microbiome-space / README.md
the-puzzler
Update README and app.py to reflect stability scoring terminology
20c7011

A newer version of the Gradio SDK is available: 6.10.0

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metadata
title: Microbiome Space
emoji: 🧬
colorFrom: blue
colorTo: green
sdk: gradio
sdk_version: 5.3.0
python_version: '3.10'
app_file: app.py
pinned: false

Microbiome Stability Scoring Explorer

Upload a FASTA of genes, embed with prokbert-mini-long (mean pooling), score with large-notext, and inspect:

  • UMAP of input embeddings
  • UMAP of final embeddings
  • Stability score distribution