README.md

metadata

tags:
  - ChromBPNet
  - deep-learning
  - genomics
  - ATAC-seq
  - pituitary
  - mouse

Mouse Lbt2 ChromBPNet Model

Description

ChromBPNet model trained on bulk ATAC-seq data from Lbt2 cells.

Files

• models/chrombpnet.h5 — Full ChromBPNet model
• models/chrombpnet_nobias.h5 — ChromBPNet model without bias correction
• models/bias_model_scaled.h5 — Scaled Tn5 bias model

Training Details

• Genome: mm10
• Cell type: Lbt2
• Data type: Bulk ATAC-seq
• Condition: None
• Bias model used: Tn5-bias-mm10-Lbt2/bias.h5
• Framework: ChromBPNet

Context

Part of a ChromBPNet atlas of mouse pituitary cell types.

Bias correction was performed using the corresponding bias model: Pituitary ChromBPNet - Bias models

See the full atlas: Pituitary ChromBPNet - Bulk ATAC-seq Models