| --- |
| tags: |
| - ChromBPNet |
| - deep-learning |
| - genomics |
| - ATAC-seq |
| - pituitary |
| - mouse |
| --- |
| |
| # Mouse Lbt2 ChromBPNet Model |
|
|
| ## Description |
| ChromBPNet model trained on bulk ATAC-seq data from Lbt2 cells. |
|
|
| ## Files |
| - `models/chrombpnet.h5` — Full ChromBPNet model |
| - `models/chrombpnet_nobias.h5` — ChromBPNet model without bias correction |
| - `models/bias_model_scaled.h5` — Scaled Tn5 bias model |
|
|
| ## Training Details |
| - **Genome:** mm10 |
| - **Cell type:** Lbt2 |
| - **Data type:** Bulk ATAC-seq |
| - **Condition:** None |
| - **Bias model used:** Tn5-bias-mm10-Lbt2/bias.h5 |
| - **Framework:** [ChromBPNet](https://github.com/kundajelab/chrombpnet) |
|
|
| ## Context |
| Part of a ChromBPNet atlas of mouse pituitary cell types. |
|
|
| Bias correction was performed using the corresponding bias model: [Pituitary ChromBPNet - Bias models](https://huggingface.co/collections/ge8rgia) |
|
|
| See the full atlas: [Pituitary ChromBPNet - Bulk ATAC-seq Models](https://huggingface.co/collections/ge8rgia) |
