merge: label-join decided as route (c) — no cBioPortal PDAC subtype call exists

docs: label-join decided as route (c) — cBioPortal publishes no PDAC subtype call

merge: raw-result legibility — summary table, abridged JSON, full-payload download

docs: correct the legibility commit sha after rebase (2f6f12d)

merge: reconcile raw-accordion bookkeeping with the modality-parity promotion

docs(memory): raw-result legibility fixed on dev — payload untouched, render capped

docs(memory): modality parity promoted to prod — verified live; label finding scoped

merge: reconcile dev with prod bookkeeping ahead of the modality-parity promotion

docs(memory): modality-surface parity recorded — SV reachable, refusal owned by tests

subtype-join: close the cohort search as a negative result; state orchestrator-only on the tab

docs: README reflects deployed+gated reality; dev ALLOWED_IDS roster recorded

docs: prod audit sink verified live — wedged-restart trap recorded

docs: invisible-denial fix promoted to prod — verified live, gates clean

docs(memory): promoted 2e971df to prod — denial fix verified live; dev realign pending

docs(memory): invisible-denial fix recorded — dev-only, tests lock visibility

docs: dead-button = invisible signed-out denial; prod sink token landed on dev Space; ADMIN/ALLOWED stay secrets

docs: dev Space public — post-flip verification green, staging lane now click-through capable

docs: dev Space configured — gate verified fail-closed pre-flip, sink separation confirmed

docs(todo): dev-Space visibility — recommend public+enforced gate, runbook for Anne

docs(memory): dev Space configured & verified — the ADR-0004 gate is live on staging

docs(memory): prod audit sink wired to durable HF dataset — variables set, token secret pending

docs(memory): stray secrets deleted from prod Space; post-restart gate healthy

feat(auth): decide the whoami cache's TTL and HF-outage behaviour (ADR-0009)

docs(memory): legibility pass deployed as 3ad3d85 and verified on prod

docs(memory): the stacked-chart split, the two axis distortions, and the render race caught before shipping

docs: regression fix deployed as 125b8a5 and verified on prod in both directions

docs(memory): the regression I shipped in 23d37b6, the three-way measurement, and why colors_in_legend was never cosmetic

docs: all three fixes verified on the merged build; the dev Space cannot be clicked through while private

docs(memory): the SV under-call — a plausible cause that was wrong, and how the empty diff caught it

docs(memory): record the 2026-08-05 click-through — what passed, the two display bugs, and the three UI-unreachable items

docs: dev Space is live at 9b5fe82; record the install-hooks copy trap

docs(memory): record the dev-lane setup and the pre-push mirror fix

fix: close three silent-fallback wrong answers (modality, test floor, BYOD fusions)

docs(memory): correct the widening entry's deploy status — it shipped as 7ae3398

feat(sv): structural-variant modality (ADR-0008) — fusions, with three gates

feat(panel): widen 19 → 29 genes (HR + MMR), and stop silently dropping uncurated genes

fix: empty-genes parity + name the reason in the mouse BYOD refusal

docs(memory): archive the deleted branch tips as archive/* tags

docs(memory): record the branch reconciliation — 7 lanes into main, 1 real commit recovered

spike: the mouse/KPC variant path — refusal STANDS (+ scope confirm, stale-status fix)

docs(deploy): re-sync the orchestrator registration descriptor with the live Space

feat(api): expose samples_profiled so callers can reconstruct WT

docs(memory): restore the CPTAC entry the rebase silently dropped

docs: the orchestrator -> this agent path is live in prod

hooks: keep the GitHub mirror in step with every deploy

deploy: Space is public; orchestrator boundary fixed and verified

ops: GitHub mirror live (first CI ever); scope gate closed

verify: HF_TOKEN is set; the blocker is private-Space visibility, not auth

fix: main shipped unresolved conflict markers; guard against a repeat

verify: routing leg passes; dispatch blocked by private-Space 404 (HF_TOKEN unset)