SOURCE_COMPARISON.md

# Source Comparison

## Scope

- Comparison date (UTC): 2026-08-06
- Local archive source path: `/home/ubuntu/borealis/users/zpointsun/design_bench_data.zip`
- Local archive: `design_bench_data.zip`
- Local archive byte size: 142,923,783
- Local archive SHA-256: `6a642d8b78f79ffb82ee6d7b73e2c4569c92e2f31a325cea32c4e7ef68e32e81`
- Local ZIP entries: 261 (247 files and 14 directories)
- Local uncompressed bytes: 593,018,567
- Local archive root: `design_bench_data/`
- Reference repository: [`beckhamc/design_bench_data`](https://huggingface.co/datasets/beckhamc/design_bench_data)
- Compared reference revision: `79006c5105c6d0da75b2d9b599f31a5e74136778`
- Reference files excluding `.gitattributes`: 444 (955,018,282 bytes)

## Methodology

For every local ZIP file member, the comparison strips the top-level
`design_bench_data/` prefix, stream-decompresses the member with Python's
`zipfile.ZipFile.open`, and computes SHA-256 over the decompressed bytes.
For the reference repository at the exact revision above, LFS content SHA-256
metadata is compared directly; non-LFS files are downloaded at that revision
and hashed from their bytes. The directly downloaded non-LFS file set was:
`smiles_vocab.txt`.

## Overall Result

- Shared paths: 244
- Shared paths with identical bytes: 244
- Shared paths with mismatched bytes: 0
- Local-only paths: 3
- Reference-only paths: 200

All overlapping files were byte-identical at the compared revision, including
every file used by the four DiBO tasks. The local DiBO snapshot is not a
complete mirror of the reference repository and the two sources differ in
coverage.

## Local-only Paths

- `DiscreteDataset/random_forest.zip`
- `gfp/gfp/tensorflow_transformer.zip`
- `utr/utr/tensorflow_resnet.zip`

## Family-level Coverage

| Family | Local | Reference | Shared | Identical | Mismatched | Local-only | Reference-only |
| --- | --- | --- | --- | --- | --- | --- | --- |
| DiscreteDataset | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ant_morphology | 3 | 5 | 3 | 3 | 0 | 0 | 2 |
| chembl-ALB-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-ALP-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-ALT-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-AST-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-BASOLE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-BILI-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-BUN-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-CHLORIDE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-CHOL-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-CK-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-CREAT-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-EOSLE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-GLUC-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-HCT-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-HGB-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-LYMLE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-MCH-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-MCHC-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-MCV-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-MONOLE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-NEUTLE-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-PHOS-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-PLAT-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-POTASSIUM-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-PROT-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-RBC-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-SODIUM-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| chembl-WBC-CHEMBL3885882 | 0 | 2 | 0 | 0 | 0 | 0 | 2 |
| cifar_nas | 2 | 2 | 2 | 2 | 0 | 0 | 0 |
| dkitty_morphology | 3 | 5 | 3 | 3 | 0 | 0 | 2 |
| gfp | 25 | 50 | 24 | 24 | 0 | 1 | 26 |
| gfp_data.csv | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| hopper_controller | 2 | 4 | 2 | 2 | 0 | 0 | 2 |
| nas_bench | 0 | 52 | 0 | 0 | 0 | 0 | 52 |
| smiles_vocab.txt | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| superconductor | 11 | 12 | 11 | 11 | 0 | 0 | 1 |
| tf_bind_10-pho4 | 168 | 168 | 168 | 168 | 0 | 0 | 0 |
| tf_bind_8-SIX6_REF_R1 | 2 | 4 | 2 | 2 | 0 | 0 | 2 |
| toy_continuous | 0 | 28 | 0 | 0 | 0 | 0 | 28 |
| toy_discrete | 0 | 28 | 0 | 0 | 0 | 0 | 28 |
| utr | 29 | 28 | 28 | 28 | 0 | 1 | 0 |

## DiBO Task Coverage

| DiBO task | Reference path | Local | Reference | Shared | Identical | Mismatched | Local-only | Reference-only |
| --- | --- | --- | --- | --- | --- | --- | --- | --- |
| TFBind8 | tf_bind_8-SIX6_REF_R1 | 2 | 4 | 2 | 2 | 0 | 0 | 2 |
| TFBind10 | tf_bind_10-pho4 | 168 | 168 | 168 | 168 | 0 | 0 | 0 |
| Ant Morphology | ant_morphology | 3 | 5 | 3 | 3 | 0 | 0 | 2 |
| D'Kitty Morphology | dkitty_morphology | 3 | 5 | 3 | 3 | 0 | 0 | 2 |