pdac-genomics-agent-dev / src /workflows /variant_status.py

Commit History

fix(sv): read the frame claim out of `annotation`, and re-curate MSK
8f96c2d

avoigt1121 Claude Opus 5 commited on

fix(sv): read MSK's hyphenated frame claim, in the classifier AND the depth gate
5c04052

avoigt1121 Claude Opus 5 commited on

feat(sv): structural-variant modality (ADR-0008) β€” fusions, with three gates
0f39c3b

avoigt1121 Claude Fable 5 commited on

merge: cohort survey + denominator fix into main (ADR-0006/0007)
80b5e01

avoigt1121 Claude Opus 5 commited on

cadence: re-curation policy for curated artifacts (ADR-0007)
9f31a37

avoigt1121 Claude Opus 5 commited on

cohorts: +2 curated (6 total); fix frequency denominators (TCGA KRAS 73%->91%)
736c0d2

avoigt1121 Claude Opus 5 commited on

C2 + C3: per-study license gate and polite client β€” source conditions complete
51472a6

avoigt1121 Claude Fable 5 commited on

C4: curate-and-cache β€” the cBioPortal API leaves the request path
cb94eb2

avoigt1121 Claude Fable 5 commited on

M3: BYOD upload + deploy hardening
e922c35

avoigt1121 Claude Opus 4.8 commited on

M1: cBioPortal status-matrix curation + query_variant_status
693a67d

avoigt1121 Claude Opus 4.8 commited on

scaffold: pdac-genomics-agent β€” third specialist for PDAC DNA (mutation/CNV) analysis
63ea7bf

Annie Voigt Claude Opus 4.8 commited on