README.md

metadata

license: mit
tags:
  - bpnet
  - bpnet-lite
  - genomics
  - chip-seq
  - transcription-factor
  - sox2
  - mm10
library_name: bpnet-lite

Model details

• Genome: mm10
• Checkpoint selection: exp26_SOX2.torch is the best-validation-loss checkpoint saved during training by bpnet-lite's fit routine (as opposed to a .final.torch checkpoint, which reflects the last training epoch and is not included here).

Performance

Reported metrics found in exp26_SOX2.performance.tsv.

See exp26_SOX2.evaluate.json for the full evaluation output.

Files

File	Description
exp26_SOX2.torch	Model weights (best validation checkpoint)
exp26_SOX2.bpnet.fit.json	Full training configuration (architecture, data paths, chrom split, hyperparameters)
exp26_SOX2.bpnet.attribute.json	Configuration used for computing attributions downstream
exp26_SOX2.performance.tsv	Reported performance metrics
exp26_SOX2.evaluate.json	Full evaluation output
exp26_SOX2.log	Training log