README.md

---
title: Microbiome Space
emoji: 🧬
colorFrom: blue
colorTo: green
sdk: gradio
sdk_version: "5.3.0"
python_version: "3.10"
app_file: app.py
pinned: false
---

# Microbiome Stability Scoring Explorer

Upload a FASTA of genes, embed with `prokbert-mini-long` (mean pooling), score with `large-notext`, and inspect:
- UMAP of input embeddings
- UMAP of final embeddings
- Stability score distribution