| --- |
| license: mit |
| tags: |
| - bpnet |
| - bpnet-lite |
| - genomics |
| - chip-seq |
| - transcription-factor |
| - sox2 |
| - mm10 |
| library_name: bpnet-lite |
| --- |
| |
| ## Model details |
| - **Genome:** mm10 |
| - **Checkpoint selection:** `exp26_SOX2.torch` is the best-validation-loss checkpoint saved |
| during training by `bpnet-lite`'s `fit` routine (as opposed to a `.final.torch` checkpoint, |
| which reflects the last training epoch and is not included here). |
|
|
| ## Performance |
|
|
| Reported metrics found in `exp26_SOX2.performance.tsv`. |
|
|
| See `exp26_SOX2.evaluate.json` for the full evaluation output. |
|
|
| ## Files |
|
|
| | File | Description | |
| |---|---| |
| | `exp26_SOX2.torch` | Model weights (best validation checkpoint) | |
| | `exp26_SOX2.bpnet.fit.json` | Full training configuration (architecture, data paths, chrom split, hyperparameters) | |
| | `exp26_SOX2.bpnet.attribute.json` | Configuration used for computing attributions downstream | |
| | `exp26_SOX2.performance.tsv` | Reported performance metrics | |
| | `exp26_SOX2.evaluate.json` | Full evaluation output | |
| | `exp26_SOX2.log` | Training log | |
|
|
