| { | |
| "quality_control": { | |
| "methods": [], | |
| "parameters": {} | |
| }, | |
| "spike_removal": { | |
| "enabled": false, | |
| "parameters": {} | |
| }, | |
| "smoothing": { | |
| "methods": ["savitzky-golay"], | |
| "parameters": { | |
| "differentiation_order": 0, | |
| "polynomial_order": 5, | |
| "window_size": 11 | |
| } | |
| }, | |
| "baseline": { | |
| "methods": ["polyfit"], | |
| "parameters": { | |
| "poly_order_fingerprint": 1, | |
| "poly_order_others": 6 | |
| } | |
| }, | |
| "truncation": { | |
| "enabled": false, | |
| "parameters": {} | |
| }, | |
| "normalization": { | |
| "method": "ch", | |
| "parameters": {} | |
| }, | |
| "dim_reduction": { | |
| "methods": ["pca"], | |
| "parameters": { | |
| "pca": { | |
| "n_pc": 2 | |
| } | |
| } | |
| }, | |
| "phenotype": { | |
| "methods": ["kmeans"], | |
| "parameters": { | |
| "kmeans": { | |
| "k": 4, | |
| "n_pc": 10 | |
| } | |
| } | |
| } | |
| } | |