Dataset stringlengths 13 214 | Experiment stringlengths 14 76 | Dataset DOI / URL stringlengths 32 128 | Grouping stringclasses 3
values | 2D images int64 0 5.2k | 3D acquisitions int64 0 358 | Training tiles int64 0 17.6k |
|---|---|---|---|---|---|---|
Drosophila gut | Drosophila Gut TEM | https://doi.org/10.5281/zenodo.6567258 | Public | 1 | 0 | 8 |
Drosophila Third Instar Larva EM Volume | Drosophila Larva Nociceptive Circuit TEM | https://doi.org/10.60533/BOSS-2017-0DCV | Public | 0 | 1 | 400 |
Drosophila Larval Abdominal ssTEM (acardona_abd1_5) | Drosophila Larval CNS ssTEM | https://doi.org/10.60533/BOSS-2015-WYEW | Public | 0 | 1 | 400 |
Drosophila Whole Larval CNS ssTEM (acardona_0111_8) | Drosophila Larval CNS ssTEM | https://doi.org/10.60533/BOSS-2015-WYEW | Public | 0 | 1 | 143 |
Morphology and ultrastructure of external sense organs of Drosophila larvae | Drosophila Larval External Sense Organ Ultrastructure | https://doi.org/10.5061/dryad.1vhhmgr1z | Public | 0 | 10 | 21 |
Drosophila Medulla Seven-Column FIB-SEM Volume | Drosophila Medulla Seven-Column FIB-SEM | https://webknossos.org/datasets/FIB-25_wkw-5bd881bc010000f22e3db5fb/view | Public | 0 | 1 | 85 |
Drosophila muscle | Drosophila Muscle TEM | https://doi.org/10.5281/zenodo.6569281 | Public | 1 | 0 | 0 |
Drosophila mushroom body | Drosophila Mushroom Body Alpha Lobe FIB-SEM | https://doi.org/10.25378/janelia.27075448 | Public | 0 | 1 | 522 |
Drosophila brain: Entire alpha and alpha' lobes of a mushroom body | Drosophila Mushroom Body Alpha Lobes FIB-SEM | https://doi.org/10.25378/janelia.16638268 | Public | 0 | 1 | 400 |
Drosophila Optic Medulla Serial-Section TEM Volume | Drosophila Optic Medulla Connectome TEM | https://doi.org/10.60533/BOSS-2013-49GZ | Public | 0 | 1 | 400 |
TEM tomograms of Drosophila tracheal terminal cells during subcellular tube formation | Drosophila Tracheal Terminal Cell ET | https://doi.org/10.6019/EMPIAR-10434 | Public | 0 | 6 | 375 |
Drosophila ventral nerve cord (VNC) | Drosophila Ventral Nerve Cord FIB-SEM | https://doi.org/10.25378/janelia.24944649 | Public | 0 | 1 | 229 |
Phelps et al. 2021 Drosophila Ventral Nerve Cord | Drosophila Ventral Nerve Cord TEM | https://doi.org/10.60533/BOSS-2021-T21Z | Public | 0 | 1 | 238 |
FlyWire FAFBv14 EM Volume | Drosophila Whole-Brain Connectome (FlyWire FAFB) TEM | https://doi.org/10.60533/BOSS-2020-F81C | Public | 0 | 1 | 400 |
Drosophila brain: Accessory calyx | Drosophila melanogaster Brain Accessory Calyx FIB-SEM | https://doi.org/10.25378/janelia.13114514 | Public | 0 | 1 | 400 |
Drosophila brain: Fan-shaped body | Drosophila melanogaster Brain Fan-Shaped Body FIB-SEM | https://doi.org/10.25378/janelia.13114529 | Public | 0 | 1 | 246 |
D. melanogaster whole larva ('igor') | Drosophila melanogaster Whole Larva FIB-SEM | https://doi.org/10.25378/janelia.26426824 | Public | 0 | 1 | 366 |
Light-activated molecular machines display broad spectrum antibacterial action | E. coli Light-Activated Molecular Machine Antibacterial TEM | https://doi.org/10.5281/zenodo.5888177 | Public | 4 | 0 | 4 |
Data from: Homeostasis of metabolites in Escherichia coli on transition from anaerobic to aerobic conditions and the transient secretion of pyruvate | E. coli PykF Immunogold TEM | https://doi.org/10.5061/dryad.1n542 | Public | 153 | 0 | 153 |
Data from: Three-dimensional reconstruction on cell level: case study elucidates the ultrastructure of the spinning apparatus of Embia sp. (Insecta: Embioptera) | Embia Spinning Apparatus SBF-SEM | https://doi.org/10.5061/dryad.vk3fg | Public | 0 | 1 | 400 |
Sample preparation and data collection for serial block face scanning electron microscopy of mammalian cell monolayers. | Encephalitozoon intestinalis-Infected Vero Cell SBF-SEM | https://doi.org/10.6019/EMPIAR-11683 | Public | 0 | 11 | 3,924 |
An intranuclear bacterial parasite of deep-sea mussels expresses apoptosis inhibitors acquired from its host | Endonucleobacter Intranuclear Parasite in Deep-Sea Mussel TEM | https://doi.org/10.5281/zenodo.13144501 | Public | 6 | 0 | 30 |
Targeted volume Correlative Light and Electron Microscopy of environmental marine microorganisms | Ensiculifera tyrrhenica Dinoflagellate FIB-SEM | https://doi.org/10.6019/EMPIAR-11399 | Public | 0 | 1 | 32 |
Understanding airspace in leaves: 3D anatomy and directional tortuosity | Eucalyptus Leaf Airspace SBF-SEM | https://doi.org/10.5281/zenodo.4766931 | Public | 0 | 4 | 241 |
Data from: Open water camouflage via 'leaky' light guides in the midwater squid Galiteuthis | Galiteuthis Squid Eye Photophore TEM | https://doi.org/10.5061/dryad.g703s | Public | 5 | 0 | 6 |
SBF-SEM Dataset of Guinea Pig Fetal Day 55-59 Psoas Muscle | Guinea Pig Fetal Psoas Muscle SBF-SEM | https://doi.org/10.5281/zenodo.1435581 | Public | 0 | 6 | 807 |
3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles | Guinea Pig Left Ventricle SBF-SEM | https://doi.org/10.6019/EMPIAR-10147 | Public | 0 | 3 | 65 |
Correlative 3D SBFSEM data from: Intermittent bulk release of human cytomegalovirus | HCMV-Infected Human Fibroblast SBF-SEM | https://doi.org/10.5061/dryad.5dv41ns7z | Public | 0 | 1 | 400 |
HeLa cell miniLM CLEM SBF-SEM stack | HeLa Cell CLEM SBF-SEM | https://doi.org/10.5281/zenodo.192470 | Public | 0 | 1 | 20 |
CLEMSite COPB1 Knockdown FIB-SEM Cell Volumes | HeLa Cell COPB1 Knockdown FIB-SEM | https://doi.org/10.6019/EMPIAR-11314 | Public | 0 | 25 | 125 |
BFA-treated HeLa Cell FIB-SEM Volume | HeLa Cell Early Secretory Pathway FIB-SEM | https://doi.org/10.25378/janelia.13469814 | Public | 0 | 1 | 558 |
H89-treated HeLa Cell FIB-SEM Volume - cell 1 | HeLa Cell Early Secretory Pathway FIB-SEM | https://doi.org/10.25378/janelia.13469964 | Public | 0 | 1 | 302 |
H89-treated HeLa Cell FIB-SEM Volume - cell 2 | HeLa Cell Early Secretory Pathway FIB-SEM | https://doi.org/10.25378/janelia.13469970 | Public | 0 | 1 | 400 |
HeLa Cell with RUSH Cargo FIB-SEM Volume - jrc_hela-21 | HeLa Cell Early Secretory Pathway FIB-SEM | https://doi.org/10.25378/janelia.13469550 | Public | 0 | 1 | 156 |
HeLa Cell with RUSH Cargo FIB-SEM Volume - jrc_hela-22 | HeLa Cell Early Secretory Pathway FIB-SEM | https://doi.org/10.25378/janelia.13469901 | Public | 0 | 1 | 270 |
FIB-SEM of a HeLa cell | HeLa Cell FIB-SEM AMST Alignment | https://doi.org/10.6019/EMPIAR-10311 | Public | 0 | 1 | 355 |
Benchmark FIB SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy | HeLa Cell FIB-SEM Benchmark | https://doi.org/10.6019/EMPIAR-10819 | Public | 0 | 1 | 190 |
Kinesin-1 activity recorded in living cells with a precipitating dye FIB-SEM data 1 | HeLa Cell Kinesin-1 FIB-SEM | https://doi.org/10.5281/zenodo.4477917 | Public | 0 | 1 | 119 |
Serial Block Face SEM of HeLa cell pellet with 5 nm pixels and 50 nm slices (benchmark dataset) | HeLa Cell Pellet SBF-SEM | https://doi.org/10.6019/EMPIAR-10106 | Public | 0 | 1 | 400 |
Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) | HeLa Cell Pellet SBF-SEM Benchmark | https://doi.org/10.6019/EMPIAR-10094 | Public | 0 | 1 | 400 |
REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis | HeLa Cell REEP3/4 Knockdown SBF-SEM | https://doi.org/10.6019/EMPIAR-10994 | Public | 0 | 2 | 0 |
Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) | HeLa Cell SBF-SEM ROI Benchmark | https://doi.org/10.6019/EMPIAR-10478 | Public | 0 | 18 | 1,080 |
FIB-SEM imaging of control HeLa cells, cells expressing WT STARD3, and cells expressing the STARD3 FA/YA mutant | HeLa STARD3 ER-Lysosome Contact FIB-SEM | https://doi.org/10.6019/EMPIAR-13156 | Public | 0 | 3 | 0 |
FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7) | Huh-7 GM130 FIB-SEM | https://doi.org/10.6019/EMPIAR-11849 | Public | 0 | 1 | 62 |
Light and electron microscopy continuum-resolution imaging of 3D cell cultures | Human 3D Cell Culture FIB-SEM | https://doi.org/10.6019/EMPIAR-11380 | Public | 0 | 4 | 208 |
Human Airway Epithelium ALI Culture FIB-SEM | Human Airway Epithelium ALI Culture FIB-SEM | https://doi.org/10.25378/janelia.26039314 | Public | 0 | 1 | 82 |
Human Airway Epithelium ALI FIB-SEM | Human Airway Epithelium ALI FIB-SEM | https://doi.org/10.25378/janelia.26035168 | Public | 0 | 1 | 15 |
Human Airway Epithelium FIB-SEM Volume | Human Airway Epithelium FIB-SEM | https://doi.org/10.25378/janelia.25625346 | Public | 0 | 1 | 152 |
SARS-CoV-2 infection in human adult lung alveolar stem cells | Human Alveolar Stem Cell Culture SARS-CoV-2 TEM | https://doi.org/10.6019/EMPIAR-10533 | Public | 780 | 0 | 3,104 |
2D Transmission Electron Microscopy Images | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13887923 | Public | 0 | 131 | 181 |
SBF-SEM Donor 100, Depth 10um, Representative Area 2 | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13888109 | Public | 0 | 1 | 225 |
SBF-SEM Donor 100, Depth 10um, Representative area 1 | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13888106 | Public | 0 | 2 | 585 |
SBF-SEM Donor 100, Depth 20um, Representative Area 1 | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13888113 | Public | 0 | 1 | 400 |
SBF-SEM Donor 100, Depth 20um, Representative Area 2 | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13888116 | Public | 0 | 1 | 400 |
SBF-SEM Donor 57, Depth 25um | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13888085 | Public | 0 | 1 | 400 |
Serial Section Transmission Electron Microscopy | Human Brain Immersion-Fixation Brain-Banking Preservation | https://doi.org/10.5281/zenodo.13887963 | Public | 0 | 2 | 156 |
Serial Block Face - Scanning Electron Microscopy of brain microvessels with/without P. falciparum egress products | Human Brain Microvessel Model P. falciparum SBF-SEM | https://doi.org/10.6019/EMPIAR-12967 | Public | 0 | 2 | 156 |
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 08 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682693 | Public | 3 | 0 | 180 |
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 09 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682744 | Public | 3 | 0 | 564 |
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 10 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682815 | Public | 4 | 0 | 53 |
COVID-19 Lung Cryobiopsy — Data Set 07: Alveolar organisation | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682656 | Public | 3 | 0 | 555 |
COVID-19 Lung Cryobiopsy — Data Set 11: patient C05 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682850 | Public | 1 | 0 | 77 |
COVID-19 Lung Cryobiopsy — Data Set 12: patient C04 C07 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682881 | Public | 2 | 0 | 491 |
COVID-19 Lung Cryobiopsy — Data Set 13: patient C03 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5682980 | Public | 7 | 0 | 1,122 |
COVID-19 Lung Cryobiopsy — Data Set 14: patient C04 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5683073 | Public | 9 | 0 | 1,240 |
COVID-19 Lung Cryobiopsy — Data Set 15: patient C05 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5683122 | Public | 7 | 0 | 2,324 |
COVID-19 Lung Cryobiopsy — Data Set 16: patient C06 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5702444 | Public | 8 | 0 | 751 |
COVID-19 Lung Cryobiopsy — Data Set 17: patient C07 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5702550 | Public | 8 | 0 | 1,713 |
COVID-19 Lung Cryobiopsy — Data Set 18: patient C08 | Human COVID-19 Lung Cryobiopsy Ultrastructure | https://doi.org/10.5281/zenodo.5702609 | Public | 5 | 0 | 860 |
A novel Argonaute 2-Niche at the midzone is essential for Cell-division integrity | Human Cytokinetic Protrusion TEM | https://doi.org/10.5281/zenodo.4270681 | Public | 2 | 0 | 2 |
Dynamic loading of human engineered heart tissue enhances contractile function and drives a desmosome-linked disease phenotype (TEM data) | Human Engineered Heart Tissue Dynamic Loading TEM | https://doi.org/10.5281/zenodo.5056166 | Public | 168 | 0 | 2,633 |
Human Fetal Kidney TEM Tilescans | Human Fetal Kidney Nephrogenesis TEM | https://doi.org/10.17867/10000192 | Public | 40 | 0 | 8,130 |
Stitched Human Intestinal Organoid TEM | Human Intestinal Organoid SARS-CoV-2 TEM | https://doi.org/10.6019/EMPIAR-10404 | Public | 2 | 0 | 2,544 |
Multiscale human liver tissue sample volume electron microscopy | Human Liver SBF-SEM | https://doi.org/10.6019/EMPIAR-13356 | Public | 0 | 1 | 400 |
Integrative imaging reveals SARS-CoV-2 induced reshaping of subcellular morphology | Human Lung Cell SARS-CoV-2 Subcellular Morphology | https://doi.org/10.6019/EMPIAR-10490 | Public | 0 | 9 | 691 |
SBF-SEM and FIB-SEM datasets and models of human macrophage and A431 cells | Human Macrophage & A431 Nuclear-Envelope Lipid Droplet EM | https://doi.org/10.6019/EMPIAR-13420 | Public | 0 | 7 | 147 |
Human Medial Entorhinal Cortex FIB-SEM Volumes | Human Medial Entorhinal Cortex FIB-SEM | https://doi.org/10.60533/boss-2024-ekc7 | Public | 0 | 61 | 223 |
Exploring the 3D structure of chromosomes in mitotic cells | Human Mitotic Chromosome SBF-SEM | https://doi.org/10.6019/EMPIAR-11953 | Public | 0 | 13 | 1,834 |
A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma | Human Multiple Myeloma Plasma Cell ET | https://doi.org/10.6019/EMPIAR-11243 | Public | 0 | 358 | 4,576 |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 1) | Human Notoroid SBF-SEM | https://doi.org/10.6019/EMPIAR-12162 | Public | 0 | 10 | 1,614 |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 2) | Human Notoroid SBF-SEM | https://doi.org/10.6019/EMPIAR-12163 | Public | 0 | 7 | 1,721 |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 3) | Human Notoroid SBF-SEM | https://doi.org/10.6019/EMPIAR-12164 | Public | 0 | 3 | 680 |
SBF SEM images of a notoroid in transverse orientation (Fig S24) | Human Notoroid SBF-SEM | https://doi.org/10.6019/EMPIAR-12161 | Public | 0 | 3 | 251 |
ME/CFS PBMC TEM images | Human PBMC ME/CFS TEM | https://doi.org/10.25740/zm622tr7008 | Public | 813 | 0 | 1,465 |
nPOD autoantibody-positive pancreas nanotomy | Human Pancreatic Islet Type 1 Diabetes STEM | https://doi.org/10.17867/10000168 | Public | 17 | 0 | 5,727 |
nPOD control pancreas nanotomy | Human Pancreatic Islet Type 1 Diabetes STEM | https://doi.org/10.17867/10000168 | Public | 21 | 0 | 6,495 |
nPOD type 1 diabetes pancreas nanotomy | Human Pancreatic Islet Type 1 Diabetes STEM | https://doi.org/10.17867/10000168 | Public | 24 | 0 | 7,261 |
nPOD type 2 diabetes pancreas nanotomy | Human Pancreatic Islet Type 1 Diabetes STEM | https://doi.org/10.17867/10000168 | Public | 2 | 0 | 800 |
SBF SEM of Human term placental villi | Human Placental Villi SBF-SEM | https://doi.org/10.6019/EMPIAR-10967 | Public | 0 | 11 | 2,042 |
Plasma Cell Centriole Electron Tomography | Human Plasma Cell Centriole ET | https://doi.org/10.6019/EMPIAR-11505 | Public | 0 | 24 | 297 |
Human renal carcinoma cell | Human Renal Carcinoma FIB-SEM | https://doi.org/10.25378/janelia.27075529 | Public | 0 | 1 | 400 |
Spatial Intra- and Intercellular Alignment of Respiratory Cilia and its Relation to Function | Human Respiratory Cilia SBF-SEM | https://doi.org/10.6019/EMPIAR-10312 | Public | 0 | 16 | 1,487 |
Images and annotations for training and testing of Glycogen-segmenter | Human Skeletal Muscle Glycogen Segmentation TEM | https://doi.org/10.5281/zenodo.18390286 | Public | 1,135 | 0 | 1,135 |
Human Skin & Mucosa STEM Nanotomy Maps | Human Skin & Mucosa Blistering Disease Nanotomy TEM | https://idr.openmicroscopy.org/study/idr0141/ | Public | 10 | 0 | 1,362 |
Human Temporal Cortex H01 | Human Temporal Cortex H01 SEM | https://webknossos.org/datasets/h01_20210601-6128c212010000a100ca0fd7/view | Public | 0 | 1 | 400 |
Human iPSC-Derived Lens Organoids Recapitulate Lens Development and Morphogenesis In Vitro | Human iPSC-Derived Lens Organoid SBF-SEM | https://doi.org/10.6019/EMPIAR-12990 | Public | 0 | 4 | 1,279 |
Hydra Endodermal Nerve Net Volume EM | Hydra vulgaris Endodermal Nerve Net SEM | https://doi.org/10.60533/BOSS-2025-08G4 | Public | 0 | 1 | 400 |
Electron microscopy images of thalamus from acutely hydrogen sulfide poisoned mice | Hydrogen Sulfide Poisoned Mouse Thalamus TEM | https://doi.org/10.5061/dryad.k3j9kd5ds | Public | 13 | 0 | 226 |
Interleaved scanning electron microscopy: exploring native samples at the mesoscale. Adult mouse brain | Interleaved FIB-SEM of Native Cryogenic Samples | https://doi.org/10.6019/EMPIAR-12244 | Public | 0 | 1 | 80 |
Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E. gracilis | Interleaved FIB-SEM of Native Cryogenic Samples | https://doi.org/10.6019/EMPIAR-12239 | Public | 0 | 1 | 16 |
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