| { |
| "dataset": "SEATTLE", |
| "architecture": "TransformerGenerator", |
| "d_model": 384, |
| "nhead": 6, |
| "nlayers": 12, |
| "dim_embedding": 384, |
| "dropout": 0.1, |
| "nclass": 2, |
| "pad_token": "<pad>", |
| "cell_emb_style": "avg-pool", |
| "context_specific_projections": true, |
| "constant_ctx": false, |
| "only_contrastive": true, |
| "DA": true, |
| "lambda_sinkhorn": 0.005, |
| "contexts": [ |
| "disease", |
| "cell_type", |
| "tissue" |
| ], |
| "merged_contexts": "disease_cell_type_tissue", |
| "vocab_size": 18370, |
| "max_length_up": 1024, |
| "max_length_down": 1024, |
| "temperature": 0.1, |
| "seed": 20, |
| "training_epoch": 0, |
| "training_global_step": 40000, |
| "data_composition": { |
| "diseases": [ |
| "dementia", |
| "normal" |
| ], |
| "tissues": [ |
| "dorsolateral prefrontal cortex", |
| "middle temporal gyrus" |
| ], |
| "cell_type_ontology_ids": [ |
| "CL:0000128", |
| "CL:0000129", |
| "CL:0002453", |
| "CL:0002605", |
| "CL:1001602", |
| "CL:4023011", |
| "CL:4023012", |
| "CL:4023013", |
| "CL:4023015", |
| "CL:4023016", |
| "CL:4023017", |
| "CL:4023018", |
| "CL:4023036", |
| "CL:4023038", |
| "CL:4023040", |
| "CL:4023041", |
| "CL:4023051", |
| "CL:4023064" |
| ] |
| } |
| } |
