Dataset stringlengths 13 214 | Experiment stringlengths 14 76 | Dataset DOI / URL stringlengths 32 128 | Grouping stringclasses 3
values | 2D images int64 0 5.2k | 3D acquisitions int64 0 358 | Training tiles int64 0 17.6k |
|---|---|---|---|---|---|---|
Interphase HeLa cell (jrc_hela-1) FIB-SEM volume | Interphase HeLa Cell jrc_hela-1 FIB-SEM | https://doi.org/10.25378/janelia.13123415 | Public | 0 | 1 | 386 |
Interphase HeLa cell (jrc_hela-2) FIB-SEM volume | Interphase HeLa Cell jrc_hela-2 FIB-SEM | https://doi.org/10.25378/janelia.13114211 | Public | 0 | 1 | 337 |
Interphase HeLa cell (jrc_hela-3) FIB-SEM volume | Interphase HeLa Cell jrc_hela-3 FIB-SEM | https://doi.org/10.25378/janelia.13114244 | Public | 0 | 1 | 510 |
Isolated cardiomyocyte TEM images and segmentation masks | Isolated Rat Cardiomyocyte TEM | https://doi.org/10.5281/zenodo.17068504 | Public | 9 | 0 | 215 |
Immortalized T-Cells (Jurkat) FIB-SEM volume | Jurkat T-Cell FIB-SEM | https://doi.org/10.25378/janelia.13114259 | Public | 0 | 1 | 400 |
KB-E0010 juvenile rat cortical glia SBF-SEM volume | Juvenile Rat Cortical Glia SBF-SEM | https://webknossos.org/datasets/KB-E0010-685bf5a2010000db05b3b6dd/view | Public | 0 | 1 | 68 |
Curved crease origami at cellular scales enables hyper-extensibility of Lacrymaria olor | Lacrymaria olor Cell Hyperextensibility TEM | https://doi.org/10.5061/dryad.4xgxd25g0 | Public | 4 | 6 | 108 |
Hildebrand 2017 Larval Zebrafish ssEM | Larval Zebrafish Brain SEM | https://doi.org/10.60533/BOSS-2017-VAW4 | Public | 0 | 2 | 275 |
Leishmania mexicana Cell Cycle SBF-SEM | Leishmania mexicana Cell Cycle SBF-SEM | https://doi.org/10.6019/EMPIAR-11826 | Public | 0 | 1 | 400 |
SBFSEM imaging of Leishmania haptomonad-like cells attached to plastic | Leishmania mexicana Haptomonad Adhesion | https://doi.org/10.6019/EMPIAR-11464 | Public | 0 | 1 | 400 |
SBFSEM imaging of Leishmania haptomonads on the stomodeal valve in the sand fly | Leishmania mexicana Haptomonad Adhesion | https://doi.org/10.6019/EMPIAR-11463 | Public | 0 | 1 | 400 |
Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly | Leishmania mexicana Haptomonad Adhesion | https://doi.org/10.6019/EMPIAR-11467 | Public | 0 | 1 | 160 |
Serial section electron tomography of a Leishmania haptomonad-like cell attached to plastic | Leishmania mexicana Haptomonad Adhesion | https://doi.org/10.6019/EMPIAR-11468 | Public | 0 | 1 | 160 |
Leishmania mexicana whole cell electron tomography | Leishmania mexicana Whole-Cell ET | https://doi.org/10.5281/zenodo.10652021 | Public | 0 | 3 | 5 |
LimeSeg Test Datasets | LimeSeg HeLa Cell FIB-SEM Test Dataset | https://doi.org/10.5281/zenodo.1472859 | Public | 0 | 1 | 40 |
FAST-EM array tomography data of wild-type MCF-7 cells prepared with the rOTO protocol and stained with uranyl acetate | MCF-7 Cell FAST-EM Array Tomography | https://doi.org/10.6019/EMPIAR-12190 | Public | 0 | 55 | 17,594 |
MICrONS Basil Mouse Visual Cortex | MICrONS Mouse Visual Cortex TEM | https://doi.org/10.60533/BOSS-2019-QF8A | Public | 0 | 1 | 400 |
MICrONS Interneuron Mouse Visual Cortex | MICrONS Mouse Visual Cortex TEM | https://doi.org/10.60533/BOSS-2022-LGIZ | Public | 0 | 1 | 400 |
MICrONS Minnie Mouse Visual Cortex | MICrONS Mouse Visual Cortex TEM | https://doi.org/10.60533/BOSS-2021-T0SY | Public | 0 | 2 | 800 |
MICrONS Pinky100 Mouse Visual Cortex | MICrONS Mouse Visual Cortex TEM | https://doi.org/10.60533/BOSS-2021-GTXY | Public | 0 | 1 | 400 |
Development of protocols for the first serial block-face scanning electron microscopy (SBF SEM) studies of bone tissue | Mammalian Bone Osteocyte SBF-SEM | https://doi.org/10.5258/SOTON/D1089 | Public | 0 | 1 | 80 |
ASEM/incasem FIB-SEM Cell Volumes | Mammalian Cell Organelle Segmentation FIB-SEM | https://open.quiltdata.com/b/asem-project/tree/datasets/ | Public | 0 | 34 | 712 |
Human H5 L2/3 STG multiSEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/H5_10_270um_L23_NH_NJ_extended_Aug22_2021_v2-62b17edd010000f70075d7ba/view | Public | 0 | 1 | 82 |
Human H5-10 Superior Temporal Gyrus Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/H5_10_270um_final_v1-62b17f91010000ef0075d7bf/view | Public | 0 | 1 | 236 |
Human L2/3 IFG H6 4S Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/H6_4S_FCx_VG_synapses_v1_typ_soma_exclusion_v2-62b17fcd010000eb0075d7c0/view | Public | 0 | 1 | 400 |
Human L2/3 STG SBEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/H5_5_AMK_2021-st700_segmentation_v1_typ_soma_excl_v1-62b17f19010000aa0075d7bc/view | Public | 0 | 1 | 400 |
Macaque L2/3 (S1) SBF-SEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/Mk1_F6_L23_JS_segmentation_v2_typ_soma_excl-62b17f19010000aa0075d7bb/view | Public | 0 | 1 | 324 |
Macaque L2/3 STG SBF-SEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/Mk1_T2_STG_VG_segmentation_v1_typ_soma_exclusion_v1-62b17f55010000eb0075d7be/view | Public | 0 | 1 | 400 |
Mouse A2 L2/3 SBF-SEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/Mouse_A2_L23_AMK_rotated-62b17edd010000f20075d7b9/view | Public | 0 | 1 | 400 |
Mouse L2/3 PPC SBEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/ppcAK99_76x79_segmentation_v1_typ_soma_excl_v1-62b18045010000020175d7c2/view | Public | 0 | 1 | 174 |
Mouse L2/3 S1 SBEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/ex144_st08x2_l23_segmentation_v6_typ_soma_excl_v1-62b19325010000860033e7c9/view | Public | 0 | 1 | 332 |
Mouse V2 L2/3 SBEM Volume | Mammalian Cortex Connectomics | https://webknossos.org/datasets/V2_102_l23_ak_straightenedPosthoc_segmentation_v1_typ_soma_excl_v1-62b18081010000f50075d7c3/view | Public | 0 | 1 | 261 |
Light and transmission electron microscopic images for quantitative lung morphology of mechanically ventilated rat lungs. | Mechanically Ventilated Rat Lung TEM | https://doi.org/10.5281/zenodo.3738928 | Public | 5,196 | 0 | 5,179 |
DeepContact training data | Membrane Contact Site EM Training Data | https://doi.org/10.6084/m9.figshare.19898404.v3 | Public | 269 | 0 | 601 |
MitoEM 2.0: A Benchmark for Challenging 3D Mitochondria Instance Segmentation from EM Images | MitoEM 2.0 3D Mitochondria Benchmark | https://doi.org/10.5281/zenodo.17613832 | Public | 0 | 45 | 463 |
Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation | Mitotic Chromosome Condensin-Cohesin SBF-SEM | https://doi.org/10.6019/EMPIAR-11919 | Public | 0 | 4 | 523 |
Mitotic HeLa cell | Mitotic HeLa Cell FIB-SEM | https://doi.org/10.25378/janelia.13114472 | Public | 0 | 1 | 400 |
volume EM dataset of the 5-day-old Mnemiopsis leidyi aboral organ | Mnemiopsis leidyi Aboral Organ ssET | https://doi.org/10.6019/EMPIAR-13030 | Public | 0 | 1 | 167 |
Diabetic Human Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164577 | Public | 0 | 1 | 244 |
Diabetic Human Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164581 | Public | 0 | 1 | 36 |
Diabetic Human Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164589 | Public | 0 | 1 | 124 |
Diabetic Mouse 1 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164369 | Public | 0 | 1 | 198 |
Diabetic Mouse 1 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164375 | Public | 0 | 1 | 86 |
Diabetic Mouse 1 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164386 | Public | 0 | 1 | 26 |
Diabetic Mouse 2 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164392 | Public | 0 | 1 | 141 |
Diabetic Mouse 2 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164395 | Public | 0 | 1 | 196 |
Diabetic Mouse 2 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164403 | Public | 0 | 1 | 189 |
Diabetic Mouse 3 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164465 | Public | 0 | 1 | 84 |
Diabetic Mouse 3 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164473 | Public | 0 | 1 | 244 |
Diabetic Mouse 3 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164479 | Public | 0 | 1 | 124 |
Non-diabetic Human Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164516 | Public | 0 | 1 | 188 |
Non-diabetic Human Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164547 | Public | 0 | 1 | 185 |
Non-diabetic Human Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164557 | Public | 0 | 1 | 188 |
Non-diabetic Mouse 1 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15163921 | Public | 0 | 1 | 33 |
Non-diabetic Mouse 1 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15163977 | Public | 0 | 1 | 108 |
Non-diabetic Mouse 1 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164033 | Public | 0 | 1 | 162 |
Non-diabetic Mouse 2 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164075 | Public | 0 | 1 | 136 |
Non-diabetic Mouse 2 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164081 | Public | 0 | 1 | 184 |
Non-diabetic Mouse 2 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164210 | Public | 0 | 1 | 104 |
Non-diabetic Mouse 3 Capillary 1 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164220 | Public | 0 | 1 | 168 |
Non-diabetic Mouse 3 Capillary 2 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164263 | Public | 0 | 1 | 212 |
Non-diabetic Mouse 3 Capillary 3 | Mouse & Human Diabetic Retinal Capillary SBF-SEM | https://doi.org/10.5281/zenodo.15164279 | Public | 0 | 1 | 292 |
2D and 3D instance segmentation of nuclei from volume electron microscopy data | Mouse & Human Nuclei Instance Segmentation vEM | https://www.ebi.ac.uk/biostudies/studies/S-BIAD2822 | Public | 10 | 2 | 0 |
Mouse V1 Layer 2/3 P105 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Mouse V1 Layer 2/3 P523 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Mouse V1 Layer 4 P105 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Mouse V1 Layer 4 P523 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Mouse V1 Layer 4 P6 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Rhesus Macaque V1 Layer 2/3 P3000 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Rhesus Macaque V1 Layer 2/3 P7 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Rhesus Macaque V1 Layer 2/3 P75 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Rhesus Macaque V1 Layer 4 P3000 EM Volume | Mouse & Macaque Visual Cortex Synapse Development SEM | https://doi.org/10.60533/boss-2023-0s41 | Public | 0 | 1 | 400 |
Mouse Embryonic Fibroblast (cryo-TEM) | Mouse & Zebrafish Virtual Nanoscopy Gigapixel TEM | https://idr.openmicroscopy.org/study/idr0053/ | Public | 1 | 0 | 71 |
Zebrafish Embryo (sagittal section) | Mouse & Zebrafish Virtual Nanoscopy Gigapixel TEM | https://idr.openmicroscopy.org/study/idr0053/ | Public | 1 | 0 | 200 |
Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - CAV1 knockout | Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM | https://doi.org/10.5281/zenodo.13880353 | Public | 17 | 0 | 607 |
Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - Cav1 Y14F | Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM | https://doi.org/10.5281/zenodo.13880329 | Public | 27 | 0 | 1,069 |
Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - Wild-type | Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM | https://doi.org/10.5281/zenodo.13880307 | Public | 17 | 0 | 685 |
Basolateral Amygdala Synapse Serial-Section TEM | Mouse Basolateral Amygdala Alpha-Synuclein Aggregation TEM | https://doi.org/10.60533/boss-2024-3x51 | Public | 0 | 16 | 95 |
Benchmarking Anisotropic vEM Evaluation for Axial Super-Resolution (BRAVE-ASR) | Mouse Brain Axial Super-Resolution Benchmark FIB-SEM | https://doi.org/10.5281/zenodo.17299282 | Public | 0 | 2 | 6 |
Multiregional blood-brain barrier phenotyping identifies the prefrontal cortex as the most vulnerable region to ageing in mice - Dataset | Mouse Brain Blood-Brain Barrier Aging TEM | https://doi.org/10.5281/zenodo.18669865 | Public | 174 | 0 | 692 |
SEM images of Mouse brain tissue sample | Mouse Brain FIB-SEM | https://doi.org/10.6019/EMPIAR-12581 | Public | 0 | 1 | 15 |
SBF-SEM Dataset of "Breaking Free from the Acquisition Dogma for Volume Electron Microscopy" | Mouse Brain VEM Denoising SBF-SEM | https://doi.org/10.5281/zenodo.17082440 | Public | 0 | 5 | 660 |
Benchmark TEM data of mouse brain previously imaged by Nikon confocal microscopy | Mouse Brain vCLEM | https://doi.org/10.6019/EMPIAR-12850 | Public | 6 | 3 | 589 |
Mouse CA1 Hippocampus FIB-SEM Volume | Mouse CA1 Hippocampus FIB-SEM | https://www.epfl.ch/labs/cvlab/data/data-em/ | Public | 0 | 1 | 14 |
Bloss 2018 Mouse CA1 ssTEM | Mouse CA1 Hippocampus ssTEM | https://doi.org/10.60533/BOSS-2018-EFTV | Public | 0 | 1 | 400 |
Cardiac Microvascular Injury I/R & H/R Validation TEM | Mouse Cardiac Microvascular Ischemia/Reperfusion TEM | https://doi.org/10.5281/zenodo.17137494 | Public | 11 | 0 | 66 |
Cultured Mouse Cerebellar Granule Neurons | Mouse Cerebellar Granule Neuron FIB-SEM (jrc_mus-granule-neurons-1) | https://doi.org/10.25378/janelia.24222844 | Public | 0 | 1 | 288 |
Wilson 2019 Mouse Cerebellum ATUM-SEM Volumes | Mouse Cerebellum Postnatal Development SEM | https://doi.org/10.60533/BOSS-2019-KMFO | Public | 0 | 2 | 791 |
Mouse Cerebellum SBF-SEM | Mouse Cerebellum SBF-SEM | https://doi.org/10.60533/BOSS-2023-3DLD | Public | 0 | 1 | 400 |
A large-scale transmission electron microscopy dataset of an adult mouse cerebellum | Mouse Cerebellum ssTEM | https://doi.org/10.60533/BOSS-2022-9RSJ | Public | 0 | 1 | 400 |
Mouse cerebral cortex (jrc_mus-cortex-3) | Mouse Cerebral Cortex FIB-SEM | https://doi.org/10.25378/janelia.28754702 | Public | 0 | 1 | 400 |
FluoEM mouse cortex SBEM volume | Mouse Cerebral Cortex SBF-SEM | https://webknossos.org/datasets/FluoEM_2016-05-26_FD0144-2_v2s2s-5abb89f348d7a73cea448019/view | Public | 0 | 1 | 399 |
Mouse Cortex SBEM Volume (2012-11-23_ex144_st08x2) | Mouse Cerebral Cortex SBF-SEM (ex144) | https://webknossos.org/datasets/2012-11-23_ex144_st08x2-5fce1a690100007c00cfaff3/view | Public | 0 | 1 | 290 |
Mouse choroid plexus (jrc_choroid-plexus-2) | Mouse Choroid Plexus FIB-SEM (jrc_choroid-plexus-2) | https://doi.org/10.25378/janelia.13123427 | Public | 0 | 1 | 150 |
Mouse choroid plexus (jrc_mus-choroid-plexus-3) | Mouse Choroid Plexus FIB-SEM (jrc_mus-choroid-plexus-3) | https://doi.org/10.25378/janelia.29114576 | Public | 0 | 1 | 400 |
Three-Dimensional Reconstructions of Mouse Circumvallate Taste Buds Using Serial Blockface Scanning Electron Microscopy: I. Cell Types and the Apical Region of the Taste Bud | Mouse Circumvallate Taste Bud SBF-SEM | https://doi.org/10.6019/EMPIAR-10331 | Public | 0 | 2 | 800 |
Mouse Cochlea Unexposed M1 SBEM Volume | Mouse Cochlea Mitochondria SBF-SEM | https://webknossos.org/datasets/HuaLab-CBA_Ca-mouse-unexposed-M1-652d442501000053049c0270/view | Public | 0 | 1 | 400 |
Mouse Cochlea Unexposed M2 SBEM Volume | Mouse Cochlea Mitochondria SBF-SEM | https://webknossos.org/datasets/HuaLab-CBA_Ca-mouse-unexposed-M2-652d563301000068049c066e/view | Public | 0 | 1 | 400 |
Probing the role of synaptic adhesion molecule RTN4RL2 in setting up cochlear connectivity | Mouse Cochlea RTN4RL2 KO SBF-SEM | https://doi.org/10.6019/EMPIAR-13506 | Public | 0 | 3 | 1,185 |
Mouse Cochlea SBF-SEM Neural Circuitry Volume | Mouse Cochlea SBF-SEM | https://webknossos.org/datasets/HuaLab-CBA-mice-cochlea-mid-7w-5ff2feb90100001800af8d3c/view | Public | 0 | 1 | 443 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.