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DiBO-DesignBench-Snapshot

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DiBO-DesignBench-Snapshot / SOURCE_COMPARISON.md
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Initial DiBO Design-Bench reproducibility snapshot
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Source Comparison

Scope

  • Comparison date (UTC): 2026-08-06
  • Local archive source path: /home/ubuntu/borealis/users/zpointsun/design_bench_data.zip
  • Local archive: design_bench_data.zip
  • Local archive byte size: 142,923,783
  • Local archive SHA-256: 6a642d8b78f79ffb82ee6d7b73e2c4569c92e2f31a325cea32c4e7ef68e32e81
  • Local ZIP entries: 261 (247 files and 14 directories)
  • Local uncompressed bytes: 593,018,567
  • Local archive root: design_bench_data/
  • Reference repository: beckhamc/design_bench_data
  • Compared reference revision: 79006c5105c6d0da75b2d9b599f31a5e74136778
  • Reference files excluding .gitattributes: 444 (955,018,282 bytes)

Methodology

For every local ZIP file member, the comparison strips the top-level design_bench_data/ prefix, stream-decompresses the member with Python's zipfile.ZipFile.open, and computes SHA-256 over the decompressed bytes. For the reference repository at the exact revision above, LFS content SHA-256 metadata is compared directly; non-LFS files are downloaded at that revision and hashed from their bytes. The directly downloaded non-LFS file set was: smiles_vocab.txt.

Overall Result

  • Shared paths: 244
  • Shared paths with identical bytes: 244
  • Shared paths with mismatched bytes: 0
  • Local-only paths: 3
  • Reference-only paths: 200

All overlapping files were byte-identical at the compared revision, including every file used by the four DiBO tasks. The local DiBO snapshot is not a complete mirror of the reference repository and the two sources differ in coverage.

Local-only Paths

  • DiscreteDataset/random_forest.zip
  • gfp/gfp/tensorflow_transformer.zip
  • utr/utr/tensorflow_resnet.zip

Family-level Coverage

Family Local Reference Shared Identical Mismatched Local-only Reference-only
DiscreteDataset 1 0 0 0 0 1 0
ant_morphology 3 5 3 3 0 0 2
chembl-ALB-CHEMBL3885882 0 2 0 0 0 0 2
chembl-ALP-CHEMBL3885882 0 2 0 0 0 0 2
chembl-ALT-CHEMBL3885882 0 2 0 0 0 0 2
chembl-AST-CHEMBL3885882 0 2 0 0 0 0 2
chembl-BASOLE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-BILI-CHEMBL3885882 0 2 0 0 0 0 2
chembl-BUN-CHEMBL3885882 0 2 0 0 0 0 2
chembl-CHLORIDE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-CHOL-CHEMBL3885882 0 2 0 0 0 0 2
chembl-CK-CHEMBL3885882 0 2 0 0 0 0 2
chembl-CREAT-CHEMBL3885882 0 2 0 0 0 0 2
chembl-EOSLE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-GLUC-CHEMBL3885882 0 2 0 0 0 0 2
chembl-HCT-CHEMBL3885882 0 2 0 0 0 0 2
chembl-HGB-CHEMBL3885882 0 2 0 0 0 0 2
chembl-LYMLE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-MCH-CHEMBL3885882 0 2 0 0 0 0 2
chembl-MCHC-CHEMBL3885882 0 2 0 0 0 0 2
chembl-MCV-CHEMBL3885882 0 2 0 0 0 0 2
chembl-MONOLE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-NEUTLE-CHEMBL3885882 0 2 0 0 0 0 2
chembl-PHOS-CHEMBL3885882 0 2 0 0 0 0 2
chembl-PLAT-CHEMBL3885882 0 2 0 0 0 0 2
chembl-POTASSIUM-CHEMBL3885882 0 2 0 0 0 0 2
chembl-PROT-CHEMBL3885882 0 2 0 0 0 0 2
chembl-RBC-CHEMBL3885882 0 2 0 0 0 0 2
chembl-SODIUM-CHEMBL3885882 0 2 0 0 0 0 2
chembl-WBC-CHEMBL3885882 0 2 0 0 0 0 2
cifar_nas 2 2 2 2 0 0 0
dkitty_morphology 3 5 3 3 0 0 2
gfp 25 50 24 24 0 1 26
gfp_data.csv 0 1 0 0 0 0 1
hopper_controller 2 4 2 2 0 0 2
nas_bench 0 52 0 0 0 0 52
smiles_vocab.txt 1 1 1 1 0 0 0
superconductor 11 12 11 11 0 0 1
tf_bind_10-pho4 168 168 168 168 0 0 0
tf_bind_8-SIX6_REF_R1 2 4 2 2 0 0 2
toy_continuous 0 28 0 0 0 0 28
toy_discrete 0 28 0 0 0 0 28
utr 29 28 28 28 0 1 0

DiBO Task Coverage

DiBO task Reference path Local Reference Shared Identical Mismatched Local-only Reference-only
TFBind8 tf_bind_8-SIX6_REF_R1 2 4 2 2 0 0 2
TFBind10 tf_bind_10-pho4 168 168 168 168 0 0 0
Ant Morphology ant_morphology 3 5 3 3 0 0 2
D'Kitty Morphology dkitty_morphology 3 5 3 3 0 0 2