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| ✓ Initialized. View run at | |
| https://modal.com/apps/miyu-wannaone-horiuchi/main/ap-GCiYQgOnZTEaVptGQgPIy0 | |
| ✓ Created objects. | |
| ├── 🔨 Created mount | |
| │ /Users/miyuhoriuchi/microbe-model/scripts/36_extract_marker_sequences.py | |
| ├── 🔨 Created mount data/markers/unified/unified_markers.hmm | |
| └── 🔨 Created function MarkerSeqExtractor.*. | |
| Marker-sequence extract: 45,856 genomes pending (199 cached) | |
| max_per_cat=16 | |
| [setup] loaded 48 marker HMMs[setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| [setup] loaded 48 marker HMMs | |
| 100 ok / 0 fail | |
| 200 ok / 0 fail | |
| 300 ok / 3 fail | |
| 400 ok / 3 fail | |
| 500 ok / 3 fail | |
| 600 ok / 3 fail | |
| 700 ok / 3 fail | |
| 800 ok / 4 fail | |
| 900 ok / 4 fail | |
| 1,000 ok / 4 fail | |
| 1,100 ok / 4 fail | |
| 1,200 ok / 6 fail | |
| 1,300 ok / 6 fail | |
| 1,400 ok / 6 fail | |
| 1,500 ok / 220 fail | |
| 1,600 ok / 220 fail | |
| 1,700 ok / 220 fail | |
| 1,800 ok / 220 fail | |
| 1,900 ok / 220 fail | |
| 2,000 ok / 221 fail | |
| 2,100 ok / 221 fail | |
| 2,200 ok / 221 fail | |
| 2,300 ok / 252 fail | |
| 2,400 ok / 253 fail | |
| 2,500 ok / 253 fail | |
| 2,600 ok / 253 fail | |
| 2,700 ok / 253 fail | |
| 2,800 ok / 301 fail | |
| 2,900 ok / 308 fail | |
| 3,000 ok / 308 fail | |
| 3,100 ok / 308 fail | |
| 3,200 ok / 350 fail | |
| 3,300 ok / 360 fail | |
| 3,400 ok / 360 fail | |
| 3,500 ok / 472 fail | |
| 3,600 ok / 472 fail | |
| 3,700 ok / 472 fail | |
| 3,800 ok / 472 fail | |
| 3,900 ok / 472 fail | |
| 4,000 ok / 472 fail | |
| 4,100 ok / 472 fail | |
| 4,200 ok / 472 fail | |
| 4,300 ok / 473 fail | |
| 4,400 ok / 473 fail | |
| 4,500 ok / 473 fail | |
| 4,600 ok / 473 fail | |
| 4,700 ok / 473 fail | |
| 4,800 ok / 473 fail | |
| 4,900 ok / 473 fail | |
| 5,000 ok / 476 fail | |
| 5,100 ok / 476 fail | |
| 5,200 ok / 479 fail | |
| 5,300 ok / 479 fail | |
| 5,400 ok / 479 fail | |
| 5,500 ok / 480 fail | |
| 5,600 ok / 480 fail | |
| 5,700 ok / 480 fail | |
| 5,800 ok / 480 fail | |
| 5,900 ok / 480 fail | |
| 6,000 ok / 480 fail | |
| 6,100 ok / 480 fail | |
| 6,200 ok / 534 fail | |
| 6,300 ok / 534 fail | |
| 6,400 ok / 537 fail | |
| 6,500 ok / 537 fail | |
| 6,600 ok / 539 fail | |
| 6,700 ok / 539 fail | |
| 6,800 ok / 541 fail | |
| 6,900 ok / 554 fail | |
| 7,000 ok / 559 fail | |
| 7,100 ok / 561 fail | |
| 7,200 ok / 593 fail | |
| 7,300 ok / 615 fail | |
| 7,400 ok / 623 fail | |
| 7,500 ok / 633 fail | |
| 7,600 ok / 633 fail | |
| 7,700 ok / 633 fail | |
| 7,800 ok / 633 fail | |
| 7,900 ok / 633 fail | |
| 8,000 ok / 634 fail | |
| 8,100 ok / 636 fail | |
| 8,200 ok / 636 fail | |
| 8,300 ok / 637 fail | |
| 8,400 ok / 637 fail | |
| 8,500 ok / 638 fail | |
| 8,600 ok / 638 fail | |
| 8,700 ok / 638 fail | |
| 8,800 ok / 638 fail | |
| 8,900 ok / 638 fail | |
| 9,000 ok / 640 fail | |
| 9,100 ok / 645 fail | |
| 9,200 ok / 645 fail | |
| 9,300 ok / 645 fail | |
| 9,400 ok / 647 fail | |
| 9,500 ok / 651 fail | |
| 9,600 ok / 652 fail | |
| 9,700 ok / 653 fail | |
| 9,800 ok / 654 fail | |
| 9,900 ok / 657 fail | |
| 10,000 ok / 663 fail | |
| 10,100 ok / 665 fail | |
| 10,200 ok / 674 fail | |
| 10,300 ok / 680 fail | |
| 10,400 ok / 680 fail | |
| 10,500 ok / 688 fail | |
| 10,600 ok / 690 fail | |
| 10,700 ok / 692 fail | |
| 10,800 ok / 695 fail | |
| 10,900 ok / 701 fail | |
| 11,000 ok / 702 fail | |
| 11,100 ok / 712 fail | |
| 11,200 ok / 726 fail | |
| 11,300 ok / 737 fail | |
| 11,400 ok / 771 fail | |
| 11,500 ok / 782 fail | |
| 11,600 ok / 782 fail | |
| 11,700 ok / 783 fail | |
| 11,800 ok / 784 fail | |
| 11,900 ok / 784 fail | |
| 12,000 ok / 789 fail | |
| 12,100 ok / 789 fail | |
| 12,200 ok / 794 fail | |
| 12,300 ok / 794 fail | |
| 12,400 ok / 794 fail | |
| 12,500 ok / 794 fail | |
| 12,600 ok / 794 fail | |
| 12,700 ok / 794 fail | |
| 12,800 ok / 794 fail | |
| 12,900 ok / 794 fail | |
| 13,000 ok / 794 fail | |
| 13,100 ok / 794 fail | |
| 13,200 ok / 815 fail | |
| 13,300 ok / 835 fail | |
| 13,400 ok / 836 fail | |
| 13,500 ok / 840 fail | |
| 13,600 ok / 938 fail | |
| 13,700 ok / 1,051 fail | |
| 13,800 ok / 1,094 fail | |
| 13,900 ok / 1,099 fail | |
| 14,000 ok / 1,195 fail | |
| 14,100 ok / 1,381 fail | |
| 14,200 ok / 1,415 fail | |
| 14,300 ok / 1,460 fail | |
| 14,400 ok / 1,460 fail | |
| 14,500 ok / 1,460 fail | |
| 14,600 ok / 1,460 fail | |
| 14,700 ok / 1,460 fail | |
| 14,800 ok / 1,460 fail | |
| 14,900 ok / 1,461 fail | |
| 15,000 ok / 1,461 fail | |
| 15,100 ok / 1,484 fail | |
| 15,200 ok / 1,494 fail | |
| 15,300 ok / 1,494 fail | |
| 15,400 ok / 1,494 fail | |
| 15,500 ok / 1,494 fail | |
| 15,600 ok / 1,495 fail | |
| 15,700 ok / 1,499 fail | |
| 15,800 ok / 1,499 fail | |
| 15,900 ok / 1,509 fail | |
| 16,000 ok / 1,509 fail | |
| 16,100 ok / 1,516 fail | |
| 16,200 ok / 1,516 fail | |
| 16,300 ok / 1,516 fail | |
| 16,400 ok / 1,527 fail | |
| 16,500 ok / 1,529 fail | |
| 16,600 ok / 1,530 fail | |
| 16,700 ok / 1,530 fail | |
| 16,800 ok / 1,530 fail | |
| 16,900 ok / 1,530 fail | |
| 17,000 ok / 1,532 fail | |
| 17,100 ok / 1,533 fail | |
| 17,200 ok / 1,539 fail | |
| 17,300 ok / 1,543 fail | |
| 17,400 ok / 1,543 fail | |
| 17,500 ok / 1,543 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 17,600 ok / 1,544 fail | |
| 17,700 ok / 1,544 fail | |
| 17,800 ok / 1,548 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 17,900 ok / 1,548 fail | |
| 18,000 ok / 1,551 fail | |
| 18,100 ok / 1,552 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 18,200 ok / 1,553 fail | |
| 18,300 ok / 1,555 fail | |
| 18,400 ok / 1,557 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 18,500 ok / 1,558 fail | |
| 18,600 ok / 1,560 fail | |
| 18,700 ok / 1,560 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 18,800 ok / 1,560 fail | |
| 18,900 ok / 1,560 fail | |
| 19,000 ok / 1,560 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 19,100 ok / 1,574 fail | |
| 19,200 ok / 1,574 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 19,300 ok / 1,574 fail | |
| 19,400 ok / 1,575 fail | |
| 19,500 ok / 1,575 fail | |
| 19,600 ok / 1,575 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 19,700 ok / 1,575 fail | |
| 19,800 ok / 1,606 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 19,900 ok / 1,610 fail | |
| 20,000 ok / 1,610 fail | |
| 20,100 ok / 1,610 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 20,200 ok / 1,610 fail | |
| 20,300 ok / 1,610 fail | |
| 20,400 ok / 1,610 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 20,500 ok / 1,610 fail | |
| 20,600 ok / 1,610 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| 20,700 ok / 1,610 fail | |
| 20,800 ok / 1,610 fail | |
| 20,900 ok / 1,618 fail | |
| WARNING: Logs may not be continuous | |
| WARNING: Logs may not be continuous | |
| [setup] loaded 48 marker HMMs | |
| 21,000 ok / 1,618 fail | |
| 21,100 ok / 1,621 fail | |
| 21,200 ok / 1,621 fail | |
| 21,300 ok / 1,621 fail | |
| 21,400 ok / 1,621 fail | |
| 21,500 ok / 1,621 fail | |
| 21,600 ok / 1,622 fail | |
| 21,700 ok / 1,623 fail | |
| 21,800 ok / 1,623 fail | |
| 21,900 ok / 1,623 fail | |
| 22,000 ok / 1,623 fail | |
| Runner interrupted due to worker preemption. Your Function will be restarted with the same input. For more details, see https://modal.com/docs/guide/preemption | |
| [setup] loaded 48 marker HMMs | |
| 22,100 ok / 1,625 fail | |
| 22,200 ok / 1,628 fail | |
| 22,300 ok / 1,629 fail | |
| 22,400 ok / 1,629 fail | |
| 22,500 ok / 1,629 fail | |
| 22,600 ok / 1,631 fail | |
| 22,700 ok / 1,631 fail | |
| 22,800 ok / 1,631 fail | |
| 22,900 ok / 1,631 fail | |
| 23,000 ok / 1,631 fail | |
| 23,100 ok / 1,640 fail | |
| 23,200 ok / 1,640 fail | |
| 23,300 ok / 1,642 fail | |
| 23,400 ok / 1,643 fail | |
| 23,500 ok / 1,643 fail | |
| 23,600 ok / 1,643 fail | |
| 23,700 ok / 1,643 fail | |
| 23,800 ok / 1,643 fail | |
| 23,900 ok / 1,643 fail | |
| 24,000 ok / 1,651 fail | |
| 24,100 ok / 1,651 fail | |
| 24,200 ok / 1,669 fail | |
| 24,300 ok / 1,669 fail | |
| 24,400 ok / 1,669 fail | |
| 24,500 ok / 1,669 fail | |
| 24,600 ok / 1,669 fail | |
| 24,700 ok / 1,670 fail | |
| 24,800 ok / 1,672 fail | |
| 24,900 ok / 1,680 fail | |
| 25,000 ok / 1,681 fail | |
| 25,100 ok / 1,681 fail | |
| 25,200 ok / 1,682 fail | |
| 25,300 ok / 1,682 fail | |
| 25,400 ok / 1,682 fail | |
| 25,500 ok / 1,682 fail | |
| 25,600 ok / 1,682 fail | |
| 25,700 ok / 1,684 fail | |
| 25,800 ok / 1,687 fail | |
| 25,900 ok / 1,688 fail | |
| 26,000 ok / 1,688 fail | |
| 26,100 ok / 1,688 fail | |
| 26,200 ok / 1,688 fail | |
| 26,300 ok / 1,688 fail | |
| 26,400 ok / 1,689 fail | |
| 26,500 ok / 1,689 fail | |
| 26,600 ok / 1,689 fail | |
| 26,700 ok / 1,689 fail | |
| 26,800 ok / 1,689 fail | |
| 26,900 ok / 1,691 fail | |
| 27,000 ok / 1,691 fail | |
| 27,100 ok / 1,691 fail | |
| 27,200 ok / 1,691 fail | |
| 27,300 ok / 1,694 fail | |
| 27,400 ok / 1,694 fail | |
| 27,500 ok / 1,694 fail | |
| 27,600 ok / 1,694 fail | |
| 27,700 ok / 1,694 fail | |
| 27,800 ok / 1,694 fail | |
| 27,900 ok / 1,694 fail | |
| 28,000 ok / 1,694 fail | |
| 28,100 ok / 1,703 fail | |
| 28,200 ok / 1,703 fail | |
| 28,300 ok / 1,708 fail | |
| 28,400 ok / 1,714 fail | |
| 28,500 ok / 1,714 fail | |
| 28,600 ok / 1,716 fail | |
| 28,700 ok / 1,740 fail | |
| 28,800 ok / 1,740 fail | |
| 28,900 ok / 1,740 fail | |
| 29,000 ok / 1,740 fail | |
| 29,100 ok / 1,740 fail | |
| 29,200 ok / 1,740 fail | |
| 29,300 ok / 1,743 fail | |
| 29,400 ok / 1,743 fail | |
| 29,500 ok / 1,743 fail | |
| 29,600 ok / 1,743 fail | |
| 29,700 ok / 1,777 fail | |
| 29,800 ok / 1,845 fail | |
| 29,900 ok / 1,845 fail | |
| 30,000 ok / 1,845 fail | |
| 30,100 ok / 1,852 fail | |
| [setup] loaded 48 marker HMMs | |
| 30,200 ok / 1,852 fail | |
| 30,300 ok / 1,853 fail | |
| 30,400 ok / 1,907 fail | |
| 30,500 ok / 1,992 fail | |
| 30,600 ok / 2,109 fail | |
| 30,700 ok / 2,109 fail | |
| 30,800 ok / 2,109 fail | |
| 30,900 ok / 2,109 fail | |
| 31,000 ok / 2,125 fail | |
| 31,100 ok / 2,151 fail | |
| Runner interrupted due to worker preemption. Your Function will be restarted with the same input. For more details, see https://modal.com/docs/guide/preemption | |
| [setup] loaded 48 marker HMMs | |
| 31,200 ok / 2,153 fail | |
| 31,300 ok / 2,163 fail | |
| 31,400 ok / 2,205 fail | |
| 31,500 ok / 2,205 fail | |
| 31,600 ok / 2,208 fail | |
| 31,700 ok / 2,212 fail | |
| 31,800 ok / 2,222 fail | |
| 31,900 ok / 2,225 fail | |
| 32,000 ok / 2,228 fail | |
| 32,100 ok / 2,239 fail | |
| 32,200 ok / 2,246 fail | |
| 32,300 ok / 2,247 fail | |
| 32,400 ok / 2,254 fail | |
| [setup] loaded 48 marker HMMs | |
| 32,500 ok / 2,255 fail | |
| 32,600 ok / 2,284 fail | |
| 32,700 ok / 2,302 fail | |
| 32,800 ok / 2,311 fail | |
| 32,900 ok / 2,322 fail | |
| 33,000 ok / 2,322 fail | |
| 33,100 ok / 2,325 fail | |
| 33,200 ok / 2,325 fail | |
| 33,300 ok / 2,326 fail | |
| 33,400 ok / 2,344 fail | |
| 33,500 ok / 2,351 fail | |
| 33,600 ok / 2,356 fail | |
| 33,700 ok / 2,356 fail | |
| 33,800 ok / 2,383 fail | |
| 33,900 ok / 2,563 fail | |
| 34,000 ok / 2,631 fail | |
| 34,100 ok / 2,655 fail | |
| 34,200 ok / 3,031 fail | |
| 34,300 ok / 3,033 fail | |
| 34,400 ok / 3,040 fail | |
| 34,500 ok / 3,040 fail | |
| 34,600 ok / 3,104 fail | |
| 34,700 ok / 3,104 fail | |
| 34,800 ok / 3,205 fail | |
| 34,900 ok / 3,208 fail | |
| 35,000 ok / 3,208 fail | |
| 35,100 ok / 3,357 fail | |
| 35,200 ok / 3,479 fail | |
| 35,300 ok / 3,760 fail | |
| 35,400 ok / 3,835 fail | |
| 35,500 ok / 3,926 fail | |
| 35,600 ok / 3,926 fail | |
| 35,700 ok / 3,926 fail | |
| 35,800 ok / 3,926 fail | |
| 35,900 ok / 3,936 fail | |
| 36,000 ok / 3,942 fail | |
| 36,100 ok / 3,960 fail | |
| [setup] loaded 48 marker HMMs | |
| 36,200 ok / 4,223 fail | |
| 36,300 ok / 4,223 fail | |
| 36,400 ok / 4,223 fail | |
| 36,500 ok / 4,226 fail | |
| 36,600 ok / 4,226 fail | |
| 36,700 ok / 4,268 fail | |
| 36,800 ok / 4,269 fail | |
| 36,900 ok / 4,347 fail | |
| 37,000 ok / 4,442 fail | |
| 37,100 ok / 4,442 fail | |
| 37,200 ok / 4,485 fail | |
| 37,300 ok / 4,485 fail | |
| 37,400 ok / 4,499 fail | |
| 37,500 ok / 4,538 fail | |
| 37,600 ok / 4,563 fail | |
| 37,700 ok / 4,980 fail | |
| 37,800 ok / 5,300 fail | |
| 37,900 ok / 5,300 fail | |
| 38,000 ok / 5,304 fail | |
| 38,100 ok / 5,304 fail | |
| 38,200 ok / 5,316 fail | |
| 38,300 ok / 5,316 fail | |
| 38,400 ok / 5,472 fail | |
| 38,500 ok / 5,473 fail | |
| 38,600 ok / 5,474 fail | |
| 38,700 ok / 5,540 fail | |
| 38,800 ok / 5,540 fail | |
| 38,900 ok / 5,540 fail | |
| 39,000 ok / 5,585 fail | |
| 39,100 ok / 5,585 fail | |
| 39,200 ok / 5,585 fail | |
| 39,300 ok / 5,585 fail | |
| 39,400 ok / 5,585 fail | |
| 39,500 ok / 5,585 fail | |
| 39,600 ok / 5,585 fail | |
| 39,700 ok / 5,585 fail | |
| 39,800 ok / 5,585 fail | |
| 39,900 ok / 5,586 fail | |
| 40,000 ok / 5,586 fail | |
| 40,100 ok / 5,586 fail | |
| 40,200 ok / 5,586 fail | |
| Finished. 40,270 succeeded, 5,586 failed. | |
| Streamed to data/marker_sequences.jsonl | |
| Stopping app - local entrypoint completed. | |
| ✓ App completed. View run at | |
| https://modal.com/apps/miyu-wannaone-horiuchi/main/ap-GCiYQgOnZTEaVptGQgPIy0 | |