README.md

metadata

title: Advanced Plate Map
emoji: 💻
colorFrom: purple
colorTo: purple
sdk: gradio
sdk_version: 5.44.0
app_file: app.py
pinned: false

Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference

Advanced Plate Map Designer

A Streamlit app for creating detailed 24- and 96-well plate maps with multi-factor encodings (cell line, seeding density, compound, concentration, controls, etc.) and exporting high-quality PNG/SVG figures and CSV/Excel tables.

Quickstart

python -m venv .venv && source .venv/bin/activate   # or use conda/mamba
pip install -r requirements.txt
streamlit run plate_map_app.py

Highlights

• Supports 96-well (8x12) and 24-well (4x6) plates
• Batch Quick Assign using ranges like A1:A6, B1:B3, D5
• Serial Dilution Wizard and Seeding Gradient tools
• Encode wells by compound, cell line, controls, concentration, seeding density
• Optional text overlay per well: concentration, cells/well, notes, replicate, etc.
• Edge-well highlighting and one-click edge buffer/blank marking
• Import existing maps from CSV/Excel (must include a well column)
• Export plate table to CSV/Excel and figure to PNG/SVG (vector, publication-ready)
• Legends for numeric and categorical encodings

Tips

• Choose Color wells by → concentration to see a continuous colorbar; select compound or cell_line for categorical palettes.
• The small center dot color encodes cell_color (set via Quick Assign).
• Use the SVG export for Illustrator/Inkscape editing.

Table Schema (columns)

well,row,col,cell_line,cell_color,seeding_density,compound,compound_color,concentration,conc_units,vehicle,control_type,timepoint,replicate,group_id,notes

You can add extra columns when importing; they will be kept and saved on export.

---

Made by ChatGPT.