put(EXPORT_SIZE, exporterGraphML.isExportSize());
put(EXPORT_ATTRIBUTES, exporterGraphML.isExportAtt... | 318 | 100 | 418 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterGraphMLPanel.java | UIExporterGraphMLPanel | initComponents | class UIExporterGraphMLPanel extends javax.swing.JPanel {
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JCheckBox attributesExportCheckbox;
private javax.swing.JCheckBox colorsExportCheckbox;
private javax.swing.JLabel labelExport;
private javax.swing.JLabel labe... |
labelExport = new javax.swing.JLabel();
positionExportCheckbox = new javax.swing.JCheckBox();
colorsExportCheckbox = new javax.swing.JCheckBox();
attributesExportCheckbox = new javax.swing.JCheckBox();
sizeExportCheckbox = new javax.swing.JCheckBox();
labelNormalize = n... | 554 | 1,171 | 1,725 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterJson.java | ExporterJsonSettings | load | class ExporterJsonSettings extends AbstractExporterSettings {
// Preference names
private final static String NORMALIZE = "Json_normalize";
private final static String EXPORT_COLORS = "Json_exportColors";
private final static String EXPORT_POSITION = "Json_exportPosition";
priva... |
exporterJson.setNormalize(get(NORMALIZE, DEFAULT.isNormalize()));
exporterJson.setExportColors(get(EXPORT_COLORS, DEFAULT.isExportColors()));
exporterJson.setExportAttributes(get(EXPORT_ATTRIBUTES, DEFAULT.isExportAttributes()));
exporterJson.setExportPosition(get(EXPORT... | 419 | 234 | 653 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterPajek.java | UIExporterPajek | setup | class UIExporterPajek implements ExporterUI {
private final ExporterPajekSettings settings = new ExporterPajekSettings();
private UIExporterPajekPanel panel;
private ExporterPajek exporterPajek;
@Override
public void setup(Exporter exporter) {<FILL_FUNCTION_BODY>}
@Override
public void un... |
exporterPajek = (ExporterPajek) exporter;
settings.load(exporterPajek);
if (panel != null) {
panel.setup(exporterPajek);
}
| 516 | 58 | 574 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterPajekPanel.java | UIExporterPajekPanel | initComponents | class UIExporterPajekPanel extends javax.swing.JPanel {
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JCheckBox edgeWeightCheckbox;
private javax.swing.JLabel labelExport;
private javax.swing.JCheckBox positionExportCheckbox;
// End of variables declaration//GEN-... |
labelExport = new javax.swing.JLabel();
positionExportCheckbox = new javax.swing.JCheckBox();
edgeWeightCheckbox = new javax.swing.JCheckBox();
labelExport.setText(org.openide.util.NbBundle
.getMessage(UIExporterPajekPanel.class, "UIExporterPajekPanel.labelExport.text"));... | 374 | 610 | 984 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterSpreadsheet.java | ExporterSpreadsheetSettings | load | class ExporterSpreadsheetSettings extends AbstractExporterSettings {
// Preference names
private final static String NORMALIZE = "Spreadsheet_normalize";
private final static String EXPORT_COLORS = "Spreadsheet_exportColors";
private final static String EXPORT_POSITION = "Spreadsheet_ex... |
exporterSpreadsheet.setNormalize(get(NORMALIZE, DEFAULT.isNormalize()));
exporterSpreadsheet.setExportColors(get(EXPORT_COLORS, DEFAULT.isExportColors()));
exporterSpreadsheet.setExportAttributes(get(EXPORT_ATTRIBUTES, DEFAULT.isExportAttributes()));
exporterSpreadsheet.... | 644 | 459 | 1,103 | <no_super_class> |
gephi_gephi | gephi/modules/ExportPluginUI/src/main/java/org/gephi/ui/exporter/plugin/UIExporterVNA.java | ExporterVNASettings | save | class ExporterVNASettings extends AbstractExporterSettings {
// Preference names
private final static String EXPORT_EDGE_WEIGHT = "VNA_exportEdgeWeight";
private final static String EXPORT_COORDINATES = "VNA_exportCoordinates";
private final static String EXPORT_SIZE = "VNA_exportSize";
... |
put(EXPORT_COLOR, exporter.isExportColor());
put(EXPORT_COORDINATES, exporter.isExportCoords());
put(EXPORT_EDGE_WEIGHT, exporter.isExportEdgeWeight());
put(EXPORT_SHORT_LABEL, exporter.isExportShortLabel());
put(EXPORT_SIZE, exporter.isExportSize());
... | 411 | 135 | 546 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersAPI/src/main/java/org/gephi/filters/api/Range.java | Range | equals | class Range {
private final Number lowerNumber;
private final Number upperNumber;
private Number min;
private Number max;
private boolean leftInclusive = true;
private boolean rightInclusive = true;
private Number[] values;
public Range(Number lowerBound, Number upperBound) {
l... |
if (obj == null) {
return false;
}
if (getClass() != obj.getClass()) {
return false;
}
final Range other = (Range) obj;
if (this.lowerNumber != other.lowerNumber &&
(this.lowerNumber == null || !this.lowerNumber.equals(other.lowerNumbe... | 1,417 | 269 | 1,686 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersAPI/src/main/java/org/gephi/filters/spi/Category.java | Category | equals | class Category {
private final String name;
private final Icon icon;
private final Category parent;
public Category(String name) {
this(name, null, null);
}
public Category(String name, Icon icon) {
this(name, icon, null);
}
public Category(String name, Icon icon, Cat... |
if (this == obj) {
return true;
}
if (obj instanceof Category) {
Category cat = (Category) obj;
return cat.icon == icon && cat.name.equals(name) && (cat.parent == parent || cat.parent.equals(parent));
}
return false;
| 445 | 80 | 525 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersAPI/src/main/java/org/gephi/filters/spi/FilterProperty.java | FilterProperty | createProperty | class FilterProperty {
protected PropertySupport.Reflection property;
protected Filter filter;
protected PropertyExecutor propertyExecutor;
FilterProperty(Filter filter) {
this.filter = filter;
propertyExecutor = Lookup.getDefault().lookup(PropertyExecutor.class);
}
/**
*... |
final FilterProperty filterProperty = new FilterProperty(filter);
PropertySupport.Reflection property = new PropertySupport.Reflection(filter, valueType, getMethod, setMethod);
property.setName(propertyName);
filterProperty.property = property;
return filterProperty;
| 1,148 | 70 | 1,218 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/AbstractQueryImpl.java | AbstractQueryImpl | getLeaves | class AbstractQueryImpl implements Query {
protected List<AbstractQueryImpl> children;
protected Query parent;
protected Graph result;
public AbstractQueryImpl() {
this.children = new ArrayList<>();
}
@Override
public abstract int getChildrenSlotsCount();
@Override
public... |
ArrayList<AbstractQueryImpl> leaves = new ArrayList<>();
Deque<Query> stack = new ArrayDeque<>();
stack.add(this);
while (!stack.isEmpty()) {
AbstractQueryImpl query = (AbstractQueryImpl) stack.pop();
if (query.children.size() > 0) {
stack.addAll(... | 927 | 131 | 1,058 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/AttributeColumnPropertyEditor.java | AttributeColumnPropertyEditor | getAsText | class AttributeColumnPropertyEditor extends PropertyEditorSupport {
private Column column;
private GraphModel model;
@Override
public Object getValue() {
return column;
}
@Override
public void setValue(Object value) {
this.column = (Column) value;
}
@Override
... |
if (column != null) {
if (AttributeUtils.isNodeColumn(column)) {
return "NODE*-*" + column.getId() + "*-*" + column.getTypeClass().getName();
} else {
return "EDGE*-*" + column.getId() + "*-*" + column.getTypeClass().getName();
}
}
... | 249 | 100 | 349 | <methods>public void <init>() ,public void <init>(java.lang.Object) ,public synchronized void addPropertyChangeListener(java.beans.PropertyChangeListener) ,public void firePropertyChange() ,public java.lang.String getAsText() ,public java.awt.Component getCustomEditor() ,public java.lang.String getJavaInitializationStr... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/FilterAutoRefreshor.java | FilterAutoRefreshor | setRunning | class FilterAutoRefreshor extends Thread {
private static final int TIMER = 1000;
private final GraphModel graphModel;
private final FilterModelImpl filterModel;
private GraphObserver observer;
private boolean running = true;
public FilterAutoRefreshor(FilterModelImpl filterModel, GraphModel g... |
this.running = running;
if (!running) {
if (observer != null && !observer.isDestroyed()) {
observer.destroy();
observer = null;
}
}
| 424 | 56 | 480 | <methods>public void <init>() ,public void <init>(java.lang.Runnable) ,public void <init>(java.lang.String) ,public void <init>(java.lang.ThreadGroup, java.lang.Runnable) ,public void <init>(java.lang.ThreadGroup, java.lang.String) ,public void <init>(java.lang.Runnable, java.lang.String) ,public void <init>(java.lang.... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/FilterLibraryImpl.java | FilterLibraryImpl | buildBuildersMap | class FilterLibraryImpl implements FilterLibrary {
private final Workspace workspace;
private final AbstractLookup lookup;
private final InstanceContent content;
private final Map<Class<? extends Filter>, FilterBuilder> buildersMap;
public FilterLibraryImpl(Workspace workspace) {
this.work... |
for (FilterBuilder builder : lookup.lookupAll(FilterBuilder.class)) {
try {
Filter f = builder.getFilter(workspace);
buildersMap.put(f.getClass(), builder);
builder.destroy(f);
} catch (Exception e) {
}
}
for (... | 510 | 181 | 691 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/FilterModelImpl.java | FilterModelImpl | setSubQuery | class FilterModelImpl implements FilterModel, Model {
private final FilterLibraryImpl filterLibraryImpl;
private final LinkedList<Query> queries;
private final GraphModel graphModel;
private final Workspace workspace;
private final FilterAutoRefreshor autoRefreshor;
private FilterThread filterT... |
updateParameters(subQuery);
//Clean
queries.remove(subQuery);
if (subQuery.getParent() != null) {
((AbstractQueryImpl) subQuery.getParent()).removeSubQuery(subQuery);
}
if (subQuery == currentQuery) {
currentQuery = ((AbstractQueryImpl) query).ge... | 1,880 | 140 | 2,020 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/FilterQueryImpl.java | FilterQueryImpl | updateParameters | class FilterQueryImpl extends AbstractQueryImpl {
private final FilterBuilder builder;
private final Filter filter;
private Parameters[] parameters;
private String name;
public FilterQueryImpl(FilterBuilder filterBuilder, Filter filter) {
this.filter = filter;
this.builder = filter... |
FilterProperty[] properties = filter.getProperties();
parameters = new Parameters[properties == null ? 0 : properties.length];
if (properties != null) {
for (int i = 0; i < properties.length; i++) {
parameters[i] = new Parameters(i, properties[i].getValue());
... | 416 | 88 | 504 | <methods>public void <init>() ,public void addSubQuery(org.gephi.filters.api.Query) ,public org.gephi.filters.AbstractQueryImpl copy() ,public org.gephi.filters.AbstractQueryImpl getChildAt(int) ,public org.gephi.filters.api.Query[] getChildren() ,public int getChildrenCount() ,public abstract int getChildrenSlotsCount... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/FilterThread.java | FilterThread | run | class FilterThread extends Thread {
private final FilterModelImpl model;
private final AtomicReference<AbstractQueryImpl> rootQuery;
private final Object lock = new Object();
private final boolean filtering;
ConcurrentHashMap<String, PropertyModifier> modifiersMap;
private boolean running = tru... |
while (running) {
AbstractQueryImpl q;
while ((q = rootQuery.getAndSet(null)) == null && running) {
try {
synchronized (this.lock) {
lock.wait();
}
} catch (InterruptedException ex) {
... | 776 | 513 | 1,289 | <methods>public void <init>() ,public void <init>(java.lang.Runnable) ,public void <init>(java.lang.String) ,public void <init>(java.lang.ThreadGroup, java.lang.Runnable) ,public void <init>(java.lang.ThreadGroup, java.lang.String) ,public void <init>(java.lang.Runnable, java.lang.String) ,public void <init>(java.lang.... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/GenericPropertyEditor.java | GenericPropertyEditor | setAsText | class GenericPropertyEditor extends PropertyEditorSupport {
private Object val;
@Override
public Object getValue() {
return val;
}
@Override
public void setValue(Object value) {
this.val = value;
}
@Override
public String getAsText() {
if (val != null) {
... |
if (!text.equals("null")) {
ByteArrayInputStream bis = null;
ObjectInputStream ois = null;
try {
bis = new ByteArrayInputStream(Base64.decodeBase64(text));
ois = new ObjectInputStream(bis);
val = ois.readObject();
}... | 348 | 179 | 527 | <methods>public void <init>() ,public void <init>(java.lang.Object) ,public synchronized void addPropertyChangeListener(java.beans.PropertyChangeListener) ,public void firePropertyChange() ,public java.lang.String getAsText() ,public java.awt.Component getCustomEditor() ,public java.lang.String getJavaInitializationStr... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/OperatorQueryImpl.java | OperatorQueryImpl | getName | class OperatorQueryImpl extends AbstractQueryImpl {
private final Operator operator;
private boolean simple = false; //Simple when children are only NodeFilter/EdgeFilter leaves
private String customName = null;
public OperatorQueryImpl(Operator predicate) {
this.operator = predicate;
}
... |
if (customName != null) {
return customName;
}
return operator.getName();
| 311 | 30 | 341 | <methods>public void <init>() ,public void addSubQuery(org.gephi.filters.api.Query) ,public org.gephi.filters.AbstractQueryImpl copy() ,public org.gephi.filters.AbstractQueryImpl getChildAt(int) ,public org.gephi.filters.api.Query[] getChildren() ,public int getChildrenCount() ,public abstract int getChildrenSlotsCount... |
gephi_gephi | gephi/modules/FiltersImpl/src/main/java/org/gephi/filters/RangePropertyEditor.java | RangePropertyEditor | setAsText | class RangePropertyEditor extends PropertyEditorSupport {
private Range range;
@Override
public Object getValue() {
return range;
}
@Override
public void setValue(Object value) {
this.range = (Range) value;
}
@Override
public String getAsText() {
if (range... |
if (!text.equals("null")) {
String[] arr = text.split(" - ");
if (arr[0].equals("Float")) {
range = new Range(Float.parseFloat(arr[1]), Float.parseFloat(arr[2]));
} else if (arr[0].equals("Double")) {
range = new Range(Double.parseDouble(arr[1... | 163 | 283 | 446 | <methods>public void <init>() ,public void <init>(java.lang.Object) ,public synchronized void addPropertyChangeListener(java.beans.PropertyChangeListener) ,public void firePropertyChange() ,public java.lang.String getAsText() ,public java.awt.Component getCustomEditor() ,public java.lang.String getJavaInitializationStr... |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/AbstractFilter.java | AbstractFilter | addProperty | class AbstractFilter implements Filter {
protected final String name;
protected final List<FilterProperty> properties;
public AbstractFilter(String name) {
this.name = name;
this.properties = new ArrayList<>();
}
@Override
public String getName() {
return n... |
try {
properties.add(FilterProperty.createProperty(this, clazz, name));
} catch (NoSuchMethodException ex) {
Logger.getLogger("").log(Level.SEVERE, "Error while creating '" + name + "' property", ex);
}
| 162 | 77 | 239 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/attribute/AttributeEqualBuilder.java | EqualNumberFilter | getValues | class EqualNumberFilter<K extends Element> extends AbstractAttributeFilter<K>
implements RangeFilter {
private Number match;
private Range range;
public EqualNumberFilter(Column column) {
super(NbBundle.getMessage(AttributeEqualBuilder.class, "AttributeEqualBuilder.n... |
List<Number> vals = new ArrayList<>();
if (AttributeUtils.isNodeColumn(column)) {
for (Element n : graph.getNodes()) {
Object val = n.getAttribute(column, graph.getView());
if (val != null) {
vals.add((Number)... | 639 | 185 | 824 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/attribute/AttributeNonNullBuilder.java | AttributeNonNullBuilder | getBuilders | class AttributeNonNullBuilder implements CategoryBuilder {
private final static Category NONNULL = new Category(
NbBundle.getMessage(AttributeEqualBuilder.class, "AttributeNonNullBuilder.name"),
null,
FilterLibrary.ATTRIBUTES);
@Override
public Category getCategory() {
retu... |
List<FilterBuilder> builders = new ArrayList<>();
GraphModel am = Lookup.getDefault().lookup(GraphController.class).getGraphModel(workspace);
for (Column col : am.getNodeTable()) {
if (!col.isProperty()) {
AttributeNonNullFilterBuilder b = new AttributeNonNullFilterB... | 592 | 177 | 769 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/attribute/AttributeRangeBuilder.java | AttributeRangeFilter | getValues | class AttributeRangeFilter<K extends Element> extends AbstractAttributeFilter<K>
implements RangeFilter {
private Range range;
public AttributeRangeFilter(Column column) {
super(NbBundle.getMessage(AttributeRangeBuilder.class, "AttributeRangeBuilder.name"),
column);... |
List<Number> vals = new ArrayList<>();
if (AttributeUtils.isNodeColumn(column)) {
for (Element n : graph.getNodes()) {
Object val = n.getAttribute(column, graph.getView());
if (val != null) {
vals.add((Number) val);... | 458 | 167 | 625 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/attribute/ComparableArrayConverter.java | ComparableArrayConverter | convert | class ComparableArrayConverter {
private ComparableArrayConverter() {
}
@SuppressWarnings("rawtypes")
public static Comparable[] convert(Object[] objectArray) {<FILL_FUNCTION_BODY>}
@SuppressWarnings("rawtypes")
public static Comparable[] convert(List<? extends Object> objectList) {
C... |
Comparable[] comparableArray = new Comparable[objectArray.length];
for (int index = 0; index < comparableArray.length; index++) {
comparableArray[index] = (Comparable) objectArray[index];
}
return comparableArray;
| 175 | 70 | 245 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/attribute/ListAttributeContainsBuilder.java | AttributeContainsFilter | init | class AttributeContainsFilter<K extends Element> extends AbstractAttributeFilter<K> {
private Object match;
public AttributeContainsFilter(Column column) {
super(NbBundle.getMessage(AttributeEqualBuilder.class, "AttributeContainsBuilder.name"),
column);
addProp... |
if (AttributeUtils.isNodeColumn(column)) {
return graph.getNodeCount() != 0;
} else if (AttributeUtils.isEdgeColumn(column)) {
return graph.getEdgeCount() != 0;
}
return true;
| 480 | 67 | 547 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/dynamic/DynamicRangeBuilder.java | DynamicRangeFilter | filter | class DynamicRangeFilter implements ComplexFilter {
private final TimeRepresentation timeRepresentation;
private FilterProperty[] filterProperties;
private Interval visibleInterval;
private Range range = new Range(Double.NEGATIVE_INFINITY, Double.POSITIVE_INFINITY);
private bool... |
visibleInterval = new Interval(range.getLowerDouble(), range.getUpperDouble());
List<Node> toRemoveNodes = new ArrayList<>();
for (Node n : graph.getNodes()) {
if (!evaluateElement(n)) {
toRemoveNodes.add(n);
}
}
... | 642 | 187 | 829 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/edge/EdgeTypeBuilder.java | EdgeTypeFilter | setEdgeTypeLabel | class EdgeTypeFilter extends AbstractFilter implements EdgeFilter {
private final GraphModel graphModel;
private Integer type;
public EdgeTypeFilter(GraphModel graphModel) {
super(NbBundle.getMessage(EdgeTypeBuilder.class, "EdgeTypeBuilder.name"));
this.graphModel = gra... |
int id = graphModel.getEdgeType(obj);
if (id != -1) {
getProperties()[0].setValue(id);
}
| 343 | 44 | 387 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/edge/EdgeWeightBuilder.java | EdgeWeightFilter | getValues | class EdgeWeightFilter extends AbstractFilter implements RangeFilter, EdgeFilter {
private Range range;
public EdgeWeightFilter() {
super(NbBundle.getMessage(EdgeWeightBuilder.class, "EdgeWeightBuilder.name"));
addProperty(Range.class, "range");
}
@Override
... |
List<Number> values = new ArrayList<>();
for (Edge e : graph.getEdges()) {
double weight = e.getWeight(graph.getView());
values.add(weight);
}
return values.toArray(new Number[0]);
| 262 | 68 | 330 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/edge/MutualEdgeBuilder.java | MutualEdgeFilter | evaluate | class MutualEdgeFilter extends AbstractFilter implements EdgeFilter {
public MutualEdgeFilter() {
super(NbBundle.getMessage(MutualEdgeBuilder.class, "MutualEdgeBuilder.name"));
}
@Override
public boolean init(Graph graph) {
return !graph.isUndirected();
... |
if (edge.isDirected()) {
DirectedGraph directedGraph = (DirectedGraph) graph;
return directedGraph.getMutualEdge(edge) != null;
}
return false;
| 129 | 54 | 183 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/DegreeRangeBuilder.java | DegreeRangeBuilder | getPanel | class DegreeRangeBuilder implements FilterBuilder {
@Override
public Category getCategory() {
return FilterLibrary.TOPOLOGY;
}
@Override
public String getName() {
return NbBundle.getMessage(DegreeRangeBuilder.class, "DegreeRangeBuilder.name");
}
@Override
public Icon g... |
RangeUI ui = Lookup.getDefault().lookup(RangeUI.class);
if (ui != null) {
return ui.getPanel((DegreeRangeFilter) filter);
}
return null;
| 557 | 57 | 614 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/EgoBuilder.java | EgoFilter | filter | class EgoFilter implements ComplexFilter {
private String pattern = "";
private boolean self = true;
private int depth = 1;
@Override
public Graph filter(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbBundle.getMess... |
String str = pattern.toLowerCase();
List<Node> nodes = new ArrayList<>();
for (Node n : graph.getNodes()) {
if (n.getId().toString().toLowerCase().equals(str)) {
nodes.add(n);
} else if ((n.getLabel() != null) && n.getLabel().toLo... | 340 | 375 | 715 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/GiantComponentBuilder.java | GiantComponentFilter | evaluate | class GiantComponentFilter implements NodeFilter {
private static final String GIANT_COMPONENT_FILTER = "giantcomponent";
private int componentId;
private Column column;
public GiantComponentFilter() {
}
@Override
public boolean init(Graph graph) {
... |
Integer component = (Integer) node.getAttribute(column);
if (component != null) {
return component.equals(componentId);
}
return false;
| 392 | 46 | 438 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/HasSelfLoopBuilder.java | HasSelfLoopFilter | evaluate | class HasSelfLoopFilter implements NodeFilter {
public HasSelfLoopFilter() {
}
@Override
public boolean init(Graph graph) {
return true;
}
@Override
public boolean evaluate(Graph graph, Node node) {<FILL_FUNCTION_BODY>}
@Override
pu... |
EdgeIterable edgeIterable = graph.getEdges(node);
for (Edge e : edgeIterable) {
if (e.isSelfLoop()) {
edgeIterable.doBreak();
return true;
}
}
return false;
| 161 | 68 | 229 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/InDegreeRangeBuilder.java | InDegreeRangeFilter | getValues | class InDegreeRangeFilter extends AbstractFilter implements RangeFilter, NodeFilter {
private Range range;
public InDegreeRangeFilter() {
super(NbBundle.getMessage(InDegreeRangeBuilder.class, "InDegreeRangeBuilder.name"));
//Add property
addProperty(Range.class, "r... |
DirectedGraph dgraph = (DirectedGraph) graph;
List<Integer> values = new ArrayList<>(dgraph.getNodeCount());
for (Node n : dgraph.getNodes()) {
int degree = dgraph.getInDegree(n);
values.add(degree);
}
return values.toArray(new... | 293 | 91 | 384 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/KCoreBuilder.java | KCoreFilter | getProperties | class KCoreFilter implements ComplexFilter {
private FilterProperty[] filterProperties;
private Integer k = 1;
@Override
public Graph filter(Graph graph) {
int removed = 0;
do {
removed = 0;
for (Node n : graph.getNodes().toArray(... |
if (filterProperties == null) {
filterProperties = new FilterProperty[0];
try {
filterProperties = new FilterProperty[] {
FilterProperty.createProperty(this, Integer.class, "k"),};
} catch (Exception ex) {
... | 239 | 88 | 327 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/MutualDegreeRangeBuilder.java | MutualDegreeRangeFilter | getValues | class MutualDegreeRangeFilter extends AbstractFilter implements RangeFilter, NodeFilter {
private Range range;
public MutualDegreeRangeFilter() {
super(NbBundle.getMessage(MutualDegreeRangeFilter.class, "MutualDegreeRangeBuilder.name"));
//Add property
addProperty(... |
DirectedGraph dgraph = (DirectedGraph) graph;
List<Integer> values = new ArrayList<>(dgraph.getNodeCount());
for (Node n : dgraph.getNodes()) {
int degree = 0;
for (Edge e : dgraph.getOutEdges(n)) {
if (dgraph.getMutualEdge(e) != n... | 347 | 130 | 477 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/NeighborsBuilder.java | NeighborsFilter | filter | class NeighborsFilter implements ComplexFilter {
private boolean self = true;
private int depth = 1;
@Override
public Graph filter(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbBundle.getMessage(NeighborsBuilder.class, "Ne... |
Set<Node> result = new HashSet<>();
Collection<Node> nodes = graph.getNodes().toCollection();
Set<Node> neighbours = new HashSet<>(nodes);
//Put all neighbors into result
Graph mainGraph = graph.getModel().getGraph();
for (int i = 0; i < depth;... | 282 | 385 | 667 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/graph/OutDegreeRangeBuilder.java | OutDegreeRangeFilter | getValues | class OutDegreeRangeFilter extends AbstractFilter implements RangeFilter, NodeFilter {
private Range range;
public OutDegreeRangeFilter() {
super(NbBundle.getMessage(OutDegreeRangeBuilder.class, "OutDegreeRangeBuilder.name"));
//Add property
addProperty(Range.class... |
DirectedGraph dgraph = (DirectedGraph) graph;
List<Integer> values = new ArrayList<>(dgraph.getNodeCount());
for (Node n : dgraph.getNodes()) {
int degree = dgraph.getOutDegree(n);
values.add(degree);
}
return values.toArray(ne... | 293 | 91 | 384 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/operator/INTERSECTIONBuilder.java | IntersectionOperator | filter | class IntersectionOperator implements Operator {
@Override
public int getInputCount() {
return Integer.MAX_VALUE;
}
@Override
public String getName() {
return NbBundle.getMessage(INTERSECTIONBuilder.class, "INTERSECTIONBuilder.name");
}
... |
List<NodeFilter> nodeFilters = new ArrayList<>();
List<EdgeFilter> edgeFilters = new ArrayList<>();
for (Filter f : filters) {
if (f instanceof NodeFilter) {
nodeFilters.add((NodeFilter) f);
} else if (f instanceof EdgeFilter) {
... | 206 | 517 | 723 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/operator/MASKBuilderEdge.java | MaskEdgeOperator | getProperties | class MaskEdgeOperator implements Operator {
private EdgesOptions option = EdgesOptions.ANY;
private FilterProperty[] filterProperties;
@Override
public int getInputCount() {
return 1;
}
@Override
public String getName() {
return NbBundl... |
if (filterProperties == null) {
filterProperties = new FilterProperty[0];
try {
filterProperties = new FilterProperty[] {
FilterProperty.createProperty(this, String.class, "option")
};
} catch (E... | 834 | 90 | 924 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/operator/NOTBuilderEdge.java | NotOperatorEdge | filter | class NotOperatorEdge implements Operator {
@Override
public int getInputCount() {
return 1;
}
@Override
public String getName() {
return NbBundle.getMessage(NOTBuilderEdge.class, "NOTBuilderEdge.name");
}
@Override
public Filter... |
if (graphs.length > 1) {
throw new IllegalArgumentException("Not Filter accepts a single graph in parameter");
}
Graph graph = graphs[0];
Graph mainGraph = graph.getView().getGraphModel().getGraph();
for (Edge e : mainGraph.getEdges()) {
... | 311 | 204 | 515 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/operator/NOTBuilderNode.java | NOTOperatorNode | filter | class NOTOperatorNode implements Operator {
@Override
public int getInputCount() {
return 1;
}
@Override
public String getName() {
return NbBundle.getMessage(NOTBuilderNode.class, "NOTBuilderNode.name");
}
@Override
public Filter... |
if (graphs.length > 1) {
throw new IllegalArgumentException("Not Filter accepts a single graph in parameter");
}
Graph graph = graphs[0];
Graph mainGraph = graph.getView().getGraphModel().getGraph();
for (Node n : mainGraph.getNodes().toArray(... | 307 | 247 | 554 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/operator/UNIONBuilder.java | UnionOperator | filter | class UnionOperator implements Operator {
@Override
public int getInputCount() {
return Integer.MAX_VALUE;
}
@Override
public String getName() {
return NbBundle.getMessage(UNIONBuilder.class, "UNIONBuilder.name");
}
@Override
pub... |
List<NodeFilter> nodeFilters = new ArrayList<>();
List<EdgeFilter> edgeFilters = new ArrayList<>();
for (Filter f : filters) {
if (f instanceof NodeFilter) {
nodeFilters.add((NodeFilter) f);
} else if (f instanceof EdgeFilter) {
... | 201 | 553 | 754 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/partition/IntraEdgesBuilder.java | IntraEdgesFilterBuilder | getPanel | class IntraEdgesFilterBuilder implements FilterBuilder {
private final Partition partition;
public IntraEdgesFilterBuilder(Partition partition) {
this.partition = partition;
}
@Override
public Category getCategory() {
return INTRA_EDGES;
}
... |
PartitionUI ui = Lookup.getDefault().lookup(PartitionUI.class);
if (ui != null) {
return ui.getPanel((PartitionFilter) filter);
}
return null;
| 252 | 55 | 307 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/partition/PartitionBuilder.java | PartitionFilterBuilder | getFilter | class PartitionFilterBuilder implements FilterBuilder {
private final Partition partition;
public PartitionFilterBuilder(Partition partition) {
this.partition = partition;
}
@Override
public Category getCategory() {
return PARTITION;
}
... |
AppearanceModel am = Lookup.getDefault().lookup(AppearanceController.class).getModel(workspace);
if (AttributeUtils.isNodeColumn(partition.getColumn())) {
return new NodePartitionFilter(am, partition);
} else {
return new EdgePartitionFilter(am, parti... | 343 | 81 | 424 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPlugin/src/main/java/org/gephi/filters/plugin/partition/PartitionCountBuilder.java | PartitionCountBuilder | getBuilders | class PartitionCountBuilder implements CategoryBuilder {
private final static Category PARTITION_COUNT = new Category(
NbBundle.getMessage(PartitionCountBuilder.class, "PartitionCountBuilder.name"),
null,
FilterLibrary.ATTRIBUTES);
@Override
public Category getCategory() {
... |
List<FilterBuilder> builders = new ArrayList<>();
GraphModel gm = Lookup.getDefault().lookup(GraphController.class).getGraphModel(workspace);
AppearanceModel am = Lookup.getDefault().lookup(AppearanceController.class).getModel(workspace);
//Force refresh
am.getNodeFunctions();
... | 1,144 | 292 | 1,436 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/JQuickHistogram.java | JQuickHistogram | addData | class JQuickHistogram {
private final boolean inclusive = true;
private int constraintHeight = 0;
private int constraintWidth = 0;
private JPanel panel;
//Data
private List<Double> data;
private Double minValue;
private Double maxValue;
private Double minRange;
private Double ma... |
if (data instanceof Double) {
addData((Double) data);
} else if (data instanceof Integer) {
addData(((Integer) data).doubleValue());
} else if (data instanceof Float) {
addData(((Float) data).doubleValue());
} else if (data instanceof Long) {
... | 1,869 | 97 | 1,966 | <no_super_class> |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/attribute/EqualBooleanPanel.java | EqualBooleanPanel | initComponents | class EqualBooleanPanel extends javax.swing.JPanel implements ActionListener {
private EqualBooleanFilter filter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JToggleButton falseButton;
private javax.swing.ButtonGroup group;
private javax.swing.JToggleButton tru... |
group = new javax.swing.ButtonGroup();
trueButton = new javax.swing.JToggleButton();
falseButton = new javax.swing.JToggleButton();
setOpaque(false);
group.add(trueButton);
trueButton.setText(org.openide.util.NbBundle
.getMessage(EqualBooleanPanel.class, "... | 441 | 178 | 619 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/attribute/EqualStringPanel.java | EqualStringPanel | actionPerformed | class EqualStringPanel extends javax.swing.JPanel implements ActionListener {
private AttributeEqualBuilder.EqualStringFilter filter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JLabel labelPattern;
private javax.swing.JButton okButton;
private javax.swing.JChe... |
FilterProperty pattern = filter.getProperties()[1];
FilterProperty useRegex = filter.getProperties()[2];
try {
if (pattern.getValue() == null || !pattern.getValue().equals(textField.getText())) {
pattern.setValue(textField.getText());
}
if (us... | 1,430 | 148 | 1,578 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/attribute/ListContainsPanel.java | ListContainsPanel | initComponents | class ListContainsPanel extends javax.swing.JPanel implements ActionListener {
private ListAttributeContainsBuilder.AttributeContainsFilter filter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JLabel labelPattern;
private javax.swing.JButton okButton;
private ja... |
java.awt.GridBagConstraints gridBagConstraints;
labelPattern = new javax.swing.JLabel();
textField = new javax.swing.JTextField();
okButton = new javax.swing.JButton();
setOpaque(false);
setLayout(new java.awt.GridBagLayout());
labelPattern.setText(org.openide... | 475 | 496 | 971 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/dynamic/DynamicRangePanel.java | DynamicRangePanel | setup | class DynamicRangePanel extends javax.swing.JPanel {
private final String OPEN;
private final String CLOSE;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JCheckBox keepEmptyCheckbox;
private javax.swing.JButton timelineButton;
// End of variables declaration/... |
final BottomComponent bottomComponent = Lookup.getDefault().lookup(BottomComponent.class);
timelineButton.setText(bottomComponent.isVisible() ? CLOSE : OPEN);
timelineButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
... | 650 | 250 | 900 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/edge/EdgeTypePanel.java | EdgeTypePanel | initComponents | class EdgeTypePanel extends javax.swing.JPanel {
private EdgeTypeFilter filter;
private javax.swing.JComboBox comboBox;
/**
* Creates new form EdgeTypePanel
*/
public EdgeTypePanel() {
initComponents();
comboBox.addItemListener(new ItemListener() {
@Override
... |
comboBox = new javax.swing.JComboBox();
setLayout(new java.awt.BorderLayout());
comboBox.setModel(new DefaultComboBoxModel());
add(comboBox, java.awt.BorderLayout.CENTER);
| 297 | 67 | 364 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/graph/EgoPanel.java | EgoPanel | itemStateChanged | class EgoPanel extends javax.swing.JPanel {
private EgoFilter egoFilter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JComboBox depthComboBox;
private javax.swing.JLabel labelDepth;
private javax.swing.JLabel labelNodeId;
private javax.swing.JTextField nodeI... |
int depth = -1;
int index = depthComboBox.getSelectedIndex();
if (index == depthComboBox.getModel().getSize() - 1) {
depth = Integer.MAX_VALUE;
} else {
depth = index + 1;
}
if (!egoF... | 1,766 | 109 | 1,875 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/graph/KCorePanel.java | KCorePanel | setup | class KCorePanel extends javax.swing.JPanel implements ChangeListener {
private KCoreFilter filter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JSpinner degreeSpinner;
// End of variables declaration//GEN-END:variables
public KCorePanel() {
initCompone... |
this.filter = filter;
degreeSpinner.setModel(new javax.swing.SpinnerNumberModel(filter.getK(), 1, null, 1));
degreeSpinner.getModel().addChangeListener(WeakListeners.change(KCorePanel.this, degreeSpinner.getModel()));
| 432 | 76 | 508 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/graph/NeighborsPanel.java | NeighborsPanel | setup | class NeighborsPanel extends javax.swing.JPanel {
private NeighborsFilter neighborsFilter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JComboBox depthComboBox;
private javax.swing.JLabel labelDepth;
private javax.swing.JCheckBox withSelfCheckbox;
// End of ... |
this.neighborsFilter = neighborsFilter;
int depth = neighborsFilter.getDepth();
if (depth == Integer.MAX_VALUE) {
depthComboBox.setSelectedIndex(depthComboBox.getModel().getSize() - 1);
} else {
depthComboBox.setSelectedIndex(depth - 1);
}
withS... | 1,141 | 109 | 1,250 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/graph/RangePanel.java | RangePanel | propertyChange | class RangePanel extends javax.swing.JPanel {
private final JQuickHistogram histogram;
//Info
private Object[] values;
private RangeFilter filter;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JPanel histogramPanel;
private javax.swing.JPanel rangeSliderP... |
try {
if (evt.getPropertyName().equals(JRangeSliderPanel.LOWER_BOUND)) {
Range oldRange = (Range) filter.getRangeProperty().getValue();
final Range newRange = new Range(rangeSlider.getRan... | 1,556 | 397 | 1,953 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/operator/MASKEdgePanel.java | MASKEdgePanel | initComponents | class MASKEdgePanel extends javax.swing.JPanel implements ActionListener {
private MASKBuilderEdge.MaskEdgeOperator operator;
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JRadioButton anyButton;
private javax.swing.JRadioButton bothButton;
private javax.swing.Bu... |
java.awt.GridBagConstraints gridBagConstraints;
group = new javax.swing.ButtonGroup();
sourceButton = new javax.swing.JRadioButton();
targetButton = new javax.swing.JRadioButton();
anyButton = new javax.swing.JRadioButton();
bothButton = new javax.swing.JRadioButton();
... | 671 | 729 | 1,400 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/FiltersPluginUI/src/main/java/org/gephi/ui/filters/plugin/partition/PartitionPanel.java | PartWrapper | toString | class PartWrapper {
private static final NumberFormat FORMATTER = NumberFormat.getPercentInstance();
private final Object part;
private final float percentage;
private final PaletteIcon icon;
private final PaletteIcon disabledIcon;
private boolean enabled = false;
... |
String displayName = part == null ? "null" :
part.getClass().isArray() ? AttributeUtils.printArray(part) : part.toString();
if (flattened) {
return displayName;
}
String percentageStr = FORMATTER.format(percentage / 100f);
retu... | 314 | 96 | 410 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/GeneratorPlugin/src/main/java/org/gephi/io/generator/plugin/DynamicGraph.java | DynamicGraph | generate | class DynamicGraph implements Generator {
protected int numberOfNodes = 50;
protected double wiringProbability = 0.05;
@Override
public void generate(ContainerLoader container) {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbBundle.getMessage(DynamicGraph.class, "D... |
Random random = new Random();
double start = 2000.0;
double end = 2015.0;
double tick = 1.0;
ColumnDraft col = container.addNodeColumn("score", Integer.class, true);
container.setTimeRepresentation(TimeRepresentation.TIMESTAMP);
NodeDraft[] nodeArray = new NodeD... | 168 | 944 | 1,112 | <no_super_class> |
gephi_gephi | gephi/modules/GeneratorPlugin/src/main/java/org/gephi/io/generator/plugin/MultiGraph.java | MultiGraph | generate | class MultiGraph implements Generator {
protected int numberOfNodes = 50;
protected double wiringProbability = 0.05;
protected int numberOfEdgeTypes = 3;
@Override
public void generate(ContainerLoader container) {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbB... |
NodeDraft[] nodeArray = new NodeDraft[numberOfNodes];
for (int i = 0; i < numberOfNodes; i++) {
NodeDraft nodeDraft = container.factory().newNodeDraft("n" + i);
container.addNode(nodeDraft);
nodeArray[i] = nodeDraft;
}
String[] edgeTypes = new Stri... | 178 | 575 | 753 | <no_super_class> |
gephi_gephi | gephi/modules/GeneratorPlugin/src/main/java/org/gephi/io/generator/plugin/RandomGraph.java | RandomGraph | generate | class RandomGraph implements Generator {
protected int numberOfNodes = 50;
protected double wiringProbability = 0.05;
protected ProgressTicket progress;
protected boolean cancel = false;
@Override
public void generate(ContainerLoader container) {<FILL_FUNCTION_BODY>}
@Override
public ... |
int max = numberOfNodes;
if (wiringProbability > 0) {
max += numberOfNodes - 1;
}
Progress.start(progress, max);
int progressUnit = 0;
Random random = new Random();
NodeDraft[] nodeArray = new NodeDraft[numberOfNodes];
for (int i = 0; i < nu... | 389 | 358 | 747 | <no_super_class> |
gephi_gephi | gephi/modules/GeneratorPluginUI/src/main/java/org/gephi/ui/generator/plugin/RandomGraphPanel.java | RandomGraphPanel | initComponents | class RandomGraphPanel extends javax.swing.JPanel {
/**
* Creates new form RandomGraphPanel
*/
public RandomGraphPanel() {
initComponents();
}
public static ValidationPanel createValidationPanel(RandomGraphPanel innerPanel) {
ValidationPanel validationPanel = new ValidationPa... |
nodeLabel = new javax.swing.JLabel();
edgeLabel = new javax.swing.JLabel();
nodeField = new javax.swing.JTextField();
edgeField = new javax.swing.JTextField();
nodeLabel.setText(
org.openide.util.NbBundle.getMessage(RandomGraphPanel.class, "RandomGraphPanel.nodeLab... | 516 | 792 | 1,308 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/GeneratorPluginUI/src/main/java/org/gephi/ui/generator/plugin/RandomGraphUIImpl.java | RandomGraphUIImpl | getPanel | class RandomGraphUIImpl implements RandomGraphUI {
private RandomGraphPanel panel;
private RandomGraph randomGraph;
public RandomGraphUIImpl() {
}
@Override
public JPanel getPanel() {<FILL_FUNCTION_BODY>}
@Override
public void setup(Generator generator) {
this.randomGraph = (... |
if (panel == null) {
panel = new RandomGraphPanel();
}
return RandomGraphPanel.createValidationPanel(panel);
| 246 | 37 | 283 | <no_super_class> |
gephi_gephi | gephi/modules/GraphAPI/src/main/java/org/gephi/graph/GraphControllerImpl.java | GraphControllerImpl | getGraphModel | class GraphControllerImpl implements GraphController {
@Override
public GraphModel getGraphModel() {<FILL_FUNCTION_BODY>}
@Override
public synchronized GraphModel getGraphModel(Workspace workspace) {
GraphModel model = workspace.getLookup().lookup(GraphModel.class);
if (model == null) ... |
Workspace currentWorkspace = Lookup.getDefault().lookup(ProjectController.class).getCurrentWorkspace();
if (currentWorkspace == null) {
return null;
}
return getGraphModel(currentWorkspace);
| 193 | 60 | 253 | <no_super_class> |
gephi_gephi | gephi/modules/GraphAPI/src/main/java/org/gephi/graph/GraphPersistenceProvider.java | GraphPersistenceProvider | readBytes | class GraphPersistenceProvider implements WorkspaceBytesPersistenceProvider {
private static final int GRAPHSTORE_SERIALIZATION_GRAPHMODEL_CONFIG_ID = 205;
@Override
public void writeBytes(DataOutputStream stream, Workspace workspace) {
GraphModel model = workspace.getLookup().lookup(GraphModel.cl... |
GraphModel model = workspace.getLookup().lookup(GraphModel.class);
try {
//Detect if the serialized graphstore declares its own version:
stream.mark(1);
int firstFieldType = stream.readUnsignedByte();
stream.reset();
if (firstFieldType == GRA... | 219 | 271 | 490 | <no_super_class> |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/api/AbstractDatabase.java | AbstractDatabase | setSQLDriver | class AbstractDatabase implements Database {
//Database attributes
protected String name;
protected String driver;
protected String host;
protected int port;
protected String username;
protected String passwd;
protected String DBName;
//PropertiesAssociations
protected Propertie... |
if (driver != null) {
this.driver = driver.getPrefix();
}
| 464 | 27 | 491 | <no_super_class> |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/api/Issue.java | Issue | toString | class Issue {
private final Throwable throwable;
private final String message;
private final Level level;
/**
* Constructs a new issue with a throwable and a level.
* <p>
* The message is set based on throwable.
*
* @param throwable throwable
* @param level level
... |
return "Issue{" + "message=" + message + ", level=" + level + '}';
| 582 | 28 | 610 | <no_super_class> |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/api/PropertiesAssociations.java | PropertiesAssociations | getEdgeProperty | class PropertiesAssociations implements Serializable {
private final Map<String, NodeProperties> titleToNodeProperty = new HashMap<>();
private final Map<String, EdgeProperties> titleToEdgeProperty = new HashMap<>();
public void addNodePropertyAssociation(NodeProperties property, String title) {
t... |
if (titleToEdgeProperty.containsKey(title)) {
return titleToEdgeProperty.get(title);
} else {
return null;
}
| 534 | 43 | 577 | <no_super_class> |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/impl/ColumnDraftImpl.java | ColumnDraftImpl | getResolvedTypeClass | class ColumnDraftImpl implements ColumnDraft {
protected final int index;
protected final String id;
protected final Class typeClass;
protected final boolean dynamic;
protected String title;
protected Object defaultValue;
public ColumnDraftImpl(String id, int index, boolean dynamic, Class ... |
TimeRepresentation timeRepresentation = container.getTimeRepresentation();
Class typeClassFinal = typeClass;
//Get final dynamic type:
if (dynamic && !TimeSet.class.isAssignableFrom(typeClassFinal) &&
!TimeMap.class.isAssignableFrom(typeClassFinal)) {
if (timeRep... | 537 | 160 | 697 | <no_super_class> |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/impl/EdgeDraftImpl.java | EdgeDraftImpl | getValue | class EdgeDraftImpl extends ElementDraftImpl implements EdgeDraft {
//Topology
private NodeDraftImpl source;
private NodeDraftImpl target;
private double weight = 1.0;
private Object type;
private EdgeDirection direction;
public EdgeDraftImpl(ImportContainerImpl container, String id) {
... |
ColumnDraft column = container.getEdgeColumn(key);
if (column != null) {
return getAttributeValue(((ColumnDraftImpl) column).getIndex());
}
return null;
| 814 | 54 | 868 | <methods>public void <init>(org.gephi.io.importer.impl.ImportContainerImpl, java.lang.String) ,public void addInterval(java.lang.String, java.lang.String) ,public void addInterval(double, double) ,public void addIntervals(java.lang.String) ,public void addTimestamp(java.lang.String) ,public void addTimestamp(double) ,p... |
gephi_gephi | gephi/modules/ImportAPI/src/main/java/org/gephi/io/importer/impl/ElementFactoryImpl.java | ElementFactoryImpl | newNodeDraft | class ElementFactoryImpl implements ElementDraft.Factory {
protected final static AtomicInteger NODE_IDS = new AtomicInteger();
protected final static AtomicInteger EDGE_IDS = new AtomicInteger();
protected final ImportContainerImpl container;
protected AtomicInteger nextSequentialNodeId = new AtomicI... |
if (id == null) {
String message = NbBundle.getMessage(ElementFactoryImpl.class, "ElementFactoryException_NullNodeId");
container.getReport().logIssue(new Issue(message, Issue.Level.CRITICAL));
}
return new NodeDraftImpl(container, id, nextSequentialNodeId.getAndIncremen... | 348 | 93 | 441 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/database/EdgeColumns.java | EdgeColumns | getIdValue | class EdgeColumns {
int findIdIndex(final ResultSetMetaData metaData, final PropertiesAssociations properties) throws SQLException {
int result = -1;
for (int i = 1; i <= metaData.getColumnCount(); ++i) {
String columnLabel = metaData.getColumnLabel(i);
PropertiesAssociation... |
if (idColumn == -1) {
return null;
}
return rs.getString(idColumn);
| 284 | 34 | 318 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/database/NodeColumns.java | NodeColumns | getNodeDraft | class NodeColumns {
int findIdIndex(final ResultSetMetaData metaData, final PropertiesAssociations properties) throws SQLException {
int result = -1;
for (int i = 1; i <= metaData.getColumnCount(); ++i) {
String columnLabel = metaData.getColumnLabel(i);
PropertiesAssociation... |
String id = getIdValue(rs, idColumn);
final NodeDraft node;
if (id == null) {
node = factory.newNodeDraft();
} else {
node = factory.newNodeDraft(id);
}
return node;
| 246 | 72 | 318 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/ImporterBuilderDOT.java | ImporterBuilderDOT | getFileTypes | class ImporterBuilderDOT implements FileImporterBuilder {
public static final String IDENTIFER = "dot";
@Override
public FileImporter buildImporter() {
return new ImporterDOT();
}
@Override
public String getName() {
return IDENTIFER;
}
@Override
public FileType[] ... |
FileType ft =
new FileType(new String[] {".dot", ".gv"}, NbBundle.getMessage(getClass(), "fileType_GraphViz_Name"));
return new FileType[] {ft};
| 163 | 55 | 218 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/ImporterTGF.java | ImporterTGF | importData | class ImporterTGF implements FileImporter, LongTask {
//Architecture
private Reader reader;
private ContainerLoader container;
private Report report;
private ProgressTicket progressTicket;
private boolean cancel = false;
@Override
public boolean execute(ContainerLoader container) {
... |
Progress.start(progressTicket); //Progress
List<String> nodes = new ArrayList<>();
List<String> edges = new ArrayList<>();
boolean isNode = true;
for (; reader.ready(); ) {
String line = reader.readLine().trim();
if ("#".equalsIgnoreCase(line)) {
... | 657 | 447 | 1,104 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/ImporterTLP.java | ImporterTLP | walkFile | class ImporterTLP implements FileImporter, LongTask {
//Architecture
private Reader reader;
private ContainerLoader container;
private Report report;
private ProgressTicket progressTicket;
private boolean cancel = false;
@Override
public boolean execute(ContainerLoader container) {
... |
int cptLine = 0;
int state = 0; // 0=topology, 1=properties
while (reader.ready() && !cancel) {
String line = reader.readLine();
if (!isComment(line)) {
String[] tokens = line.split("\\s|\\)");
if (tokens.length > 0) {
... | 665 | 246 | 911 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/ImporterSpreadsheetCSV.java | ImporterSpreadsheetCSV | createParser | class ImporterSpreadsheetCSV extends AbstractImporterSpreadsheet {
protected char fieldDelimiter = ',';
protected Charset charset = StandardCharsets.UTF_8;
@Override
public SheetParser createParserWithoutHeaders() throws IOException {
return createParser(false);
}
@Override
public... |
try {
CSVParser csvParser =
SpreadsheetUtils.configureCSVParser(file, fieldDelimiter, charset, withFirstRecordAsHeader);
return new CSVSheetParser(csvParser);
} catch (Exception ex) {
if (report != null) {
SpreadsheetUtils.logError(rep... | 902 | 127 | 1,029 | <methods>public non-sealed void <init>() ,public boolean cancel() ,public abstract org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser createParser() throws java.io.IOException,public abstract org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser createParserWithoutHeaders() throws java.io.IOExcep... |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/ImporterSpreadsheetCSVBuilder.java | ImporterSpreadsheetCSVBuilder | getFileTypes | class ImporterSpreadsheetCSVBuilder implements FileImporterBuilder {
public static final String IDENTIFER = "spreadsheet_csv";
public static final String[] EXTENSIONS = new String[] {".csv", ".tsv", ".edges"};
@Override
public FileImporter buildImporter() {
return new ImporterSpreadsheetCSV();... |
return new FileType[] {
new FileType(EXTENSIONS, NbBundle.getMessage(getClass(), "fileType_Spreadsheet_Name"))
};
| 226 | 44 | 270 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/ImporterSpreadsheetExcel.java | ImporterSpreadsheetExcel | getAvailableSheetNames | class ImporterSpreadsheetExcel extends AbstractImporterSpreadsheet {
private int sheetIndex = 0;
@Override
public SheetParser createParserWithoutHeaders() throws IOException {
return createParser(false);
}
@Override
public SheetParser createParser() throws IOException {
boolea... |
try (Workbook workbook = WorkbookFactory.create(file)) {
int length = workbook.getNumberOfSheets();
String[] names = new String[length];
for (int i = 0; i < length; i++) {
names[i] = workbook.getSheetName(i);
}
return names;
... | 409 | 133 | 542 | <methods>public non-sealed void <init>() ,public boolean cancel() ,public abstract org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser createParser() throws java.io.IOException,public abstract org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser createParserWithoutHeaders() throws java.io.IOExcep... |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/ImporterSpreadsheetExcelBuilder.java | ImporterSpreadsheetExcelBuilder | isMatchingImporter | class ImporterSpreadsheetExcelBuilder implements FileImporterBuilder {
public static final String IDENTIFER = "spreadsheet_excel";
public static final String[] EXTENSIONS = new String[] {".xls", ".xlsx"};
@Override
public FileImporter buildImporter() {
return new ImporterSpreadsheetExcel();
... |
for (String ext : EXTENSIONS) {
if (fileObject.getExt().equalsIgnoreCase(ext.substring(1))) {
return true;
}
}
return false;
| 213 | 56 | 269 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/SpreadsheetUtils.java | SpreadsheetUtils | configureCSVParser | class SpreadsheetUtils {
public static void logInfo(Report report, String message, SheetParser parser) {
logIssue(report, new Issue(message, Issue.Level.INFO), parser);
}
public static void logWarning(Report report, String message, SheetParser parser) {
logIssue(report, new Issue(message, ... |
if (fieldSeparator == null) {
fieldSeparator = ',';
}
CSVFormat csvFormat = CSVFormat.DEFAULT
.withDelimiter(fieldSeparator)
.withEscape('\\')
.withIgnoreEmptyLines(true)
.withNullString("")
.withIgnoreSurroundingSpaces(tr... | 499 | 393 | 892 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/AbstractImportProcess.java | AbstractImportProcess | parseValue | class AbstractImportProcess implements Closeable {
protected final SpreadsheetGeneralConfiguration generalConfig;
protected final ContainerLoader container;
protected final Report report;
protected final ProgressTicket progressTicket;
protected final SheetParser parser;
protected final Map<Stri... |
try {
return AttributeUtils.parse(value, type);
} catch (Exception e) {
logError(getMessage("AbstractImportProcess.error.parseError", value, type.getSimpleName(), column));
return null;
}
| 1,197 | 63 | 1,260 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/ImportAdjacencyListProcess.java | ImportAdjacencyListProcess | execute | class ImportAdjacencyListProcess extends AbstractImportProcess {
public ImportAdjacencyListProcess(SpreadsheetGeneralConfiguration generalConfig, ContainerLoader container,
ProgressTicket progressTicket, SheetParser parser) {
super(generalConfig, container, progressTic... |
container.setFillLabelWithId(true);
Progress.start(progressTicket);
for (SheetRow row : parser) {
if (cancel) {
break;
}
int size = row.size();
if (size > 0) {
String source = row.get(0);
if (sou... | 125 | 234 | 359 | <methods>public void <init>(org.gephi.io.importer.plugin.file.spreadsheet.process.SpreadsheetGeneralConfiguration, org.gephi.io.importer.api.ContainerLoader, org.gephi.utils.progress.ProgressTicket, org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser) ,public boolean cancel() ,public void close() throws jav... |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/ImportEdgesProcess.java | ImportEdgesProcess | execute | class ImportEdgesProcess extends AbstractImportProcess {
public static final String EDGE_SOURCE = "source";
public static final String EDGE_TARGET = "target";
public static final String EDGE_TYPE = "type";
public static final String EDGE_KIND = "kind";
public static final String EDGE_ID = "id";
... |
setupColumnsIndexesAndFindSpecialColumns(
Arrays.asList(EDGE_SOURCE, EDGE_TARGET, EDGE_TYPE, EDGE_KIND, EDGE_ID, EDGE_LABEL),
generalConfig.getColumnsClasses());
Integer sourceColumnIndex = specialColumnsIndexMap.get(EDGE_SOURCE);
Integer targetColumnIndex = specialColu... | 300 | 955 | 1,255 | <methods>public void <init>(org.gephi.io.importer.plugin.file.spreadsheet.process.SpreadsheetGeneralConfiguration, org.gephi.io.importer.api.ContainerLoader, org.gephi.utils.progress.ProgressTicket, org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser) ,public boolean cancel() ,public void close() throws jav... |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/ImportMatrixProcess.java | ImportMatrixProcess | execute | class ImportMatrixProcess extends AbstractImportProcess {
public ImportMatrixProcess(SpreadsheetGeneralConfiguration generalConfig, ContainerLoader container,
ProgressTicket progressTicket, SheetParser parser) {
super(generalConfig, container, progressTicket, parser);
}
... |
container.setFillLabelWithId(true);
Progress.start(progressTicket);
List<String> targetLabels = new ArrayList<>();
List<String> sourceLabels = new ArrayList<>();
boolean firstRow = true;
int rowCount = 0;
for (SheetRow row : parser) {
if (firstRow)... | 118 | 620 | 738 | <methods>public void <init>(org.gephi.io.importer.plugin.file.spreadsheet.process.SpreadsheetGeneralConfiguration, org.gephi.io.importer.api.ContainerLoader, org.gephi.utils.progress.ProgressTicket, org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser) ,public boolean cancel() ,public void close() throws jav... |
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