Link and cite version 2 of the NTv3 preprint (#7)

- Link and cite version 2 of the NTv3 preprint (8776964c96dff30ed19d91f8bc2d99b19a1977e6)
- Drop the release-status banner and the unused TBC marker style (9e8863b0f70c727fc027e4ce9edac9677a195083)
- License the Space's code and notebooks under Apache-2.0 (5c981915ccc3d22c522f02e5e21c2c2c9b188d23)

README.md

@@ -5,6 +5,7 @@ colorFrom: indigo
 colorTo: blue
 sdk: static
 pinned: false
+license: apache-2.0
 ---
 
 # 🧬 NTv3: Foundation Models for Genomics
@@ -14,7 +15,6 @@ capabilities: **functional-track prediction**, **gene annotation** and **regulat
 paper's design models, the plant promoter one is released as an example of the generative models. This Space is the
 companion hub, with runnable PyTorch notebooks.
 
-> **Release status.** This Space is being prepared and items still to be settled are marked `TBC` throughout.
 > Looking for the 2025 models? See [Initial release (2025)](#-initial-release-2025) below.
 
 ## 📖 About NTv3
@@ -216,7 +216,7 @@ in their materials do not always match the current paper. Where they differ, the
 
 ## 🔗 Links
 
-- 📄 **Paper:** preprint `TBC`
+- 📄 **Paper:** [bioRxiv preprint](https://www.biorxiv.org/content/10.64898/2025.12.22.695963)
 - 💻 **JAX model code:** [github.com/instadeepai/nucleotide-transformer](https://github.com/instadeepai/nucleotide-transformer)
 - 🎯 **Model collection:** [NTv3 collection](https://huggingface.co/collections/InstaDeepAI/ntv3)
 - 📚 **Benchmark dataset:** [`InstaDeepAI/NTv3_benchmark_dataset_revised`](https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised)
@@ -226,14 +226,14 @@ in their materials do not always match the current paper. Where they differ, the
 
 ## 📝 Citation
 
-`TBC`. To be added on publication.
-
 ```bibtex
 @article{ntv3,
-  title   = {…},
-  author  = {…},
-  journal = {…},
-  year    = {…}
+  title   = {A multispecies foundation model for genome function prediction, gene annotation and sequence design},
+  author  = {Boshar, Sam and Evans, Benjamin and Tang, Ziqi and Adel, Yanis and Bornachot, Yohan and Sidbon, Shawn and Lorbeer, Franziska K. and Picard, Armand and Rajesh, Chandana and Seitz, Evan and Emms, David and Mendoza-Revilla, Javier and Hernandez, Ariana and Al-Ani, Fatimah and Karch, Tristan and Schiff, Yair and Lopez, Marie and Laterre, Alexandre and Beguir, Karim and Koo, Peter and Kuleshov, Volodymyr and Stark, Alexander and de Almeida, Bernardo P. and Pierrot, Thomas},
+  journal = {bioRxiv},
+  year    = {2026},
+  doi     = {10.64898/2025.12.22.695963},
+  url     = {https://www.biorxiv.org/content/10.64898/2025.12.22.695963}
 }
 ```
 
@@ -243,4 +243,4 @@ in their materials do not always match the current paper. Where they differ, the
 places conditions on the **outputs** of the models. See the `MODEL-LICENSE.md` shipped in each model repository for the
 authoritative terms.
 
-**Code and notebooks in this Space:** `TBC`
+**Code and notebooks in this Space:** Apache-2.0.

index.html

@@ -198,23 +198,6 @@
       display: block;
       border-radius: 12px;
     }
-    /* Placeholder marker for content pending release.
-       Every unresolved item on this Space is tagged with one of these,
-       so they can be found by searching the page for "TBC". */
-    .todo {
-      display: inline-block;
-      font-family: var(--mono);
-      font-size: 11px;
-      font-weight: 600;
-      letter-spacing: 0.04em;
-      padding: 2px 7px;
-      margin-left: 6px;
-      border-radius: 6px;
-      border: 1px solid rgba(251, 191, 36, 0.45);
-      background: rgba(251, 191, 36, 0.12);
-      color: #fcd34d;
-      vertical-align: middle;
-    }
     .notice {
       margin-top: 18px;
       padding: 16px 18px;
@@ -342,7 +325,7 @@
     </div>
 
     <p class="footer">
-      © instadeep-ai. NTv3 companion Space. Model weights are released under the InstaDeep Open Model Licence; see each model repository.
+      © instadeep-ai. NTv3 companion Space. Code and notebooks are Apache-2.0. Model weights are released under the InstaDeep Open Model Licence; see each model repository.
     </p>
   </div>
   <script src="https://cdnjs.cloudflare.com/ajax/libs/prism/1.29.0/components/prism-core.min.js"></script>

tabs/home.html

@@ -126,7 +126,7 @@
     <div class="card">
       <h2>🔗 Links</h2>
       <ul>
-        <li>📄 Paper <span class="todo">link TBC</span></li>
+        <li><a href="https://www.biorxiv.org/content/10.64898/2025.12.22.695963" target="_blank" rel="noopener noreferrer">📄 Paper (bioRxiv preprint)</a></li>
         <li><a href="https://github.com/instadeepai/nucleotide-transformer" target="_blank" rel="noopener noreferrer">💻 JAX model code (GitHub)</a></li>
         <li><a href="https://huggingface.co/collections/InstaDeepAI/ntv3" target="_blank" rel="noopener noreferrer">🎯 HF model collection</a></li>
         <li><a href="https://huggingface.co/datasets/InstaDeepAI/NTv3_benchmark_dataset_revised" target="_blank" rel="noopener noreferrer">📚 NTv3 benchmark dataset</a></li>